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Cow genome map

           
Conread name:
           
rova038_i13.y1
        

               
Conread position:
               
1-453
               

               
Cow position:
               
chr1:21786988-21787465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 232
               

               
Conread position:
               
2-230
               

               
Cow position:
               
chr1:57957192-57956963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
2-273
               

               
Cow position:
               
chr1:24202069-24201810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
126, 7
               

               
Conread position:
               
2-356
               

               
Cow position:
               
chr1:78783213-78783570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 11
               

               
Conread position:
               
2-423
               

               
Cow position:
               
chr1:90640699-90641125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 6
               

               
Conread position:
               
2-446
               

               
Cow position:
               
chr1:100705803-100706246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 7
               

               
Conread position:
               
2-448
               

               
Cow position:
               
chr1:30441621-30442078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
53, 7
               

               
Conread position:
               
2-449
               

               
Cow position:
               
chr1:66429968-66430414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 7
               

               
Conread position:
               
2-458
               

               
Cow position:
               
chr1:61005895-61005431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 6
               

               
Conread position:
               
2-460
               

               
Cow position:
               
chr1:55357613-55357160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 7
               

               
Conread position:
               
2-476
               

               
Cow position:
               
chr1:46218248-46218726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 7
               

               
Conread position:
               
5-289
               

               
Cow position:
               
chr1:10719821-10719528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
71, 229
               

               
Conread position:
               
5-290
               

               
Cow position:
               
chr1:31646883-31647163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
122, 186
               

               
Conread position:
               
5-290
               

               
Cow position:
               
chr1:36613606-36613321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 221
               

               
Conread position:
               
5-290
               

               
Cow position:
               
chr1:44136782-44136512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
123, 72
               

               
Conread position:
               
5-298
               

               
Cow position:
               
chr1:75093163-75093461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
5-311
               

               
Cow position:
               
chr1:71946695-71946398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
127, 36
               

               
Conread position:
               
5-315
               

               
Cow position:
               
chr1:69941296-69940985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
103, 63
               

               
Conread position:
               
5-348
               

               
Cow position:
               
chr1:5873304-5872953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 112
               

               
Conread position:
               
5-352
               

               
Cow position:
               
chr1:68282463-68282810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 283
               

               
Conread position:
               
5-355
               

               
Cow position:
               
chr1:24235849-24235498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 40
               

               
Conread position:
               
5-358
               

               
Cow position:
               
chr1:31341385-31341029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
123, 307
               

               
Conread position:
               
5-372
               

               
Cow position:
               
chr1:1801816-1802178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 63
               

               
Conread position:
               
5-373
               

               
Cow position:
               
chr1:61724351-61723980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
123, 35
               

               
Conread position:
               
5-373
               

               
Cow position:
               
chr1:102647600-102647234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 177
               

               
Conread position:
               
5-414
               

               
Cow position:
               
chr1:68951312-68951713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
123, 66
               

               
Conread position:
               
5-414
               

               
Cow position:
               
chr1:78091701-78092125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 180
               

               
Conread position:
               
5-416
               

               
Cow position:
               
chr1:4374669-4374247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 108
               

               
Conread position:
               
5-425
               

               
Cow position:
               
chr1:48444509-48444095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 63
               

               
Conread position:
               
5-436
               

               
Cow position:
               
chr1:7350207-7350658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 225
               

               
Conread position:
               
5-436
               

               
Cow position:
               
chr1:26702528-26702097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 70
               

               
Conread position:
               
5-436
               

               
Cow position:
               
chr1:70380486-70380033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
69, 230
               

               
Conread position:
               
5-437
               

               
Cow position:
               
chr1:37309841-37309408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 106
               

               
Conread position:
               
5-437
               

               
Cow position:
               
chr1:53424861-53425288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 72
               

               
Conread position:
               
5-439
               

               
Cow position:
               
chr1:81356034-81355589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 108
               

               
Conread position:
               
5-440
               

               
Cow position:
               
chr1:64251396-64250938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 128
               

               
Conread position:
               
5-440
               

               
Cow position:
               
chr1:96963988-96964430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 203
               

               
Conread position:
               
5-442
               

               
Cow position:
               
chr1:82884716-82884279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 109
               

               
Conread position:
               
5-443
               

               
Cow position:
               
chr1:95499826-95499379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 108
               

               
Conread position:
               
5-445
               

               
Cow position:
               
chr1:54199711-54199276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 112
               

               
Conread position:
               
5-445
               

               
Cow position:
               
chr1:61392124-61391672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 110
               

               
Conread position:
               
5-445
               

               
Cow position:
               
chr1:69539366-69539810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 110
               

               
Conread position:
               
5-445
               

               
Cow position:
               
chr1:89349651-89350084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 29
               

               
Conread position:
               
5-446
               

               
Cow position:
               
chr1:97231645-97232080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 108
               

               
Conread position:
               
5-450
               

               
Cow position:
               
chr1:8349638-8349200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 41
               

               
Conread position:
               
5-452
               

               
Cow position:
               
chr1:92963059-92963516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 240
               

               
Conread position:
               
5-453
               

               
Cow position:
               
chr1:71045420-71045873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 112
               

               
Conread position:
               
5-456
               

               
Cow position:
               
chr1:41181511-41181975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 30
               

               
Conread position:
               
5-456
               

               
Cow position:
               
chr1:100551631-100552105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 194
               

               
Conread position:
               
5-457
               

               
Cow position:
               
chr1:69264491-69264939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 108
               

               
Conread position:
               
5-457
               

               
Cow position:
               
chr1:82936915-82936466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 179
               

               
Conread position:
               
5-457
               

               
Cow position:
               
chr1:94226879-94226424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 187
               

               
Conread position:
               
5-458
               

               
Cow position:
               
chr1:3167397-3166944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
71, 90
               

               
Conread position:
               
5-458
               

               
Cow position:
               
chr1:34159504-34159967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 63
               

               
Conread position:
               
5-458
               

               
Cow position:
               
chr1:54207146-54206684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 41
               

               
Conread position:
               
5-458
               

               
Cow position:
               
chr1:57576093-57575633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 73
               

               
Conread position:
               
5-458
               

               
Cow position:
               
chr1:68818140-68817667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 122
               

               
Conread position:
               
5-459
               

               
Cow position:
               
chr1:36874687-36875159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 63
               

               
Conread position:
               
5-459
               

               
Cow position:
               
chr1:77462035-77462483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 40
               

               
Conread position:
               
5-459
               

               
Cow position:
               
chr1:80336581-80336117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 260
               

               
Conread position:
               
5-459
               

               
Cow position:
               
chr1:84255423-84255902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 32
               

               
Conread position:
               
5-459
               

               
Cow position:
               
chr1:89742343-89741862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 308
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr1:1981442-1980979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 47
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr1:11854021-11853554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
123, 242
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr1:51394079-51394551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 201
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr1:53374103-53374563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 178
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr1:56225147-56225602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 65
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr1:72035260-72034791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 135
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr1:98551389-98551855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 54
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr1:101822828-101822379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 101
               

               
Conread position:
               
5-461
               

               
Cow position:
               
chr1:99642694-99642233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 49
               

               
Conread position:
               
5-463
               

               
Cow position:
               
chr1:22728718-22729193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 19
               

               
Conread position:
               
5-463
               

               
Cow position:
               
chr1:41696730-41697195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 81
               

               
Conread position:
               
5-464
               

               
Cow position:
               
chr1:31934176-31934647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 167
               

               
Conread position:
               
5-465
               

               
Cow position:
               
chr1:11728862-11729316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 95
               

               
Conread position:
               
5-465
               

               
Cow position:
               
chr1:13637993-13637521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
123, 57
               

               
Conread position:
               
5-466
               

               
Cow position:
               
chr1:7739642-7740087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 60
               

               
Conread position:
               
5-466
               

               
Cow position:
               
chr1:10778242-10778703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 109
               

               
Conread position:
               
5-466
               

               
Cow position:
               
chr1:15547138-15547610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 108
               

               
Conread position:
               
5-466
               

               
Cow position:
               
chr1:53520581-53521059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 72
               

               
Conread position:
               
5-466
               

               
Cow position:
               
chr1:69695337-69694853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 61
               

               
Conread position:
               
5-466
               

               
Cow position:
               
chr1:81290190-81290647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 63
               

               
Conread position:
               
5-466
               

               
Cow position:
               
chr1:91066479-91066012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 116
               

               
Conread position:
               
5-469
               

               
Cow position:
               
chr1:3137595-3138056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 165
               

               
Conread position:
               
5-472
               

               
Cow position:
               
chr1:4032319-4032780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 52
               

               
Conread position:
               
5-475
               

               
Cow position:
               
chr1:44769440-44768964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 81
               

               
Conread position:
               
5-489
               

               
Cow position:
               
chr1:48731161-48730668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 76
               

               
Conread position:
               
6-230
               

               
Cow position:
               
chr1:6321874-6322105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
6-290
               

               
Cow position:
               
chr1:4026858-4027146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
188, 64
               

               
Conread position:
               
6-290
               

               
Cow position:
               
chr1:20002582-20002285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
82, 40
               

               
Conread position:
               
6-290
               

               
Cow position:
               
chr1:21131413-21131141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
108, 62
               

               
Conread position:
               
6-290
               

               
Cow position:
               
chr1:31765724-31765433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 24
               

               
Conread position:
               
6-346
               

               
Cow position:
               
chr1:22467598-22467949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chr1:1403793-1403461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
286, 40
               

               
Conread position:
               
6-356
               

               
Cow position:
               
chr1:76223021-76222666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 242
               

               
Conread position:
               
6-373
               

               
Cow position:
               
chr1:83082675-83083047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 87
               

               
Conread position:
               
6-414
               

               
Cow position:
               
chr1:52753496-52753072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
6-414
               

               
Cow position:
               
chr1:63596389-63595966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
70, 27
               

               
Conread position:
               
6-426
               

               
Cow position:
               
chr1:20204695-20205127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 36
               

               
Conread position:
               
6-433
               

               
Cow position:
               
chr1:91817101-91816664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 67
               

               
Conread position:
               
6-441
               

               
Cow position:
               
chr1:45289201-45288757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 71
               

               
Conread position:
               
6-442
               

               
Cow position:
               
chr1:53495132-53495577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 209
               

               
Conread position:
               
6-444
               

               
Cow position:
               
chr1:102266601-102266150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
77, 194
               

               
Conread position:
               
6-445
               

               
Cow position:
               
chr1:31348762-31348318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 63
               

               
Conread position:
               
6-448
               

               
Cow position:
               
chr1:63504011-63504454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
136, 80
               

               
Conread position:
               
6-451
               

               
Cow position:
               
chr1:95017841-95017422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
6-460
               

               
Cow position:
               
chr1:52039307-52039770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 107
               

               
Conread position:
               
6-460
               

               
Cow position:
               
chr1:52496446-52496906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 289
               

               
Conread position:
               
6-460
               

               
Cow position:
               
chr1:54258242-54258702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 61
               

               
Conread position:
               
6-460
               

               
Cow position:
               
chr1:76020010-76019562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 113
               

               
Conread position:
               
6-460
               

               
Cow position:
               
chr1:100421515-100421953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 55
               

               
Conread position:
               
6-465
               

               
Cow position:
               
chr1:22628969-22628510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 160
               

               
Conread position:
               
6-466
               

               
Cow position:
               
chr1:42887590-42887135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
122, 8
               

               
Conread position:
               
6-466
               

               
Cow position:
               
chr1:102350099-102349612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 454
               

               
Conread position:
               
6-469
               

               
Cow position:
               
chr1:53458376-53458840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 31
               

               
Conread position:
               
6-469
               

               
Cow position:
               
chr1:74822120-74822594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 253
               

               
Conread position:
               
6-474
               

               
Cow position:
               
chr1:11914202-11913729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 75
               

               
Conread position:
               
6-484
               

               
Cow position:
               
chr1:95176605-95177094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 224
               

               
Conread position:
               
7-257
               

               
Cow position:
               
chr1:83649-83901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
138, 119
               

               
Conread position:
               
7-290
               

               
Cow position:
               
chr1:57901066-57900786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 68
               

               
Conread position:
               
7-451
               

               
Cow position:
               
chr1:85028632-85029078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 119
               

               
Conread position:
               
7-453
               

               
Cow position:
               
chr1:874314-874781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 149
               

               
Conread position:
               
8-306
               

               
Cow position:
               
chr1:94211906-94212203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 105
               

               
Conread position:
               
9-239
               

               
Cow position:
               
chr1:55020160-55020383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
79, 107
               

               
Conread position:
               
9-285
               

               
Cow position:
               
chr1:12596231-12595955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 136
               

               
Conread position:
               
9-293
               

               
Cow position:
               
chr1:3035317-3035036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
84, 37
               

               
Conread position:
               
9-358
               

               
Cow position:
               
chr1:58419597-58419960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
68, 320
               

               
Conread position:
               
9-368
               

               
Cow position:
               
chr1:55135516-55135865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 68
               

               
Conread position:
               
9-453
               

               
Cow position:
               
chr1:39418445-39417988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 104
               

               
Conread position:
               
9-459
               

               
Cow position:
               
chr1:12222932-12222470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 309
               

               
Conread position:
               
9-460
               

               
Cow position:
               
chr1:43352976-43352522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 96
               

               
Conread position:
               
9-460
               

               
Cow position:
               
chr1:53308719-53308260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 104
               

               
Conread position:
               
9-476
               

               
Cow position:
               
chr1:28176687-28177157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 57
               

               
Conread position:
               
10-452
               

               
Cow position:
               
chr1:83583282-83582805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
63, 17
               

               
Conread position:
               
10-460
               

               
Cow position:
               
chr1:90868764-90868305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 154
               

               
Conread position:
               
10-468
               

               
Cow position:
               
chr1:39069284-39068814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 179
               

               
Conread position:
               
13-343
               

               
Cow position:
               
chr1:44164757-44165095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
115, 62
               

               
Conread position:
               
13-356
               

               
Cow position:
               
chr1:8532537-8532192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
75, 121
               

               
Conread position:
               
13-356
               

               
Cow position:
               
chr1:82861450-82861803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
13-407
               

               
Cow position:
               
chr1:83982699-83982299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
115, 65
               

               
Conread position:
               
13-412
               

               
Cow position:
               
chr1:63391095-63390681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 101
               

               
Conread position:
               
13-415
               

               
Cow position:
               
chr1:85596623-85597027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 87
               

               
Conread position:
               
13-437
               

               
Cow position:
               
chr1:95215499-95215079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 24
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chr1:48105759-48105312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 215
               

               
Conread position:
               
13-466
               

               
Cow position:
               
chr1:35162081-35162551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 100
               

               
Conread position:
               
14-446
               

               
Cow position:
               
chr1:102756743-102756313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
79, 101
               

               
Conread position:
               
14-456
               

               
Cow position:
               
chr1:72012128-72011683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 23
               

               
Conread position:
               
15-464
               

               
Cow position:
               
chr1:80988028-80988485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 44
               

               
Conread position:
               
17-444
               

               
Cow position:
               
chr1:63435122-63434688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 100
               

               
Conread position:
               
17-445
               

               
Cow position:
               
chr1:84282742-84283192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
110, 330
               

               
Conread position:
               
19-353
               

               
Cow position:
               
chr1:24528916-24528602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
12, 62
               

               
Conread position:
               
20-325
               

               
Cow position:
               
chr1:11772397-11772086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
108, 261
               

               
Conread position:
               
20-437
               

               
Cow position:
               
chr1:41056368-41056789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 124
               

               
Conread position:
               
21-304
               

               
Cow position:
               
chr1:53613512-53613225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
67, 159
               

               
Conread position:
               
21-453
               

               
Cow position:
               
chr1:100800042-100800480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 92
               

               
Conread position:
               
24-456
               

               
Cow position:
               
chr1:98360726-98360274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
24-463
               

               
Cow position:
               
chr1:95100654-95101075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
167, 45
               

               
Conread position:
               
25-445
               

               
Cow position:
               
chr1:18937144-18936719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 66
               

               
Conread position:
               
26-445
               

               
Cow position:
               
chr1:39510365-39509939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
52, 113
               

               
Conread position:
               
27-427
               

               
Cow position:
               
chr1:68845789-68845389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 42
               

               
Conread position:
               
27-463
               

               
Cow position:
               
chr1:49795691-49796128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 213
               

               
Conread position:
               
30-373
               

               
Cow position:
               
chr1:22448890-22448542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 82
               

               
Conread position:
               
30-460
               

               
Cow position:
               
chr1:53622662-53623088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 38
               

               
Conread position:
               
32-356
               

               
Cow position:
               
chr1:666056-666388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 157
               

               
Conread position:
               
37-422
               

               
Cow position:
               
chr1:71748304-71747924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
91, 16
               

               
Conread position:
               
37-453
               

               
Cow position:
               
chr1:77720526-77720122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
318, 59
               

               
Conread position:
               
38-444
               

               
Cow position:
               
chr1:87888108-87888506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
90, 30
               

               
Conread position:
               
39-358
               

               
Cow position:
               
chr1:33811637-33811954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 131
               

               
Conread position:
               
40-459
               

               
Cow position:
               
chr1:81613089-81613523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 190
               

               
Conread position:
               
42-358
               

               
Cow position:
               
chr1:81472585-81472895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
85, 139
               

               
Conread position:
               
43-368
               

               
Cow position:
               
chr1:3752236-3751904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
76, 224
               

               
Conread position:
               
44-330
               

               
Cow position:
               
chr1:91142447-91142160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
43, 81
               

               
Conread position:
               
44-459
               

               
Cow position:
               
chr1:100741006-100741410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
13, 26
               

               
Conread position:
               
44-464
               

               
Cow position:
               
chr1:21954516-21954084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
8, 195
               

               
Conread position:
               
46-449
               

               
Cow position:
               
chr1:32341496-32341074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
110, 11
               

               
Conread position:
               
47-357
               

               
Cow position:
               
chr1:64888027-64887708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
85, 13
               

               
Conread position:
               
51-343
               

               
Cow position:
               
chr1:34000620-34000920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
77, 271
               

               
Conread position:
               
54-311
               

               
Cow position:
               
chr1:101547324-101547056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
74, 67
               

               
Conread position:
               
54-445
               

               
Cow position:
               
chr1:52434986-52435391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 216
               

               
Conread position:
               
58-442
               

               
Cow position:
               
chr1:72286327-72285952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 55
               

               
Conread position:
               
59-445
               

               
Cow position:
               
chr1:33719837-33720220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 54
               

               
Conread position:
               
62-440
               

               
Cow position:
               
chr1:97954722-97954354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
66, 54
               

               
Conread position:
               
62-458
               

               
Cow position:
               
chr1:89510206-89509789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 51
               

               
Conread position:
               
65-460
               

               
Cow position:
               
chr1:33997183-33996790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
63, 165
               

               
Conread position:
               
66-273
               

               
Cow position:
               
chr1:32631200-32631404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
62, 30
               

               
Conread position:
               
66-460
               

               
Cow position:
               
chr1:61742238-61741834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
48, 107
               

               
Conread position:
               
67-356
               

               
Cow position:
               
chr1:99095096-99095385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
61, 10
               

               
Conread position:
               
67-488
               

               
Cow position:
               
chr1:96136216-96136627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
40, 98
               

               
Conread position:
               
70-460
               

               
Cow position:
               
chr1:38278313-38277895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
18, 47
               

               
Conread position:
               
73-467
               

               
Cow position:
               
chr1:47658092-47658488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
55, 41
               

               
Conread position:
               
73-469
               

               
Cow position:
               
chr1:52488221-52487838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
154, 44
               

               
Conread position:
               
74-460
               

               
Cow position:
               
chr1:29935641-29935252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
54, 13
               

               
Conread position:
               
77-354
               

               
Cow position:
               
chr1:63905733-63905454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
51, 93
               

               
Conread position:
               
77-354
               

               
Cow position:
               
chr1:71818718-71818442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
51, 17
               

               
Conread position:
               
77-356
               

               
Cow position:
               
chr1:56748331-56748623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
51, 36
               

               
Conread position:
               
77-368
               

               
Cow position:
               
chr1:57635208-57635496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
51, 36
               

               
Conread position:
               
77-373
               

               
Cow position:
               
chr1:45535443-45535746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
51, 44
               

               
Conread position:
               
77-406
               

               
Cow position:
               
chr1:90864559-90864213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
51, 245
               

               
Conread position:
               
77-419
               

               
Cow position:
               
chr1:69540024-69540375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
77-439
               

               
Cow position:
               
chr1:81868986-81868617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
50, 112
               

               
Conread position:
               
77-444
               

               
Cow position:
               
chr1:76470400-76470761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 87
               

               
Conread position:
               
77-459
               

               
Cow position:
               
chr1:21835687-21836062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 117
               

               
Conread position:
               
77-459
               

               
Cow position:
               
chr1:37322265-37321869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
17, 153
               

               
Conread position:
               
77-460
               

               
Cow position:
               
chr1:74084448-74084057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
148, 47
               

               
Conread position:
               
77-460
               

               
Cow position:
               
chr1:83747684-83748077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
36, 22
               

               
Conread position:
               
77-466
               

               
Cow position:
               
chr1:34685936-34686316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
215, 148
               

               
Conread position:
               
77-466
               

               
Cow position:
               
chr1:64302491-64302104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
51, 24
               

               
Conread position:
               
77-469
               

               
Cow position:
               
chr1:197261-196866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
114, 49
               

               
Conread position:
               
77-469
               

               
Cow position:
               
chr1:34856888-34856485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 93
               

               
Conread position:
               
77-486
               

               
Cow position:
               
chr1:57264245-57263846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
51, 36
               

               
Conread position:
               
78-289
               

               
Cow position:
               
chr1:56711877-56711666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
6, 40
               

               
Conread position:
               
78-290
               

               
Cow position:
               
chr1:84116144-84116350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
50, 37
               

               
Conread position:
               
78-430
               

               
Cow position:
               
chr1:90423346-90422979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
8, 154
               

               
Conread position:
               
78-444
               

               
Cow position:
               
chr1:42555012-42555383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
50, 35
               

               
Conread position:
               
78-445
               

               
Cow position:
               
chr1:4290900-4291283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 20
               

               
Conread position:
               
78-451
               

               
Cow position:
               
chr1:41252661-41252285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
50, 160
               

               
Conread position:
               
78-459
               

               
Cow position:
               
chr1:68619195-68618800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 67
               

               
Conread position:
               
78-460
               

               
Cow position:
               
chr1:16767343-16766951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
54, 158
               

               
Conread position:
               
78-460
               

               
Cow position:
               
chr1:48580872-48581265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
34, 121
               

               
Conread position:
               
78-460
               

               
Cow position:
               
chr1:77880973-77880599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
50, 35
               

               
Conread position:
               
78-460
               

               
Cow position:
               
chr1:79165350-79164947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
78-460
               

               
Cow position:
               
chr1:82338043-82337646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 64
               

               
Conread position:
               
78-465
               

               
Cow position:
               
chr1:43505265-43505668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 94
               

               
Conread position:
               
78-466
               

               
Cow position:
               
chr1:3924051-3923659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 7
               

               
Conread position:
               
78-470
               

               
Cow position:
               
chr1:13413769-13414172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 35
               

               
Conread position:
               
80-306
               

               
Cow position:
               
chr1:19998291-19998069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 33
               

               
Conread position:
               
80-442
               

               
Cow position:
               
chr1:68827161-68826796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 33
               

               
Conread position:
               
80-460
               

               
Cow position:
               
chr1:45555106-45555499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 34
               

               
Conread position:
               
80-491
               

               
Cow position:
               
chr1:1165344-1165745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
28, 176
               

               
Conread position:
               
82-290
               

               
Cow position:
               
chr1:96713068-96712857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
82-452
               

               
Cow position:
               
chr1:54478068-54478455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 130
               

               
Conread position:
               
82-466
               

               
Cow position:
               
chr1:75744606-75745008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 144
               

               
Conread position:
               
83-354
               

               
Cow position:
               
chr1:11770546-11770272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
44, 30
               

               
Conread position:
               
83-460
               

               
Cow position:
               
chr1:50931222-50930845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 82
               

               
Conread position:
               
83-460
               

               
Cow position:
               
chr1:85162800-85162409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
45, 30
               

               
Conread position:
               
83-485
               

               
Cow position:
               
chr1:5135944-5135552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
45, 32
               

               
Conread position:
               
84-278
               

               
Cow position:
               
chr1:81363742-81363926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
43, 30
               

               
Conread position:
               
84-285
               

               
Cow position:
               
chr1:64160089-64160289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
44, 29
               

               
Conread position:
               
84-290
               

               
Cow position:
               
chr1:14379782-14379581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
44, 67
               

               
Conread position:
               
84-290
               

               
Cow position:
               
chr1:61246403-61246205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
85-290
               

               
Cow position:
               
chr1:89395340-89395555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
85-337
               

               
Cow position:
               
chr1:75967185-75967433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 90
               

               
Conread position:
               
85-445
               

               
Cow position:
               
chr1:7442732-7443095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
85-460
               

               
Cow position:
               
chr1:47233726-47233344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 97
               

               
Conread position:
               
85-466
               

               
Cow position:
               
chr1:24534494-24534116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
47, 93
               

               
Conread position:
               
85-485
               

               
Cow position:
               
chr1:71253806-71253397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
43, 159
               

               
Conread position:
               
86-290
               

               
Cow position:
               
chr1:81563483-81563690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
42, 56
               

               
Conread position:
               
86-303
               

               
Cow position:
               
chr1:98708192-98708410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
41, 116
               

               
Conread position:
               
86-354
               

               
Cow position:
               
chr1:24655710-24655978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
104, 222
               

               
Conread position:
               
86-466
               

               
Cow position:
               
chr1:10632803-10633186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
42, 106
               

               
Conread position:
               
88-373
               

               
Cow position:
               
chr1:57396177-57395897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
25, 116
               

               
Conread position:
               
88-460
               

               
Cow position:
               
chr1:52994776-52995160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 25
               

               
Conread position:
               
88-465
               

               
Cow position:
               
chr1:70538355-70538750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
40, 150
               

               
Conread position:
               
88-465
               

               
Cow position:
               
chr1:93528442-93528838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 374
               

               
Conread position:
               
88-469
               

               
Cow position:
               
chr1:78857570-78857186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 25
               

               
Conread position:
               
89-453
               

               
Cow position:
               
chr1:56477348-56477721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
39, 24
               

               
Conread position:
               
90-428
               

               
Cow position:
               
chr1:51531527-51531853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
38, 75
               

               
Conread position:
               
91-416
               

               
Cow position:
               
chr1:44506722-44507063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
91-457
               

               
Cow position:
               
chr1:71119266-71119650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
36, 71
               

               
Conread position:
               
91-460
               

               
Cow position:
               
chr1:6077649-6078025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
37, 139
               

               
Conread position:
               
91-460
               

               
Cow position:
               
chr1:84239352-84238989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 100
               

               
Conread position:
               
92-430
               

               
Cow position:
               
chr1:56634852-56635202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
16, 108
               

               
Conread position:
               
92-444
               

               
Cow position:
               
chr1:88618348-88618714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 185
               

               
Conread position:
               
93-458
               

               
Cow position:
               
chr1:3962927-3962554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
34, 74
               

               
Conread position:
               
94-467
               

               
Cow position:
               
chr1:95056813-95057184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 145
               

               
Conread position:
               
96-290
               

               
Cow position:
               
chr1:20287877-20288072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
90, 28
               

               
Conread position:
               
96-308
               

               
Cow position:
               
chr1:30504231-30504443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
32, 17
               

               
Conread position:
               
96-452
               

               
Cow position:
               
chr1:70434752-70435125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 141
               

               
Conread position:
               
96-453
               

               
Cow position:
               
chr1:25281916-25281528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
32, 129
               

               
Conread position:
               
96-453
               

               
Cow position:
               
chr1:54732697-54732361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
37, 9
               

               
Conread position:
               
96-466
               

               
Cow position:
               
chr1:51445639-51446028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
32, 185
               

               
Conread position:
               
96-466
               

               
Cow position:
               
chr1:71079193-71078817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
99, 25
               

               
Conread position:
               
99-292
               

               
Cow position:
               
chr1:100512359-100512555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
99-434
               

               
Cow position:
               
chr1:10655240-10655583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
28, 109
               

               
Conread position:
               
101-450
               

               
Cow position:
               
chr1:69678561-69678201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
27, 129
               

               
Conread position:
               
101-457
               

               
Cow position:
               
chr1:55229749-55230107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
27, 166
               

               
Conread position:
               
101-459
               

               
Cow position:
               
chr1:49839271-49839617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
13, 126
               

               
Conread position:
               
103-457
               

               
Cow position:
               
chr1:97611886-97611526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
25, 142
               

               
Conread position:
               
104-368
               

               
Cow position:
               
chr1:79278674-79278412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
188, 24
               

               
Conread position:
               
104-457
               

               
Cow position:
               
chr1:43389280-43388921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
24, 99
               

               
Conread position:
               
105-373
               

               
Cow position:
               
chr1:43448055-43447790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
13, 76
               

               
Conread position:
               
105-436
               

               
Cow position:
               
chr1:73761583-73761250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
22, 85
               

               
Conread position:
               
105-445
               

               
Cow position:
               
chr1:78809652-78809995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
23, 87
               

               
Conread position:
               
106-469
               

               
Cow position:
               
chr1:64804338-64803957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
107-446
               

               
Cow position:
               
chr1:89076865-89076513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
21, 41
               

               
Conread position:
               
107-457
               

               
Cow position:
               
chr1:55705483-55705112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
20, 132
               

               
Conread position:
               
107-467
               

               
Cow position:
               
chr1:16962244-16961869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
11, 141
               

               
Conread position:
               
108-449
               

               
Cow position:
               
chr1:52052932-52052594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
20, 99
               

               
Conread position:
               
109-339
               

               
Cow position:
               
chr1:4293835-4294062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 83
               

               
Conread position:
               
109-414
               

               
Cow position:
               
chr1:7186560-7186876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
23, 189
               

               
Conread position:
               
109-442
               

               
Cow position:
               
chr1:26200993-26201348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
19, 115
               

               
Conread position:
               
114-453
               

               
Cow position:
               
chr1:68862814-68863157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
145, 59
               

               
Conread position:
               
115-431
               

               
Cow position:
               
chr1:62291907-62291596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 70
               

               
Conread position:
               
117-460
               

               
Cow position:
               
chr1:49433484-49433130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
10, 142
               

               
Conread position:
               
117-460
               

               
Cow position:
               
chr1:85867375-85867723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
61, 140
               

               
Conread position:
               
118-347
               

               
Cow position:
               
chr1:45673493-45673729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
10, 34
               

               
Conread position:
               
118-413
               

               
Cow position:
               
chr1:6305087-6304777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
10, 204
               

               
Conread position:
               
118-459
               

               
Cow position:
               
chr1:7971212-7971547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
10, 59
               

               
Conread position:
               
118-460
               

               
Cow position:
               
chr1:52956041-52956385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
15, 69
               

               
Conread position:
               
118-466
               

               
Cow position:
               
chr1:15333662-15334033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
73, 15
               

               
Conread position:
               
118-466
               

               
Cow position:
               
chr1:93043807-93044159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
10, 112
               

               
Conread position:
               
120-460
               

               
Cow position:
               
chr1:34771720-34771369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 55
               

               
Conread position:
               
120-466
               

               
Cow position:
               
chr1:98461074-98461424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
8, 117
               

               
Conread position:
               
122-431
               

               
Cow position:
               
chr1:4414421-4414104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
165, 101
               

               
Conread position:
               
123-456
               

               
Cow position:
               
chr1:75382779-75383102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
68, 130
               

               
Conread position:
               
125-290
               

               
Cow position:
               
chr1:98618996-98619165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
67, 16
               

               
Conread position:
               
129-431
               

               
Cow position:
               
chr1:75141800-75142102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
104, 34
               

               
Conread position:
               
130-358
               

               
Cow position:
               
chr1:41954459-41954217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
130-411
               

               
Cow position:
               
chr1:98310856-98311157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
130-436
               

               
Cow position:
               
chr1:74956229-74955911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
131-459
               

               
Cow position:
               
chr1:90976287-90975956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
102, 49
               

               
Conread position:
               
131-460
               

               
Cow position:
               
chr1:19885180-19885515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
60, 110
               

               
Conread position:
               
131-460
               

               
Cow position:
               
chr1:53671954-53671616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
58, 105
               

               
Conread position:
               
131-470
               

               
Cow position:
               
chr1:27145858-27145509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
59, 98
               

               
Conread position:
               
132-435
               

               
Cow position:
               
chr1:72103643-72103959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
133-445
               

               
Cow position:
               
chr1:28563771-28563450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
92, 140
               

               
Conread position:
               
133-461
               

               
Cow position:
               
chr1:46030555-46030232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
159, 48
               

               
Conread position:
               
134-460
               

               
Cow position:
               
chr1:43340824-43340500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
57, 251
               

               
Conread position:
               
135-453
               

               
Cow position:
               
chr1:94261347-94261664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
159, 49
               

               
Conread position:
               
136-367
               

               
Cow position:
               
chr1:81470929-81471166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
55, 93
               

               
Conread position:
               
141-290
               

               
Cow position:
               
chr1:51654216-51654365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
141-373
               

               
Cow position:
               
chr1:82443651-82443415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
141-431
               

               
Cow position:
               
chr1:9533980-9534267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
13, 59
               

               
Conread position:
               
141-459
               

               
Cow position:
               
chr1:32001515-32001188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
148, 61
               

               
Conread position:
               
143-356
               

               
Cow position:
               
chr1:83594000-83593786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
31, 155
               

               
Conread position:
               
143-459
               

               
Cow position:
               
chr1:83072251-83072576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
153, 82
               

               
Conread position:
               
144-440
               

               
Cow position:
               
chr1:724543-724854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
63, 46
               

               
Conread position:
               
144-446
               

               
Cow position:
               
chr1:25734662-25734987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
146-466
               

               
Cow position:
               
chr1:49317683-49317356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
146, 13
               

               
Conread position:
               
147-425
               

               
Cow position:
               
chr1:43703226-43703508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
84, 18
               

               
Conread position:
               
147-459
               

               
Cow position:
               
chr1:54156929-54156600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
45, 27
               

               
Conread position:
               
147-469
               

               
Cow position:
               
chr1:33207063-33206734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
149-401
               

               
Cow position:
               
chr1:42398383-42398116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
151-460
               

               
Cow position:
               
chr1:68763866-68763551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
142, 86
               

               
Conread position:
               
151-463
               

               
Cow position:
               
chr1:86578764-86579100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
37, 84
               

               
Conread position:
               
151-489
               

               
Cow position:
               
chr1:75933088-75933434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
62, 58
               

               
Conread position:
               
156-440
               

               
Cow position:
               
chr1:60281187-60281487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
25, 73
               

               
Conread position:
               
163-450
               

               
Cow position:
               
chr1:41115886-41115595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
68, 7
               

               
Conread position:
               
164-445
               

               
Cow position:
               
chr1:484637-484348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
75, 27
               

               
Conread position:
               
164-462
               

               
Cow position:
               
chr1:91875082-91874781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
27, 52
               

               
Conread position:
               
165-466
               

               
Cow position:
               
chr1:59518750-59519056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
127, 60
               

               
Conread position:
               
166-459
               

               
Cow position:
               
chr1:101280885-101280603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
200, 78
               

               
Conread position:
               
166-466
               

               
Cow position:
               
chr1:101632508-101632198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
128, 59
               

               
Conread position:
               
168-452
               

               
Cow position:
               
chr1:77683190-77683475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
124, 65
               

               
Conread position:
               
171-373
               

               
Cow position:
               
chr1:20544131-20544340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
121, 66
               

               
Conread position:
               
171-444
               

               
Cow position:
               
chr1:95557872-95558155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
42, 33
               

               
Conread position:
               
171-465
               

               
Cow position:
               
chr1:38753753-38754061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
68, 121
               

               
Conread position:
               
172-459
               

               
Cow position:
               
chr1:93554680-93554969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
198, 82
               

               
Conread position:
               
181-464
               

               
Cow position:
               
chr1:74927726-74928024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
46, 76
               

               
Conread position:
               
183-451
               

               
Cow position:
               
chr1:42545940-42545654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
186-446
               

               
Cow position:
               
chr1:22192614-22192889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
122, 107
               

               
Conread position:
               
186-446
               

               
Cow position:
               
chr1:91811638-91811898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
106, 39
               

               
Conread position:
               
186-457
               

               
Cow position:
               
chr1:57420877-57420605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
106, 122
               

               
Conread position:
               
186-459
               

               
Cow position:
               
chr1:31272590-31272308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
107, 39
               

               
Conread position:
               
186-460
               

               
Cow position:
               
chr1:5579910-5580189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
109, 37
               

               
Conread position:
               
186-460
               

               
Cow position:
               
chr1:22525730-22526011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
106, 11
               

               
Conread position:
               
186-460
               

               
Cow position:
               
chr1:24778134-24777859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
107, 33
               

               
Conread position:
               
186-460
               

               
Cow position:
               
chr1:96081335-96081614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
43, 74
               

               
Conread position:
               
186-469
               

               
Cow position:
               
chr1:86110880-86110602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
110, 39
               

               
Conread position:
               
186-471
               

               
Cow position:
               
chr1:101834675-101834959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
114, 39
               

               
Conread position:
               
187-453
               

               
Cow position:
               
chr1:85647930-85647653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
105, 38
               

               
Conread position:
               
188-459
               

               
Cow position:
               
chr1:91023615-91023332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
104, 45
               

               
Conread position:
               
190-373
               

               
Cow position:
               
chr1:93228381-93228564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
27, 7
               

               
Conread position:
               
191-460
               

               
Cow position:
               
chr1:88913174-88913453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
28, 13
               

               
Conread position:
               
192-452
               

               
Cow position:
               
chr1:39225067-39224800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
107, 5
               

               
Conread position:
               
192-476
               

               
Cow position:
               
chr1:30047736-30047450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
39, 5
               

               
Conread position:
               
196-469
               

               
Cow position:
               
chr1:89785773-89786052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
104, 13
               

               
Conread position:
               
212-459
               

               
Cow position:
               
chr1:64572390-64572648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
80, 13
               

               
Conread position:
               
212-465
               

               
Cow position:
               
chr1:100817433-100817681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
79, 20
               

               
Conread position:
               
212-466
               

               
Cow position:
               
chr1:42869059-42868800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
18, 33
               

               
Conread position:
               
213-457
               

               
Cow position:
               
chr1:96472323-96472561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
213-460
               

               
Cow position:
               
chr1:80422154-80422406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
24, 102
               

               
Conread position:
               
213-461
               

               
Cow position:
               
chr1:43311898-43311632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
75, 10
               

               
Conread position:
               
214-460
               

               
Cow position:
               
chr1:98511806-98512060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
15, 28
               

               
Conread position:
               
215-466
               

               
Cow position:
               
chr1:72105292-72105548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
77, 19
               

               
Conread position:
               
216-460
               

               
Cow position:
               
chr1:7023000-7023255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
216-467
               

               
Cow position:
               
chr1:78697891-78697628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
13, 40
               

               
Conread position:
               
216-471
               

               
Cow position:
               
chr1:85550197-85549933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
76, 7
               

               
Conread position:
               
219-445
               

               
Cow position:
               
chr1:6826405-6826180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
151, 6
               

               
Conread position:
               
219-466
               

               
Cow position:
               
chr1:47886600-47886335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
73, 14
               

               
Conread position:
               
222-458
               

               
Cow position:
               
chr1:45553358-45553111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
74, 212
               

               
Conread position:
               
222-466
               

               
Cow position:
               
chr1:78794339-78794091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
80, 92
               

               
Conread position:
               
223-437
               

               
Cow position:
               
chr1:61543032-61542808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
8, 92
               

               
Conread position:
               
223-442
               

               
Cow position:
               
chr1:43822287-43822515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
223-451
               

               
Cow position:
               
chr1:82880531-82880769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
225-459
               

               
Cow position:
               
chr1:30418149-30417915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
68, 86
               

               
Conread position:
               
226-466
               

               
Cow position:
               
chr1:43855191-43855434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
66, 100
               

               
Conread position:
               
226-484
               

               
Cow position:
               
chr1:26427972-26427704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
67, 38
               

               
Conread position:
               
233-459
               

               
Cow position:
               
chr1:45670535-45670767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
60, 43
               

               
Conread position:
               
238-452
               

               
Cow position:
               
chr1:55818963-55819177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
54, 39
               

               
Conread position:
               
238-453
               

               
Cow position:
               
chr1:6972431-6972653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
56, 75
               

               
Conread position:
               
238-457
               

               
Cow position:
               
chr1:22823807-22824036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 22
               

               
Conread position:
               
239-459
               

               
Cow position:
               
chr1:50991837-50992067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
241-437
               

               
Cow position:
               
chr1:30189051-30189263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
242-469
               

               
Cow position:
               
chr1:100474137-100474379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
244-469
               

               
Cow position:
               
chr1:46030867-46031103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
246-444
               

               
Cow position:
               
chr1:100576130-100575920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
246-456
               

               
Cow position:
               
chr1:42541508-42541729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 18
               

               
Conread position:
               
254-448
               

               
Cow position:
               
chr1:48769721-48769924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
38, 62
               

               
Conread position:
               
254-464
               

               
Cow position:
               
chr1:59147424-59147207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
63, 43
               

               
Conread position:
               
254-479
               

               
Cow position:
               
chr1:58036936-58037169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
38, 197
               

               
Conread position:
               
256-466
               

               
Cow position:
               
chr1:45223499-45223721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
260-458
               

               
Cow position:
               
chr1:56225711-56225919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
33, 57
               

               
Conread position:
               
260-460
               

               
Cow position:
               
chr1:68672676-68672468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
260-460
               

               
Cow position:
               
chr1:81580093-81580311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
260-460
               

               
Cow position:
               
chr1:98575969-98576181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
32, 71
               

               
Conread position:
               
265-457
               

               
Cow position:
               
chr1:186348-186150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
271-484
               

               
Cow position:
               
chr1:43312094-43311873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
50, 23
               

               
Conread position:
               
277-466
               

               
Cow position:
               
chr1:101507298-101507497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
16, 158
               

               
Conread position:
               
278-453
               

               
Cow position:
               
chr1:99221413-99221227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
278-460
               

               
Cow position:
               
chr1:88359822-88360014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
14, 39
               

               
Conread position:
               
287-453
               

               
Cow position:
               
chr1:45478907-45478736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
293-459
               

               
Cow position:
               
chr1:8670731-8670907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
313-459
               

               
Cow position:
               
chr1:49980689-49980842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
324-452
               

               
Cow position:
               
chr1:2462373-2462501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
58, 118
               

               
Conread position:
               
324-460
               

               
Cow position:
               
chr1:56711609-56711467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
347-460
               

               
Cow position:
               
chr1:70416747-70416625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
1-485
               

               
Cow position:
               
chr10:21448261-21447778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
36, 21
               

               
Conread position:
               
2-368
               

               
Cow position:
               
chr10:20398843-20399206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
123, 7
               

               
Conread position:
               
2-443
               

               
Cow position:
               
chr10:53336766-53336316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
85, 11
               

               
Conread position:
               
2-453
               

               
Cow position:
               
chr10:35753326-35752865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 7
               

               
Conread position:
               
2-457
               

               
Cow position:
               
chr10:13311371-13311836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 7
               

               
Conread position:
               
2-460
               

               
Cow position:
               
chr10:18041815-18042284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 275
               

               
Conread position:
               
2-464
               

               
Cow position:
               
chr10:57785972-57786449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 227
               

               
Conread position:
               
3-466
               

               
Cow position:
               
chr10:35862592-35862116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 74
               

               
Conread position:
               
4-450
               

               
Cow position:
               
chr10:11221357-11221797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 73
               

               
Conread position:
               
4-467
               

               
Cow position:
               
chr10:19372686-19372225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 30
               

               
Conread position:
               
5-274
               

               
Cow position:
               
chr10:47158744-47159013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 233
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr10:10134615-10134893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 110
               

               
Conread position:
               
5-287
               

               
Cow position:
               
chr10:6345707-6345999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
5-290
               

               
Cow position:
               
chr10:11487337-11487063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
123, 65
               

               
Conread position:
               
5-290
               

               
Cow position:
               
chr10:52152161-52152446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 208
               

               
Conread position:
               
5-290
               

               
Cow position:
               
chr10:67716625-67716910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
122, 50
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr10:27362135-27362430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
35, 30
               

               
Conread position:
               
5-306
               

               
Cow position:
               
chr10:39774392-39774090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
127, 234
               

               
Conread position:
               
5-339
               

               
Cow position:
               
chr10:20446743-20447072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 29
               

               
Conread position:
               
5-339
               

               
Cow position:
               
chr10:24971957-24971635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
289, 61
               

               
Conread position:
               
5-350
               

               
Cow position:
               
chr10:20735347-20735688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 18
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr10:5607286-5607649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
103, 49
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr10:15293999-15294372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
81, 118
               

               
Conread position:
               
5-402
               

               
Cow position:
               
chr10:10468617-10469026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 110
               

               
Conread position:
               
5-412
               

               
Cow position:
               
chr10:24547897-24548306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 108
               

               
Conread position:
               
5-425
               

               
Cow position:
               
chr10:21461879-21462311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 156
               

               
Conread position:
               
5-435
               

               
Cow position:
               
chr10:52569233-52569671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 137
               

               
Conread position:
               
5-437
               

               
Cow position:
               
chr10:22528262-22527820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 77
               

               
Conread position:
               
5-437
               

               
Cow position:
               
chr10:24763113-24763564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 197
               

               
Conread position:
               
5-439
               

               
Cow position:
               
chr10:53973491-53973925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 55
               

               
Conread position:
               
5-444
               

               
Cow position:
               
chr10:31374468-31374002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
123, 132
               

               
Conread position:
               
5-444
               

               
Cow position:
               
chr10:35731890-35731439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 32
               

               
Conread position:
               
5-445
               

               
Cow position:
               
chr10:1979034-1978582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
68, 234
               

               
Conread position:
               
5-445
               

               
Cow position:
               
chr10:2613019-2613457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
114, 166
               

               
Conread position:
               
5-445
               

               
Cow position:
               
chr10:8077509-8077072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
109, 14
               

               
Conread position:
               
5-445
               

               
Cow position:
               
chr10:22617005-22616551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
5-445
               

               
Cow position:
               
chr10:23886807-23886371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 112
               

               
Conread position:
               
5-445
               

               
Cow position:
               
chr10:30456212-30455741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
41, 45
               

               
Conread position:
               
5-446
               

               
Cow position:
               
chr10:22567799-22567360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 108
               

               
Conread position:
               
5-446
               

               
Cow position:
               
chr10:51862420-51861988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
147, 85
               

               
Conread position:
               
5-448
               

               
Cow position:
               
chr10:37529642-37529173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 236
               

               
Conread position:
               
5-450
               

               
Cow position:
               
chr10:59164446-59164013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
83, 102
               

               
Conread position:
               
5-451
               

               
Cow position:
               
chr10:4310829-4311268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 70
               

               
Conread position:
               
5-451
               

               
Cow position:
               
chr10:8922919-8923376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
106, 17
               

               
Conread position:
               
5-451
               

               
Cow position:
               
chr10:32583557-32584007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
62, 41
               

               
Conread position:
               
5-452
               

               
Cow position:
               
chr10:2848999-2849445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
123, 56
               

               
Conread position:
               
5-452
               

               
Cow position:
               
chr10:52046504-52046968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 119
               

               
Conread position:
               
5-453
               

               
Cow position:
               
chr10:12314798-12315245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 166
               

               
Conread position:
               
5-453
               

               
Cow position:
               
chr10:28671185-28670719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 241
               

               
Conread position:
               
5-453
               

               
Cow position:
               
chr10:53674461-53674923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 26
               

               
Conread position:
               
5-453
               

               
Cow position:
               
chr10:65345814-65345376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 137
               

               
Conread position:
               
5-456
               

               
Cow position:
               
chr10:54948483-54948035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
242, 94
               

               
Conread position:
               
5-457
               

               
Cow position:
               
chr10:47773374-47773831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
38, 72
               

               
Conread position:
               
5-457
               

               
Cow position:
               
chr10:55122435-55122908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 66
               

               
Conread position:
               
5-458
               

               
Cow position:
               
chr10:1488485-1488937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 101
               

               
Conread position:
               
5-458
               

               
Cow position:
               
chr10:22471951-22472427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 111
               

               
Conread position:
               
5-458
               

               
Cow position:
               
chr10:63940419-63940880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 39
               

               
Conread position:
               
5-459
               

               
Cow position:
               
chr10:15818154-15817691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 49
               

               
Conread position:
               
5-459
               

               
Cow position:
               
chr10:41626248-41626700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 22
               

               
Conread position:
               
5-459
               

               
Cow position:
               
chr10:59664329-59663867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 141
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr10:668506-668970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
72, 135
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr10:5150980-5151451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 214
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr10:10148268-10148753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
70, 246
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr10:11009061-11009514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 115
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr10:39110357-39109911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 177
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr10:48462702-48462239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 83
               

               
Conread position:
               
5-465
               

               
Cow position:
               
chr10:21657063-21657531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 72
               

               
Conread position:
               
5-465
               

               
Cow position:
               
chr10:34661681-34661218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 227
               

               
Conread position:
               
5-465
               

               
Cow position:
               
chr10:37818921-37818446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 108
               

               
Conread position:
               
5-465
               

               
Cow position:
               
chr10:40421205-40420741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 48
               

               
Conread position:
               
5-465
               

               
Cow position:
               
chr10:55733961-55733496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 157
               

               
Conread position:
               
5-466
               

               
Cow position:
               
chr10:22390235-22390711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 94
               

               
Conread position:
               
5-466
               

               
Cow position:
               
chr10:30523419-30522949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 109
               

               
Conread position:
               
5-466
               

               
Cow position:
               
chr10:31362568-31362104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 55
               

               
Conread position:
               
5-466
               

               
Cow position:
               
chr10:39387099-39387563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 41
               

               
Conread position:
               
5-466
               

               
Cow position:
               
chr10:49146173-49146625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
123, 55
               

               
Conread position:
               
5-467
               

               
Cow position:
               
chr10:22321165-22321634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 114
               

               
Conread position:
               
5-469
               

               
Cow position:
               
chr10:10721046-10720561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 233
               

               
Conread position:
               
5-469
               

               
Cow position:
               
chr10:50359551-50360026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 118
               

               
Conread position:
               
5-469
               

               
Cow position:
               
chr10:61588621-61588147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 82
               

               
Conread position:
               
5-470
               

               
Cow position:
               
chr10:24870802-24871282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 312
               

               
Conread position:
               
5-472
               

               
Cow position:
               
chr10:19895038-19895509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 108
               

               
Conread position:
               
5-474
               

               
Cow position:
               
chr10:15867881-15868370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
122, 71
               

               
Conread position:
               
5-476
               

               
Cow position:
               
chr10:48741521-48741036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 174
               

               
Conread position:
               
5-484
               

               
Cow position:
               
chr10:36896040-36896534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
39, 94
               

               
Conread position:
               
6-278
               

               
Cow position:
               
chr10:32928409-32928678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
122, 82
               
6-286UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr10:7737430-7737721 (view  custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
122, 0
               
6-305UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr10:29211597-29211900 (view  custom track)

               
               
               
Alignm length:
306

               
               
               
Alignm identity:
220

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
127, 232
6-306UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr10:48377993-48377698 (view  custom track)

               
               
               
Alignm length:
311

               
               
               
Alignm identity:
218

               
               
               
Alignm E-value:
1e-34

               
               
               
Alignm gaps (pig, cow):
102, 77

               
               
               Conread position:6-324
               
               
               Cow position:chr10:43451277-43450951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:6-353
               
               
               Cow position:chr10:34906348-34906702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 316

               
               
               Conread position:6-418
               
               
               Cow position:chr10:24308255-24307861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 71

               
               
               Conread position:6-435
               
               
               Cow position:chr10:24096740-24096293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 247

               
               
               Conread position:6-445
               
               
               Cow position:chr10:60960579-60961024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 48

               
               
               Conread position:6-446
               
               
               Cow position:chr10:19104543-19104098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 359

               
               
               Conread position:6-452
               
               
               Cow position:chr10:17175672-17176129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 180

               
               
               Conread position:6-453
               
               
               Cow position:chr10:52278360-52278822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 230

               
               
               Conread position:6-458
               
               
               Cow position:chr10:51944002-51944464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:6-460
               
               
               Cow position:chr10:31401259-31400793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 224

               
               
               Conread position:6-465
               
               
               Cow position:chr10:21082021-21082490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:323
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):34, 121

               
               
               Conread position:6-466
               
               
               Cow position:chr10:9675817-9675353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 168

               
               
               Conread position:6-466
               
               
               Cow position:chr10:31527633-31528082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 190

               
               
               Conread position:6-466
               
               
               Cow position:chr10:35905191-35904726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 370

               
               
               Conread position:6-466
               
               
               Cow position:chr10:59839652-59839174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 178

               
               
               Conread position:6-467
               
               
               Cow position:chr10:54476746-54477214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 21

               
               
               Conread position:6-469
               
               
               Cow position:chr10:6489509-6489988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 56

               
               
               Conread position:6-469
               
               
               Cow position:chr10:36001845-36002311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):283, 107

               
               
               Conread position:6-469
               
               
               Cow position:chr10:41736945-41737402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:297
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):70, 121

               
               
               Conread position:6-469
               
               
               Cow position:chr10:43487353-43487826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 69

               
               
               Conread position:6-489
               
               
               Cow position:chr10:61839240-61839718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 83

               
               
               Conread position:7-457
               
               
               Cow position:chr10:33067945-33067475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:305
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):110, 240

               
               
               Conread position:7-460
               
               
               Cow position:chr10:77031-77476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 30

               
               
               Conread position:7-460
               
               
               Cow position:chr10:62286192-62286660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 108

               
               
               Conread position:7-466
               
               
               Cow position:chr10:28395643-28395191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 17

               
               
               Conread position:9-306
               
               
               Cow position:chr10:46801357-46801063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):118, 68

               
               
               Conread position:9-352
               
               
               Cow position:chr10:37528965-37528616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 168

               
               
               Conread position:9-446
               
               
               Cow position:chr10:59675610-59675163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 104

               
               
               Conread position:9-460
               
               
               Cow position:chr10:8403840-8404320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:317
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):35, 234

               
               
               Conread position:9-460
               
               
               Cow position:chr10:16645552-16645083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 410

               
               
               Conread position:9-460
               
               
               Cow position:chr10:29102682-29102240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 141

               
               
               Conread position:9-460
               
               
               Cow position:chr10:40147998-40147527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:298
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):21, 185

               
               
               Conread position:9-475
               
               
               Cow position:chr10:56475111-56475591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 183

               
               
               Conread position:9-483
               
               
               Cow position:chr10:3998552-3999036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 69

               
               
               Conread position:10-285
               
               
               Cow position:chr10:19401677-19401943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):117, 89

               
               
               Conread position:10-442
               
               
               Cow position:chr10:1749222-1749671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 15

               
               
               Conread position:10-445
               
               
               Cow position:chr10:10048331-10048759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 63

               
               
               Conread position:10-459
               
               
               Cow position:chr10:20132883-20132423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 59

               
               
               Conread position:13-358
               
               
               Cow position:chr10:50200350-50200706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:13-443
               
               
               Cow position:chr10:49045490-49045926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 157

               
               
               Conread position:13-448
               
               
               Cow position:chr10:69767027-69766593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):85, 31

               
               
               Conread position:13-459
               
               
               Cow position:chr10:20095402-20095869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 100

               
               
               Conread position:13-465
               
               
               Cow position:chr10:40737652-40738104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:293
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 121

               
               
               Conread position:14-465
               
               
               Cow position:chr10:33665489-33665956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 68

               
               
               Conread position:14-471
               
               
               Cow position:chr10:35900986-35901431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:303
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 22

               
               
               Conread position:16-466
               
               
               Cow position:chr10:51305975-51306451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 98

               
               
               Conread position:17-372
               
               
               Cow position:chr10:38274094-38274447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):110, 79

               
               
               Conread position:17-453
               
               
               Cow position:chr10:6235773-6235349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 18

               
               
               Conread position:17-460
               
               
               Cow position:chr10:42312555-42313008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 89

               
               
               Conread position:21-407
               
               
               Cow position:chr10:10985837-10985452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:268
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):177, 57

               
               
               Conread position:21-445
               
               
               Cow position:chr10:44782995-44783436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:23-446
               
               
               Cow position:chr10:68829610-68829194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:293
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):105, 121

               
               
               Conread position:23-457
               
               
               Cow position:chr10:37014295-37014735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 105

               
               
               Conread position:24-290
               
               
               Cow position:chr10:57736511-57736238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):51, 185

               
               
               Conread position:24-437
               
               
               Cow position:chr10:65424254-65423823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 193

               
               
               Conread position:24-460
               
               
               Cow position:chr10:5543591-5543146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 29

               
               
               Conread position:27-290
               
               
               Cow position:chr10:6986108-6986369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):56, 30

               
               
               Conread position:34-459
               
               
               Cow position:chr10:24731981-24732408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 69

               
               
               Conread position:35-460
               
               
               Cow position:chr10:31791588-31791154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 9

               
               
               Conread position:37-446
               
               
               Cow position:chr10:28105391-28104989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:294
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):91, 38

               
               
               Conread position:37-457
               
               
               Cow position:chr10:34430542-34430124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 29

               
               
               Conread position:38-474
               
               
               Cow position:chr10:10752309-10751872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 248

               
               
               Conread position:43-460
               
               
               Cow position:chr10:50534201-50533764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:299
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):29, 81

               
               
               Conread position:45-446
               
               
               Cow position:chr10:37913498-37913097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):144, 62

               
               
               Conread position:45-459
               
               
               Cow position:chr10:54848456-54848881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:49-247
               
               
               Cow position:chr10:10699828-10699627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:51-466
               
               
               Cow position:chr10:56828636-56828205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 62

               
               
               Conread position:54-350
               
               
               Cow position:chr10:46226774-46227079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 270

               
               
               Conread position:54-459
               
               
               Cow position:chr10:26209574-26209144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 297

               
               
               Conread position:54-469
               
               
               Cow position:chr10:32503138-32503541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 61

               
               
               Conread position:55-260
               
               
               Cow position:chr10:30914185-30914393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:57-460
               
               
               Cow position:chr10:41803205-41802788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):70, 48

               
               
               Conread position:58-469
               
               
               Cow position:chr10:64182142-64182557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 57

               
               
               Conread position:59-448
               
               
               Cow position:chr10:15462190-15462585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 112

               
               
               Conread position:60-446
               
               
               Cow position:chr10:56080478-56080083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:61-367
               
               
               Cow position:chr10:34607252-34607565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 169

               
               
               Conread position:62-409
               
               
               Cow position:chr10:35767383-35767036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 120

               
               
               Conread position:62-442
               
               
               Cow position:chr10:51696450-51696827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):68, 20

               
               
               Conread position:62-466
               
               
               Cow position:chr10:62353161-62353572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):66, 119

               
               
               Conread position:63-365
               
               
               Cow position:chr10:19094344-19094648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 85

               
               
               Conread position:66-329
               
               
               Cow position:chr10:888626-888890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):61, 55

               
               
               Conread position:66-367
               
               
               Cow position:chr10:64876217-64876523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):62, 16

               
               
               Conread position:67-460
               
               
               Cow position:chr10:2974388-2973983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):47, 8

               
               
               Conread position:69-446
               
               
               Cow position:chr10:29165979-29166363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 50

               
               
               Conread position:70-356
               
               
               Cow position:chr10:17982887-17983176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):5, 33

               
               
               Conread position:70-460
               
               
               Cow position:chr10:39227859-39228254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:273
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):5, 106

               
               
               Conread position:77-284
               
               
               Cow position:chr10:48259520-48259313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:77-292
               
               
               Cow position:chr10:49169346-49169127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:77-354
               
               
               Cow position:chr10:57457042-57457326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):51, 166

               
               
               Conread position:77-356
               
               
               Cow position:chr10:34554378-34554099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):51, 191

               
               
               Conread position:77-367
               
               
               Cow position:chr10:66211587-66211287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:77-431
               
               
               Cow position:chr10:38014083-38014441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):51, 103

               
               
               Conread position:77-442
               
               
               Cow position:chr10:46184483-46184826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):216, 36

               
               
               Conread position:77-446
               
               
               Cow position:chr10:1976610-1976227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:77-456
               
               
               Cow position:chr10:29920121-29919736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:275
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):114, 36

               
               
               Conread position:77-459
               
               
               Cow position:chr10:15115326-15115722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:272
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):51, 38

               
               
               Conread position:77-459
               
               
               Cow position:chr10:52296208-52296600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 36

               
               
               Conread position:77-466
               
               
               Cow position:chr10:9576328-9575934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):51, 28

               
               
               Conread position:77-466
               
               
               Cow position:chr10:17844479-17844879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):101, 36

               
               
               Conread position:77-466
               
               
               Cow position:chr10:37235841-37235434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:281
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):37, 48

               
               
               Conread position:77-474
               
               
               Cow position:chr10:20372421-20372017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 316

               
               
               Conread position:77-478
               
               
               Cow position:chr10:25699376-25699771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:278
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):154, 40

               
               
               Conread position:77-487
               
               
               Cow position:chr10:27749385-27749799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:280
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):56, 217

               
               
               Conread position:78-288
               
               
               Cow position:chr10:39646395-39646181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:78-290
               
               
               Cow position:chr10:34300216-34300426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):15, 38

               
               
               Conread position:78-331
               
               
               Cow position:chr10:24871599-24871858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):30, 51

               
               
               Conread position:78-358
               
               
               Cow position:chr10:31266612-31266338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:78-358
               
               
               Cow position:chr10:48388568-48388276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):30, 171

               
               
               Conread position:78-373
               
               
               Cow position:chr10:35857343-35857052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):73, 148

               
               
               Conread position:78-433
               
               
               Cow position:chr10:29360619-29360996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):49, 129

               
               
               Conread position:78-435
               
               
               Cow position:chr10:23936195-23936556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:78-446
               
               
               Cow position:chr10:40906024-40906404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):113, 37

               
               
               Conread position:78-450
               
               
               Cow position:chr10:43438581-43438963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:269
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):50, 328

               
               
               Conread position:78-452
               
               
               Cow position:chr10:54730723-54731108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):54, 35

               
               
               Conread position:78-453
               
               
               Cow position:chr10:13586425-13586802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 148

               
               
               Conread position:78-453
               
               
               Cow position:chr10:23056367-23055980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):91, 39

               
               
               Conread position:78-460
               
               
               Cow position:chr10:9342027-9341631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 166

               
               
               Conread position:78-460
               
               
               Cow position:chr10:15292983-15293370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:275
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):50, 61

               
               
               Conread position:78-460
               
               
               Cow position:chr10:23506776-23506387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:266
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):19, 122

               
               
               Conread position:78-466
               
               
               Cow position:chr10:53248297-53247893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 95

               
               
               Conread position:78-484
               
               
               Cow position:chr10:13391342-13390920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):55, 152

               
               
               Conread position:79-437
               
               
               Cow position:chr10:53357609-53357977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:79-453
               
               
               Cow position:chr10:22048962-22049352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 9

               
               
               Conread position:79-456
               
               
               Cow position:chr10:15872150-15871772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:79-460
               
               
               Cow position:chr10:23912784-23912409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 201

               
               
               Conread position:80-289
               
               
               Cow position:chr10:54936399-54936187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:80-290
               
               
               Cow position:chr10:9798480-9798274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):48, 101

               
               
               Conread position:80-368
               
               
               Cow position:chr10:51313701-51314005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:80-373
               
               
               Cow position:chr10:33867663-33867389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):250, 37

               
               
               Conread position:80-465
               
               
               Cow position:chr10:51288968-51289358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:82-368
               
               
               Cow position:chr10:29069871-29070161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):46, 150

               
               
               Conread position:82-459
               
               
               Cow position:chr10:6173072-6173437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):26, 128

               
               
               Conread position:82-466
               
               
               Cow position:chr10:42745628-42746027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 131

               
               
               Conread position:82-466
               
               
               Cow position:chr10:57461081-57461468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:275
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:83-445
               
               
               Cow position:chr10:5890054-5889673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:258
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:83-453
               
               
               Cow position:chr10:48257568-48257180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:260
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):24, 74

               
               
               Conread position:84-458
               
               
               Cow position:chr10:24752875-24753247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 30

               
               
               Conread position:84-464
               
               
               Cow position:chr10:24277028-24276615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):77, 155

               
               
               Conread position:85-331
               
               
               Cow position:chr10:49568922-49569172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):29, 129

               
               
               Conread position:85-435
               
               
               Cow position:chr10:53935022-53934673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:252
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):9, 57

               
               
               Conread position:85-460
               
               
               Cow position:chr10:45370776-45371160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):209, 39

               
               
               Conread position:86-288
               
               
               Cow position:chr10:55097962-55097767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:86-421
               
               
               Cow position:chr10:24744277-24744611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):223, 38

               
               
               Conread position:86-449
               
               
               Cow position:chr10:28039212-28038840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):173, 81

               
               
               Conread position:86-465
               
               
               Cow position:chr10:14946986-14947367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):42, 65

               
               
               Conread position:86-466
               
               
               Cow position:chr10:20552906-20553297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:271
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):105, 40

               
               
               Conread position:87-447
               
               
               Cow position:chr10:29279165-29279537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):155, 39

               
               
               Conread position:88-453
               
               
               Cow position:chr10:721020-721398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:262
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):40, 141

               
               
               Conread position:90-456
               
               
               Cow position:chr10:37512525-37512136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 182

               
               
               Conread position:90-466
               
               
               Cow position:chr10:64286073-64285685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:271
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):38, 153

               
               
               Conread position:92-442
               
               
               Cow position:chr10:38512903-38513261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:251
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):96, 24

               
               
               Conread position:92-453
               
               
               Cow position:chr10:32417091-32417450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):199, 34

               
               
               Conread position:92-460
               
               
               Cow position:chr10:11080683-11081071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 138

               
               
               Conread position:92-460
               
               
               Cow position:chr10:47542816-47543180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:92-460
               
               
               Cow position:chr10:49456349-49455988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 9

               
               
               Conread position:93-459
               
               
               Cow position:chr10:63276117-63276497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:263
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:96-293
               
               
               Cow position:chr10:23376734-23376536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):32, 139

               
               
               Conread position:96-445
               
               
               Cow position:chr10:52113936-52113584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:253
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):32, 85

               
               
               Conread position:96-456
               
               
               Cow position:chr10:24133091-24132723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 64

               
               
               Conread position:96-457
               
               
               Cow position:chr10:43508728-43509101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:262
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):196, 21

               
               
               Conread position:97-445
               
               
               Cow position:chr10:17863314-17863675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 158

               
               
               Conread position:98-358
               
               
               Cow position:chr10:31812686-31812439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 80

               
               
               Conread position:99-451
               
               
               Cow position:chr10:59571629-59571998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):15, 132

               
               
               Conread position:100-446
               
               
               Cow position:chr10:59152130-59151774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 101

               
               
               Conread position:101-370
               
               
               Cow position:chr10:9445279-9445013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):27, 125

               
               
               Conread position:101-373
               
               
               Cow position:chr10:32030092-32029823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):12, 82

               
               
               Conread position:101-460
               
               
               Cow position:chr10:57059547-57059177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):27, 41

               
               
               Conread position:105-290
               
               
               Cow position:chr10:59141166-59141354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 82

               
               
               Conread position:105-408
               
               
               Cow position:chr10:65071049-65071364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:106-464
               
               
               Cow position:chr10:38370723-38370347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 137

               
               
               Conread position:107-353
               
               
               Cow position:chr10:37822987-37822740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):21, 153

               
               
               Conread position:107-458
               
               
               Cow position:chr10:35791673-35792028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):21, 119

               
               
               Conread position:108-466
               
               
               Cow position:chr10:23576284-23576655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):24, 302

               
               
               Conread position:108-474
               
               
               Cow position:chr10:24561246-24560874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):20, 43

               
               
               Conread position:110-465
               
               
               Cow position:chr10:36489762-36490131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):18, 81

               
               
               Conread position:110-466
               
               
               Cow position:chr10:22341308-22341689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):24, 152

               
               
               Conread position:110-466
               
               
               Cow position:chr10:50183304-50182939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 62

               
               
               Conread position:117-453
               
               
               Cow position:chr10:31779518-31779171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):10, 55

               
               
               Conread position:118-445
               
               
               Cow position:chr10:37668409-37668067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):10, 24

               
               
               Conread position:118-460
               
               
               Cow position:chr10:6435811-6436164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:118-460
               
               
               Cow position:chr10:22396006-22396357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):10, 54

               
               
               Conread position:118-467
               
               
               Cow position:chr10:29251913-29252275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):10, 110

               
               
               Conread position:122-457
               
               
               Cow position:chr10:64041838-64042186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):66, 91

               
               
               Conread position:123-419
               
               
               Cow position:chr10:28152626-28152315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):68, 106

               
               
               Conread position:128-431
               
               
               Cow position:chr10:47412346-47412031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:129-460
               
               
               Cow position:chr10:37415548-37415894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):62, 99

               
               
               Conread position:130-357
               
               
               Cow position:chr10:9774111-9774343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):64, 170

               
               
               Conread position:130-373
               
               
               Cow position:chr10:25882190-25882425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):162, 70

               
               
               Conread position:130-441
               
               
               Cow position:chr10:60722380-60722074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):83, 50

               
               
               Conread position:130-446
               
               
               Cow position:chr10:29589076-29588752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:239
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):103, 138

               
               
               Conread position:130-459
               
               
               Cow position:chr10:40164165-40163830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):166, 34

               
               
               Conread position:130-464
               
               
               Cow position:chr10:62219588-62219942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:132-445
               
               
               Cow position:chr10:45379242-45378915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:133-373
               
               
               Cow position:chr10:31000836-31000573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:142-437
               
               
               Cow position:chr10:33733093-33732791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):55, 85

               
               
               Conread position:142-461
               
               
               Cow position:chr10:66194528-66194197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):150, 139

               
               
               Conread position:143-456
               
               
               Cow position:chr10:46493226-46492893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):76, 66

               
               
               Conread position:143-463
               
               
               Cow position:chr10:7816885-7817217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):153, 82

               
               
               Conread position:144-466
               
               
               Cow position:chr10:1996887-1996559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):47, 93

               
               
               Conread position:146-416
               
               
               Cow position:chr10:41254782-41254513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):79, 28

               
               
               Conread position:148-446
               
               
               Cow position:chr10:17836731-17837042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:151-445
               
               
               Cow position:chr10:45871298-45871604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):40, 168

               
               
               Conread position:153-460
               
               
               Cow position:chr10:24375336-24375648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:154-445
               
               
               Cow position:chr10:37173665-37173357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:156-403
               
               
               Cow position:chr10:39304062-39303799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):32, 21

               
               
               Conread position:156-461
               
               
               Cow position:chr10:4183982-4184301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:164-466
               
               
               Cow position:chr10:35653461-35653783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):6, 109

               
               
               Conread position:165-451
               
               
               Cow position:chr10:12486066-12486358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):125, 26

               
               
               Conread position:165-457
               
               
               Cow position:chr10:35779106-35778800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):29, 64

               
               
               Conread position:166-453
               
               
               Cow position:chr10:51942592-51942886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):55, 5

               
               
               Conread position:177-456
               
               
               Cow position:chr10:50134995-50134704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):115, 48

               
               
               Conread position:181-459
               
               
               Cow position:chr10:52695913-52695623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):113, 44

               
               
               Conread position:183-476
               
               
               Cow position:chr10:63883770-63884060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):59, 109

               
               
               Conread position:186-469
               
               
               Cow position:chr10:11463846-11463550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):111, 104

               
               
               Conread position:187-457
               
               
               Cow position:chr10:19549667-19549385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):41, 132

               
               
               Conread position:190-419
               
               
               Cow position:chr10:13617823-13617590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 48

               
               
               Conread position:190-453
               
               
               Cow position:chr10:4109414-4109686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):62, 122

               
               
               Conread position:191-453
               
               
               Cow position:chr10:4164093-4164367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):100, 32

               
               
               Conread position:191-460
               
               
               Cow position:chr10:37295837-37295568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):105, 18

               
               
               Conread position:192-452
               
               
               Cow position:chr10:47690218-47690484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):124, 24

               
               
               Conread position:192-466
               
               
               Cow position:chr10:68926980-68927262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):103, 66

               
               
               Conread position:194-466
               
               
               Cow position:chr10:60237265-60236985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):45, 81

               
               
               Conread position:198-440
               
               
               Cow position:chr10:55849189-55849434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):169, 27

               
               
               Conread position:198-448
               
               
               Cow position:chr10:6532319-6532064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):95, 79

               
               
               Conread position:212-468
               
               
               Cow position:chr10:16986176-16986444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):81, 73

               
               
               Conread position:216-458
               
               
               Cow position:chr10:2537945-2538194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:222-452
               
               
               Cow position:chr10:6663882-6664130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:238-446
               
               
               Cow position:chr10:25913923-25913706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:238-453
               
               
               Cow position:chr10:13315813-13316036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 42

               
               
               Conread position:241-439
               
               
               Cow position:chr10:533404-533615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:241-457
               
               
               Cow position:chr10:52881745-52881517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:242-460
               
               
               Cow position:chr10:15427191-15426977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):50, 74

               
               
               Conread position:244-434
               
               
               Cow position:chr10:36107540-36107339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:245-463
               
               
               Cow position:chr10:58935290-58935062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):47, 157

               
               
               Conread position:246-475
               
               
               Cow position:chr10:34660362-34660123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):47, 34

               
               
               Conread position:247-466
               
               
               Cow position:chr10:61510061-61509832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):12, 60

               
               
               Conread position:260-457
               
               
               Cow position:chr10:29526999-29526800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:260-459
               
               
               Cow position:chr10:15309509-15309297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 56

               
               
               Conread position:260-459
               
               
               Cow position:chr10:33084543-33084338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):32, 199

               
               
               Conread position:260-466
               
               
               Cow position:chr10:55396084-55395864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:269-451
               
               
               Cow position:chr10:15424956-15425145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:271-437
               
               
               Cow position:chr10:517195-517364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:277-456
               
               
               Cow position:chr10:13918342-13918159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:298-450
               
               
               Cow position:chr10:51727484-51727329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 15

               
               
               Conread position:305-451
               
               
               Cow position:chr10:705054-704901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):65, 144

               
               
               Conread position:307-460
               
               
               Cow position:chr10:54699762-54699600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:324-460
               
               
               Cow position:chr10:50042568-50042708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 135

               
               
               Conread position:324-466
               
               
               Cow position:chr10:32080235-32080382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:342-460
               
               
               Cow position:chr10:31266068-31265950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):40, 28

               
               
               Conread position:2-290
               
               
               Cow position:chr11:84891102-84890820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):19, 7

               
               
               Conread position:2-445
               
               
               Cow position:chr11:35684857-35684405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 6

               
               
               Conread position:2-450
               
               
               Cow position:chr11:21852643-21852201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:313
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):290, 113

               
               
               Conread position:2-450
               
               
               Cow position:chr11:76606331-76606773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:306
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):290, 7

               
               
               Conread position:2-485
               
               
               Cow position:chr11:73512778-73512307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 7

               
               
               Conread position:4-457
               
               
               Cow position:chr11:20601882-20602334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 176

               
               
               Conread position:5-269
               
               
               Cow position:chr11:55117117-55117391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 60

               
               
               Conread position:5-273
               
               
               Cow position:chr11:81931426-81931170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):41, 66

               
               
               Conread position:5-287
               
               
               Cow position:chr11:10875666-10875953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):122, 250

               
               
               Conread position:5-289
               
               
               Cow position:chr11:31885156-31885447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):63, 41

               
               
               Conread position:5-290
               
               
               Cow position:chr11:17968932-17968653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 221

               
               
               Conread position:5-290
               
               
               Cow position:chr11:81066938-81066655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 182

               
               
               Conread position:5-358
               
               
               Cow position:chr11:47586703-47586349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 45

               
               
               Conread position:5-370
               
               
               Cow position:chr11:3303480-3303834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 186

               
               
               Conread position:5-370
               
               
               Cow position:chr11:81174534-81174899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-373
               
               
               Cow position:chr11:17112983-17112617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:5-373
               
               
               Cow position:chr11:17860510-17860140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:5-374
               
               
               Cow position:chr11:68571028-68570651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 155

               
               
               Conread position:5-389
               
               
               Cow position:chr11:2309516-2309905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 87

               
               
               Conread position:5-435
               
               
               Cow position:chr11:35363140-35363567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 17

               
               
               Conread position:5-440
               
               
               Cow position:chr11:63469529-63469966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:297
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 72

               
               
               Conread position:5-440
               
               
               Cow position:chr11:80820355-80819914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 206

               
               
               Conread position:5-442
               
               
               Cow position:chr11:67246453-67246878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:5-443
               
               
               Cow position:chr11:46329144-46329593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):122, 25

               
               
               Conread position:5-444
               
               
               Cow position:chr11:44234001-44234450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 111

               
               
               Conread position:5-444
               
               
               Cow position:chr11:58990154-58990587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 250

               
               
               Conread position:5-445
               
               
               Cow position:chr11:23128908-23128444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 57

               
               
               Conread position:5-445
               
               
               Cow position:chr11:26483365-26483801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 48

               
               
               Conread position:5-445
               
               
               Cow position:chr11:29947293-29946818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 197

               
               
               Conread position:5-445
               
               
               Cow position:chr11:43897779-43898234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 227

               
               
               Conread position:5-446
               
               
               Cow position:chr11:61454891-61454420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 285

               
               
               Conread position:5-448
               
               
               Cow position:chr11:10213912-10213470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:300
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):152, 63

               
               
               Conread position:5-448
               
               
               Cow position:chr11:17321305-17321750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 98

               
               
               Conread position:5-449
               
               
               Cow position:chr11:8525459-8525016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 41

               
               
               Conread position:5-450
               
               
               Cow position:chr11:17279013-17278575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 28

               
               
               Conread position:5-450
               
               
               Cow position:chr11:31352927-31352453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 109

               
               
               Conread position:5-452
               
               
               Cow position:chr11:49152584-49153051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 57

               
               
               Conread position:5-453
               
               
               Cow position:chr11:38638769-38639215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 63

               
               
               Conread position:5-453
               
               
               Cow position:chr11:42083127-42083573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 110

               
               
               Conread position:5-453
               
               
               Cow position:chr11:44637117-44636649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 163

               
               
               Conread position:5-456
               
               
               Cow position:chr11:76114296-76114751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 224

               
               
               Conread position:5-458
               
               
               Cow position:chr11:8339761-8339311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 221

               
               
               Conread position:5-459
               
               
               Cow position:chr11:10094986-10095455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 251

               
               
               Conread position:5-459
               
               
               Cow position:chr11:30879321-30879775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 278

               
               
               Conread position:5-459
               
               
               Cow position:chr11:64029612-64029157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 108

               
               
               Conread position:5-459
               
               
               Cow position:chr11:77751122-77750662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:5-460
               
               
               Cow position:chr11:28643732-28644198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 22

               
               
               Conread position:5-460
               
               
               Cow position:chr11:42016990-42016527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 21

               
               
               Conread position:5-460
               
               
               Cow position:chr11:53778260-53778727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 55

               
               
               Conread position:5-460
               
               
               Cow position:chr11:84385993-84385528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 78

               
               
               Conread position:5-461
               
               
               Cow position:chr11:5032133-5031665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-466
               
               
               Cow position:chr11:52297576-52297100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 49

               
               
               Conread position:5-466
               
               
               Cow position:chr11:59872570-59873046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-466
               
               
               Cow position:chr11:68207204-68206723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 121

               
               
               Conread position:5-469
               
               
               Cow position:chr11:50153173-50152695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 28

               
               
               Conread position:5-469
               
               
               Cow position:chr11:80923692-80923205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 234

               
               
               Conread position:5-476
               
               
               Cow position:chr11:70484219-70483724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 226

               
               
               Conread position:5-481
               
               
               Cow position:chr11:17831589-17831089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 57

               
               
               Conread position:5-487
               
               
               Cow position:chr11:58399914-58400388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 19

               
               
               Conread position:6-272
               
               
               Cow position:chr11:22103407-22103668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):232, 107

               
               
               Conread position:6-290
               
               
               Cow position:chr11:42793315-42793043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):183, 61

               
               
               Conread position:6-292
               
               
               Cow position:chr11:10948827-10948537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):118, 7

               
               
               Conread position:6-292
               
               
               Cow position:chr11:25760338-25760629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):118, 60

               
               
               Conread position:6-356
               
               
               Cow position:chr11:62979122-62979489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 208

               
               
               Conread position:6-357
               
               
               Cow position:chr11:41239627-41239269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 108

               
               
               Conread position:6-367
               
               
               Cow position:chr11:15503746-15504122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 82

               
               
               Conread position:6-368
               
               
               Cow position:chr11:71846704-71846334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 224

               
               
               Conread position:6-413
               
               
               Cow position:chr11:4731983-4732406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 191

               
               
               Conread position:6-414
               
               
               Cow position:chr11:34615913-34616324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 274

               
               
               Conread position:6-435
               
               
               Cow position:chr11:33350057-33349615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 291

               
               
               Conread position:6-445
               
               
               Cow position:chr11:18086693-18086252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 99

               
               
               Conread position:6-445
               
               
               Cow position:chr11:25792048-25791599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 230

               
               
               Conread position:6-450
               
               
               Cow position:chr11:1380339-1380776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:303
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):122, 163

               
               
               Conread position:6-450
               
               
               Cow position:chr11:64090441-64089995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 72

               
               
               Conread position:6-452
               
               
               Cow position:chr11:44642636-44642191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 40

               
               
               Conread position:6-453
               
               
               Cow position:chr11:53147895-53147428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:6-457
               
               
               Cow position:chr11:27248137-27248598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 111

               
               
               Conread position:6-458
               
               
               Cow position:chr11:23138427-23137944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 118

               
               
               Conread position:6-459
               
               
               Cow position:chr11:38235882-38236363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 227

               
               
               Conread position:6-459
               
               
               Cow position:chr11:68905405-68904968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:307
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):127, 83

               
               
               Conread position:6-459
               
               
               Cow position:chr11:77705409-77705862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 164

               
               
               Conread position:6-460
               
               
               Cow position:chr11:45282581-45283041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 172

               
               
               Conread position:6-460
               
               
               Cow position:chr11:48649600-48650083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 40

               
               
               Conread position:6-460
               
               
               Cow position:chr11:54333977-54334439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 205

               
               
               Conread position:6-460
               
               
               Cow position:chr11:63847498-63847957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 18

               
               
               Conread position:6-461
               
               
               Cow position:chr11:21894505-21894049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 31

               
               
               Conread position:6-465
               
               
               Cow position:chr11:40826-41297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:309
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):185, 223

               
               
               Conread position:6-466
               
               
               Cow position:chr11:34112908-34113385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 159

               
               
               Conread position:6-472
               
               
               Cow position:chr11:33413878-33414361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 207

               
               
               Conread position:6-491
               
               
               Cow position:chr11:50072622-50073081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:321
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):362, 48

               
               
               Conread position:7-289
               
               
               Cow position:chr11:25336717-25337005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):82, 224

               
               
               Conread position:7-358
               
               
               Cow position:chr11:41577359-41577019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):285, 110

               
               
               Conread position:7-437
               
               
               Cow position:chr11:44036361-44036807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 223

               
               
               Conread position:7-469
               
               
               Cow position:chr11:1625573-1625104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:315
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):76, 182

               
               
               Conread position:8-366
               
               
               Cow position:chr11:83196148-83196506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 81

               
               
               Conread position:9-231
               
               
               Cow position:chr11:39034109-39034321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):119, 64

               
               
               Conread position:9-304
               
               
               Cow position:chr11:74929428-74929730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 104

               
               
               Conread position:9-343
               
               
               Cow position:chr11:49105701-49106043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 109

               
               
               Conread position:9-368
               
               
               Cow position:chr11:27386692-27386328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 42

               
               
               Conread position:9-459
               
               
               Cow position:chr11:30354710-30355168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:314
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):28, 109

               
               
               Conread position:9-459
               
               
               Cow position:chr11:65495680-65495230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 167

               
               
               Conread position:9-460
               
               
               Cow position:chr11:67746925-67747390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 241

               
               
               Conread position:10-442
               
               
               Cow position:chr11:64638874-64638433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 57

               
               
               Conread position:10-461
               
               
               Cow position:chr11:77745615-77745137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:328
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):65, 184

               
               
               Conread position:13-290
               
               
               Cow position:chr11:43524274-43524549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 144

               
               
               Conread position:13-305
               
               
               Cow position:chr11:81614977-81614693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):115, 62

               
               
               Conread position:13-358
               
               
               Cow position:chr11:47165482-47165140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:241
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):115, 55

               
               
               Conread position:13-459
               
               
               Cow position:chr11:46746284-46746750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 95

               
               
               Conread position:13-460
               
               
               Cow position:chr11:48271847-48272313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 78

               
               
               Conread position:13-470
               
               
               Cow position:chr11:30639279-30638829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:313
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):178, 75

               
               
               Conread position:14-367
               
               
               Cow position:chr11:66897147-66896788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):114, 89

               
               
               Conread position:14-466
               
               
               Cow position:chr11:259532-259053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:311
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):66, 145

               
               
               Conread position:16-368
               
               
               Cow position:chr11:7334068-7333709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):62, 224

               
               
               Conread position:19-289
               
               
               Cow position:chr11:62490090-62490361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):12, 209

               
               
               Conread position:21-449
               
               
               Cow position:chr11:56518650-56518212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 47

               
               
               Conread position:24-303
               
               
               Cow position:chr11:59156212-59155934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):63, 93

               
               
               Conread position:24-457
               
               
               Cow position:chr11:63065321-63065761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 29

               
               
               Conread position:24-458
               
               
               Cow position:chr11:22978200-22977764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 99

               
               
               Conread position:25-464
               
               
               Cow position:chr11:41809813-41809376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 96

               
               
               Conread position:27-459
               
               
               Cow position:chr11:70609456-70609906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 32

               
               
               Conread position:28-460
               
               
               Cow position:chr11:39499043-39499468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:306
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):100, 154

               
               
               Conread position:30-460
               
               
               Cow position:chr11:73924890-73924450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 196

               
               
               Conread position:34-339
               
               
               Cow position:chr11:43913895-43914197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):94, 87

               
               
               Conread position:36-466
               
               
               Cow position:chr11:18698547-18698993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 30

               
               
               Conread position:37-466
               
               
               Cow position:chr11:43361123-43360664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 20

               
               
               Conread position:38-402
               
               
               Cow position:chr11:30120986-30120609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:265
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):76, 58

               
               
               Conread position:38-429
               
               
               Cow position:chr11:51144394-51144793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):90, 189

               
               
               Conread position:38-459
               
               
               Cow position:chr11:68910176-68909747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 21

               
               
               Conread position:41-445
               
               
               Cow position:chr11:30934099-30934512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 102

               
               
               Conread position:41-445
               
               
               Cow position:chr11:80761697-80761282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 27

               
               
               Conread position:41-460
               
               
               Cow position:chr11:36848622-36849028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:280
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):259, 73

               
               
               Conread position:44-456
               
               
               Cow position:chr11:87155193-87155626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:285
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):15, 103

               
               
               Conread position:48-370
               
               
               Cow position:chr11:9837414-9837086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):34, 138

               
               
               Conread position:48-437
               
               
               Cow position:chr11:36986649-36987037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 17

               
               
               Conread position:48-453
               
               
               Cow position:chr11:23232826-23232416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 38

               
               
               Conread position:48-458
               
               
               Cow position:chr11:34962749-34963180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 65

               
               
               Conread position:48-465
               
               
               Cow position:chr11:60302271-60301854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 177

               
               
               Conread position:49-459
               
               
               Cow position:chr11:67931803-67931379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:288
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):79, 28

               
               
               Conread position:51-469
               
               
               Cow position:chr11:71868914-71868483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 131

               
               
               Conread position:55-460
               
               
               Cow position:chr11:1071400-1070978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:289
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):31, 150

               
               
               Conread position:57-416
               
               
               Cow position:chr11:70272999-70273373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 29

               
               
               Conread position:59-453
               
               
               Cow position:chr11:49935048-49934627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:62-358
               
               
               Cow position:chr11:65857558-65857861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:62-358
               
               
               Cow position:chr11:77241081-77241371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):230, 53

               
               
               Conread position:62-465
               
               
               Cow position:chr11:78381344-78380947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 39

               
               
               Conread position:65-358
               
               
               Cow position:chr11:62016567-62016280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):14, 49

               
               
               Conread position:65-456
               
               
               Cow position:chr11:80530074-80530465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 113

               
               
               Conread position:67-434
               
               
               Cow position:chr11:6835233-6835617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 164

               
               
               Conread position:67-445
               
               
               Cow position:chr11:18572509-18572896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 147

               
               
               Conread position:69-367
               
               
               Cow position:chr11:30720805-30721108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):59, 141

               
               
               Conread position:69-369
               
               
               Cow position:chr11:13190927-13191237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):44, 145

               
               
               Conread position:69-449
               
               
               Cow position:chr11:56821548-56821143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:268
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):59, 44

               
               
               Conread position:72-429
               
               
               Cow position:chr11:70303797-70304150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:236
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:72-466
               
               
               Cow position:chr11:8988519-8988113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 157

               
               
               Conread position:74-446
               
               
               Cow position:chr11:12111755-12111362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:270
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:74-478
               
               
               Cow position:chr11:33754186-33753781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 17

               
               
               Conread position:75-466
               
               
               Cow position:chr11:55761592-55761980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:285
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):6, 85

               
               
               Conread position:76-393
               
               
               Cow position:chr11:37347190-37347515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):58, 25

               
               
               Conread position:77-290
               
               
               Cow position:chr11:25165161-25165372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):55, 37

               
               
               Conread position:77-290
               
               
               Cow position:chr11:35148884-35149093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):162, 50

               
               
               Conread position:77-306
               
               
               Cow position:chr11:57111592-57111358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:77-358
               
               
               Cow position:chr11:62965838-62965547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:77-361
               
               
               Cow position:chr11:85764666-85764939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):21, 104

               
               
               Conread position:77-373
               
               
               Cow position:chr11:38193867-38194173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):51, 153

               
               
               Conread position:77-438
               
               
               Cow position:chr11:55333623-55333998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 154

               
               
               Conread position:77-445
               
               
               Cow position:chr11:9222010-9221636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):56, 152

               
               
               Conread position:77-449
               
               
               Cow position:chr11:50778085-50778464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):37, 170

               
               
               Conread position:77-451
               
               
               Cow position:chr11:18484444-18484087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):51, 103

               
               
               Conread position:77-452
               
               
               Cow position:chr11:83066211-83066592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 98

               
               
               Conread position:77-459
               
               
               Cow position:chr11:21844417-21844029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 49

               
               
               Conread position:77-460
               
               
               Cow position:chr11:7589906-7590301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 153

               
               
               Conread position:77-460
               
               
               Cow position:chr11:43430731-43430343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 85

               
               
               Conread position:77-466
               
               
               Cow position:chr11:67600483-67600901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:286
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):51, 173

               
               
               Conread position:77-466
               
               
               Cow position:chr11:74316422-74316829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:276
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):56, 36

               
               
               Conread position:78-368
               
               
               Cow position:chr11:18244225-18243930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):60, 238

               
               
               Conread position:78-373
               
               
               Cow position:chr11:48932866-48932571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:78-443
               
               
               Cow position:chr11:20761562-20761936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:78-458
               
               
               Cow position:chr11:6234162-6233771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 161

               
               
               Conread position:78-459
               
               
               Cow position:chr11:48474425-48474813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 71

               
               
               Conread position:78-460
               
               
               Cow position:chr11:11125379-11125775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 149

               
               
               Conread position:79-419
               
               
               Cow position:chr11:4436050-4436390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):55, 118

               
               
               Conread position:79-453
               
               
               Cow position:chr11:56654266-56654661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:267
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):115, 47

               
               
               Conread position:79-460
               
               
               Cow position:chr11:60470462-60470086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):49, 91

               
               
               Conread position:80-457
               
               
               Cow position:chr11:45632046-45631657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 150

               
               
               Conread position:80-460
               
               
               Cow position:chr11:65827013-65826638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 81

               
               
               Conread position:80-466
               
               
               Cow position:chr11:73354337-73353944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 234

               
               
               Conread position:82-373
               
               
               Cow position:chr11:42003233-42002932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):109, 42

               
               
               Conread position:83-342
               
               
               Cow position:chr11:75748157-75748419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):45, 24

               
               
               Conread position:83-363
               
               
               Cow position:chr11:77207770-77208048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):45, 127

               
               
               Conread position:83-406
               
               
               Cow position:chr11:32377909-32378244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:83-450
               
               
               Cow position:chr11:1362759-1362367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:83-456
               
               
               Cow position:chr11:45646869-45646484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):45, 32

               
               
               Conread position:83-458
               
               
               Cow position:chr11:34830058-34829677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 128

               
               
               Conread position:83-459
               
               
               Cow position:chr11:30475721-30476108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):45, 30

               
               
               Conread position:84-270
               
               
               Cow position:chr11:71309806-71309616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:84-287
               
               
               Cow position:chr11:51688003-51687798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:84-451
               
               
               Cow position:chr11:17192559-17192178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):52, 141

               
               
               Conread position:84-483
               
               
               Cow position:chr11:25332006-25331611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):166, 29

               
               
               Conread position:85-373
               
               
               Cow position:chr11:48697171-48697464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 183

               
               
               Conread position:85-463
               
               
               Cow position:chr11:33341422-33341028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:272
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):43, 63

               
               
               Conread position:85-467
               
               
               Cow position:chr11:81137945-81138330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 36

               
               
               Conread position:86-290
               
               
               Cow position:chr11:48232467-48232663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 84

               
               
               Conread position:86-446
               
               
               Cow position:chr11:377926-377545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:86-448
               
               
               Cow position:chr11:41271862-41272236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):40, 127

               
               
               Conread position:86-453
               
               
               Cow position:chr11:62155355-62155744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:274
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):140, 31

               
               
               Conread position:86-459
               
               
               Cow position:chr11:13043412-13043036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:267
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):42, 17

               
               
               Conread position:87-353
               
               
               Cow position:chr11:71455513-71455788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):41, 254

               
               
               Conread position:87-460
               
               
               Cow position:chr11:79728948-79728557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:88-358
               
               
               Cow position:chr11:8105509-8105786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:88-463
               
               
               Cow position:chr11:11232728-11232343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 81

               
               
               Conread position:89-460
               
               
               Cow position:chr11:83230657-83230290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):203, 25

               
               
               Conread position:90-446
               
               
               Cow position:chr11:50951279-50951651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 140

               
               
               Conread position:90-458
               
               
               Cow position:chr11:66041002-66041389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:91-465
               
               
               Cow position:chr11:19247466-19247082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 117

               
               
               Conread position:92-453
               
               
               Cow position:chr11:45898325-45897945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:269
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):21, 45

               
               
               Conread position:93-446
               
               
               Cow position:chr11:8148152-8147802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):200, 24

               
               
               Conread position:93-457
               
               
               Cow position:chr11:63482694-63482321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 340

               
               
               Conread position:93-460
               
               
               Cow position:chr11:34032464-34032088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:95-358
               
               
               Cow position:chr11:62045132-62045397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 96

               
               
               Conread position:96-343
               
               
               Cow position:chr11:59370749-59371000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 129

               
               
               Conread position:96-443
               
               
               Cow position:chr11:36799561-36799214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):196, 28

               
               
               Conread position:97-434
               
               
               Cow position:chr11:47544863-47545216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):35, 142

               
               
               Conread position:97-466
               
               
               Cow position:chr11:27746653-27747041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 135

               
               
               Conread position:100-373
               
               
               Cow position:chr11:30596735-30597009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):32, 64

               
               
               Conread position:100-445
               
               
               Cow position:chr11:83397643-83398001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):28, 65

               
               
               Conread position:102-358
               
               
               Cow position:chr11:63516563-63516828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):12, 129

               
               
               Conread position:103-451
               
               
               Cow position:chr11:3233821-3234177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):16, 112

               
               
               Conread position:104-435
               
               
               Cow position:chr11:45872576-45872225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):24, 106

               
               
               Conread position:104-460
               
               
               Cow position:chr11:77128411-77128771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):24, 59

               
               
               Conread position:105-481
               
               
               Cow position:chr11:33310714-33311109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 68

               
               
               Conread position:107-467
               
               
               Cow position:chr11:66188576-66188201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:267
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):21, 121

               
               
               Conread position:109-290
               
               
               Cow position:chr11:63520520-63520702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 89

               
               
               Conread position:109-352
               
               
               Cow position:chr11:3726033-3726283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:110-459
               
               
               Cow position:chr11:20238421-20238786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):24, 89

               
               
               Conread position:110-460
               
               
               Cow position:chr11:18707065-18706714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):18, 75

               
               
               Conread position:112-466
               
               
               Cow position:chr11:4663289-4662931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):12, 71

               
               
               Conread position:115-408
               
               
               Cow position:chr11:2832917-2832633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 101

               
               
               Conread position:117-290
               
               
               Cow position:chr11:41438469-41438290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:118-440
               
               
               Cow position:chr11:47899033-47899359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):10, 112

               
               
               Conread position:118-445
               
               
               Cow position:chr11:2083904-2084239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):10, 60

               
               
               Conread position:119-446
               
               
               Cow position:chr11:82940860-82940529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):9, 64

               
               
               Conread position:130-444
               
               
               Cow position:chr11:42044221-42043902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):61, 107

               
               
               Conread position:130-453
               
               
               Cow position:chr11:77546188-77546520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):161, 121

               
               
               Conread position:130-458
               
               
               Cow position:chr11:62620154-62620485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):182, 95

               
               
               Conread position:130-460
               
               
               Cow position:chr11:11469864-11469538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):161, 88

               
               
               Conread position:130-460
               
               
               Cow position:chr11:32436098-32436445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:247
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):61, 129

               
               
               Conread position:130-460
               
               
               Cow position:chr11:36659043-36658713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):162, 51

               
               
               Conread position:130-466
               
               
               Cow position:chr11:33348415-33348071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 190

               
               
               Conread position:132-406
               
               
               Cow position:chr11:18341267-18340984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):56, 107

               
               
               Conread position:132-469
               
               
               Cow position:chr11:26144313-26143976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):101, 42

               
               
               Conread position:134-453
               
               
               Cow position:chr11:29960078-29960401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):57, 41

               
               
               Conread position:137-460
               
               
               Cow position:chr11:81406381-81406056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):97, 103

               
               
               Conread position:138-449
               
               
               Cow position:chr11:17660872-17661183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):33, 88

               
               
               Conread position:138-465
               
               
               Cow position:chr11:39462395-39462741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:138-466
               
               
               Cow position:chr11:14470144-14470484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):21, 202

               
               
               Conread position:141-445
               
               
               Cow position:chr11:82108107-82107806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):143, 32

               
               
               Conread position:141-459
               
               
               Cow position:chr11:15772942-15772603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:141-460
               
               
               Cow position:chr11:17574540-17574237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):151, 39

               
               
               Conread position:142-411
               
               
               Cow position:chr11:61859118-61858841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 112

               
               
               Conread position:142-457
               
               
               Cow position:chr11:36238563-36238885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):49, 27

               
               
               Conread position:144-460
               
               
               Cow position:chr11:34145133-34144812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 85

               
               
               Conread position:146-488
               
               
               Cow position:chr11:38874617-38874267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:241
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):144, 276

               
               
               Conread position:149-461
               
               
               Cow position:chr11:65607905-65607577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):40, 80

               
               
               Conread position:150-416
               
               
               Cow position:chr11:36286488-36286762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):142, 47

               
               
               Conread position:151-459
               
               
               Cow position:chr11:61958959-61958635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):35, 291

               
               
               Conread position:153-453
               
               
               Cow position:chr11:71493068-71492758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):38, 161

               
               
               Conread position:153-460
               
               
               Cow position:chr11:72375896-72375565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):33, 76

               
               
               Conread position:157-470
               
               
               Cow position:chr11:68912939-68913262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):45, 33

               
               
               Conread position:164-457
               
               
               Cow position:chr11:41215547-41215840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):135, 33

               
               
               Conread position:164-460
               
               
               Cow position:chr11:13592541-13592850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):78, 91

               
               
               Conread position:166-370
               
               
               Cow position:chr11:48042233-48042022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:171-459
               
               
               Cow position:chr11:34646403-34646699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 54

               
               
               Conread position:171-460
               
               
               Cow position:chr11:70601009-70600718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 190

               
               
               Conread position:177-437
               
               
               Cow position:chr11:21438033-21438296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):54, 61

               
               
               Conread position:178-453
               
               
               Cow position:chr11:9270909-9270623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):52, 256

               
               
               Conread position:181-460
               
               
               Cow position:chr11:30954820-30955113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):61, 44

               
               
               Conread position:183-373
               
               
               Cow position:chr11:21428168-21427977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):109, 7

               
               
               Conread position:183-458
               
               
               Cow position:chr11:63909834-63909556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):186, 70

               
               
               Conread position:183-476
               
               
               Cow position:chr11:85294071-85294368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):113, 8

               
               
               Conread position:184-459
               
               
               Cow position:chr11:83925870-83926152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):29, 137

               
               
               Conread position:186-445
               
               
               Cow position:chr11:1157471-1157741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:186-445
               
               
               Cow position:chr11:8545186-8544922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):106, 61

               
               
               Conread position:188-460
               
               
               Cow position:chr11:16907214-16906940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):180, 37

               
               
               Conread position:191-446
               
               
               Cow position:chr11:75874920-75874657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):122, 42

               
               
               Conread position:191-466
               
               
               Cow position:chr11:70086156-70086451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):35, 221

               
               
               Conread position:193-459
               
               
               Cow position:chr11:48295866-48296140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):106, 32

               
               
               Conread position:194-457
               
               
               Cow position:chr11:63435352-63435628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):98, 31

               
               
               Conread position:194-460
               
               
               Cow position:chr11:40479020-40478742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 125

               
               
               Conread position:195-459
               
               
               Cow position:chr11:6245157-6245425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):172, 99

               
               
               Conread position:195-483
               
               
               Cow position:chr11:63917631-63917343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):163, 82

               
               
               Conread position:197-446
               
               
               Cow position:chr11:16540700-16540959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):95, 28

               
               
               Conread position:197-460
               
               
               Cow position:chr11:38577936-38577668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):32, 78

               
               
               Conread position:209-373
               
               
               Cow position:chr11:51626812-51626980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:210-457
               
               
               Cow position:chr11:71807721-71807459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:212-438
               
               
               Cow position:chr11:48306491-48306258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):81, 21

               
               
               Conread position:212-458
               
               
               Cow position:chr11:28993879-28993631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:212-460
               
               
               Cow position:chr11:6202299-6202555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):80, 29

               
               
               Conread position:213-457
               
               
               Cow position:chr11:49057256-49057501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 12

               
               
               Conread position:213-457
               
               
               Cow position:chr11:51729142-51729394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):79, 12

               
               
               Conread position:213-460
               
               
               Cow position:chr11:40573479-40573225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):79, 10

               
               
               Conread position:216-431
               
               
               Cow position:chr11:52983533-52983757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):24, 9

               
               
               Conread position:216-460
               
               
               Cow position:chr11:63999233-63998979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 28

               
               
               Conread position:218-486
               
               
               Cow position:chr11:70278250-70277978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):74, 93

               
               
               Conread position:221-448
               
               
               Cow position:chr11:70206184-70206418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):75, 37

               
               
               Conread position:221-465
               
               
               Cow position:chr11:52690661-52690402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 217

               
               
               Conread position:225-459
               
               
               Cow position:chr11:43008441-43008210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):80, 136

               
               
               Conread position:225-460
               
               
               Cow position:chr11:7460750-7460503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 211

               
               
               Conread position:227-466
               
               
               Cow position:chr11:70756348-70756597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):66, 135

               
               
               Conread position:236-459
               
               
               Cow position:chr11:63920173-63919944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):57, 75

               
               
               Conread position:237-458
               
               
               Cow position:chr11:14466611-14466377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):55, 7

               
               
               Conread position:238-445
               
               
               Cow position:chr11:33345321-33345541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:238-460
               
               
               Cow position:chr11:41293941-41293705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:246-453
               
               
               Cow position:chr11:71806258-71806048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):49, 66

               
               
               Conread position:254-425
               
               
               Cow position:chr11:75965756-75965576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 62

               
               
               Conread position:254-445
               
               
               Cow position:chr11:46998878-46999074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):38, 66

               
               
               Conread position:254-460
               
               
               Cow position:chr11:83033343-83033129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 168

               
               
               Conread position:258-466
               
               
               Cow position:chr11:31227866-31228081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):112, 30

               
               
               Conread position:270-466
               
               
               Cow position:chr11:35536497-35536707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:277-459
               
               
               Cow position:chr11:22747413-22747221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:313-446
               
               
               Cow position:chr11:18785913-18785781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:325-466
               
               
               Cow position:chr11:35669984-35669834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):45, 90

               
               
               Conread position:2-358
               
               
               Cow position:chr12:24440434-24440795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 7

               
               
               Conread position:2-486
               
               
               Cow position:chr12:36012999-36012516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:330
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):73, 11

               
               
               Conread position:5-234
               
               
               Cow position:chr12:4656947-4656719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):123, 86

               
               
               Conread position:5-290
               
               
               Cow position:chr12:3880632-3880343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):78, 39

               
               
               Conread position:5-290
               
               
               Cow position:chr12:27993201-27992911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):129, 242

               
               
               Conread position:5-290
               
               
               Cow position:chr12:28011275-28010990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 222

               
               
               Conread position:5-305
               
               
               Cow position:chr12:19420307-19420008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 15

               
               
               Conread position:5-306
               
               
               Cow position:chr12:19872065-19872353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:220
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):123, 56

               
               
               Conread position:5-348
               
               
               Cow position:chr12:6227007-6226683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):287, 98

               
               
               Conread position:5-356
               
               
               Cow position:chr12:3568574-3568919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 63

               
               
               Conread position:5-357
               
               
               Cow position:chr12:22047110-22047449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:252
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-357
               
               
               Cow position:chr12:38041129-38040779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):122, 30

               
               
               Conread position:5-358
               
               
               Cow position:chr12:19039993-19039630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 114

               
               
               Conread position:5-358
               
               
               Cow position:chr12:20326399-20326751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 31

               
               
               Conread position:5-407
               
               
               Cow position:chr12:18550520-18550918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-435
               
               
               Cow position:chr12:17716703-17717127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:296
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):47, 179

               
               
               Conread position:5-444
               
               
               Cow position:chr12:29484264-29483812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 63

               
               
               Conread position:5-447
               
               
               Cow position:chr12:17000886-17001337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 73

               
               
               Conread position:5-448
               
               
               Cow position:chr12:36501323-36500870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 85

               
               
               Conread position:5-450
               
               
               Cow position:chr12:30437875-30438317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-451
               
               
               Cow position:chr12:31429932-31429490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 72

               
               
               Conread position:5-452
               
               
               Cow position:chr12:6719948-6720411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 52

               
               
               Conread position:5-452
               
               
               Cow position:chr12:19869096-19869543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 53

               
               
               Conread position:5-458
               
               
               Cow position:chr12:6210543-6210071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 33

               
               
               Conread position:5-460
               
               
               Cow position:chr12:15173443-15173913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-460
               
               
               Cow position:chr12:25560995-25561461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 91

               
               
               Conread position:5-460
               
               
               Cow position:chr12:27563753-27563287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 118

               
               
               Conread position:5-460
               
               
               Cow position:chr12:29969203-29969670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 94

               
               
               Conread position:5-460
               
               
               Cow position:chr12:31228211-31228664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:5-466
               
               
               Cow position:chr12:11835871-11836332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 67

               
               
               Conread position:5-466
               
               
               Cow position:chr12:37770495-37770968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 206

               
               
               Conread position:5-469
               
               
               Cow position:chr12:1889964-1889479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:308
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):83, 229

               
               
               Conread position:5-472
               
               
               Cow position:chr12:7977677-7978140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 33

               
               
               Conread position:5-472
               
               
               Cow position:chr12:42966625-42967096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 108

               
               
               Conread position:5-486
               
               
               Cow position:chr12:12304028-12304498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 54

               
               
               Conread position:6-356
               
               
               Cow position:chr12:11583031-11583368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 80

               
               
               Conread position:6-440
               
               
               Cow position:chr12:30170287-30170738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:304
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):66, 204

               
               
               Conread position:6-445
               
               
               Cow position:chr12:46333003-46333419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:305
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):286, 24

               
               
               Conread position:6-452
               
               
               Cow position:chr12:41083677-41084137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:305
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):78, 288

               
               
               Conread position:6-457
               
               
               Cow position:chr12:6240932-6241408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 238

               
               
               Conread position:6-458
               
               
               Cow position:chr12:3196878-3197356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 140

               
               
               Conread position:6-460
               
               
               Cow position:chr12:7000979-7000515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 133

               
               
               Conread position:6-460
               
               
               Cow position:chr12:18123312-18123759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:6-460
               
               
               Cow position:chr12:30753351-30753809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 122

               
               
               Conread position:6-460
               
               
               Cow position:chr12:30919061-30919515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:322
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):70, 29

               
               
               Conread position:6-460
               
               
               Cow position:chr12:40910665-40910194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 109

               
               
               Conread position:6-475
               
               
               Cow position:chr12:15938640-15938165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 63

               
               
               Conread position:7-445
               
               
               Cow position:chr12:34473974-34473550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:302
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):126, 28

               
               
               Conread position:7-464
               
               
               Cow position:chr12:17881498-17881955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 121

               
               
               Conread position:8-256
               
               
               Cow position:chr12:7108812-7109066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:8-453
               
               
               Cow position:chr12:26869169-26868731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 118

               
               
               Conread position:9-445
               
               
               Cow position:chr12:19691604-19691159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 59

               
               
               Conread position:9-448
               
               
               Cow position:chr12:47803783-47804235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:9-460
               
               
               Cow position:chr12:19865870-19866336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 215

               
               
               Conread position:13-288
               
               
               Cow position:chr12:40158604-40158331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):115, 53

               
               
               Conread position:13-457
               
               
               Cow position:chr12:31959526-31959966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 20

               
               
               Conread position:13-459
               
               
               Cow position:chr12:33323866-33323406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 100

               
               
               Conread position:13-459
               
               
               Cow position:chr12:42254293-42254759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 57

               
               
               Conread position:14-306
               
               
               Cow position:chr12:3039148-3039434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):114, 43

               
               
               Conread position:14-450
               
               
               Cow position:chr12:18944017-18943578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 177

               
               
               Conread position:14-452
               
               
               Cow position:chr12:9143025-9143469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:305
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):100, 230

               
               
               Conread position:15-456
               
               
               Cow position:chr12:44596180-44595722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 85

               
               
               Conread position:21-290
               
               
               Cow position:chr12:35218764-35218495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 92

               
               
               Conread position:25-459
               
               
               Cow position:chr12:2711136-2711588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:26-477
               
               
               Cow position:chr12:5800683-5801150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):266, 98

               
               
               Conread position:30-459
               
               
               Cow position:chr12:4342072-4341655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 163

               
               
               Conread position:33-435
               
               
               Cow position:chr12:9710553-9710143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:280
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):49, 126

               
               
               Conread position:34-489
               
               
               Cow position:chr12:18572290-18572743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 203

               
               
               Conread position:47-343
               
               
               Cow position:chr12:46143488-46143787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 24

               
               
               Conread position:48-446
               
               
               Cow position:chr12:34466329-34465928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):80, 18

               
               
               Conread position:50-290
               
               
               Cow position:chr12:34385845-34385604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):78, 140

               
               
               Conread position:50-434
               
               
               Cow position:chr12:8869217-8868818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 185

               
               
               Conread position:52-228
               
               
               Cow position:chr12:17486466-17486289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:57-434
               
               
               Cow position:chr12:44905313-44905691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 56

               
               
               Conread position:62-460
               
               
               Cow position:chr12:44622038-44622439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 110

               
               
               Conread position:64-460
               
               
               Cow position:chr12:29995779-29995371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 164

               
               
               Conread position:64-466
               
               
               Cow position:chr12:11056559-11056972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):67, 166

               
               
               Conread position:65-445
               
               
               Cow position:chr12:24559036-24559433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):39, 134

               
               
               Conread position:66-435
               
               
               Cow position:chr12:26782566-26782936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:259
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):62, 217

               
               
               Conread position:66-459
               
               
               Cow position:chr12:35771348-35770932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 264

               
               
               Conread position:66-460
               
               
               Cow position:chr12:30745398-30745809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):62, 116

               
               
               Conread position:70-435
               
               
               Cow position:chr12:30728551-30728181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):32, 161

               
               
               Conread position:70-459
               
               
               Cow position:chr12:30805543-30805947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 116

               
               
               Conread position:71-466
               
               
               Cow position:chr12:18518361-18518773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):57, 99

               
               
               Conread position:74-470
               
               
               Cow position:chr12:33457843-33458247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):219, 14

               
               
               Conread position:75-459
               
               
               Cow position:chr12:5714323-5714716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 38

               
               
               Conread position:76-304
               
               
               Cow position:chr12:40270391-40270166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):52, 83

               
               
               Conread position:77-459
               
               
               Cow position:chr12:41159293-41159676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 36

               
               
               Conread position:77-466
               
               
               Cow position:chr12:48415815-48415418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:279
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):51, 37

               
               
               Conread position:77-476
               
               
               Cow position:chr12:16543872-16543464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):290, 103

               
               
               Conread position:78-358
               
               
               Cow position:chr12:28650654-28650937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):113, 49

               
               
               Conread position:78-367
               
               
               Cow position:chr12:3055831-3056122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):8, 155

               
               
               Conread position:78-370
               
               
               Cow position:chr12:1284761-1284470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):50, 114

               
               
               Conread position:78-453
               
               
               Cow position:chr12:44518042-44517653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 66

               
               
               Conread position:78-460
               
               
               Cow position:chr12:8943523-8943134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 73

               
               
               Conread position:79-278
               
               
               Cow position:chr12:3076925-3076719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:79-460
               
               
               Cow position:chr12:42879410-42879784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):54, 15

               
               
               Conread position:80-267
               
               
               Cow position:chr12:36954676-36954488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:80-275
               
               
               Cow position:chr12:46635246-46635050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:80-355
               
               
               Cow position:chr12:24032705-24032982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):48, 119

               
               
               Conread position:80-459
               
               
               Cow position:chr12:6411029-6410643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 117

               
               
               Conread position:80-459
               
               
               Cow position:chr12:20479613-20479247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 37

               
               
               Conread position:81-287
               
               
               Cow position:chr12:1848838-1848628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 117

               
               
               Conread position:81-460
               
               
               Cow position:chr12:14132044-14131680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):52, 106

               
               
               Conread position:82-446
               
               
               Cow position:chr12:28582791-28582434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:263
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):50, 95

               
               
               Conread position:82-460
               
               
               Cow position:chr12:3510266-3510642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 33

               
               
               Conread position:83-362
               
               
               Cow position:chr12:29694335-29694062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):148, 76

               
               
               Conread position:83-460
               
               
               Cow position:chr12:42698521-42698156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:84-444
               
               
               Cow position:chr12:5905760-5906130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 126

               
               
               Conread position:84-448
               
               
               Cow position:chr12:19715324-19714962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:265
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):44, 29

               
               
               Conread position:84-459
               
               
               Cow position:chr12:22881755-22882146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:273
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):43, 29

               
               
               Conread position:85-358
               
               
               Cow position:chr12:25455818-25456099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:86-459
               
               
               Cow position:chr12:34007004-34007389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 186

               
               
               Conread position:86-460
               
               
               Cow position:chr12:9914494-9914881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 94

               
               
               Conread position:86-460
               
               
               Cow position:chr12:31532696-31532314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:276
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):206, 38

               
               
               Conread position:87-349
               
               
               Cow position:chr12:32391551-32391819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):41, 143

               
               
               Conread position:87-459
               
               
               Cow position:chr12:3950645-3950255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 196

               
               
               Conread position:88-445
               
               
               Cow position:chr12:46314988-46314629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):31, 96

               
               
               Conread position:88-460
               
               
               Cow position:chr12:41473802-41474179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 86

               
               
               Conread position:89-491
               
               
               Cow position:chr12:11109478-11109875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):39, 16

               
               
               Conread position:90-331
               
               
               Cow position:chr12:31841150-31841390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):38, 17

               
               
               Conread position:90-456
               
               
               Cow position:chr12:32169245-32169626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):23, 6

               
               
               Conread position:92-434
               
               
               Cow position:chr12:40110100-40110435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:96-285
               
               
               Cow position:chr12:12178636-12178826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):32, 137

               
               
               Conread position:96-448
               
               
               Cow position:chr12:37733062-37732701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 59

               
               
               Conread position:96-450
               
               
               Cow position:chr12:37727862-37728224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 59

               
               
               Conread position:100-460
               
               
               Cow position:chr12:25320642-25321004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):27, 98

               
               
               Conread position:103-339
               
               
               Cow position:chr12:44846115-44846348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 57

               
               
               Conread position:104-355
               
               
               Cow position:chr12:34429420-34429179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 67

               
               
               Conread position:104-460
               
               
               Cow position:chr12:29780179-29779821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):29, 153

               
               
               Conread position:105-447
               
               
               Cow position:chr12:30662226-30661873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 212

               
               
               Conread position:108-452
               
               
               Cow position:chr12:39465305-39465660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):20, 122

               
               
               Conread position:110-393
               
               
               Cow position:chr12:8710560-8710836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 93

               
               
               Conread position:117-491
               
               
               Cow position:chr12:29770835-29770456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 19

               
               
               Conread position:118-290
               
               
               Cow position:chr12:3994686-3994865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:118-339
               
               
               Cow position:chr12:17702496-17702265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):14, 125

               
               
               Conread position:118-373
               
               
               Cow position:chr12:24107801-24107550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):10, 115

               
               
               Conread position:119-304
               
               
               Cow position:chr12:29162073-29161889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 66

               
               
               Conread position:119-445
               
               
               Cow position:chr12:42283099-42282761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):9, 137

               
               
               Conread position:120-358
               
               
               Cow position:chr12:4182957-4182711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:125-452
               
               
               Cow position:chr12:24024046-24023720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):223, 22

               
               
               Conread position:125-491
               
               
               Cow position:chr12:15240979-15240617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):154, 99

               
               
               Conread position:129-368
               
               
               Cow position:chr12:43351589-43351822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):173, 51

               
               
               Conread position:129-460
               
               
               Cow position:chr12:23574519-23574857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):164, 94

               
               
               Conread position:130-442
               
               
               Cow position:chr12:5940093-5940413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):36, 164

               
               
               Conread position:130-453
               
               
               Cow position:chr12:5635698-5635370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 70

               
               
               Conread position:130-453
               
               
               Cow position:chr12:17774555-17774877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):188, 54

               
               
               Conread position:130-453
               
               
               Cow position:chr12:28213268-28213592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):163, 95

               
               
               Conread position:130-460
               
               
               Cow position:chr12:23797853-23798189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):56, 110

               
               
               Conread position:132-489
               
               
               Cow position:chr12:18766229-18765854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):59, 104

               
               
               Conread position:134-444
               
               
               Cow position:chr12:24211170-24211481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):57, 95

               
               
               Conread position:136-429
               
               
               Cow position:chr12:5658320-5658018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):55, 160

               
               
               Conread position:137-456
               
               
               Cow position:chr12:34161174-34161498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):28, 56

               
               
               Conread position:141-386
               
               
               Cow position:chr12:12031074-12030820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:144-457
               
               
               Cow position:chr12:15162914-15163228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):213, 94

               
               
               Conread position:147-356
               
               
               Cow position:chr12:38512075-38511858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:149-458
               
               
               Cow position:chr12:24662884-24663203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):47, 71

               
               
               Conread position:151-412
               
               
               Cow position:chr12:3906239-3906515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:152-414
               
               
               Cow position:chr12:28748706-28748985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 64

               
               
               Conread position:152-460
               
               
               Cow position:chr12:27037677-27037360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 77

               
               
               Conread position:155-353
               
               
               Cow position:chr12:18021368-18021567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:158-460
               
               
               Cow position:chr12:25444701-25445005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 8

               
               
               Conread position:159-373
               
               
               Cow position:chr12:31947902-31948110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:165-459
               
               
               Cow position:chr12:33851140-33851446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 64

               
               
               Conread position:171-428
               
               
               Cow position:chr12:25452653-25452389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):122, 50

               
               
               Conread position:171-445
               
               
               Cow position:chr12:30210273-30210558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):122, 54

               
               
               Conread position:171-445
               
               
               Cow position:chr12:45680062-45680352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):63, 153

               
               
               Conread position:177-460
               
               
               Cow position:chr12:42162836-42163130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):114, 13

               
               
               Conread position:177-466
               
               
               Cow position:chr12:30194502-30194795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:186-434
               
               
               Cow position:chr12:18964121-18963864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):105, 39

               
               
               Conread position:186-459
               
               
               Cow position:chr12:4768732-4769015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):85, 130

               
               
               Conread position:190-469
               
               
               Cow position:chr12:33976010-33976299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):10, 36

               
               
               Conread position:192-460
               
               
               Cow position:chr12:38774428-38774152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):102, 115

               
               
               Conread position:194-442
               
               
               Cow position:chr12:23855649-23855904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):40, 233

               
               
               Conread position:197-431
               
               
               Cow position:chr12:10491089-10491332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 58

               
               
               Conread position:202-463
               
               
               Cow position:chr12:3599931-3599665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):164, 90

               
               
               Conread position:208-445
               
               
               Cow position:chr12:25188015-25188263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):72, 41

               
               
               Conread position:209-444
               
               
               Cow position:chr12:44919863-44920104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):80, 24

               
               
               Conread position:209-466
               
               
               Cow position:chr12:3623521-3623792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:212-445
               
               
               Cow position:chr12:15050787-15050550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):5, 204

               
               
               Conread position:213-459
               
               
               Cow position:chr12:26217990-26217736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):79, 32

               
               
               Conread position:213-466
               
               
               Cow position:chr12:4719778-4720045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:216-426
               
               
               Cow position:chr12:9894618-9894838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:218-454
               
               
               Cow position:chr12:41216046-41215800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):71, 7

               
               
               Conread position:219-465
               
               
               Cow position:chr12:11587611-11587871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):57, 63

               
               
               Conread position:219-466
               
               
               Cow position:chr12:23916681-23916940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:221-460
               
               
               Cow position:chr12:12300761-12301008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):72, 227

               
               
               Conread position:225-481
               
               
               Cow position:chr12:4596309-4596577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):67, 79

               
               
               Conread position:236-464
               
               
               Cow position:chr12:7110054-7110291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):6, 84

               
               
               Conread position:238-437
               
               
               Cow position:chr12:42174277-42174483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 77

               
               
               Conread position:238-460
               
               
               Cow position:chr12:19258136-19258368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:238-467
               
               
               Cow position:chr12:23446579-23446819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):57, 122

               
               
               Conread position:251-460
               
               
               Cow position:chr12:10942155-10942377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:253-491
               
               
               Cow position:chr12:24222646-24222400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):44, 65

               
               
               Conread position:260-452
               
               
               Cow position:chr12:31517294-31517088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:263-460
               
               
               Cow position:chr12:21780046-21780253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):29, 56

               
               
               Conread position:307-467
               
               
               Cow position:chr12:29966036-29966201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 50

               
               
               Conread position:310-469
               
               
               Cow position:chr12:37255952-37256114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):47, 64

               
               
               Conread position:330-460
               
               
               Cow position:chr12:45723268-45723402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:1-374
               
               
               Cow position:chr13:6835483-6835843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):75, 9

               
               
               Conread position:1-459
               
               
               Cow position:chr13:26479890-26480346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 67

               
               
               Conread position:2-234
               
               
               Cow position:chr13:12244690-12244924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:2-290
               
               
               Cow position:chr13:34375580-34375305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):228, 7

               
               
               Conread position:2-373
               
               
               Cow position:chr13:15446367-15445993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:265
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):126, 7

               
               
               Conread position:2-374
               
               
               Cow position:chr13:41253952-41253572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:258
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):73, 123

               
               
               Conread position:2-469
               
               
               Cow position:chr13:21276181-21275707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 250

               
               
               Conread position:3-460
               
               
               Cow position:chr13:37981427-37981887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 124

               
               
               Conread position:4-460
               
               
               Cow position:chr13:21107454-21107002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:308
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):73, 151

               
               
               Conread position:5-205
               
               
               Cow position:chr13:36264287-36264086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:5-205
               
               
               Cow position:chr13:54286447-54286642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 78

               
               
               Conread position:5-227
               
               
               Cow position:chr13:26098465-26098245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):122, 110

               
               
               Conread position:5-228
               
               
               Cow position:chr13:21988782-21989007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):122, 63

               
               
               Conread position:5-287
               
               
               Cow position:chr13:21402472-21402755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):113, 238

               
               
               Conread position:5-289
               
               
               Cow position:chr13:6606697-6606984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 235

               
               
               Conread position:5-290
               
               
               Cow position:chr13:562814-563105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):91, 227

               
               
               Conread position:5-290
               
               
               Cow position:chr13:27027454-27027737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):123, 41

               
               
               Conread position:5-290
               
               
               Cow position:chr13:60690396-60690689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 95

               
               
               Conread position:5-314
               
               
               Cow position:chr13:3003767-3003452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-339
               
               
               Cow position:chr13:15869440-15869109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 65

               
               
               Conread position:5-356
               
               
               Cow position:chr13:5091339-5091700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 41

               
               
               Conread position:5-373
               
               
               Cow position:chr13:19178596-19178224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 70

               
               
               Conread position:5-373
               
               
               Cow position:chr13:26382907-26383283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:254
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):9, 302

               
               
               Conread position:5-374
               
               
               Cow position:chr13:49805291-49804926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 88

               
               
               Conread position:5-407
               
               
               Cow position:chr13:12977882-12977485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:279
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):122, 63

               
               
               Conread position:5-424
               
               
               Cow position:chr13:25531467-25531897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 100

               
               
               Conread position:5-429
               
               
               Cow position:chr13:48627065-48626661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):286, 61

               
               
               Conread position:5-431
               
               
               Cow position:chr13:6153456-6153898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:5-436
               
               
               Cow position:chr13:31814186-31813757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 49

               
               
               Conread position:5-437
               
               
               Cow position:chr13:18835509-18835084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 194

               
               
               Conread position:5-437
               
               
               Cow position:chr13:43138906-43139334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 116

               
               
               Conread position:5-442
               
               
               Cow position:chr13:311755-311313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 223

               
               
               Conread position:5-443
               
               
               Cow position:chr13:10988751-10989195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:299
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):173, 112

               
               
               Conread position:5-445
               
               
               Cow position:chr13:28683677-28683234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 55

               
               
               Conread position:5-452
               
               
               Cow position:chr13:17820938-17821405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 22

               
               
               Conread position:5-452
               
               
               Cow position:chr13:43762494-43762034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 33

               
               
               Conread position:5-453
               
               
               Cow position:chr13:20378019-20378456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:5-457
               
               
               Cow position:chr13:17622607-17622151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 155

               
               
               Conread position:5-457
               
               
               Cow position:chr13:34282003-34281540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 225

               
               
               Conread position:5-458
               
               
               Cow position:chr13:15167139-15166678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:315
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):51, 41

               
               
               Conread position:5-459
               
               
               Cow position:chr13:2414347-2413887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 33

               
               
               Conread position:5-459
               
               
               Cow position:chr13:4553122-4552675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 146

               
               
               Conread position:5-459
               
               
               Cow position:chr13:13321103-13320655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 141

               
               
               Conread position:5-459
               
               
               Cow position:chr13:20666065-20666528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 110

               
               
               Conread position:5-459
               
               
               Cow position:chr13:20879514-20879967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 77

               
               
               Conread position:5-459
               
               
               Cow position:chr13:51941052-51940592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 109

               
               
               Conread position:5-459
               
               
               Cow position:chr13:52057861-52057415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:308
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):115, 63

               
               
               Conread position:5-460
               
               
               Cow position:chr13:1042633-1043107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 286

               
               
               Conread position:5-460
               
               
               Cow position:chr13:2774441-2773982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 63

               
               
               Conread position:5-460
               
               
               Cow position:chr13:12448665-12449131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 110

               
               
               Conread position:5-460
               
               
               Cow position:chr13:12670134-12670594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:323
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 41

               
               
               Conread position:5-460
               
               
               Cow position:chr13:36771099-36771566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 170

               
               
               Conread position:5-460
               
               
               Cow position:chr13:61976642-61977093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 125

               
               
               Conread position:5-464
               
               
               Cow position:chr13:8362423-8362890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 283

               
               
               Conread position:5-464
               
               
               Cow position:chr13:57493861-57494337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-466
               
               
               Cow position:chr13:152266-151812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 99

               
               
               Conread position:5-466
               
               
               Cow position:chr13:6974488-6974009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 170

               
               
               Conread position:5-466
               
               
               Cow position:chr13:15288609-15289072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 39

               
               
               Conread position:5-466
               
               
               Cow position:chr13:34261572-34261082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 213

               
               
               Conread position:5-467
               
               
               Cow position:chr13:46736540-46736066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:316
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):70, 174

               
               
               Conread position:5-469
               
               
               Cow position:chr13:46516385-46515908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 63

               
               
               Conread position:5-480
               
               
               Cow position:chr13:53566907-53566438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:318
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):186, 30

               
               
               Conread position:6-290
               
               
               Cow position:chr13:20683801-20684083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 115

               
               
               Conread position:6-292
               
               
               Cow position:chr13:14215326-14215039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):92, 66

               
               
               Conread position:6-356
               
               
               Cow position:chr13:33517586-33517956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:257
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):48, 236

               
               
               Conread position:6-367
               
               
               Cow position:chr13:17855694-17855330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 47

               
               
               Conread position:6-373
               
               
               Cow position:chr13:42114339-42113971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 53

               
               
               Conread position:6-414
               
               
               Cow position:chr13:30651497-30651091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 156

               
               
               Conread position:6-435
               
               
               Cow position:chr13:17800396-17799962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 95

               
               
               Conread position:6-436
               
               
               Cow position:chr13:22085438-22085865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 62

               
               
               Conread position:6-445
               
               
               Cow position:chr13:14544433-14544007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 46

               
               
               Conread position:6-451
               
               
               Cow position:chr13:16015137-16014677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 182

               
               
               Conread position:6-453
               
               
               Cow position:chr13:6616426-6616895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 237

               
               
               Conread position:6-453
               
               
               Cow position:chr13:8609229-8609683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 88

               
               
               Conread position:6-457
               
               
               Cow position:chr13:971574-972037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 181

               
               
               Conread position:6-465
               
               
               Cow position:chr13:38329954-38329466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 31

               
               
               Conread position:6-467
               
               
               Cow position:chr13:35525892-35526347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 177

               
               
               Conread position:6-469
               
               
               Cow position:chr13:60508801-60509272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 40

               
               
               Conread position:6-470
               
               
               Cow position:chr13:40652255-40651779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 219

               
               
               Conread position:6-474
               
               
               Cow position:chr13:17158542-17159035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 229

               
               
               Conread position:7-450
               
               
               Cow position:chr13:59687548-59688010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:292
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):81, 7

               
               
               Conread position:7-452
               
               
               Cow position:chr13:56154842-56155286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:298
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):17, 57

               
               
               Conread position:7-457
               
               
               Cow position:chr13:10928672-10929128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:302
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):126, 61

               
               
               Conread position:7-458
               
               
               Cow position:chr13:24754205-24753746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 274

               
               
               Conread position:7-469
               
               
               Cow position:chr13:12875664-12876124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 156

               
               
               Conread position:9-306
               
               
               Cow position:chr13:25248825-25249136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):184, 0

               
               
               Conread position:9-330
               
               
               Cow position:chr13:37516815-37517142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:9-409
               
               
               Cow position:chr13:17613665-17613248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:9-435
               
               
               Cow position:chr13:7663110-7663540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 163

               
               
               Conread position:9-444
               
               
               Cow position:chr13:32017204-32017639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:9-446
               
               
               Cow position:chr13:20863699-20864125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):57, 108

               
               
               Conread position:9-448
               
               
               Cow position:chr13:25434810-25435254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 173

               
               
               Conread position:9-449
               
               
               Cow position:chr13:32535970-32535524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:291
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):48, 29

               
               
               Conread position:9-457
               
               
               Cow position:chr13:20563317-20562853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 203

               
               
               Conread position:9-457
               
               
               Cow position:chr13:27524943-27525400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 104

               
               
               Conread position:9-459
               
               
               Cow position:chr13:20605800-20606263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 224

               
               
               Conread position:9-460
               
               
               Cow position:chr13:12546584-12547051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 109

               
               
               Conread position:9-466
               
               
               Cow position:chr13:52585704-52586185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 73

               
               
               Conread position:11-343
               
               
               Cow position:chr13:16270253-16269909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:243
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):30, 141

               
               
               Conread position:14-424
               
               
               Cow position:chr13:20649668-20650094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:295
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):51, 19

               
               
               Conread position:14-445
               
               
               Cow position:chr13:23269899-23270333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 187

               
               
               Conread position:14-459
               
               
               Cow position:chr13:37382125-37381659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 315

               
               
               Conread position:14-465
               
               
               Cow position:chr13:13089336-13088880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 8

               
               
               Conread position:15-459
               
               
               Cow position:chr13:25695455-25695909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 172

               
               
               Conread position:16-304
               
               
               Cow position:chr13:25261480-25261788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):49, 261

               
               
               Conread position:17-266
               
               
               Cow position:chr13:60436572-60436824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:19-451
               
               
               Cow position:chr13:60429770-60430211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 96

               
               
               Conread position:24-446
               
               
               Cow position:chr13:32717567-32717992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):83, 216

               
               
               Conread position:24-469
               
               
               Cow position:chr13:32283423-32282976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 30

               
               
               Conread position:27-460
               
               
               Cow position:chr13:11260547-11260132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 48

               
               
               Conread position:27-460
               
               
               Cow position:chr13:60974376-60973937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 99

               
               
               Conread position:28-469
               
               
               Cow position:chr13:25817813-25817373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 153

               
               
               Conread position:29-342
               
               
               Cow position:chr13:54237644-54237336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):47, 71

               
               
               Conread position:30-460
               
               
               Cow position:chr13:45353340-45352886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:309
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):198, 87

               
               
               Conread position:37-437
               
               
               Cow position:chr13:18989996-18989603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 170

               
               
               Conread position:37-460
               
               
               Cow position:chr13:38872684-38873089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 25

               
               
               Conread position:37-460
               
               
               Cow position:chr13:51821597-51822017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 51

               
               
               Conread position:39-292
               
               
               Cow position:chr13:38485116-38484867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):89, 29

               
               
               Conread position:41-430
               
               
               Cow position:chr13:6759503-6759902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):87, 96

               
               
               Conread position:46-465
               
               
               Cow position:chr13:60967046-60966619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):82, 128

               
               
               Conread position:47-457
               
               
               Cow position:chr13:13766047-13765650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 67

               
               
               Conread position:47-457
               
               
               Cow position:chr13:41807056-41806632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 66

               
               
               Conread position:54-452
               
               
               Cow position:chr13:6079145-6079550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 171

               
               
               Conread position:54-459
               
               
               Cow position:chr13:45726153-45725744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:295
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):73, 59

               
               
               Conread position:58-416
               
               
               Cow position:chr13:18244125-18243763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 17

               
               
               Conread position:60-466
               
               
               Cow position:chr13:19393554-19393139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 18

               
               
               Conread position:62-460
               
               
               Cow position:chr13:15041206-15041616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 280

               
               
               Conread position:62-460
               
               
               Cow position:chr13:18166996-18166589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 130

               
               
               Conread position:62-470
               
               
               Cow position:chr13:46311768-46312164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):14, 131

               
               
               Conread position:66-287
               
               
               Cow position:chr13:24155804-24155583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):19, 49

               
               
               Conread position:66-306
               
               
               Cow position:chr13:22115967-22115724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):19, 49

               
               
               Conread position:66-413
               
               
               Cow position:chr13:15234172-15233830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):62, 48

               
               
               Conread position:66-457
               
               
               Cow position:chr13:17021458-17021865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):62, 169

               
               
               Conread position:67-466
               
               
               Cow position:chr13:21287829-21288238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 124

               
               
               Conread position:69-460
               
               
               Cow position:chr13:9265559-9265971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:274
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):64, 240

               
               
               Conread position:72-460
               
               
               Cow position:chr13:52894398-52894002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 42

               
               
               Conread position:74-465
               
               
               Cow position:chr13:20784842-20784442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:277
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):54, 152

               
               
               Conread position:75-409
               
               
               Cow position:chr13:16024841-16024503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):53, 40

               
               
               Conread position:77-289
               
               
               Cow position:chr13:19556003-19555797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):50, 130

               
               
               Conread position:77-415
               
               
               Cow position:chr13:48251741-48252058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):55, 115

               
               
               Conread position:77-447
               
               
               Cow position:chr13:34995075-34995459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:258
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):56, 152

               
               
               Conread position:77-448
               
               
               Cow position:chr13:16343937-16343562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:249
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):50, 62

               
               
               Conread position:77-456
               
               
               Cow position:chr13:4664610-4664995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:264
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):37, 167

               
               
               Conread position:77-457
               
               
               Cow position:chr13:23479280-23478890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:264
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):51, 136

               
               
               Conread position:77-457
               
               
               Cow position:chr13:23856468-23856071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:274
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):11, 69

               
               
               Conread position:77-459
               
               
               Cow position:chr13:9246965-9246590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 112

               
               
               Conread position:77-460
               
               
               Cow position:chr13:52285066-52284674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:77-466
               
               
               Cow position:chr13:14063277-14063674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:270
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):217, 39

               
               
               Conread position:78-373
               
               
               Cow position:chr13:1780085-1779781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):10, 238

               
               
               Conread position:78-420
               
               
               Cow position:chr13:52879660-52879299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):50, 36

               
               
               Conread position:78-445
               
               
               Cow position:chr13:37985501-37985872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):54, 35

               
               
               Conread position:78-445
               
               
               Cow position:chr13:48037870-48037495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):50, 94

               
               
               Conread position:78-448
               
               
               Cow position:chr13:54095054-54094679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):213, 35

               
               
               Conread position:78-450
               
               
               Cow position:chr13:40722460-40722840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:265
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):148, 129

               
               
               Conread position:78-456
               
               
               Cow position:chr13:25927042-25926651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 219

               
               
               Conread position:78-459
               
               
               Cow position:chr13:35660003-35659619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 126

               
               
               Conread position:78-460
               
               
               Cow position:chr13:23960556-23960945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:265
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):49, 163

               
               
               Conread position:78-460
               
               
               Cow position:chr13:26261544-26261935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):50, 219

               
               
               Conread position:78-466
               
               
               Cow position:chr13:42200868-42200467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 35

               
               
               Conread position:79-306
               
               
               Cow position:chr13:38012610-38012376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:79-373
               
               
               Cow position:chr13:19364493-19364197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):43, 156

               
               
               Conread position:79-403
               
               
               Cow position:chr13:61166208-61166536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):39, 79

               
               
               Conread position:79-445
               
               
               Cow position:chr13:12614509-12614125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:79-453
               
               
               Cow position:chr13:24715486-24715103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 35

               
               
               Conread position:79-460
               
               
               Cow position:chr13:23166848-23167244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 36

               
               
               Conread position:80-425
               
               
               Cow position:chr13:8201237-8201591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:251
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):32, 159

               
               
               Conread position:80-446
               
               
               Cow position:chr13:11460871-11460504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):52, 34

               
               
               Conread position:80-452
               
               
               Cow position:chr13:13501374-13501752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):109, 46

               
               
               Conread position:81-289
               
               
               Cow position:chr13:37521133-37521341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):47, 144

               
               
               Conread position:81-460
               
               
               Cow position:chr13:3315426-3315818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 219

               
               
               Conread position:82-460
               
               
               Cow position:chr13:45022962-45023350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 23

               
               
               Conread position:83-456
               
               
               Cow position:chr13:21241847-21242223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:262
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):45, 154

               
               
               Conread position:83-460
               
               
               Cow position:chr13:5278943-5279345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:84-286
               
               
               Cow position:chr13:12283079-12282876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):105, 42

               
               
               Conread position:84-405
               
               
               Cow position:chr13:33900681-33900987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):218, 15

               
               
               Conread position:84-470
               
               
               Cow position:chr13:8524377-8524769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 89

               
               
               Conread position:85-445
               
               
               Cow position:chr13:55673962-55674336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 145

               
               
               Conread position:85-460
               
               
               Cow position:chr13:12926033-12925636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:85-460
               
               
               Cow position:chr13:20705960-20706348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:86-437
               
               
               Cow position:chr13:15974852-15974497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):42, 94

               
               
               Conread position:86-445
               
               
               Cow position:chr13:22886750-22887117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 80

               
               
               Conread position:86-460
               
               
               Cow position:chr13:7076498-7076112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 116

               
               
               Conread position:87-373
               
               
               Cow position:chr13:2462991-2463283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):41, 6

               
               
               Conread position:87-469
               
               
               Cow position:chr13:10924665-10925071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):33, 42

               
               
               Conread position:88-331
               
               
               Cow position:chr13:2339669-2339430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:88-358
               
               
               Cow position:chr13:20041717-20042003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:88-486
               
               
               Cow position:chr13:13176889-13176479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:277
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):40, 78

               
               
               Conread position:90-436
               
               
               Cow position:chr13:6060770-6061127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):101, 83

               
               
               Conread position:90-453
               
               
               Cow position:chr13:24586285-24585910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):38, 142

               
               
               Conread position:91-459
               
               
               Cow position:chr13:43919018-43919404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:256
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:91-467
               
               
               Cow position:chr13:43184635-43185031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:277
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):23, 120

               
               
               Conread position:91-470
               
               
               Cow position:chr13:25547356-25547735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:262
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):37, 89

               
               
               Conread position:92-288
               
               
               Cow position:chr13:17816007-17815808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):40, 137

               
               
               Conread position:92-290
               
               
               Cow position:chr13:22025466-22025671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 9

               
               
               Conread position:92-290
               
               
               Cow position:chr13:34556096-34556299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:92-465
               
               
               Cow position:chr13:23667498-23667101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):36, 21

               
               
               Conread position:94-446
               
               
               Cow position:chr13:20679580-20679208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 82

               
               
               Conread position:96-357
               
               
               Cow position:chr13:54093972-54093713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):32, 84

               
               
               Conread position:96-451
               
               
               Cow position:chr13:30026345-30025995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:256
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):18, 85

               
               
               Conread position:96-466
               
               
               Cow position:chr13:24369817-24369431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:272
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):23, 144

               
               
               Conread position:96-466
               
               
               Cow position:chr13:47963969-47964326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:260
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):32, 60

               
               
               Conread position:97-362
               
               
               Cow position:chr13:51108720-51108456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):35, 17

               
               
               Conread position:97-412
               
               
               Cow position:chr13:11954883-11955212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):28, 16

               
               
               Conread position:98-450
               
               
               Cow position:chr13:12207273-12206916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 112

               
               
               Conread position:100-453
               
               
               Cow position:chr13:17745470-17745112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):20, 129

               
               
               Conread position:101-287
               
               
               Cow position:chr13:20536727-20536541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):27, 71

               
               
               Conread position:101-460
               
               
               Cow position:chr13:17439539-17439911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):27, 129

               
               
               Conread position:103-459
               
               
               Cow position:chr13:15192669-15193028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 107

               
               
               Conread position:104-446
               
               
               Cow position:chr13:20839792-20839437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):6, 140

               
               
               Conread position:104-458
               
               
               Cow position:chr13:37818536-37818892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):188, 20

               
               
               Conread position:105-460
               
               
               Cow position:chr13:15281715-15282079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:106-436
               
               
               Cow position:chr13:10845815-10845485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 118

               
               
               Conread position:106-452
               
               
               Cow position:chr13:45073713-45074049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 66

               
               
               Conread position:106-453
               
               
               Cow position:chr13:9593727-9593370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:107-466
               
               
               Cow position:chr13:5263065-5263432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):21, 150

               
               
               Conread position:108-358
               
               
               Cow position:chr13:11147526-11147270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):20, 103

               
               
               Conread position:108-466
               
               
               Cow position:chr13:18491814-18491445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):17, 36

               
               
               Conread position:109-459
               
               
               Cow position:chr13:18172559-18172192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):19, 94

               
               
               Conread position:117-434
               
               
               Cow position:chr13:51014969-51015294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):11, 184

               
               
               Conread position:118-414
               
               
               Cow position:chr13:52227890-52228197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 69

               
               
               Conread position:118-460
               
               
               Cow position:chr13:37521522-37521887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:254
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):10, 112

               
               
               Conread position:118-461
               
               
               Cow position:chr13:37804089-37803747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 37

               
               
               Conread position:118-466
               
               
               Cow position:chr13:2192918-2192582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):9, 74

               
               
               Conread position:130-436
               
               
               Cow position:chr13:8652240-8652561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):16, 81

               
               
               Conread position:130-445
               
               
               Cow position:chr13:19223846-19223527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):61, 99

               
               
               Conread position:130-454
               
               
               Cow position:chr13:9643685-9644029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):61, 146

               
               
               Conread position:130-460
               
               
               Cow position:chr13:24230410-24230072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 189

               
               
               Conread position:130-460
               
               
               Cow position:chr13:52749291-52749613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):240, 13

               
               
               Conread position:130-463
               
               
               Cow position:chr13:37592741-37593095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:253
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):83, 76

               
               
               Conread position:130-463
               
               
               Cow position:chr13:59170854-59170505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):70, 44

               
               
               Conread position:130-465
               
               
               Cow position:chr13:48598101-48597757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):83, 49

               
               
               Conread position:130-467
               
               
               Cow position:chr13:46112164-46111819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):103, 61

               
               
               Conread position:132-440
               
               
               Cow position:chr13:23512554-23512247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):225, 43

               
               
               Conread position:132-460
               
               
               Cow position:chr13:19581892-19582227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 77

               
               
               Conread position:132-469
               
               
               Cow position:chr13:19022473-19022116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):59, 45

               
               
               Conread position:136-453
               
               
               Cow position:chr13:15991031-15991367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 189

               
               
               Conread position:136-459
               
               
               Cow position:chr13:21283515-21283846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):53, 93

               
               
               Conread position:136-464
               
               
               Cow position:chr13:57475225-57475552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):154, 246

               
               
               Conread position:137-460
               
               
               Cow position:chr13:61990144-61990465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):54, 181

               
               
               Conread position:137-466
               
               
               Cow position:chr13:15195019-15195354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):92, 32

               
               
               Conread position:138-460
               
               
               Cow position:chr13:14771650-14771309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):49, 306

               
               
               Conread position:141-460
               
               
               Cow position:chr13:2404929-2404611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 88

               
               
               Conread position:142-452
               
               
               Cow position:chr13:39368141-39367824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):21, 38

               
               
               Conread position:142-460
               
               
               Cow position:chr13:47186409-47186088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):233, 83

               
               
               Conread position:143-435
               
               
               Cow position:chr13:13339048-13338738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):48, 178

               
               
               Conread position:143-443
               
               
               Cow position:chr13:55583383-55583071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):49, 278

               
               
               Conread position:144-381
               
               
               Cow position:chr13:62474616-62474855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 85

               
               
               Conread position:145-460
               
               
               Cow position:chr13:19188486-19188158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:145-460
               
               
               Cow position:chr13:52055414-52055735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:146-466
               
               
               Cow position:chr13:5758164-5758490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:236
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):148, 45

               
               
               Conread position:147-465
               
               
               Cow position:chr13:966257-965953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 82

               
               
               Conread position:159-449
               
               
               Cow position:chr13:29831266-29831569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):54, 15

               
               
               Conread position:163-373
               
               
               Cow position:chr13:14870693-14870484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):18, 11

               
               
               Conread position:164-466
               
               
               Cow position:chr13:28689633-28689315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):27, 47

               
               
               Conread position:165-460
               
               
               Cow position:chr13:4420509-4420187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:169-457
               
               
               Cow position:chr13:9900307-9900019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):64, 50

               
               
               Conread position:171-453
               
               
               Cow position:chr13:15110476-15110178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:171-465
               
               
               Cow position:chr13:20580061-20579762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):144, 43

               
               
               Conread position:181-457
               
               
               Cow position:chr13:26698351-26698637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 58

               
               
               Conread position:181-459
               
               
               Cow position:chr13:8374626-8374915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):111, 44

               
               
               Conread position:181-465
               
               
               Cow position:chr13:54388875-54389173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):115, 31

               
               
               Conread position:186-443
               
               
               Cow position:chr13:20360411-20360153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):114, 55

               
               
               Conread position:187-453
               
               
               Cow position:chr13:17568959-17569238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:187-460
               
               
               Cow position:chr13:37640726-37640447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 58

               
               
               Conread position:188-460
               
               
               Cow position:chr13:51115889-51116168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):105, 37

               
               
               Conread position:192-469
               
               
               Cow position:chr13:18929665-18929377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):45, 5

               
               
               Conread position:194-469
               
               
               Cow position:chr13:25579054-25579342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 67

               
               
               Conread position:197-460
               
               
               Cow position:chr13:6389510-6389249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):34, 41

               
               
               Conread position:198-460
               
               
               Cow position:chr13:11591875-11591609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):95, 56

               
               
               Conread position:212-457
               
               
               Cow position:chr13:6441986-6442245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:212-457
               
               
               Cow position:chr13:18995243-18994986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:212-460
               
               
               Cow position:chr13:14576321-14576070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):157, 13

               
               
               Conread position:220-460
               
               
               Cow position:chr13:55728006-55727759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):79, 17

               
               
               Conread position:224-459
               
               
               Cow position:chr13:1569027-1568790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):68, 123

               
               
               Conread position:225-469
               
               
               Cow position:chr13:54128490-54128747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 214

               
               
               Conread position:229-460
               
               
               Cow position:chr13:20137923-20137676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:233-460
               
               
               Cow position:chr13:3211647-3211405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:238-458
               
               
               Cow position:chr13:17110309-17110086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):58, 16

               
               
               Conread position:238-465
               
               
               Cow position:chr13:56034769-56035009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:245-466
               
               
               Cow position:chr13:49796099-49795885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):136, 49

               
               
               Conread position:246-448
               
               
               Cow position:chr13:185613-185399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:254-458
               
               
               Cow position:chr13:827316-827105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:255-453
               
               
               Cow position:chr13:62008185-62007971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:258-459
               
               
               Cow position:chr13:5006062-5005858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):109, 45

               
               
               Conread position:260-459
               
               
               Cow position:chr13:17563804-17563598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):61, 53

               
               
               Conread position:266-461
               
               
               Cow position:chr13:17838011-17837805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):26, 51

               
               
               Conread position:310-460
               
               
               Cow position:chr13:51813921-51814075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:317-452
               
               
               Cow position:chr13:47243547-47243687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:324-458
               
               
               Cow position:chr13:6486250-6486389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:347-460
               
               
               Cow position:chr13:563390-563504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:90
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:361-458
               
               
               Cow position:chr13:57446162-57446260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:2-358
               
               
               Cow position:chr14:24992195-24991846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 11

               
               
               Conread position:2-373
               
               
               Cow position:chr14:41756641-41756273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:257
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):126, 8

               
               
               Conread position:2-458
               
               
               Cow position:chr14:45605472-45605014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 11

               
               
               Conread position:3-460
               
               
               Cow position:chr14:41479276-41479750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 287

               
               
               Conread position:5-232
               
               
               Cow position:chr14:19513007-19513223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):122, 38

               
               
               Conread position:5-286
               
               
               Cow position:chr14:24894138-24893855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:5-288
               
               
               Cow position:chr14:46074967-46074679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):122, 98

               
               
               Conread position:5-290
               
               
               Cow position:chr14:8754704-8754423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 15

               
               
               Conread position:5-290
               
               
               Cow position:chr14:27848581-27848295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 224

               
               
               Conread position:5-302
               
               
               Cow position:chr14:41211864-41211570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):227, 19

               
               
               Conread position:5-310
               
               
               Cow position:chr14:12483930-12484228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):79, 104

               
               
               Conread position:5-343
               
               
               Cow position:chr14:22381173-22381514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 229

               
               
               Conread position:5-349
               
               
               Cow position:chr14:35650821-35651160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 234

               
               
               Conread position:5-353
               
               
               Cow position:chr14:3878832-3878490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):127, 22

               
               
               Conread position:5-353
               
               
               Cow position:chr14:29772150-29771803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):122, 169

               
               
               Conread position:5-355
               
               
               Cow position:chr14:13582391-13582725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):122, 68

               
               
               Conread position:5-358
               
               
               Cow position:chr14:19222262-19221902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 111

               
               
               Conread position:5-361
               
               
               Cow position:chr14:50027587-50027245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:261
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):9, 64

               
               
               Conread position:5-373
               
               
               Cow position:chr14:13006885-13006513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 120

               
               
               Conread position:5-373
               
               
               Cow position:chr14:33326014-33326386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 134

               
               
               Conread position:5-416
               
               
               Cow position:chr14:28988071-28987662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 11

               
               
               Conread position:5-431
               
               
               Cow position:chr14:41471589-41472027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:5-442
               
               
               Cow position:chr14:39779134-39778684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 233

               
               
               Conread position:5-444
               
               
               Cow position:chr14:36554775-36555216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 61

               
               
               Conread position:5-444
               
               
               Cow position:chr14:50363177-50362724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 110

               
               
               Conread position:5-445
               
               
               Cow position:chr14:12519951-12520373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 90

               
               
               Conread position:5-445
               
               
               Cow position:chr14:21964497-21964066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 71

               
               
               Conread position:5-450
               
               
               Cow position:chr14:7960141-7959711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 51

               
               
               Conread position:5-453
               
               
               Cow position:chr14:33247045-33247508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 188

               
               
               Conread position:5-454
               
               
               Cow position:chr14:38921314-38920872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 49

               
               
               Conread position:5-456
               
               
               Cow position:chr14:39618004-39618458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:311
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):123, 49

               
               
               Conread position:5-457
               
               
               Cow position:chr14:42330733-42330270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 33

               
               
               Conread position:5-460
               
               
               Cow position:chr14:13385754-13385281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 266

               
               
               Conread position:5-460
               
               
               Cow position:chr14:20712301-20712775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 362

               
               
               Conread position:5-460
               
               
               Cow position:chr14:21357943-21357472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 25

               
               
               Conread position:5-460
               
               
               Cow position:chr14:22583519-22583067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 108

               
               
               Conread position:5-460
               
               
               Cow position:chr14:25779477-25779017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 227

               
               
               Conread position:5-460
               
               
               Cow position:chr14:26441957-26442428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 226

               
               
               Conread position:5-464
               
               
               Cow position:chr14:14317262-14316796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 199

               
               
               Conread position:5-464
               
               
               Cow position:chr14:20666644-20667100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-465
               
               
               Cow position:chr14:17755940-17755477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 178

               
               
               Conread position:5-466
               
               
               Cow position:chr14:43046522-43046076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 41

               
               
               Conread position:5-467
               
               
               Cow position:chr14:18940930-18941380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 36

               
               
               Conread position:5-468
               
               
               Cow position:chr14:19618378-19618844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 32

               
               
               Conread position:5-469
               
               
               Cow position:chr14:20016327-20016802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 47

               
               
               Conread position:5-469
               
               
               Cow position:chr14:28304402-28304879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 86

               
               
               Conread position:5-486
               
               
               Cow position:chr14:8784556-8784089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):364, 108

               
               
               Conread position:6-233
               
               
               Cow position:chr14:44557457-44557681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):122, 24

               
               
               Conread position:6-290
               
               
               Cow position:chr14:46735696-46735399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):77, 29

               
               
               Conread position:6-336
               
               
               Cow position:chr14:47584269-47584611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:6-350
               
               
               Cow position:chr14:11982033-11981669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:6-352
               
               
               Cow position:chr14:6418938-6419272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:244
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):286, 97

               
               
               Conread position:6-356
               
               
               Cow position:chr14:33828524-33828188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 54

               
               
               Conread position:6-385
               
               
               Cow position:chr14:38295912-38296285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:273
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):121, 59

               
               
               Conread position:6-414
               
               
               Cow position:chr14:20467733-20468135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:270
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):186, 119

               
               
               Conread position:6-458
               
               
               Cow position:chr14:41211249-41210771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 237

               
               
               Conread position:6-459
               
               
               Cow position:chr14:35420380-35420849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 63

               
               
               Conread position:6-466
               
               
               Cow position:chr14:6599573-6600049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 60

               
               
               Conread position:6-466
               
               
               Cow position:chr14:16237127-16237610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 121

               
               
               Conread position:6-466
               
               
               Cow position:chr14:50589028-50589488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:324
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):126, 64

               
               
               Conread position:7-355
               
               
               Cow position:chr14:33462534-33462190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):121, 61

               
               
               Conread position:7-436
               
               
               Cow position:chr14:35544137-35544566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 39

               
               
               Conread position:7-458
               
               
               Cow position:chr14:20640242-20640712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 235

               
               
               Conread position:7-459
               
               
               Cow position:chr14:22989413-22988949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 220

               
               
               Conread position:7-460
               
               
               Cow position:chr14:15054615-15055077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 39

               
               
               Conread position:9-436
               
               
               Cow position:chr14:25403570-25403997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 15

               
               
               Conread position:10-367
               
               
               Cow position:chr14:44742011-44742366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):164, 105

               
               
               Conread position:10-456
               
               
               Cow position:chr14:14621810-14622259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 103

               
               
               Conread position:10-458
               
               
               Cow position:chr14:18308935-18309391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 12

               
               
               Conread position:10-460
               
               
               Cow position:chr14:8102152-8101707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 66

               
               
               Conread position:10-484
               
               
               Cow position:chr14:18904227-18904716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 277

               
               
               Conread position:13-290
               
               
               Cow position:chr14:5501779-5502067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:13-453
               
               
               Cow position:chr14:19863075-19863513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 31

               
               
               Conread position:13-468
               
               
               Cow position:chr14:20600754-20600291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 165

               
               
               Conread position:14-443
               
               
               Cow position:chr14:32371377-32371809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):177, 19

               
               
               Conread position:14-460
               
               
               Cow position:chr14:6735499-6735948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:20-459
               
               
               Cow position:chr14:48427442-48426990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 194

               
               
               Conread position:24-460
               
               
               Cow position:chr14:41749402-41749845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 155

               
               
               Conread position:25-385
               
               
               Cow position:chr14:21284987-21284617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 46

               
               
               Conread position:26-460
               
               
               Cow position:chr14:41809292-41809740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 140

               
               
               Conread position:30-447
               
               
               Cow position:chr14:21018469-21018041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:276
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:30-459
               
               
               Cow position:chr14:39926541-39926123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 55

               
               
               Conread position:30-460
               
               
               Cow position:chr14:46965916-46965509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:299
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):55, 85

               
               
               Conread position:34-279
               
               
               Cow position:chr14:19207216-19206964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:37-398
               
               
               Cow position:chr14:7291140-7290776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:267
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):91, 22

               
               
               Conread position:37-490
               
               
               Cow position:chr14:40433271-40432808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):8, 103

               
               
               Conread position:38-436
               
               
               Cow position:chr14:43036221-43035840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:39-279
               
               
               Cow position:chr14:25695727-25695486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):89, 138

               
               
               Conread position:42-465
               
               
               Cow position:chr14:26432897-26433333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:296
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):86, 188

               
               
               Conread position:46-443
               
               
               Cow position:chr14:49086646-49086238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:271
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):16, 71

               
               
               Conread position:48-464
               
               
               Cow position:chr14:18345396-18345821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 15

               
               
               Conread position:50-460
               
               
               Cow position:chr14:44848051-44848454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:276
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):77, 23

               
               
               Conread position:57-287
               
               
               Cow position:chr14:11641247-11641472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):71, 25

               
               
               Conread position:62-467
               
               
               Cow position:chr14:24237142-24236730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:282
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):71, 55

               
               
               Conread position:65-424
               
               
               Cow position:chr14:22967072-22966706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 48

               
               
               Conread position:66-287
               
               
               Cow position:chr14:40183364-40183137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):62, 127

               
               
               Conread position:66-460
               
               
               Cow position:chr14:49021584-49021985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 49

               
               
               Conread position:74-414
               
               
               Cow position:chr14:20932930-20932575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):53, 124

               
               
               Conread position:74-445
               
               
               Cow position:chr14:25385580-25385957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):53, 39

               
               
               Conread position:77-283
               
               
               Cow position:chr14:44878477-44878685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 74

               
               
               Conread position:77-353
               
               
               Cow position:chr14:14280726-14280440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):51, 68

               
               
               Conread position:77-442
               
               
               Cow position:chr14:48412566-48412950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:264
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:77-448
               
               
               Cow position:chr14:23107635-23107249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:250
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):108, 51

               
               
               Conread position:77-452
               
               
               Cow position:chr14:14187642-14187253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 115

               
               
               Conread position:77-460
               
               
               Cow position:chr14:19851611-19852021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):30, 142

               
               
               Conread position:77-460
               
               
               Cow position:chr14:41128199-41127817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 38

               
               
               Conread position:77-476
               
               
               Cow position:chr14:33773744-33774152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:78-357
               
               
               Cow position:chr14:27305464-27305175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):44, 113

               
               
               Conread position:78-413
               
               
               Cow position:chr14:3564581-3564245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 52

               
               
               Conread position:78-429
               
               
               Cow position:chr14:12856902-12856545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):50, 8

               
               
               Conread position:78-448
               
               
               Cow position:chr14:11614909-11615295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:253
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):10, 154

               
               
               Conread position:78-452
               
               
               Cow position:chr14:23712994-23712604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):50, 146

               
               
               Conread position:78-460
               
               
               Cow position:chr14:10078565-10078183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):216, 46

               
               
               Conread position:78-460
               
               
               Cow position:chr14:19593832-19594224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:282
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):50, 117

               
               
               Conread position:78-465
               
               
               Cow position:chr14:39433956-39434350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):31, 18

               
               
               Conread position:78-469
               
               
               Cow position:chr14:45677531-45677137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):50, 93

               
               
               Conread position:79-354
               
               
               Cow position:chr14:15518072-15518348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):112, 21

               
               
               Conread position:79-437
               
               
               Cow position:chr14:35018449-35018816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:251
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):49, 147

               
               
               Conread position:79-449
               
               
               Cow position:chr14:35700738-35700354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 179

               
               
               Conread position:79-452
               
               
               Cow position:chr14:5836211-5835833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 151

               
               
               Conread position:79-453
               
               
               Cow position:chr14:14466172-14466535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 37

               
               
               Conread position:79-469
               
               
               Cow position:chr14:5221980-5222377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):53, 130

               
               
               Conread position:80-448
               
               
               Cow position:chr14:30662293-30661924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 243

               
               
               Conread position:80-461
               
               
               Cow position:chr14:36709428-36709036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:82-356
               
               
               Cow position:chr14:25231345-25231624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):46, 110

               
               
               Conread position:82-366
               
               
               Cow position:chr14:7482359-7482072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):46, 88

               
               
               Conread position:82-448
               
               
               Cow position:chr14:38355487-38355114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:83-278
               
               
               Cow position:chr14:34330842-34330651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):45, 97

               
               
               Conread position:83-458
               
               
               Cow position:chr14:5630466-5630077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 130

               
               
               Conread position:84-414
               
               
               Cow position:chr14:15913252-15913579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):28, 34

               
               
               Conread position:84-460
               
               
               Cow position:chr14:4991293-4990916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:269
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):44, 72

               
               
               Conread position:84-481
               
               
               Cow position:chr14:16834632-16834216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:290
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:85-446
               
               
               Cow position:chr14:32452562-32452177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:86-309
               
               
               Cow position:chr14:19624390-19624158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:87-460
               
               
               Cow position:chr14:37131957-37131574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):41, 143

               
               
               Conread position:88-304
               
               
               Cow position:chr14:12613805-12614016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):40, 19

               
               
               Conread position:88-457
               
               
               Cow position:chr14:48740588-48740952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):40, 55

               
               
               Conread position:90-450
               
               
               Cow position:chr14:13810233-13809863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:253
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):38, 94

               
               
               Conread position:91-456
               
               
               Cow position:chr14:10858726-10858350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:260
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):41, 187

               
               
               Conread position:92-466
               
               
               Cow position:chr14:3195145-3194773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):27, 69

               
               
               Conread position:93-445
               
               
               Cow position:chr14:24922399-24922029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):35, 350

               
               
               Conread position:97-290
               
               
               Cow position:chr14:8006049-8006232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):136, 42

               
               
               Conread position:97-436
               
               
               Cow position:chr14:40034259-40033933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):31, 88

               
               
               Conread position:98-456
               
               
               Cow position:chr14:24981743-24981377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 70

               
               
               Conread position:100-466
               
               
               Cow position:chr14:47672597-47672974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 53

               
               
               Conread position:102-467
               
               
               Cow position:chr14:6541438-6541819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):26, 11

               
               
               Conread position:103-459
               
               
               Cow position:chr14:7695533-7695181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 95

               
               
               Conread position:105-448
               
               
               Cow position:chr14:37884130-37884473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):23, 132

               
               
               Conread position:105-466
               
               
               Cow position:chr14:36289535-36289888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:106-431
               
               
               Cow position:chr14:48689808-48689474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):22, 9

               
               
               Conread position:106-460
               
               
               Cow position:chr14:19129791-19129420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:111-436
               
               
               Cow position:chr14:50055676-50055337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):17, 207

               
               
               Conread position:116-476
               
               
               Cow position:chr14:19372613-19372235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):12, 122

               
               
               Conread position:128-290
               
               
               Cow position:chr14:26470886-26470722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):67, 58

               
               
               Conread position:129-437
               
               
               Cow position:chr14:20384725-20385048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):13, 192

               
               
               Conread position:130-457
               
               
               Cow position:chr14:40165676-40165342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):59, 41

               
               
               Conread position:130-459
               
               
               Cow position:chr14:28114928-28115271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):58, 99

               
               
               Conread position:130-459
               
               
               Cow position:chr14:33309254-33309587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:241
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):87, 60

               
               
               Conread position:130-460
               
               
               Cow position:chr14:1645934-1646270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):61, 99

               
               
               Conread position:130-466
               
               
               Cow position:chr14:6175838-6175505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 256

               
               
               Conread position:130-480
               
               
               Cow position:chr14:34984119-34983759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):61, 97

               
               
               Conread position:131-455
               
               
               Cow position:chr14:33338226-33338563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 95

               
               
               Conread position:133-419
               
               
               Cow position:chr14:29030080-29029783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):135, 33

               
               
               Conread position:133-466
               
               
               Cow position:chr14:10721483-10721799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):159, 44

               
               
               Conread position:134-468
               
               
               Cow position:chr14:1977828-1978167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):57, 93

               
               
               Conread position:135-357
               
               
               Cow position:chr14:11846751-11846520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:135-459
               
               
               Cow position:chr14:16033257-16032927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:136-436
               
               
               Cow position:chr14:27919489-27919795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):88, 82

               
               
               Conread position:136-458
               
               
               Cow position:chr14:24387700-24387357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):57, 93

               
               
               Conread position:138-373
               
               
               Cow position:chr14:33643544-33643771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):161, 53

               
               
               Conread position:141-460
               
               
               Cow position:chr14:8750318-8749991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):78, 68

               
               
               Conread position:144-457
               
               
               Cow position:chr14:20110479-20110805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):45, 85

               
               
               Conread position:147-456
               
               
               Cow position:chr14:37447240-37447544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):146, 7

               
               
               Conread position:149-414
               
               
               Cow position:chr14:26190860-26191144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):42, 109

               
               
               Conread position:151-470
               
               
               Cow position:chr14:26490510-26490840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):152, 58

               
               
               Conread position:163-456
               
               
               Cow position:chr14:38747884-38747594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):130, 48

               
               
               Conread position:165-368
               
               
               Cow position:chr14:14581085-14580883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:165-459
               
               
               Cow position:chr14:33830516-33830215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):127, 143

               
               
               Conread position:169-444
               
               
               Cow position:chr14:19394575-19394293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):130, 231

               
               
               Conread position:178-447
               
               
               Cow position:chr14:48961789-48961509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):13, 142

               
               
               Conread position:182-432
               
               
               Cow position:chr14:46973638-46973381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):110, 8

               
               
               Conread position:187-459
               
               
               Cow position:chr14:24608163-24607885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):100, 38

               
               
               Conread position:191-458
               
               
               Cow position:chr14:4877038-4877314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):101, 130

               
               
               Conread position:212-445
               
               
               Cow position:chr14:4202921-4203169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:212-456
               
               
               Cow position:chr14:12035580-12035327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:212-466
               
               
               Cow position:chr14:12511729-12511988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):80, 57

               
               
               Conread position:213-453
               
               
               Cow position:chr14:46998217-46997960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:217-489
               
               
               Cow position:chr14:46654378-46654655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):75, 8

               
               
               Conread position:223-460
               
               
               Cow position:chr14:42437188-42436939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:223-463
               
               
               Cow position:chr14:35503526-35503269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:224-469
               
               
               Cow position:chr14:23424418-23424168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):68, 92

               
               
               Conread position:224-469
               
               
               Cow position:chr14:23443179-23442929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):68, 92

               
               
               Conread position:225-450
               
               
               Cow position:chr14:27275321-27275087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):60, 96

               
               
               Conread position:225-453
               
               
               Cow position:chr14:22941562-22941807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:225-460
               
               
               Cow position:chr14:18763285-18763520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):67, 29

               
               
               Conread position:238-453
               
               
               Cow position:chr14:41252842-41253071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:238-458
               
               
               Cow position:chr14:11056593-11056814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):131, 65

               
               
               Conread position:238-466
               
               
               Cow position:chr14:40754097-40754341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 201

               
               
               Conread position:241-452
               
               
               Cow position:chr14:37422644-37422860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):51, 151

               
               
               Conread position:241-459
               
               
               Cow position:chr14:12954240-12954469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:253-443
               
               
               Cow position:chr14:23478952-23478758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 65

               
               
               Conread position:255-456
               
               
               Cow position:chr14:16352475-16352267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 150

               
               
               Conread position:255-457
               
               
               Cow position:chr14:34331197-34331409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:258-452
               
               
               Cow position:chr14:12127285-12127488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 49

               
               
               Conread position:260-450
               
               
               Cow position:chr14:4282383-4282582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:263-453
               
               
               Cow position:chr14:1796312-1796114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 169

               
               
               Conread position:269-459
               
               
               Cow position:chr14:48900288-48900088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):40, 144

               
               
               Conread position:269-467
               
               
               Cow position:chr14:29965133-29964925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):26, 47

               
               
               Conread position:272-466
               
               
               Cow position:chr14:37902113-37901903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:314-460
               
               
               Cow position:chr14:20466998-20466849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 42

               
               
               Conread position:2-480
               
               
               Cow position:chr15:5536178-5535696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 7

               
               
               Conread position:4-445
               
               
               Cow position:chr15:6530410-6530872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 107

               
               
               Conread position:4-448
               
               
               Cow position:chr15:40999624-41000098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 239

               
               
               Conread position:4-477
               
               
               Cow position:chr15:6970405-6969935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 5

               
               
               Conread position:5-270
               
               
               Cow position:chr15:18284669-18284398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):73, 109

               
               
               Conread position:5-289
               
               
               Cow position:chr15:20117534-20117253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-290
               
               
               Cow position:chr15:1128409-1128136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):179, 41

               
               
               Conread position:5-352
               
               
               Cow position:chr15:15707692-15708037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):67, 82

               
               
               Conread position:5-419
               
               
               Cow position:chr15:23567699-23568125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:290
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):82, 45

               
               
               Conread position:5-441
               
               
               Cow position:chr15:47842839-47843271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 98

               
               
               Conread position:5-444
               
               
               Cow position:chr15:608583-608123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 78

               
               
               Conread position:5-445
               
               
               Cow position:chr15:6226770-6227206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 110

               
               
               Conread position:5-445
               
               
               Cow position:chr15:16112829-16112376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 72

               
               
               Conread position:5-445
               
               
               Cow position:chr15:23798095-23798554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 65

               
               
               Conread position:5-446
               
               
               Cow position:chr15:10336178-10335732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):292, 110

               
               
               Conread position:5-446
               
               
               Cow position:chr15:17233611-17233168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 50

               
               
               Conread position:5-448
               
               
               Cow position:chr15:20352266-20351807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 231

               
               
               Conread position:5-448
               
               
               Cow position:chr15:30047109-30047574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 228

               
               
               Conread position:5-449
               
               
               Cow position:chr15:15041008-15041449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:300
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):114, 7

               
               
               Conread position:5-452
               
               
               Cow position:chr15:22168490-22168041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 293

               
               
               Conread position:5-453
               
               
               Cow position:chr15:44641324-44640864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 153

               
               
               Conread position:5-457
               
               
               Cow position:chr15:26911654-26912108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 108

               
               
               Conread position:5-458
               
               
               Cow position:chr15:1082960-1083409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:311
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):179, 41

               
               
               Conread position:5-459
               
               
               Cow position:chr15:4138557-4138095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 25

               
               
               Conread position:5-460
               
               
               Cow position:chr15:19119190-19119630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:317
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):109, 121

               
               
               Conread position:5-460
               
               
               Cow position:chr15:25208340-25208797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 54

               
               
               Conread position:5-460
               
               
               Cow position:chr15:43827349-43827810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 41

               
               
               Conread position:5-465
               
               
               Cow position:chr15:3699857-3700331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 72

               
               
               Conread position:5-465
               
               
               Cow position:chr15:26078943-26079395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:306
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):109, 161

               
               
               Conread position:5-465
               
               
               Cow position:chr15:37382049-37381580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:5-469
               
               
               Cow position:chr15:20534023-20534498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 84

               
               
               Conread position:5-470
               
               
               Cow position:chr15:4918633-4919115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:321
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):186, 9

               
               
               Conread position:5-471
               
               
               Cow position:chr15:1329679-1330154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 69

               
               
               Conread position:5-480
               
               
               Cow position:chr15:13554766-13554293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 43

               
               
               Conread position:5-488
               
               
               Cow position:chr15:30982341-30981871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 70

               
               
               Conread position:6-289
               
               
               Cow position:chr15:9062150-9062454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):63, 242

               
               
               Conread position:6-292
               
               
               Cow position:chr15:33376382-33376673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:6-301
               
               
               Cow position:chr15:37822884-37823184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):128, 240

               
               
               Conread position:6-364
               
               
               Cow position:chr15:5498603-5498969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:6-367
               
               
               Cow position:chr15:22751874-22751514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 58

               
               
               Conread position:6-373
               
               
               Cow position:chr15:9870989-9871361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 63

               
               
               Conread position:6-373
               
               
               Cow position:chr15:42415692-42415310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):67, 174

               
               
               Conread position:6-430
               
               
               Cow position:chr15:20390864-20391284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):185, 97

               
               
               Conread position:6-437
               
               
               Cow position:chr15:15881347-15880910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:304
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):122, 28

               
               
               Conread position:6-440
               
               
               Cow position:chr15:14871167-14870724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 26

               
               
               Conread position:6-444
               
               
               Cow position:chr15:17196571-17196125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 299

               
               
               Conread position:6-445
               
               
               Cow position:chr15:34206773-34207211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 30

               
               
               Conread position:6-454
               
               
               Cow position:chr15:28924343-28924788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 118

               
               
               Conread position:6-460
               
               
               Cow position:chr15:16616619-16616152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 51

               
               
               Conread position:6-460
               
               
               Cow position:chr15:19403401-19402964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 71

               
               
               Conread position:6-460
               
               
               Cow position:chr15:36392089-36391633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 87

               
               
               Conread position:6-466
               
               
               Cow position:chr15:794592-795067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 29

               
               
               Conread position:6-466
               
               
               Cow position:chr15:5234579-5235042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:6-466
               
               
               Cow position:chr15:45245125-45245591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:317
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):274, 7

               
               
               Conread position:6-474
               
               
               Cow position:chr15:20458874-20459361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 199

               
               
               Conread position:9-290
               
               
               Cow position:chr15:21832001-21832286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:9-406
               
               
               Cow position:chr15:4676583-4676983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 148

               
               
               Conread position:9-435
               
               
               Cow position:chr15:43030599-43031037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 132

               
               
               Conread position:9-446
               
               
               Cow position:chr15:24616986-24616546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:297
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):119, 87

               
               
               Conread position:9-460
               
               
               Cow position:chr15:20422341-20422820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 106

               
               
               Conread position:9-460
               
               
               Cow position:chr15:43626881-43626431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 62

               
               
               Conread position:10-416
               
               
               Cow position:chr15:49738625-49739029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 203

               
               
               Conread position:10-453
               
               
               Cow position:chr15:7430404-7429937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 73

               
               
               Conread position:12-373
               
               
               Cow position:chr15:52380710-52380344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:256
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):115, 101

               
               
               Conread position:13-290
               
               
               Cow position:chr15:9267644-9267911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):68, 101

               
               
               Conread position:13-445
               
               
               Cow position:chr15:33976274-33976719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 169

               
               
               Conread position:13-448
               
               
               Cow position:chr15:21388752-21389192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 46

               
               
               Conread position:13-466
               
               
               Cow position:chr15:16604238-16603779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 75

               
               
               Conread position:13-469
               
               
               Cow position:chr15:22532657-22532200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 32

               
               
               Conread position:14-457
               
               
               Cow position:chr15:26752598-26753017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 105

               
               
               Conread position:14-460
               
               
               Cow position:chr15:4485562-4485116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 301

               
               
               Conread position:14-460
               
               
               Cow position:chr15:24797383-24797845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:316
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):72, 112

               
               
               Conread position:15-397
               
               
               Cow position:chr15:27281279-27280895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 85

               
               
               Conread position:17-487
               
               
               Cow position:chr15:29272610-29272131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:309
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):33, 227

               
               
               Conread position:20-437
               
               
               Cow position:chr15:52482417-52482843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 94

               
               
               Conread position:20-437
               
               
               Cow position:chr15:53164431-53164006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 93

               
               
               Conread position:21-414
               
               
               Cow position:chr15:13515780-13515373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 103

               
               
               Conread position:24-353
               
               
               Cow position:chr15:53680363-53680684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):104, 15

               
               
               Conread position:24-446
               
               
               Cow position:chr15:27247916-27247482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:283
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:24-473
               
               
               Cow position:chr15:20486805-20487255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 162

               
               
               Conread position:25-456
               
               
               Cow position:chr15:17084616-17084174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:302
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):103, 35

               
               
               Conread position:26-373
               
               
               Cow position:chr15:30820417-30820781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):48, 311

               
               
               Conread position:26-445
               
               
               Cow position:chr15:41418405-41418853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:27-290
               
               
               Cow position:chr15:48403742-48404004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):90, 160

               
               
               Conread position:27-459
               
               
               Cow position:chr15:19186213-19186651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 36

               
               
               Conread position:27-470
               
               
               Cow position:chr15:22938931-22939374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 49

               
               
               Conread position:32-290
               
               
               Cow position:chr15:5571236-5571497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:32-368
               
               
               Cow position:chr15:52739725-52740065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):194, 5

               
               
               Conread position:32-390
               
               
               Cow position:chr15:8962397-8962041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:256
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):96, 36

               
               
               Conread position:37-407
               
               
               Cow position:chr15:25584694-25585076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 201

               
               
               Conread position:39-460
               
               
               Cow position:chr15:42788770-42789189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):171, 75

               
               
               Conread position:46-477
               
               
               Cow position:chr15:286866-286422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:290
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):126, 51

               
               
               Conread position:48-373
               
               
               Cow position:chr15:24129031-24128717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):80, 30

               
               
               Conread position:50-427
               
               
               Cow position:chr15:18018294-18017923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):26, 55

               
               
               Conread position:50-446
               
               
               Cow position:chr15:33625332-33624932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):18, 27

               
               
               Conread position:51-449
               
               
               Cow position:chr15:26404650-26404257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):76, 119

               
               
               Conread position:54-452
               
               
               Cow position:chr15:16307794-16307390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 185

               
               
               Conread position:63-336
               
               
               Cow position:chr15:11362809-11363083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):20, 123

               
               
               Conread position:63-356
               
               
               Cow position:chr15:20725248-20725543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):128, 32

               
               
               Conread position:66-465
               
               
               Cow position:chr15:36259225-36259647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:278
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):61, 101

               
               
               Conread position:69-460
               
               
               Cow position:chr15:43913721-43914136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:77-345
               
               
               Cow position:chr15:33679049-33678783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:77-429
               
               
               Cow position:chr15:4535262-4534903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 115

               
               
               Conread position:77-444
               
               
               Cow position:chr15:24994173-24994536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):51, 23

               
               
               Conread position:77-452
               
               
               Cow position:chr15:14020826-14020453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:265
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):51, 74

               
               
               Conread position:77-456
               
               
               Cow position:chr15:16823291-16822904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):50, 36

               
               
               Conread position:77-456
               
               
               Cow position:chr15:17100361-17100747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 37

               
               
               Conread position:77-456
               
               
               Cow position:chr15:39599795-39599411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 121

               
               
               Conread position:77-459
               
               
               Cow position:chr15:38883512-38883111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:78-279
               
               
               Cow position:chr15:241202-240994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:78-343
               
               
               Cow position:chr15:40343604-40343330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):50, 131

               
               
               Conread position:78-368
               
               
               Cow position:chr15:18206157-18206451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):36, 286

               
               
               Conread position:78-373
               
               
               Cow position:chr15:36781982-36782269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):50, 25

               
               
               Conread position:78-403
               
               
               Cow position:chr15:41619832-41620172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:78-437
               
               
               Cow position:chr15:45217176-45216823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):20, 140

               
               
               Conread position:78-445
               
               
               Cow position:chr15:12785790-12785406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:263
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):50, 240

               
               
               Conread position:78-456
               
               
               Cow position:chr15:16927730-16928131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:280
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):49, 36

               
               
               Conread position:78-466
               
               
               Cow position:chr15:1298090-1297694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 37

               
               
               Conread position:79-459
               
               
               Cow position:chr15:21941496-21941881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):90, 21

               
               
               Conread position:80-460
               
               
               Cow position:chr15:50302538-50302145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):48, 149

               
               
               Conread position:80-466
               
               
               Cow position:chr15:21894134-21893730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 155

               
               
               Conread position:81-460
               
               
               Cow position:chr15:50341459-50341082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:264
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):208, 33

               
               
               Conread position:81-466
               
               
               Cow position:chr15:34140331-34139936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:275
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:82-359
               
               
               Cow position:chr15:40009300-40009584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):45, 145

               
               
               Conread position:82-456
               
               
               Cow position:chr15:11011259-11011640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:250
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):46, 100

               
               
               Conread position:82-457
               
               
               Cow position:chr15:19771477-19771098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):17, 61

               
               
               Conread position:83-289
               
               
               Cow position:chr15:11658216-11658426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):45, 147

               
               
               Conread position:83-398
               
               
               Cow position:chr15:11692687-11693015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 315

               
               
               Conread position:83-457
               
               
               Cow position:chr15:35642369-35641979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 238

               
               
               Conread position:83-460
               
               
               Cow position:chr15:29604366-29604739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:269
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):7, 85

               
               
               Conread position:84-460
               
               
               Cow position:chr15:5683482-5683111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:262
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):44, 98

               
               
               Conread position:85-444
               
               
               Cow position:chr15:22137030-22136667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 191

               
               
               Conread position:85-452
               
               
               Cow position:chr15:27972868-27973250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 241

               
               
               Conread position:85-463
               
               
               Cow position:chr15:12723425-12723045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 39

               
               
               Conread position:86-459
               
               
               Cow position:chr15:21803311-21803695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 125

               
               
               Conread position:88-290
               
               
               Cow position:chr15:6586369-6586574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):39, 140

               
               
               Conread position:88-476
               
               
               Cow position:chr15:2144788-2145196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:275
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):37, 17

               
               
               Conread position:89-427
               
               
               Cow position:chr15:35417279-35417631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):38, 26

               
               
               Conread position:89-466
               
               
               Cow position:chr15:22532004-22531623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 150

               
               
               Conread position:92-437
               
               
               Cow position:chr15:29810449-29810108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):35, 114

               
               
               Conread position:93-446
               
               
               Cow position:chr15:10245670-10246019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:94-460
               
               
               Cow position:chr15:22938439-22938801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 98

               
               
               Conread position:96-339
               
               
               Cow position:chr15:21523126-21522876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:96-439
               
               
               Cow position:chr15:47822135-47821798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):196, 19

               
               
               Conread position:97-445
               
               
               Cow position:chr15:31857927-31857567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:251
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):31, 133

               
               
               Conread position:98-459
               
               
               Cow position:chr15:26158284-26158634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):30, 9

               
               
               Conread position:99-416
               
               
               Cow position:chr15:21421274-21420943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:100-368
               
               
               Cow position:chr15:5633004-5632747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):28, 80

               
               
               Conread position:105-285
               
               
               Cow position:chr15:12304968-12304788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):28, 121

               
               
               Conread position:105-434
               
               
               Cow position:chr15:38394747-38394416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):23, 220

               
               
               Conread position:105-466
               
               
               Cow position:chr15:49922466-49922090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:263
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):23, 12

               
               
               Conread position:107-453
               
               
               Cow position:chr15:50322920-50322563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 119

               
               
               Conread position:108-459
               
               
               Cow position:chr15:17763224-17762869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):20, 56

               
               
               Conread position:110-465
               
               
               Cow position:chr15:39598560-39598196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):18, 57

               
               
               Conread position:112-361
               
               
               Cow position:chr15:10846042-10845787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:118-458
               
               
               Cow position:chr15:10088628-10088282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):9, 52

               
               
               Conread position:118-459
               
               
               Cow position:chr15:11995711-11996063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):10, 324

               
               
               Conread position:126-466
               
               
               Cow position:chr15:47843802-47844140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):42, 103

               
               
               Conread position:128-468
               
               
               Cow position:chr15:26918970-26919320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 100

               
               
               Conread position:129-457
               
               
               Cow position:chr15:50351119-50350812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):102, 42

               
               
               Conread position:130-445
               
               
               Cow position:chr15:44658661-44658339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):61, 39

               
               
               Conread position:130-456
               
               
               Cow position:chr15:1722550-1722885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):59, 15

               
               
               Conread position:130-460
               
               
               Cow position:chr15:17353349-17353686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):138, 61

               
               
               Conread position:130-460
               
               
               Cow position:chr15:26573688-26573339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):74, 314

               
               
               Conread position:130-466
               
               
               Cow position:chr15:225502-225853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):35, 62

               
               
               Conread position:132-460
               
               
               Cow position:chr15:5071801-5072123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):237, 121

               
               
               Conread position:133-373
               
               
               Cow position:chr15:8007280-8007036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:134-445
               
               
               Cow position:chr15:1804031-1804362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):57, 208

               
               
               Conread position:141-445
               
               
               Cow position:chr15:21821630-21821948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):32, 129

               
               
               Conread position:142-358
               
               
               Cow position:chr15:34144866-34145083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:143-460
               
               
               Cow position:chr15:16667211-16667536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 87

               
               
               Conread position:143-466
               
               
               Cow position:chr15:36773406-36773738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):48, 178

               
               
               Conread position:146-445
               
               
               Cow position:chr15:45585010-45584709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):45, 103

               
               
               Conread position:153-445
               
               
               Cow position:chr15:32323927-32324229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:214
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:155-460
               
               
               Cow position:chr15:2141025-2141342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):58, 10

               
               
               Conread position:159-367
               
               
               Cow position:chr15:12441553-12441763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):133, 105

               
               
               Conread position:164-370
               
               
               Cow position:chr15:16657759-16657549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):77, 10

               
               
               Conread position:164-402
               
               
               Cow position:chr15:17858971-17859207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):154, 61

               
               
               Conread position:165-460
               
               
               Cow position:chr15:22871876-22871575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):26, 152

               
               
               Conread position:166-460
               
               
               Cow position:chr15:23275799-23275503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):124, 59

               
               
               Conread position:169-469
               
               
               Cow position:chr15:23572417-23572734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):45, 40

               
               
               Conread position:170-446
               
               
               Cow position:chr15:38838011-38837724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:177-458
               
               
               Cow position:chr15:12655658-12655954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 51

               
               
               Conread position:181-460
               
               
               Cow position:chr15:18671204-18671493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):111, 19

               
               
               Conread position:181-460
               
               
               Cow position:chr15:39316585-39316881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):48, 95

               
               
               Conread position:183-460
               
               
               Cow position:chr15:10737497-10737781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):8, 97

               
               
               Conread position:184-460
               
               
               Cow position:chr15:10608057-10608344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):11, 41

               
               
               Conread position:186-459
               
               
               Cow position:chr15:8354288-8354002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):110, 39

               
               
               Conread position:186-460
               
               
               Cow position:chr15:5726569-5726286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):107, 126

               
               
               Conread position:186-465
               
               
               Cow position:chr15:43788488-43788216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):107, 46

               
               
               Conread position:187-459
               
               
               Cow position:chr15:4296008-4295726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):104, 37

               
               
               Conread position:188-444
               
               
               Cow position:chr15:37205287-37205025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):100, 37

               
               
               Conread position:188-459
               
               
               Cow position:chr15:25386685-25386401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):45, 109

               
               
               Conread position:191-466
               
               
               Cow position:chr15:4178697-4178989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):7, 12

               
               
               Conread position:194-453
               
               
               Cow position:chr15:12870627-12870896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):96, 114

               
               
               Conread position:197-442
               
               
               Cow position:chr15:43599418-43599168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:197-460
               
               
               Cow position:chr15:915612-915882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):170, 57

               
               
               Conread position:202-466
               
               
               Cow position:chr15:10231513-10231793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):86, 254

               
               
               Conread position:208-460
               
               
               Cow position:chr15:662246-662505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:212-460
               
               
               Cow position:chr15:4418182-4418440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 103

               
               
               Conread position:212-461
               
               
               Cow position:chr15:30470751-30471012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:212-466
               
               
               Cow position:chr15:9107255-9106991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):80, 216

               
               
               Conread position:213-467
               
               
               Cow position:chr15:9781684-9781422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):18, 99

               
               
               Conread position:216-466
               
               
               Cow position:chr15:49274166-49273912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):76, 9

               
               
               Conread position:216-470
               
               
               Cow position:chr15:29331218-29330957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):77, 9

               
               
               Conread position:218-443
               
               
               Cow position:chr15:39326299-39326539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 130

               
               
               Conread position:219-440
               
               
               Cow position:chr15:35425600-35425828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:220-466
               
               
               Cow position:chr15:5717921-5717669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):72, 29

               
               
               Conread position:225-453
               
               
               Cow position:chr15:5158581-5158342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:225-460
               
               
               Cow position:chr15:31560196-31560428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):87, 52

               
               
               Conread position:229-460
               
               
               Cow position:chr15:23779869-23780106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):67, 87

               
               
               Conread position:238-459
               
               
               Cow position:chr15:34284218-34284449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):54, 42

               
               
               Conread position:241-457
               
               
               Cow position:chr15:35440885-35441114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:241-460
               
               
               Cow position:chr15:31928708-31928935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):52, 75

               
               
               Conread position:244-442
               
               
               Cow position:chr15:10660364-10660576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:251-453
               
               
               Cow position:chr15:39286232-39286440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):39, 63

               
               
               Conread position:251-460
               
               
               Cow position:chr15:44280278-44280061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):42, 17

               
               
               Conread position:258-460
               
               
               Cow position:chr15:5044309-5044516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:261-466
               
               
               Cow position:chr15:41527806-41528021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):31, 56

               
               
               Conread position:266-459
               
               
               Cow position:chr15:14176334-14176537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):26, 51

               
               
               Conread position:269-453
               
               
               Cow position:chr15:9497337-9497534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):23, 52

               
               
               Conread position:272-460
               
               
               Cow position:chr15:32977685-32977886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:296-470
               
               
               Cow position:chr15:41583013-41582835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):74, 145

               
               
               Conread position:314-457
               
               
               Cow position:chr15:14261144-14261293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:320-458
               
               
               Cow position:chr15:48590136-48590279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:2-461
               
               
               Cow position:chr16:45609646-45610115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 7

               
               
               Conread position:2-466
               
               
               Cow position:chr16:11775388-11774908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 22

               
               
               Conread position:3-466
               
               
               Cow position:chr16:15370344-15370823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 34

               
               
               Conread position:4-358
               
               
               Cow position:chr16:29066829-29067180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 250

               
               
               Conread position:5-230
               
               
               Cow position:chr16:8706888-8706662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 45

               
               
               Conread position:5-231
               
               
               Cow position:chr16:9948448-9948684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:5-289
               
               
               Cow position:chr16:23990824-23990536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 61

               
               
               Conread position:5-306
               
               
               Cow position:chr16:43804161-43804458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 70

               
               
               Conread position:5-307
               
               
               Cow position:chr16:34141309-34141611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):129, 147

               
               
               Conread position:5-322
               
               
               Cow position:chr16:49141896-49141583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 169

               
               
               Conread position:5-350
               
               
               Cow position:chr16:31159908-31159561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:251
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):186, 32

               
               
               Conread position:5-354
               
               
               Cow position:chr16:4144722-4145081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 115

               
               
               Conread position:5-358
               
               
               Cow position:chr16:8807428-8807074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 167

               
               
               Conread position:5-366
               
               
               Cow position:chr16:30143552-30143179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 110

               
               
               Conread position:5-368
               
               
               Cow position:chr16:6692947-6692572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:253
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):52, 70

               
               
               Conread position:5-373
               
               
               Cow position:chr16:24228688-24228318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 277

               
               
               Conread position:5-373
               
               
               Cow position:chr16:42218031-42217656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):73, 305

               
               
               Conread position:5-374
               
               
               Cow position:chr16:4981706-4981342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):94, 56

               
               
               Conread position:5-387
               
               
               Cow position:chr16:7541953-7542332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 109

               
               
               Conread position:5-390
               
               
               Cow position:chr16:11568447-11568064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):78, 25

               
               
               Conread position:5-440
               
               
               Cow position:chr16:56231485-56231936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 225

               
               
               Conread position:5-443
               
               
               Cow position:chr16:23737847-23738294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:304
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):83, 30

               
               
               Conread position:5-445
               
               
               Cow position:chr16:13698170-13698629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 40

               
               
               Conread position:5-445
               
               
               Cow position:chr16:32132196-32132621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:5-445
               
               
               Cow position:chr16:37670080-37669623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:305
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):65, 156

               
               
               Conread position:5-445
               
               
               Cow position:chr16:55682955-55683412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 340

               
               
               Conread position:5-446
               
               
               Cow position:chr16:4626732-4626276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 102

               
               
               Conread position:5-446
               
               
               Cow position:chr16:34998942-34998511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 176

               
               
               Conread position:5-448
               
               
               Cow position:chr16:16402666-16402217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 30

               
               
               Conread position:5-452
               
               
               Cow position:chr16:8026179-8025734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 81

               
               
               Conread position:5-452
               
               
               Cow position:chr16:9497611-9497144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 167

               
               
               Conread position:5-452
               
               
               Cow position:chr16:23823349-23822908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:309
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):127, 47

               
               
               Conread position:5-452
               
               
               Cow position:chr16:52835211-52834767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:313
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:5-456
               
               
               Cow position:chr16:3633778-3634241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:308
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):87, 63

               
               
               Conread position:5-457
               
               
               Cow position:chr16:2223742-2223271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 48

               
               
               Conread position:5-457
               
               
               Cow position:chr16:18354281-18353832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 15

               
               
               Conread position:5-457
               
               
               Cow position:chr16:35187916-35188375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 111

               
               
               Conread position:5-458
               
               
               Cow position:chr16:6379447-6378996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 64

               
               
               Conread position:5-458
               
               
               Cow position:chr16:16548270-16548738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 32

               
               
               Conread position:5-458
               
               
               Cow position:chr16:40561888-40562360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 235

               
               
               Conread position:5-458
               
               
               Cow position:chr16:41752920-41752458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:307
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):65, 231

               
               
               Conread position:5-458
               
               
               Cow position:chr16:53509326-53508857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-459
               
               
               Cow position:chr16:13307203-13306742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 64

               
               
               Conread position:5-459
               
               
               Cow position:chr16:25170055-25170522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 61

               
               
               Conread position:5-459
               
               
               Cow position:chr16:33226869-33226409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 30

               
               
               Conread position:5-459
               
               
               Cow position:chr16:38709157-38708709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 66

               
               
               Conread position:5-459
               
               
               Cow position:chr16:45139330-45139793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 110

               
               
               Conread position:5-459
               
               
               Cow position:chr16:46552469-46552923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 120

               
               
               Conread position:5-460
               
               
               Cow position:chr16:5726592-5727061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 73

               
               
               Conread position:5-460
               
               
               Cow position:chr16:7498731-7499179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-460
               
               
               Cow position:chr16:7702196-7702648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 60

               
               
               Conread position:5-460
               
               
               Cow position:chr16:16265435-16264977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 81

               
               
               Conread position:5-460
               
               
               Cow position:chr16:18141664-18141198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 62

               
               
               Conread position:5-460
               
               
               Cow position:chr16:19643557-19644019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 142

               
               
               Conread position:5-460
               
               
               Cow position:chr16:22842407-22841928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:330
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):72, 202

               
               
               Conread position:5-460
               
               
               Cow position:chr16:33704468-33704935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:323
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):37, 71

               
               
               Conread position:5-460
               
               
               Cow position:chr16:42079176-42078716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 25

               
               
               Conread position:5-460
               
               
               Cow position:chr16:43275684-43276148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 221

               
               
               Conread position:5-460
               
               
               Cow position:chr16:51598940-51598482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-465
               
               
               Cow position:chr16:29158794-29159256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 108

               
               
               Conread position:5-465
               
               
               Cow position:chr16:39474476-39474017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 156

               
               
               Conread position:5-466
               
               
               Cow position:chr16:14754670-14754188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 30

               
               
               Conread position:5-466
               
               
               Cow position:chr16:51500595-51501068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 45

               
               
               Conread position:5-466
               
               
               Cow position:chr16:52169741-52170193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):375, 55

               
               
               Conread position:5-466
               
               
               Cow position:chr16:54578834-54579305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 65

               
               
               Conread position:5-469
               
               
               Cow position:chr16:7665289-7665775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 113

               
               
               Conread position:5-469
               
               
               Cow position:chr16:18758177-18757699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:5-473
               
               
               Cow position:chr16:13195666-13195198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 73

               
               
               Conread position:6-313
               
               
               Cow position:chr16:32118772-32119083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):118, 241

               
               
               Conread position:6-337
               
               
               Cow position:chr16:40044766-40044427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):128, 199

               
               
               Conread position:6-355
               
               
               Cow position:chr16:44973152-44973510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 16

               
               
               Conread position:6-357
               
               
               Cow position:chr16:56149976-56150314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 137

               
               
               Conread position:6-370
               
               
               Cow position:chr16:4712564-4712931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 192

               
               
               Conread position:6-416
               
               
               Cow position:chr16:9932818-9933241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 177

               
               
               Conread position:6-420
               
               
               Cow position:chr16:35757880-35758291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:289
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):122, 55

               
               
               Conread position:6-430
               
               
               Cow position:chr16:55586940-55586512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 201

               
               
               Conread position:6-435
               
               
               Cow position:chr16:600607-601049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 292

               
               
               Conread position:6-435
               
               
               Cow position:chr16:32586865-32587308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:292
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):126, 40

               
               
               Conread position:6-445
               
               
               Cow position:chr16:38664045-38663597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 62

               
               
               Conread position:6-450
               
               
               Cow position:chr16:31558555-31559020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 159

               
               
               Conread position:6-450
               
               
               Cow position:chr16:42339868-42340315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 30

               
               
               Conread position:6-460
               
               
               Cow position:chr16:24825730-24826202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 225

               
               
               Conread position:6-460
               
               
               Cow position:chr16:48087207-48086741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:6-460
               
               
               Cow position:chr16:53813994-53813526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 70

               
               
               Conread position:6-460
               
               
               Cow position:chr16:56875986-56875535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 45

               
               
               Conread position:6-465
               
               
               Cow position:chr16:26677014-26676550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 94

               
               
               Conread position:6-466
               
               
               Cow position:chr16:51113211-51112741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 47

               
               
               Conread position:6-469
               
               
               Cow position:chr16:28922452-28922911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 107

               
               
               Conread position:7-460
               
               
               Cow position:chr16:4857429-4856973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 30

               
               
               Conread position:7-466
               
               
               Cow position:chr16:23472407-23472882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 183

               
               
               Conread position:9-339
               
               
               Cow position:chr16:9790959-9790631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):125, 12

               
               
               Conread position:9-353
               
               
               Cow position:chr16:51400080-51399737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 34

               
               
               Conread position:9-358
               
               
               Cow position:chr16:26500830-26501177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 59

               
               
               Conread position:9-369
               
               
               Cow position:chr16:56913047-56912683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:255
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):119, 48

               
               
               Conread position:9-460
               
               
               Cow position:chr16:33645686-33646147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 32

               
               
               Conread position:10-453
               
               
               Cow position:chr16:11103170-11102699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:311
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:10-457
               
               
               Cow position:chr16:5416085-5415635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 73

               
               
               Conread position:10-469
               
               
               Cow position:chr16:17142603-17143073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 91

               
               
               Conread position:11-445
               
               
               Cow position:chr16:15808640-15809092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:289
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):30, 82

               
               
               Conread position:13-357
               
               
               Cow position:chr16:53554042-53553701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 55

               
               
               Conread position:13-445
               
               
               Cow position:chr16:49169709-49169267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 58

               
               
               Conread position:13-453
               
               
               Cow position:chr16:4910858-4910403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 60

               
               
               Conread position:14-306
               
               
               Cow position:chr16:30939408-30939701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 54

               
               
               Conread position:14-311
               
               
               Cow position:chr16:53225132-53224846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):114, 23

               
               
               Conread position:14-435
               
               
               Cow position:chr16:21450525-21450951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 53

               
               
               Conread position:14-466
               
               
               Cow position:chr16:52855345-52854884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):355, 89

               
               
               Conread position:20-445
               
               
               Cow position:chr16:5845346-5845783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:298
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):58, 37

               
               
               Conread position:21-446
               
               
               Cow position:chr16:4399402-4399850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 47

               
               
               Conread position:24-457
               
               
               Cow position:chr16:13611772-13611327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 99

               
               
               Conread position:24-490
               
               
               Cow position:chr16:11105232-11105717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:320
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):32, 96

               
               
               Conread position:25-476
               
               
               Cow position:chr16:37062710-37062252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:291
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):265, 92

               
               
               Conread position:29-466
               
               
               Cow position:chr16:42242432-42241983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 291

               
               
               Conread position:30-358
               
               
               Cow position:chr16:42253882-42253539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):104, 6

               
               
               Conread position:30-466
               
               
               Cow position:chr16:819942-820391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 29

               
               
               Conread position:32-382
               
               
               Cow position:chr16:39279389-39279027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:254
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):96, 259

               
               
               Conread position:32-383
               
               
               Cow position:chr16:37379959-37380314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):67, 36

               
               
               Conread position:32-458
               
               
               Cow position:chr16:42734303-42733884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:302
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):80, 40

               
               
               Conread position:34-409
               
               
               Cow position:chr16:14360798-14361181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):196, 90

               
               
               Conread position:36-449
               
               
               Cow position:chr16:8438934-8438534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:283
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):78, 142

               
               
               Conread position:39-458
               
               
               Cow position:chr16:9973806-9973372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 191

               
               
               Conread position:39-478
               
               
               Cow position:chr16:53627724-53627280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 28

               
               
               Conread position:41-249
               
               
               Cow position:chr16:33443283-33443075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):93, 72

               
               
               Conread position:45-491
               
               
               Cow position:chr16:4699262-4698832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 33

               
               
               Conread position:46-420
               
               
               Cow position:chr16:38903730-38903369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):82, 11

               
               
               Conread position:49-420
               
               
               Cow position:chr16:23482994-23483371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 169

               
               
               Conread position:54-448
               
               
               Cow position:chr16:43506089-43505694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 174

               
               
               Conread position:54-451
               
               
               Cow position:chr16:51869349-51869759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:55-437
               
               
               Cow position:chr16:29379966-29380355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 238

               
               
               Conread position:57-460
               
               
               Cow position:chr16:7456752-7456338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:283
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):62, 362

               
               
               Conread position:58-464
               
               
               Cow position:chr16:13689378-13689801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 168

               
               
               Conread position:62-282
               
               
               Cow position:chr16:34168314-34168537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:62-306
               
               
               Cow position:chr16:33751916-33752163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):14, 152

               
               
               Conread position:62-458
               
               
               Cow position:chr16:22804862-22804471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 51

               
               
               Conread position:62-460
               
               
               Cow position:chr16:14106365-14106766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):48, 111

               
               
               Conread position:62-460
               
               
               Cow position:chr16:47820290-47820696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:267
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):66, 167

               
               
               Conread position:64-405
               
               
               Cow position:chr16:35937057-35937411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 164

               
               
               Conread position:66-357
               
               
               Cow position:chr16:39417384-39417102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):226, 20

               
               
               Conread position:66-444
               
               
               Cow position:chr16:3246469-3246092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:267
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):62, 49

               
               
               Conread position:66-446
               
               
               Cow position:chr16:13969654-13969252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:282
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):61, 29

               
               
               Conread position:69-290
               
               
               Cow position:chr16:25287964-25287740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):59, 44

               
               
               Conread position:70-342
               
               
               Cow position:chr16:56846171-56845901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):44, 183

               
               
               Conread position:70-457
               
               
               Cow position:chr16:20476259-20476661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:276
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):29, 145

               
               
               Conread position:74-368
               
               
               Cow position:chr16:11619485-11619778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):54, 106

               
               
               Conread position:75-285
               
               
               Cow position:chr16:902155-901940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:77-230
               
               
               Cow position:chr16:33406023-33405871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):51, 139

               
               
               Conread position:77-343
               
               
               Cow position:chr16:53613033-53613314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:77-439
               
               
               Cow position:chr16:5636323-5636692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):31, 106

               
               
               Conread position:77-445
               
               
               Cow position:chr16:53086590-53086227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 38

               
               
               Conread position:77-448
               
               
               Cow position:chr16:571183-570804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:261
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):11, 37

               
               
               Conread position:77-460
               
               
               Cow position:chr16:20634136-20633746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 38

               
               
               Conread position:77-465
               
               
               Cow position:chr16:48145665-48145267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):50, 105

               
               
               Conread position:77-466
               
               
               Cow position:chr16:48006756-48006354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:78-290
               
               
               Cow position:chr16:47662448-47662661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):50, 120

               
               
               Conread position:78-373
               
               
               Cow position:chr16:4372761-4372459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):24, 36

               
               
               Conread position:78-398
               
               
               Cow position:chr16:24672624-24672291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:78-431
               
               
               Cow position:chr16:52889675-52889312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 163

               
               
               Conread position:78-437
               
               
               Cow position:chr16:8315438-8315088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):214, 8

               
               
               Conread position:78-445
               
               
               Cow position:chr16:2750730-2751086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:78-449
               
               
               Cow position:chr16:18402431-18402804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:257
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):36, 93

               
               
               Conread position:78-456
               
               
               Cow position:chr16:14758474-14758864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):103, 39

               
               
               Conread position:78-457
               
               
               Cow position:chr16:17745569-17745962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 146

               
               
               Conread position:78-458
               
               
               Cow position:chr16:25484103-25484456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:258
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:78-463
               
               
               Cow position:chr16:19670596-19670221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):54, 29

               
               
               Conread position:78-482
               
               
               Cow position:chr16:5256738-5257148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):113, 50

               
               
               Conread position:79-343
               
               
               Cow position:chr16:30209499-30209754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):49, 36

               
               
               Conread position:79-466
               
               
               Cow position:chr16:3614484-3614878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 119

               
               
               Conread position:79-467
               
               
               Cow position:chr16:43308825-43308425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 36

               
               
               Conread position:81-467
               
               
               Cow position:chr16:45813954-45813563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:265
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):150, 18

               
               
               Conread position:82-367
               
               
               Cow position:chr16:23058697-23058408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 173

               
               
               Conread position:82-453
               
               
               Cow position:chr16:48385662-48385280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:83-459
               
               
               Cow position:chr16:16597302-16597684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:256
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):44, 145

               
               
               Conread position:83-466
               
               
               Cow position:chr16:54665071-54664664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:84-356
               
               
               Cow position:chr16:22868436-22868161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):15, 32

               
               
               Conread position:84-460
               
               
               Cow position:chr16:20025185-20025571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 82

               
               
               Conread position:84-460
               
               
               Cow position:chr16:35623509-35623120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 167

               
               
               Conread position:86-467
               
               
               Cow position:chr16:7429121-7429517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 65

               
               
               Conread position:87-453
               
               
               Cow position:chr16:8933675-8933306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 26

               
               
               Conread position:87-460
               
               
               Cow position:chr16:22850073-22850454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):41, 18

               
               
               Conread position:87-466
               
               
               Cow position:chr16:26649889-26649492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):40, 26

               
               
               Conread position:88-437
               
               
               Cow position:chr16:11615483-11615139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):40, 92

               
               
               Conread position:88-459
               
               
               Cow position:chr16:19408768-19408400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:88-471
               
               
               Cow position:chr16:238006-238407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:274
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):40, 143

               
               
               Conread position:89-452
               
               
               Cow position:chr16:26373205-26372831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 103

               
               
               Conread position:89-459
               
               
               Cow position:chr16:9985636-9985265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):102, 24

               
               
               Conread position:89-460
               
               
               Cow position:chr16:5363638-5364032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):39, 141

               
               
               Conread position:91-466
               
               
               Cow position:chr16:37452868-37452477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 51

               
               
               Conread position:92-448
               
               
               Cow position:chr16:48492935-48493297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):204, 25

               
               
               Conread position:92-452
               
               
               Cow position:chr16:38905477-38905114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:253
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 100

               
               
               Conread position:92-464
               
               
               Cow position:chr16:42633999-42633611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:92-466
               
               
               Cow position:chr16:11008093-11008473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:263
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):27, 11

               
               
               Conread position:93-459
               
               
               Cow position:chr16:14568734-14568362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 20

               
               
               Conread position:94-352
               
               
               Cow position:chr16:47620131-47620392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):34, 133

               
               
               Conread position:95-445
               
               
               Cow position:chr16:29557879-29557511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 143

               
               
               Conread position:96-460
               
               
               Cow position:chr16:50282678-50282303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):37, 205

               
               
               Conread position:97-424
               
               
               Cow position:chr16:32327406-32327751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:245
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):30, 130

               
               
               Conread position:100-306
               
               
               Cow position:chr16:23810679-23810879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 64

               
               
               Conread position:101-452
               
               
               Cow position:chr16:30096372-30096013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 216

               
               
               Conread position:103-373
               
               
               Cow position:chr16:53048311-53048586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):25, 127

               
               
               Conread position:103-442
               
               
               Cow position:chr16:10148041-10148393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):25, 75

               
               
               Conread position:103-454
               
               
               Cow position:chr16:7152414-7152049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:252
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):15, 304

               
               
               Conread position:104-292
               
               
               Cow position:chr16:45046389-45046571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 147

               
               
               Conread position:104-460
               
               
               Cow position:chr16:56082599-56082236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 115

               
               
               Conread position:105-451
               
               
               Cow position:chr16:51246725-51247054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):23, 53

               
               
               Conread position:107-373
               
               
               Cow position:chr16:45534947-45535212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):20, 59

               
               
               Conread position:107-453
               
               
               Cow position:chr16:8812323-8811972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):21, 33

               
               
               Conread position:107-460
               
               
               Cow position:chr16:29037680-29038043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):125, 17

               
               
               Conread position:108-458
               
               
               Cow position:chr16:30037229-30036863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 129

               
               
               Conread position:108-460
               
               
               Cow position:chr16:25839382-25839749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):20, 43

               
               
               Conread position:109-445
               
               
               Cow position:chr16:5896185-5896532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):24, 130

               
               
               Conread position:110-445
               
               
               Cow position:chr16:21904930-21905260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):79, 119

               
               
               Conread position:111-368
               
               
               Cow position:chr16:26342045-26342295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):17, 61

               
               
               Conread position:112-369
               
               
               Cow position:chr16:30705875-30706137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):9, 178

               
               
               Conread position:115-460
               
               
               Cow position:chr16:31117846-31117486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):92, 11

               
               
               Conread position:117-459
               
               
               Cow position:chr16:12361198-12360844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:254
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):10, 72

               
               
               Conread position:118-453
               
               
               Cow position:chr16:50288932-50289274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:236
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):10, 63

               
               
               Conread position:118-478
               
               
               Cow position:chr16:27249184-27249540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 156

               
               
               Conread position:120-466
               
               
               Cow position:chr16:41530515-41530167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:246
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):9, 176

               
               
               Conread position:125-407
               
               
               Cow position:chr16:594446-594148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:129-450
               
               
               Cow position:chr16:53830802-53830473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):65, 100

               
               
               Conread position:129-461
               
               
               Cow position:chr16:48191214-48190881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):162, 95

               
               
               Conread position:130-293
               
               
               Cow position:chr16:28396307-28396146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):107, 6

               
               
               Conread position:130-361
               
               
               Cow position:chr16:28692922-28692701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):159, 25

               
               
               Conread position:130-372
               
               
               Cow position:chr16:29399782-29400020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 166

               
               
               Conread position:130-373
               
               
               Cow position:chr16:22860971-22860735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:130-374
               
               
               Cow position:chr16:13233157-13232914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):162, 61

               
               
               Conread position:130-443
               
               
               Cow position:chr16:27262157-27261838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):179, 41

               
               
               Conread position:130-453
               
               
               Cow position:chr16:8323198-8322860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:239
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):61, 99

               
               
               Conread position:130-453
               
               
               Cow position:chr16:51696883-51697207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):103, 56

               
               
               Conread position:130-456
               
               
               Cow position:chr16:42443941-42444282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):60, 8

               
               
               Conread position:130-457
               
               
               Cow position:chr16:8069030-8068698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):74, 46

               
               
               Conread position:130-460
               
               
               Cow position:chr16:43105725-43105388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 319

               
               
               Conread position:132-445
               
               
               Cow position:chr16:8066091-8065774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):168, 59

               
               
               Conread position:136-345
               
               
               Cow position:chr16:10462723-10462518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:136-459
               
               
               Cow position:chr16:11957790-11957449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:138-453
               
               
               Cow position:chr16:17982348-17982021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:142-374
               
               
               Cow position:chr16:39237743-39237981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):29, 87

               
               
               Conread position:142-466
               
               
               Cow position:chr16:52275330-52274995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):158, 83

               
               
               Conread position:143-452
               
               
               Cow position:chr16:14685588-14685269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):149, 82

               
               
               Conread position:143-489
               
               
               Cow position:chr16:17626731-17627089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:246
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):149, 165

               
               
               Conread position:144-437
               
               
               Cow position:chr16:41697289-41696986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):50, 69

               
               
               Conread position:148-446
               
               
               Cow position:chr16:6344633-6344327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 81

               
               
               Conread position:149-459
               
               
               Cow position:chr16:24855347-24855669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 87

               
               
               Conread position:151-408
               
               
               Cow position:chr16:54083843-54084113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:151-460
               
               
               Cow position:chr16:592007-591676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:155-457
               
               
               Cow position:chr16:17288754-17289072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):76, 312

               
               
               Conread position:158-448
               
               
               Cow position:chr16:8076692-8076383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:158-460
               
               
               Cow position:chr16:17282483-17282787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):134, 46

               
               
               Conread position:166-437
               
               
               Cow position:chr16:38119621-38119344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 86

               
               
               Conread position:166-458
               
               
               Cow position:chr16:31348943-31348639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):126, 59

               
               
               Conread position:170-460
               
               
               Cow position:chr16:7549796-7550097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):43, 39

               
               
               Conread position:171-459
               
               
               Cow position:chr16:22380526-22380226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):63, 147

               
               
               Conread position:171-460
               
               
               Cow position:chr16:7442273-7441974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):61, 244

               
               
               Conread position:172-425
               
               
               Cow position:chr16:50521308-50521570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):119, 53

               
               
               Conread position:177-448
               
               
               Cow position:chr16:14974697-14974427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):82, 48

               
               
               Conread position:177-452
               
               
               Cow position:chr16:23366077-23366361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):17, 35

               
               
               Conread position:177-470
               
               
               Cow position:chr16:25386816-25387110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):119, 57

               
               
               Conread position:179-460
               
               
               Cow position:chr16:10772971-10773249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):115, 12

               
               
               Conread position:181-426
               
               
               Cow position:chr16:9136015-9136263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):109, 180

               
               
               Conread position:183-465
               
               
               Cow position:chr16:29712261-29712555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):96, 152

               
               
               Conread position:184-457
               
               
               Cow position:chr16:47854785-47855064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):108, 93

               
               
               Conread position:186-452
               
               
               Cow position:chr16:12273912-12274191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):106, 212

               
               
               Conread position:186-460
               
               
               Cow position:chr16:38243818-38243534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:193-460
               
               
               Cow position:chr16:7583248-7583526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):99, 253

               
               
               Conread position:197-451
               
               
               Cow position:chr16:41689551-41689813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:200-390
               
               
               Cow position:chr16:14699777-14699977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:207-440
               
               
               Cow position:chr16:36121115-36120874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:212-477
               
               
               Cow position:chr16:30136024-30135759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):80, 148

               
               
               Conread position:213-452
               
               
               Cow position:chr16:56565467-56565717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):17, 96

               
               
               Conread position:213-460
               
               
               Cow position:chr16:23955955-23955703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 12

               
               
               Conread position:216-460
               
               
               Cow position:chr16:11082883-11083126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):154, 9

               
               
               Conread position:217-464
               
               
               Cow position:chr16:25380621-25380361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):12, 104

               
               
               Conread position:223-453
               
               
               Cow position:chr16:34754080-34753838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:224-460
               
               
               Cow position:chr16:12501280-12501032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):25, 17

               
               
               Conread position:225-459
               
               
               Cow position:chr16:56796783-56796538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:225-460
               
               
               Cow position:chr16:54734128-54734365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 90

               
               
               Conread position:225-465
               
               
               Cow position:chr16:22984641-22984889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):72, 16

               
               
               Conread position:237-444
               
               
               Cow position:chr16:30186538-30186755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):55, 182

               
               
               Conread position:237-450
               
               
               Cow position:chr16:7619283-7619066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):55, 201

               
               
               Conread position:238-450
               
               
               Cow position:chr16:13578966-13578742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:238-450
               
               
               Cow position:chr16:54226703-54226481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:238-458
               
               
               Cow position:chr16:21317700-21317466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):54, 39

               
               
               Conread position:238-459
               
               
               Cow position:chr16:43674770-43675002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:238-461
               
               
               Cow position:chr16:29677735-29677502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):77, 50

               
               
               Conread position:238-473
               
               
               Cow position:chr16:10945535-10945299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):134, 57

               
               
               Conread position:247-442
               
               
               Cow position:chr16:27160961-27160753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:251-460
               
               
               Cow position:chr16:33054575-33054352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:258-456
               
               
               Cow position:chr16:30359145-30358938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:258-456
               
               
               Cow position:chr16:50931601-50931399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):36, 62

               
               
               Conread position:269-468
               
               
               Cow position:chr16:8273911-8273699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:271-451
               
               
               Cow position:chr16:8768731-8768913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):26, 50

               
               
               Conread position:272-458
               
               
               Cow position:chr16:17135657-17135851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:296-461
               
               
               Cow position:chr16:15953866-15953687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:301-459
               
               
               Cow position:chr16:12077516-12077359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):49, 12

               
               
               Conread position:306-460
               
               
               Cow position:chr16:8206108-8205956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):9, 52

               
               
               Conread position:310-460
               
               
               Cow position:chr16:1415327-1415174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:316-466
               
               
               Cow position:chr16:51043634-51043787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:342-459
               
               
               Cow position:chr16:33357383-33357263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:363-460
               
               
               Cow position:chr16:12097673-12097772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:86
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):19, 7

               
               
               Conread position:370-460
               
               
               Cow position:chr16:12091625-12091532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:94
               
               
               Alignm identity:82
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:2-305
               
               
               Cow position:chr17:4606673-4606963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):288, 11

               
               
               Conread position:2-443
               
               
               Cow position:chr17:13143981-13143554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 7

               
               
               Conread position:2-453
               
               
               Cow position:chr17:923581-924035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 7

               
               
               Conread position:2-461
               
               
               Cow position:chr17:18592138-18592611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 230

               
               
               Conread position:3-464
               
               
               Cow position:chr17:20848237-20848694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 27

               
               
               Conread position:4-460
               
               
               Cow position:chr17:20993338-20992874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 169

               
               
               Conread position:5-233
               
               
               Cow position:chr17:22057470-22057241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:5-266
               
               
               Cow position:chr17:43527686-43527942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:5-290
               
               
               Cow position:chr17:1061355-1061071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 47

               
               
               Conread position:5-290
               
               
               Cow position:chr17:29276935-29277220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):122, 237

               
               
               Conread position:5-306
               
               
               Cow position:chr17:21874613-21874299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 160

               
               
               Conread position:5-356
               
               
               Cow position:chr17:12059390-12059035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 31

               
               
               Conread position:5-358
               
               
               Cow position:chr17:242342-242697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 41

               
               
               Conread position:5-359
               
               
               Cow position:chr17:1295868-1295511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 317

               
               
               Conread position:5-365
               
               
               Cow position:chr17:27305866-27306226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 71

               
               
               Conread position:5-377
               
               
               Cow position:chr17:24549873-24550255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 121

               
               
               Conread position:5-412
               
               
               Cow position:chr17:32651319-32651736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 307

               
               
               Conread position:5-426
               
               
               Cow position:chr17:5224106-5224534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 157

               
               
               Conread position:5-437
               
               
               Cow position:chr17:21959975-21959542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 32

               
               
               Conread position:5-437
               
               
               Cow position:chr17:24823968-24824388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:296
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-442
               
               
               Cow position:chr17:9565013-9565451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:5-442
               
               
               Cow position:chr17:30539546-30539119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 177

               
               
               Conread position:5-445
               
               
               Cow position:chr17:20800519-20800967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 170

               
               
               Conread position:5-445
               
               
               Cow position:chr17:21293342-21292894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 182

               
               
               Conread position:5-445
               
               
               Cow position:chr17:21495080-21495525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 109

               
               
               Conread position:5-445
               
               
               Cow position:chr17:36331259-36330805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:302
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:5-446
               
               
               Cow position:chr17:5688644-5688218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:297
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):49, 57

               
               
               Conread position:5-447
               
               
               Cow position:chr17:4213460-4213898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 81

               
               
               Conread position:5-452
               
               
               Cow position:chr17:2034253-2034673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:308
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):121, 62

               
               
               Conread position:5-452
               
               
               Cow position:chr17:5000874-5000427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 112

               
               
               Conread position:5-453
               
               
               Cow position:chr17:18861015-18860562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 70

               
               
               Conread position:5-453
               
               
               Cow position:chr17:20233930-20234375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 169

               
               
               Conread position:5-457
               
               
               Cow position:chr17:15103177-15102728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-457
               
               
               Cow position:chr17:22563899-22564350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-457
               
               
               Cow position:chr17:29292665-29292217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 56

               
               
               Conread position:5-458
               
               
               Cow position:chr17:13922181-13922656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 68

               
               
               Conread position:5-458
               
               
               Cow position:chr17:14003532-14003992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 128

               
               
               Conread position:5-459
               
               
               Cow position:chr17:12289716-12289239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 223

               
               
               Conread position:5-459
               
               
               Cow position:chr17:32457877-32457399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:311
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):127, 414

               
               
               Conread position:5-459
               
               
               Cow position:chr17:32989196-32989644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 110

               
               
               Conread position:5-459
               
               
               Cow position:chr17:32993910-32993456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 110

               
               
               Conread position:5-459
               
               
               Cow position:chr17:42419441-42419879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:300
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):26, 73

               
               
               Conread position:5-459
               
               
               Cow position:chr17:43717605-43717168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 100

               
               
               Conread position:5-460
               
               
               Cow position:chr17:1410543-1410068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 117

               
               
               Conread position:5-460
               
               
               Cow position:chr17:11397373-11397835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 94

               
               
               Conread position:5-460
               
               
               Cow position:chr17:24883860-24883402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 31

               
               
               Conread position:5-460
               
               
               Cow position:chr17:27795351-27795823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 143

               
               
               Conread position:5-460
               
               
               Cow position:chr17:30664982-30665440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 39

               
               
               Conread position:5-460
               
               
               Cow position:chr17:32138694-32138254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 56

               
               
               Conread position:5-466
               
               
               Cow position:chr17:33934043-33933569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:324
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):72, 181

               
               
               Conread position:5-469
               
               
               Cow position:chr17:40771531-40772013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 312

               
               
               Conread position:6-285
               
               
               Cow position:chr17:3498960-3498680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 198

               
               
               Conread position:6-306
               
               
               Cow position:chr17:11056675-11056363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:6-352
               
               
               Cow position:chr17:25815312-25815656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 165

               
               
               Conread position:6-354
               
               
               Cow position:chr17:36504323-36503974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):295, 284

               
               
               Conread position:6-362
               
               
               Cow position:chr17:5255668-5255311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:6-367
               
               
               Cow position:chr17:3471120-3471487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 7

               
               
               Conread position:6-387
               
               
               Cow position:chr17:33271969-33271587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:265
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):121, 60

               
               
               Conread position:6-407
               
               
               Cow position:chr17:23063418-23063835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 62

               
               
               Conread position:6-407
               
               
               Cow position:chr17:38614664-38615076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 40

               
               
               Conread position:6-422
               
               
               Cow position:chr17:10529037-10528597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:6-445
               
               
               Cow position:chr17:8690748-8690298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 157

               
               
               Conread position:6-445
               
               
               Cow position:chr17:41029656-41030091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 307

               
               
               Conread position:6-446
               
               
               Cow position:chr17:20780222-20780670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 48

               
               
               Conread position:6-448
               
               
               Cow position:chr17:17222049-17222497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 31

               
               
               Conread position:6-450
               
               
               Cow position:chr17:21680472-21680938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 224

               
               
               Conread position:6-453
               
               
               Cow position:chr17:40289296-40288837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 62

               
               
               Conread position:6-459
               
               
               Cow position:chr17:15664373-15664843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 168

               
               
               Conread position:6-459
               
               
               Cow position:chr17:38832746-38833211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 185

               
               
               Conread position:6-460
               
               
               Cow position:chr17:23101503-23101050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 62

               
               
               Conread position:6-460
               
               
               Cow position:chr17:29715482-29715036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 44

               
               
               Conread position:6-460
               
               
               Cow position:chr17:32027758-32027283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:6-469
               
               
               Cow position:chr17:14026211-14025732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 122

               
               
               Conread position:7-377
               
               
               Cow position:chr17:26182927-26183306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 185

               
               
               Conread position:7-442
               
               
               Cow position:chr17:25900904-25901351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 108

               
               
               Conread position:7-486
               
               
               Cow position:chr17:21335992-21335494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 30

               
               
               Conread position:9-454
               
               
               Cow position:chr17:40421376-40421834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:299
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):119, 104

               
               
               Conread position:9-460
               
               
               Cow position:chr17:13244313-13243880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 37

               
               
               Conread position:9-460
               
               
               Cow position:chr17:24077113-24077570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 68

               
               
               Conread position:9-460
               
               
               Cow position:chr17:26230646-26231125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 105

               
               
               Conread position:10-466
               
               
               Cow position:chr17:5767608-5768079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 231

               
               
               Conread position:10-469
               
               
               Cow position:chr17:39412790-39412329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):98, 61

               
               
               Conread position:13-230
               
               
               Cow position:chr17:26174660-26174877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):75, 113

               
               
               Conread position:13-453
               
               
               Cow position:chr17:25188994-25189447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 55

               
               
               Conread position:13-453
               
               
               Cow position:chr17:30718705-30718256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 57

               
               
               Conread position:13-457
               
               
               Cow position:chr17:29157141-29157582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:302
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):162, 102

               
               
               Conread position:13-459
               
               
               Cow position:chr17:9853697-9854145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 230

               
               
               Conread position:13-466
               
               
               Cow position:chr17:1783895-1783446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 111

               
               
               Conread position:16-466
               
               
               Cow position:chr17:18720730-18720270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 44

               
               
               Conread position:17-313
               
               
               Cow position:chr17:3843207-3843494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):111, 51

               
               
               Conread position:17-349
               
               
               Cow position:chr17:21313100-21312759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:236
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):71, 185

               
               
               Conread position:20-460
               
               
               Cow position:chr17:18109368-18108918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 418

               
               
               Conread position:21-367
               
               
               Cow position:chr17:1080723-1081061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):112, 92

               
               
               Conread position:24-459
               
               
               Cow position:chr17:8544030-8544471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 95

               
               
               Conread position:25-446
               
               
               Cow position:chr17:16446706-16446282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:284
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):202, 103

               
               
               Conread position:26-290
               
               
               Cow position:chr17:23337290-23337028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):83, 176

               
               
               Conread position:26-457
               
               
               Cow position:chr17:22032959-22032527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 87

               
               
               Conread position:27-453
               
               
               Cow position:chr17:9117368-9117806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 203

               
               
               Conread position:30-442
               
               
               Cow position:chr17:7760742-7760322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 170

               
               
               Conread position:30-459
               
               
               Cow position:chr17:20126349-20126765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 80

               
               
               Conread position:31-445
               
               
               Cow position:chr17:25796611-25796183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:284
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):96, 290

               
               
               Conread position:37-353
               
               
               Cow position:chr17:42347486-42347170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 174

               
               
               Conread position:37-430
               
               
               Cow position:chr17:3503313-3503720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):47, 152

               
               
               Conread position:38-466
               
               
               Cow position:chr17:11296374-11296819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 27

               
               
               Conread position:39-460
               
               
               Cow position:chr17:8079054-8079481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 101

               
               
               Conread position:49-453
               
               
               Cow position:chr17:17059187-17059585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:283
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):79, 64

               
               
               Conread position:50-287
               
               
               Cow position:chr17:24876885-24877128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):8, 205

               
               
               Conread position:51-466
               
               
               Cow position:chr17:21004082-21003651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 187

               
               
               Conread position:53-356
               
               
               Cow position:chr17:44147224-44146917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):7, 65

               
               
               Conread position:54-358
               
               
               Cow position:chr17:21031540-21031846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):240, 70

               
               
               Conread position:57-440
               
               
               Cow position:chr17:27142509-27142894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):28, 175

               
               
               Conread position:57-444
               
               
               Cow position:chr17:16371005-16371410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 58

               
               
               Conread position:57-458
               
               
               Cow position:chr17:18495752-18495353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):57, 29

               
               
               Conread position:57-466
               
               
               Cow position:chr17:11102039-11101638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 134

               
               
               Conread position:58-460
               
               
               Cow position:chr17:17060929-17060510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):55, 97

               
               
               Conread position:61-287
               
               
               Cow position:chr17:26627884-26627653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 53

               
               
               Conread position:61-452
               
               
               Cow position:chr17:21115189-21114793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 106

               
               
               Conread position:64-469
               
               
               Cow position:chr17:11664826-11664402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 58

               
               
               Conread position:66-345
               
               
               Cow position:chr17:4721251-4721540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):61, 106

               
               
               Conread position:66-368
               
               
               Cow position:chr17:25335620-25335324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):237, 73

               
               
               Conread position:66-463
               
               
               Cow position:chr17:31481278-31480869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:69-461
               
               
               Cow position:chr17:32419352-32418946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):13, 171

               
               
               Conread position:70-456
               
               
               Cow position:chr17:27047931-27048320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 72

               
               
               Conread position:77-271
               
               
               Cow position:chr17:14088552-14088353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:77-356
               
               
               Cow position:chr17:9778026-9778300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):51, 93

               
               
               Conread position:77-445
               
               
               Cow position:chr17:24787246-24786870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):51, 137

               
               
               Conread position:77-454
               
               
               Cow position:chr17:32554248-32553890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):114, 40

               
               
               Conread position:77-454
               
               
               Cow position:chr17:36275132-36275496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):51, 93

               
               
               Conread position:77-458
               
               
               Cow position:chr17:12220163-12219772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 164

               
               
               Conread position:77-458
               
               
               Cow position:chr17:36790923-36791293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:262
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):187, 37

               
               
               Conread position:77-460
               
               
               Cow position:chr17:9746296-9746684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 40

               
               
               Conread position:77-460
               
               
               Cow position:chr17:11832361-11831946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:292
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):51, 37

               
               
               Conread position:77-466
               
               
               Cow position:chr17:24587393-24587803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 153

               
               
               Conread position:78-314
               
               
               Cow position:chr17:22781468-22781707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):54, 36

               
               
               Conread position:78-408
               
               
               Cow position:chr17:28539812-28540145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 79

               
               
               Conread position:78-446
               
               
               Cow position:chr17:37482312-37481917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 233

               
               
               Conread position:78-456
               
               
               Cow position:chr17:5423295-5422904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:78-456
               
               
               Cow position:chr17:6423537-6423928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:268
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:78-457
               
               
               Cow position:chr17:2662185-2662589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:280
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):50, 254

               
               
               Conread position:78-460
               
               
               Cow position:chr17:17410074-17410462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:270
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):50, 62

               
               
               Conread position:78-464
               
               
               Cow position:chr17:21755665-21755261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:78-478
               
               
               Cow position:chr17:7697832-7698234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 46

               
               
               Conread position:79-303
               
               
               Cow position:chr17:21017571-21017800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):49, 151

               
               
               Conread position:79-453
               
               
               Cow position:chr17:20157394-20157769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:79-460
               
               
               Cow position:chr17:41290240-41289874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:268
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:80-412
               
               
               Cow position:chr17:7132677-7132318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:82-354
               
               
               Cow position:chr17:15333930-15333655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:82-447
               
               
               Cow position:chr17:39012498-39012873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):36, 185

               
               
               Conread position:83-459
               
               
               Cow position:chr17:25128568-25128185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):45, 59

               
               
               Conread position:84-289
               
               
               Cow position:chr17:29040684-29040478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):24, 127

               
               
               Conread position:84-303
               
               
               Cow position:chr17:20835375-20835598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):44, 144

               
               
               Conread position:84-460
               
               
               Cow position:chr17:11281325-11280931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:277
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):27, 61

               
               
               Conread position:84-480
               
               
               Cow position:chr17:21739102-21738685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 245

               
               
               Conread position:85-436
               
               
               Cow position:chr17:33052646-33052996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:85-444
               
               
               Cow position:chr17:8837158-8836800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):207, 39

               
               
               Conread position:85-450
               
               
               Cow position:chr17:11156710-11156334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:264
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):43, 129

               
               
               Conread position:86-449
               
               
               Cow position:chr17:8279923-8279553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:244
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):164, 29

               
               
               Conread position:86-457
               
               
               Cow position:chr17:25097247-25097622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:86-460
               
               
               Cow position:chr17:15684289-15684679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 116

               
               
               Conread position:87-449
               
               
               Cow position:chr17:24580514-24580137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:266
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:88-458
               
               
               Cow position:chr17:32472005-32471614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):103, 36

               
               
               Conread position:90-285
               
               
               Cow position:chr17:21710293-21710489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 132

               
               
               Conread position:90-460
               
               
               Cow position:chr17:40741435-40741823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 108

               
               
               Conread position:92-339
               
               
               Cow position:chr17:966949-966706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):36, 199

               
               
               Conread position:92-356
               
               
               Cow position:chr17:27765071-27765330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):36, 85

               
               
               Conread position:92-458
               
               
               Cow position:chr17:20932126-20932499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 33

               
               
               Conread position:93-451
               
               
               Cow position:chr17:25032681-25032322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):32, 97

               
               
               Conread position:94-436
               
               
               Cow position:chr17:21243994-21243645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):34, 19

               
               
               Conread position:95-445
               
               
               Cow position:chr17:1035811-1035443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):33, 106

               
               
               Conread position:95-466
               
               
               Cow position:chr17:27429371-27429738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:271
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 135

               
               
               Conread position:96-466
               
               
               Cow position:chr17:6624052-6624411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 182

               
               
               Conread position:97-449
               
               
               Cow position:chr17:41892276-41891904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 149

               
               
               Conread position:98-382
               
               
               Cow position:chr17:44232924-44232628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:101-460
               
               
               Cow position:chr17:32273883-32273516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):211, 25

               
               
               Conread position:102-445
               
               
               Cow position:chr17:5514559-5514909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:105-460
               
               
               Cow position:chr17:10459133-10458763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):10, 77

               
               
               Conread position:105-461
               
               
               Cow position:chr17:9911566-9911929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:256
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):23, 123

               
               
               Conread position:106-343
               
               
               Cow position:chr17:35311225-35311471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 222

               
               
               Conread position:107-368
               
               
               Cow position:chr17:32950077-32950344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):25, 231

               
               
               Conread position:107-452
               
               
               Cow position:chr17:25999921-26000279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):26, 93

               
               
               Conread position:111-465
               
               
               Cow position:chr17:24773492-24773855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):21, 100

               
               
               Conread position:112-451
               
               
               Cow position:chr17:12536658-12536305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):20, 122

               
               
               Conread position:118-457
               
               
               Cow position:chr17:908562-908906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:245
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):10, 92

               
               
               Conread position:130-289
               
               
               Cow position:chr17:34207991-34207831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):61, 97

               
               
               Conread position:130-434
               
               
               Cow position:chr17:24149006-24149326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):62, 196

               
               
               Conread position:130-445
               
               
               Cow position:chr17:12108632-12108959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:130-452
               
               
               Cow position:chr17:20990365-20990029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):166, 95

               
               
               Conread position:130-452
               
               
               Cow position:chr17:33275917-33275589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):83, 61

               
               
               Conread position:130-460
               
               
               Cow position:chr17:24821695-24822030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):153, 95

               
               
               Conread position:133-405
               
               
               Cow position:chr17:21918042-21917759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):97, 51

               
               
               Conread position:134-450
               
               
               Cow position:chr17:38363141-38362837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):158, 47

               
               
               Conread position:134-465
               
               
               Cow position:chr17:12306563-12306221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 92

               
               
               Conread position:135-457
               
               
               Cow position:chr17:17683064-17682745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):144, 55

               
               
               Conread position:136-451
               
               
               Cow position:chr17:979318-979007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):160, 43

               
               
               Conread position:141-451
               
               
               Cow position:chr17:27058713-27058396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):90, 68

               
               
               Conread position:141-466
               
               
               Cow position:chr17:1562934-1562611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):50, 87

               
               
               Conread position:141-466
               
               
               Cow position:chr17:7142704-7143037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):85, 165

               
               
               Conread position:141-466
               
               
               Cow position:chr17:25916732-25917070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):49, 172

               
               
               Conread position:142-460
               
               
               Cow position:chr17:28467977-28468294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):177, 96

               
               
               Conread position:143-331
               
               
               Cow position:chr17:40792065-40792252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):175, 90

               
               
               Conread position:143-413
               
               
               Cow position:chr17:14762277-14762000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):149, 95

               
               
               Conread position:147-460
               
               
               Cow position:chr17:24559145-24559461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):222, 40

               
               
               Conread position:149-452
               
               
               Cow position:chr17:267736-267444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 27

               
               
               Conread position:149-458
               
               
               Cow position:chr17:31037532-31037210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):143, 74

               
               
               Conread position:167-466
               
               
               Cow position:chr17:6328978-6329292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:177-469
               
               
               Cow position:chr17:20884399-20884703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):122, 48

               
               
               Conread position:181-460
               
               
               Cow position:chr17:6848685-6848963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):28, 45

               
               
               Conread position:183-450
               
               
               Cow position:chr17:39857275-39857544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):129, 105

               
               
               Conread position:183-460
               
               
               Cow position:chr17:20874272-20874566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):41, 154

               
               
               Conread position:186-435
               
               
               Cow position:chr17:25501995-25502254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):106, 39

               
               
               Conread position:186-457
               
               
               Cow position:chr17:31856548-31856837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):27, 17

               
               
               Conread position:186-466
               
               
               Cow position:chr17:32348959-32349243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):124, 51

               
               
               Conread position:188-460
               
               
               Cow position:chr17:11215342-11215062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):42, 62

               
               
               Conread position:191-460
               
               
               Cow position:chr17:7136872-7137156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):124, 101

               
               
               Conread position:191-466
               
               
               Cow position:chr17:25616149-25616422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:200-458
               
               
               Cow position:chr17:18920451-18920204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):93, 54

               
               
               Conread position:210-460
               
               
               Cow position:chr17:21325242-21325501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):86, 15

               
               
               Conread position:212-446
               
               
               Cow position:chr17:14652869-14652625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 13

               
               
               Conread position:212-459
               
               
               Cow position:chr17:21489713-21489456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):80, 148

               
               
               Conread position:212-460
               
               
               Cow position:chr17:27203133-27202877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):80, 99

               
               
               Conread position:212-468
               
               
               Cow position:chr17:23517031-23516764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:213-443
               
               
               Cow position:chr17:25342828-25342589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:213-458
               
               
               Cow position:chr17:2275386-2275639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):157, 90

               
               
               Conread position:216-445
               
               
               Cow position:chr17:21758223-21757987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):76, 9

               
               
               Conread position:218-478
               
               
               Cow position:chr17:23883339-23883079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):151, 7

               
               
               Conread position:219-482
               
               
               Cow position:chr17:34751487-34751214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):73, 6

               
               
               Conread position:222-456
               
               
               Cow position:chr17:1469297-1469540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 30

               
               
               Conread position:223-466
               
               
               Cow position:chr17:17193415-17193661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):57, 41

               
               
               Conread position:238-466
               
               
               Cow position:chr17:36864567-36864803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):72, 56

               
               
               Conread position:244-460
               
               
               Cow position:chr17:21806507-21806283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):48, 10

               
               
               Conread position:245-455
               
               
               Cow position:chr17:16158434-16158655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:245-474
               
               
               Cow position:chr17:9770454-9770685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 115

               
               
               Conread position:245-476
               
               
               Cow position:chr17:7590514-7590275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):125, 21

               
               
               Conread position:246-460
               
               
               Cow position:chr17:10432032-10431804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):46, 70

               
               
               Conread position:254-457
               
               
               Cow position:chr17:25126304-25126517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):38, 68

               
               
               Conread position:258-460
               
               
               Cow position:chr17:37816234-37816026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):34, 55

               
               
               Conread position:260-470
               
               
               Cow position:chr17:38263535-38263316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 195

               
               
               Conread position:263-455
               
               
               Cow position:chr17:28982140-28982340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 131

               
               
               Conread position:268-460
               
               
               Cow position:chr17:21922667-21922464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):24, 48

               
               
               Conread position:314-459
               
               
               Cow position:chr17:11224119-11224267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:324-458
               
               
               Cow position:chr17:37430480-37430338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:359-466
               
               
               Cow position:chr17:968951-969060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:365-478
               
               
               Cow position:chr17:21335489-21335376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:2-358
               
               
               Cow position:chr18:49161828-49161451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 7

               
               
               Conread position:3-314
               
               
               Cow position:chr18:601541-601243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):286, 6

               
               
               Conread position:4-290
               
               
               Cow position:chr18:4624800-4624516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):128, 117

               
               
               Conread position:4-304
               
               
               Cow position:chr18:35076016-35076317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 165

               
               
               Conread position:4-431
               
               
               Cow position:chr18:4182557-4182122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 26

               
               
               Conread position:4-485
               
               
               Cow position:chr18:50082607-50082135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 26

               
               
               Conread position:5-288
               
               
               Cow position:chr18:22065731-22065440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):117, 81

               
               
               Conread position:5-290
               
               
               Cow position:chr18:33756523-33756791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):207, 30

               
               
               Conread position:5-339
               
               
               Cow position:chr18:26937357-26937687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 162

               
               
               Conread position:5-345
               
               
               Cow position:chr18:4315929-4316284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 170

               
               
               Conread position:5-354
               
               
               Cow position:chr18:16418063-16417722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 63

               
               
               Conread position:5-356
               
               
               Cow position:chr18:33606260-33606614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 100

               
               
               Conread position:5-356
               
               
               Cow position:chr18:56151024-56150660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 7

               
               
               Conread position:5-373
               
               
               Cow position:chr18:22092418-22092771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):123, 28

               
               
               Conread position:5-373
               
               
               Cow position:chr18:35636717-35636346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 63

               
               
               Conread position:5-404
               
               
               Cow position:chr18:39002165-39001768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 148

               
               
               Conread position:5-409
               
               
               Cow position:chr18:14815705-14815304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 186

               
               
               Conread position:5-437
               
               
               Cow position:chr18:45570654-45571084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:300
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-444
               
               
               Cow position:chr18:3209351-3209801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:307
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 54

               
               
               Conread position:5-444
               
               
               Cow position:chr18:4540242-4539803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 108

               
               
               Conread position:5-445
               
               
               Cow position:chr18:23766790-23766329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:305
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):70, 19

               
               
               Conread position:5-446
               
               
               Cow position:chr18:12241905-12242355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:290
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):83, 179

               
               
               Conread position:5-452
               
               
               Cow position:chr18:47511624-47512095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 225

               
               
               Conread position:5-452
               
               
               Cow position:chr18:55505034-55505492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:298
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):144, 58

               
               
               Conread position:5-453
               
               
               Cow position:chr18:11790562-11791009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):93, 168

               
               
               Conread position:5-455
               
               
               Cow position:chr18:45104817-45104348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 111

               
               
               Conread position:5-456
               
               
               Cow position:chr18:28658278-28657820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 47

               
               
               Conread position:5-457
               
               
               Cow position:chr18:17004884-17005353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 54

               
               
               Conread position:5-458
               
               
               Cow position:chr18:3180050-3180504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 57

               
               
               Conread position:5-458
               
               
               Cow position:chr18:12118215-12117759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 226

               
               
               Conread position:5-458
               
               
               Cow position:chr18:29357007-29356533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:319
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):65, 41

               
               
               Conread position:5-458
               
               
               Cow position:chr18:44262248-44262723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 113

               
               
               Conread position:5-459
               
               
               Cow position:chr18:7649622-7650081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 160

               
               
               Conread position:5-459
               
               
               Cow position:chr18:19193715-19193269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-459
               
               
               Cow position:chr18:37002265-37002728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:314
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):123, 20

               
               
               Conread position:5-460
               
               
               Cow position:chr18:4672957-4673399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 119

               
               
               Conread position:5-460
               
               
               Cow position:chr18:9010362-9010807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 116

               
               
               Conread position:5-460
               
               
               Cow position:chr18:22121250-22120789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 81

               
               
               Conread position:5-460
               
               
               Cow position:chr18:39662407-39662873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:317
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):67, 159

               
               
               Conread position:5-460
               
               
               Cow position:chr18:45904261-45903802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:5-461
               
               
               Cow position:chr18:36458564-36459027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 187

               
               
               Conread position:5-464
               
               
               Cow position:chr18:19645808-19646274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-465
               
               
               Cow position:chr18:9974694-9974225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:5-465
               
               
               Cow position:chr18:51406261-51405809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 25

               
               
               Conread position:5-466
               
               
               Cow position:chr18:20174500-20174030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 187

               
               
               Conread position:5-466
               
               
               Cow position:chr18:28101256-28101736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 226

               
               
               Conread position:5-466
               
               
               Cow position:chr18:31672871-31672412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 20

               
               
               Conread position:5-466
               
               
               Cow position:chr18:51691838-51691360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 254

               
               
               Conread position:5-468
               
               
               Cow position:chr18:3158970-3158490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 49

               
               
               Conread position:5-469
               
               
               Cow position:chr18:5190049-5189589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:315
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:5-481
               
               
               Cow position:chr18:33299535-33300023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:328
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):123, 15

               
               
               Conread position:5-491
               
               
               Cow position:chr18:47183655-47183167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 223

               
               
               Conread position:6-289
               
               
               Cow position:chr18:29768545-29768830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:6-290
               
               
               Cow position:chr18:23447447-23447166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):122, 50

               
               
               Conread position:6-305
               
               
               Cow position:chr18:13172894-13172588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 280

               
               
               Conread position:6-306
               
               
               Cow position:chr18:24022022-24022310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):231, 48

               
               
               Conread position:6-358
               
               
               Cow position:chr18:3098681-3098336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 93

               
               
               Conread position:6-359
               
               
               Cow position:chr18:47314667-47314294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:256
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:6-364
               
               
               Cow position:chr18:1584574-1584240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):300, 53

               
               
               Conread position:6-407
               
               
               Cow position:chr18:49200278-49200675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):122, 71

               
               
               Conread position:6-443
               
               
               Cow position:chr18:11377002-11377442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 53

               
               
               Conread position:6-452
               
               
               Cow position:chr18:20125937-20126392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 53

               
               
               Conread position:6-453
               
               
               Cow position:chr18:1585472-1585026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:293
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):283, 31

               
               
               Conread position:6-453
               
               
               Cow position:chr18:19850114-19849672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 81

               
               
               Conread position:6-458
               
               
               Cow position:chr18:37023925-37023455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:6-480
               
               
               Cow position:chr18:35012674-35012200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 15

               
               
               Conread position:7-447
               
               
               Cow position:chr18:29796801-29796346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:303
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):52, 60

               
               
               Conread position:7-458
               
               
               Cow position:chr18:20641848-20641403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 39

               
               
               Conread position:9-289
               
               
               Cow position:chr18:16045366-16045088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):119, 182

               
               
               Conread position:9-306
               
               
               Cow position:chr18:36445064-36445373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 26

               
               
               Conread position:9-446
               
               
               Cow position:chr18:3416807-3417239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:287
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):124, 62

               
               
               Conread position:9-452
               
               
               Cow position:chr18:16044516-16044060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:297
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):124, 61

               
               
               Conread position:9-453
               
               
               Cow position:chr18:11322223-11322686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 254

               
               
               Conread position:9-453
               
               
               Cow position:chr18:38686730-38687170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 47

               
               
               Conread position:9-460
               
               
               Cow position:chr18:7955782-7956243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 106

               
               
               Conread position:9-465
               
               
               Cow position:chr18:9089340-9089799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 39

               
               
               Conread position:13-436
               
               
               Cow position:chr18:55396955-55397370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:295
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):65, 72

               
               
               Conread position:13-445
               
               
               Cow position:chr18:14586838-14586390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 311

               
               
               Conread position:13-467
               
               
               Cow position:chr18:29371505-29371971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 33

               
               
               Conread position:14-442
               
               
               Cow position:chr18:4666569-4666140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 61

               
               
               Conread position:14-452
               
               
               Cow position:chr18:10656086-10656526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 43

               
               
               Conread position:16-367
               
               
               Cow position:chr18:7947016-7947384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:18-311
               
               
               Cow position:chr18:35057986-35058278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):7, 42

               
               
               Conread position:18-461
               
               
               Cow position:chr18:56159102-56159557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 167

               
               
               Conread position:23-290
               
               
               Cow position:chr18:2099703-2099434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):105, 39

               
               
               Conread position:24-457
               
               
               Cow position:chr18:7359386-7359837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 44

               
               
               Conread position:24-460
               
               
               Cow position:chr18:40758865-40759295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 89

               
               
               Conread position:24-466
               
               
               Cow position:chr18:11867002-11867444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 34

               
               
               Conread position:24-466
               
               
               Cow position:chr18:56181806-56181353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 156

               
               
               Conread position:28-484
               
               
               Cow position:chr18:49100717-49100248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:315
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):10, 41

               
               
               Conread position:30-407
               
               
               Cow position:chr18:24956951-24957340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):98, 172

               
               
               Conread position:32-446
               
               
               Cow position:chr18:56172363-56171933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 226

               
               
               Conread position:37-354
               
               
               Cow position:chr18:8105281-8104961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):71, 93

               
               
               Conread position:37-481
               
               
               Cow position:chr18:56165645-56166097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 202

               
               
               Conread position:46-310
               
               
               Cow position:chr18:238673-238409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):82, 118

               
               
               Conread position:50-458
               
               
               Cow position:chr18:19273424-19273001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 27

               
               
               Conread position:57-432
               
               
               Cow position:chr18:4380977-4381360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):70, 36

               
               
               Conread position:58-336
               
               
               Cow position:chr18:52382380-52382667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):15, 147

               
               
               Conread position:60-459
               
               
               Cow position:chr18:21103074-21102681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):58, 83

               
               
               Conread position:61-414
               
               
               Cow position:chr18:3115147-3115502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):67, 14

               
               
               Conread position:62-483
               
               
               Cow position:chr18:15025364-15025796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:307
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):26, 110

               
               
               Conread position:65-451
               
               
               Cow position:chr18:26998554-26998970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:278
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):62, 289

               
               
               Conread position:66-290
               
               
               Cow position:chr18:26586974-26586742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:66-460
               
               
               Cow position:chr18:55001048-55000647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):104, 58

               
               
               Conread position:68-330
               
               
               Cow position:chr18:18958098-18957839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):59, 165

               
               
               Conread position:73-466
               
               
               Cow position:chr18:12058718-12059100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):55, 11

               
               
               Conread position:76-283
               
               
               Cow position:chr18:38985388-38985599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):52, 163

               
               
               Conread position:76-436
               
               
               Cow position:chr18:42455319-42454952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):164, 52

               
               
               Conread position:77-287
               
               
               Cow position:chr18:47868157-47868372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:77-356
               
               
               Cow position:chr18:11680422-11680707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):51, 162

               
               
               Conread position:77-453
               
               
               Cow position:chr18:46048467-46048842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:77-458
               
               
               Cow position:chr18:30341461-30341090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):37, 65

               
               
               Conread position:77-460
               
               
               Cow position:chr18:25647547-25647152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:277
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:77-491
               
               
               Cow position:chr18:33157523-33157944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 134

               
               
               Conread position:78-304
               
               
               Cow position:chr18:23808170-23807941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):50, 125

               
               
               Conread position:78-353
               
               
               Cow position:chr18:11166682-11166961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 213

               
               
               Conread position:78-425
               
               
               Cow position:chr18:13359765-13360114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 63

               
               
               Conread position:78-466
               
               
               Cow position:chr18:5766132-5766514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:277
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):50, 94

               
               
               Conread position:78-470
               
               
               Cow position:chr18:22214189-22214593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:281
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):41, 84

               
               
               Conread position:79-365
               
               
               Cow position:chr18:48290734-48290449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):48, 176

               
               
               Conread position:79-466
               
               
               Cow position:chr18:18919249-18918857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 83

               
               
               Conread position:80-288
               
               
               Cow position:chr18:39115439-39115226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:80-444
               
               
               Cow position:chr18:6610153-6609772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:269
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):39, 95

               
               
               Conread position:80-446
               
               
               Cow position:chr18:55789287-55788915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:257
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):48, 148

               
               
               Conread position:81-459
               
               
               Cow position:chr18:21266214-21266602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):47, 70

               
               
               Conread position:82-288
               
               
               Cow position:chr18:47931153-47930952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):50, 93

               
               
               Conread position:82-458
               
               
               Cow position:chr18:36265076-36264680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):109, 31

               
               
               Conread position:82-458
               
               
               Cow position:chr18:50381964-50382341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:268
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):46, 162

               
               
               Conread position:82-460
               
               
               Cow position:chr18:39434547-39434919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):208, 55

               
               
               Conread position:83-349
               
               
               Cow position:chr18:47517500-47517240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 30

               
               
               Conread position:83-451
               
               
               Cow position:chr18:5995180-5995556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:261
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):45, 55

               
               
               Conread position:83-459
               
               
               Cow position:chr18:20271312-20270916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):45, 140

               
               
               Conread position:83-466
               
               
               Cow position:chr18:15614136-15613758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:260
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):45, 16

               
               
               Conread position:84-404
               
               
               Cow position:chr18:31725175-31724848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):107, 33

               
               
               Conread position:85-348
               
               
               Cow position:chr18:16847408-16847670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:85-436
               
               
               Cow position:chr18:21175890-21176257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):23, 145

               
               
               Conread position:86-453
               
               
               Cow position:chr18:55498777-55499159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:270
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):152, 28

               
               
               Conread position:86-458
               
               
               Cow position:chr18:28924121-28923754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):28, 99

               
               
               Conread position:86-464
               
               
               Cow position:chr18:38344515-38344903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:259
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):102, 27

               
               
               Conread position:87-457
               
               
               Cow position:chr18:25282843-25282463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 141

               
               
               Conread position:88-376
               
               
               Cow position:chr18:36097914-36098215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:89-447
               
               
               Cow position:chr18:36230997-36230643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:92-460
               
               
               Cow position:chr18:2592456-2592073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:94-435
               
               
               Cow position:chr18:11691691-11691339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):34, 20

               
               
               Conread position:96-401
               
               
               Cow position:chr18:4668773-4668464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):18, 105

               
               
               Conread position:100-287
               
               
               Cow position:chr18:5711943-5711755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):19, 91

               
               
               Conread position:100-461
               
               
               Cow position:chr18:3044155-3044539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):9, 28

               
               
               Conread position:104-366
               
               
               Cow position:chr18:20482144-20481889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):24, 12

               
               
               Conread position:108-460
               
               
               Cow position:chr18:21768360-21768710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:252
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):24, 101

               
               
               Conread position:111-453
               
               
               Cow position:chr18:10322536-10322895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):17, 207

               
               
               Conread position:112-456
               
               
               Cow position:chr18:48713287-48713642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):11, 73

               
               
               Conread position:117-358
               
               
               Cow position:chr18:35582360-35582112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):11, 110

               
               
               Conread position:118-442
               
               
               Cow position:chr18:37382355-37382017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):12, 323

               
               
               Conread position:118-459
               
               
               Cow position:chr18:12023890-12023544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):10, 67

               
               
               Conread position:125-373
               
               
               Cow position:chr18:33007807-33008063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):67, 104

               
               
               Conread position:130-370
               
               
               Cow position:chr18:21205122-21205361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):162, 49

               
               
               Conread position:131-458
               
               
               Cow position:chr18:32883058-32883396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:243
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):48, 99

               
               
               Conread position:132-460
               
               
               Cow position:chr18:17391216-17390899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):162, 56

               
               
               Conread position:135-349
               
               
               Cow position:chr18:28823208-28822993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):96, 174

               
               
               Conread position:135-460
               
               
               Cow position:chr18:247923-247599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):26, 92

               
               
               Conread position:135-460
               
               
               Cow position:chr18:18592233-18592568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):54, 94

               
               
               Conread position:138-444
               
               
               Cow position:chr18:42479828-42479507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):50, 91

               
               
               Conread position:138-460
               
               
               Cow position:chr18:4496124-4495791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):95, 138

               
               
               Conread position:141-373
               
               
               Cow position:chr18:2480417-2480656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):50, 187

               
               
               Conread position:141-453
               
               
               Cow position:chr18:48829020-48828687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:141-471
               
               
               Cow position:chr18:43020623-43020296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):152, 56

               
               
               Conread position:142-379
               
               
               Cow position:chr18:219100-219349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:147-460
               
               
               Cow position:chr18:51392873-51392548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):44, 135

               
               
               Conread position:151-434
               
               
               Cow position:chr18:2864222-2863921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:163-445
               
               
               Cow position:chr18:3211657-3211958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:166-460
               
               
               Cow position:chr18:1954802-1954494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):25, 63

               
               
               Conread position:169-443
               
               
               Cow position:chr18:7108920-7109206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):29, 271

               
               
               Conread position:181-437
               
               
               Cow position:chr18:18369556-18369290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):111, 44

               
               
               Conread position:181-460
               
               
               Cow position:chr18:19896649-19896356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:182-390
               
               
               Cow position:chr18:47812277-47812495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):51, 30

               
               
               Conread position:183-466
               
               
               Cow position:chr18:5072602-5072311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):114, 17

               
               
               Conread position:186-458
               
               
               Cow position:chr18:7415217-7414934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 137

               
               
               Conread position:186-460
               
               
               Cow position:chr18:16686525-16686240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):110, 39

               
               
               Conread position:191-469
               
               
               Cow position:chr18:47835643-47835928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):184, 0

               
               
               Conread position:196-460
               
               
               Cow position:chr18:43555703-43555429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):96, 27

               
               
               Conread position:202-420
               
               
               Cow position:chr18:31125394-31125173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:206-460
               
               
               Cow position:chr18:24266582-24266309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:212-453
               
               
               Cow position:chr18:30586382-30586137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:212-455
               
               
               Cow position:chr18:51850722-51850474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):21, 125

               
               
               Conread position:212-460
               
               
               Cow position:chr18:4556331-4556073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):17, 106

               
               
               Conread position:214-466
               
               
               Cow position:chr18:51643530-51643263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):11, 53

               
               
               Conread position:218-467
               
               
               Cow position:chr18:43950667-43950929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):81, 7

               
               
               Conread position:218-467
               
               
               Cow position:chr18:52854893-52855156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):76, 255

               
               
               Conread position:223-467
               
               
               Cow position:chr18:12273505-12273762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:224-459
               
               
               Cow position:chr18:858668-858920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:224-464
               
               
               Cow position:chr18:1571388-1571136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:225-445
               
               
               Cow position:chr18:51676239-51676011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):67, 39

               
               
               Conread position:225-460
               
               
               Cow position:chr18:16997102-16997349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):27, 46

               
               
               Conread position:225-464
               
               
               Cow position:chr18:36768955-36768712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):144, 68

               
               
               Conread position:225-466
               
               
               Cow position:chr18:5632115-5632371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:238-458
               
               
               Cow position:chr18:48242052-48242285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 143

               
               
               Conread position:238-459
               
               
               Cow position:chr18:4204058-4203836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):55, 69

               
               
               Conread position:242-460
               
               
               Cow position:chr18:23162758-23162981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):14, 218

               
               
               Conread position:244-454
               
               
               Cow position:chr18:47967055-47966837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:247-460
               
               
               Cow position:chr18:4490024-4489811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):101, 67

               
               
               Conread position:250-460
               
               
               Cow position:chr18:4871948-4872158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):42, 69

               
               
               Conread position:254-459
               
               
               Cow position:chr18:29474619-29474837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 160

               
               
               Conread position:254-460
               
               
               Cow position:chr18:19883407-19883628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:255-463
               
               
               Cow position:chr18:49841158-49841375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):39, 164

               
               
               Conread position:260-465
               
               
               Cow position:chr18:49038344-49038564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:269-458
               
               
               Cow position:chr18:56044450-56044645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 67

               
               
               Conread position:297-466
               
               
               Cow position:chr18:24719239-24719414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):71, 19

               
               
               Conread position:305-466
               
               
               Cow position:chr18:46647225-46647057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:306-458
               
               
               Cow position:chr18:46072396-46072558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:317-465
               
               
               Cow position:chr18:51192796-51192640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:327-466
               
               
               Cow position:chr18:50359286-50359431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 135

               
               
               Conread position:2-466
               
               
               Cow position:chr19:24061946-24062402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 6

               
               
               Conread position:5-230
               
               
               Cow position:chr19:21114958-21115184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:5-281
               
               
               Cow position:chr19:24956777-24956517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:5-289
               
               
               Cow position:chr19:36977264-36976978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):86, 47

               
               
               Conread position:5-290
               
               
               Cow position:chr19:25054020-25053736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):59, 32

               
               
               Conread position:5-306
               
               
               Cow position:chr19:3489148-3489455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):136, 99

               
               
               Conread position:5-352
               
               
               Cow position:chr19:8496649-8496297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):123, 73

               
               
               Conread position:5-354
               
               
               Cow position:chr19:4448188-4448546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):217, 63

               
               
               Conread position:5-356
               
               
               Cow position:chr19:47727917-47727568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 119

               
               
               Conread position:5-357
               
               
               Cow position:chr19:42417518-42417867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:245
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):120, 137

               
               
               Conread position:5-358
               
               
               Cow position:chr19:33932492-33932141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 163

               
               
               Conread position:5-359
               
               
               Cow position:chr19:37647189-37646827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:258
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):81, 28

               
               
               Conread position:5-359
               
               
               Cow position:chr19:38392450-38392813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 24

               
               
               Conread position:5-368
               
               
               Cow position:chr19:39697724-39698081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:5-370
               
               
               Cow position:chr19:35622019-35622378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):72, 22

               
               
               Conread position:5-375
               
               
               Cow position:chr19:8839249-8839631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):61, 226

               
               
               Conread position:5-375
               
               
               Cow position:chr19:46918493-46918874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 11

               
               
               Conread position:5-405
               
               
               Cow position:chr19:31825374-31824951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 206

               
               
               Conread position:5-410
               
               
               Cow position:chr19:2589165-2589567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 53

               
               
               Conread position:5-412
               
               
               Cow position:chr19:34425236-34425648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 39

               
               
               Conread position:5-414
               
               
               Cow position:chr19:42240638-42240224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:5-435
               
               
               Cow position:chr19:17274065-17273648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 56

               
               
               Conread position:5-435
               
               
               Cow position:chr19:31594950-31595393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 252

               
               
               Conread position:5-441
               
               
               Cow position:chr19:36125239-36125685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 98

               
               
               Conread position:5-446
               
               
               Cow position:chr19:14592705-14593159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-446
               
               
               Cow position:chr19:15863392-15862947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 192

               
               
               Conread position:5-446
               
               
               Cow position:chr19:42205582-42206027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:307
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):48, 117

               
               
               Conread position:5-447
               
               
               Cow position:chr19:56150406-56149959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 79

               
               
               Conread position:5-450
               
               
               Cow position:chr19:3246383-3245953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:299
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):274, 135

               
               
               Conread position:5-450
               
               
               Cow position:chr19:34956046-34955592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 234

               
               
               Conread position:5-451
               
               
               Cow position:chr19:8033390-8033855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 228

               
               
               Conread position:5-451
               
               
               Cow position:chr19:56063777-56063321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:308
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):53, 41

               
               
               Conread position:5-452
               
               
               Cow position:chr19:23304854-23304381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 191

               
               
               Conread position:5-456
               
               
               Cow position:chr19:18786673-18786209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 28

               
               
               Conread position:5-456
               
               
               Cow position:chr19:34620380-34619916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 28

               
               
               Conread position:5-457
               
               
               Cow position:chr19:5656459-5656012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 225

               
               
               Conread position:5-459
               
               
               Cow position:chr19:12697978-12698434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 63

               
               
               Conread position:5-460
               
               
               Cow position:chr19:268002-268473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 134

               
               
               Conread position:5-460
               
               
               Cow position:chr19:730079-729627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 143

               
               
               Conread position:5-460
               
               
               Cow position:chr19:5185602-5185138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 310

               
               
               Conread position:5-460
               
               
               Cow position:chr19:6515912-6516385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-460
               
               
               Cow position:chr19:14253286-14253751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 32

               
               
               Conread position:5-460
               
               
               Cow position:chr19:29627715-29627273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:305
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:5-460
               
               
               Cow position:chr19:31873758-31874221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 171

               
               
               Conread position:5-460
               
               
               Cow position:chr19:32457294-32457760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 41

               
               
               Conread position:5-460
               
               
               Cow position:chr19:43431667-43431212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 63

               
               
               Conread position:5-463
               
               
               Cow position:chr19:35539956-35540421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 60

               
               
               Conread position:5-466
               
               
               Cow position:chr19:15068342-15067883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 144

               
               
               Conread position:5-466
               
               
               Cow position:chr19:22765269-22765744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 20

               
               
               Conread position:5-466
               
               
               Cow position:chr19:23222295-23222755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:5-466
               
               
               Cow position:chr19:23785840-23786304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 41

               
               
               Conread position:5-466
               
               
               Cow position:chr19:39576918-39576446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 110

               
               
               Conread position:5-469
               
               
               Cow position:chr19:30232393-30232836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:310
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 41

               
               
               Conread position:6-287
               
               
               Cow position:chr19:930803-931088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):121, 64

               
               
               Conread position:6-288
               
               
               Cow position:chr19:7612281-7612555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:6-368
               
               
               Cow position:chr19:29476949-29477314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):121, 237

               
               
               Conread position:6-405
               
               
               Cow position:chr19:4445966-4445559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 19

               
               
               Conread position:6-419
               
               
               Cow position:chr19:2734104-2734526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 62

               
               
               Conread position:6-445
               
               
               Cow position:chr19:10754965-10755404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:299
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):122, 69

               
               
               Conread position:6-459
               
               
               Cow position:chr19:6688353-6687886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:6-459
               
               
               Cow position:chr19:7637570-7637118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 61

               
               
               Conread position:6-460
               
               
               Cow position:chr19:39056897-39057364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 155

               
               
               Conread position:6-465
               
               
               Cow position:chr19:23005713-23005232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:6-466
               
               
               Cow position:chr19:43058184-43058649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 20

               
               
               Conread position:6-475
               
               
               Cow position:chr19:21198779-21199273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 196

               
               
               Conread position:6-476
               
               
               Cow position:chr19:38340319-38339851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 62

               
               
               Conread position:6-479
               
               
               Cow position:chr19:12712228-12711738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 58

               
               
               Conread position:6-482
               
               
               Cow position:chr19:17795546-17796037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:8-445
               
               
               Cow position:chr19:55957915-55957469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:282
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):231, 83

               
               
               Conread position:9-306
               
               
               Cow position:chr19:48409171-48409466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):77, 110

               
               
               Conread position:9-444
               
               
               Cow position:chr19:20671246-20670805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 222

               
               
               Conread position:10-289
               
               
               Cow position:chr19:55422022-55422305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):120, 196

               
               
               Conread position:10-326
               
               
               Cow position:chr19:46181153-46180841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 36

               
               
               Conread position:10-432
               
               
               Cow position:chr19:39661886-39661453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 27

               
               
               Conread position:12-435
               
               
               Cow position:chr19:23403992-23403552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 250

               
               
               Conread position:13-336
               
               
               Cow position:chr19:2138443-2138119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 32

               
               
               Conread position:13-350
               
               
               Cow position:chr19:10786699-10786369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 20

               
               
               Conread position:14-435
               
               
               Cow position:chr19:38842885-38842467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 23

               
               
               Conread position:15-444
               
               
               Cow position:chr19:27348600-27348192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:288
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):113, 100

               
               
               Conread position:16-372
               
               
               Cow position:chr19:10171653-10172026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:21-405
               
               
               Cow position:chr19:39245567-39245962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 151

               
               
               Conread position:25-466
               
               
               Cow position:chr19:12601483-12601930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 141

               
               
               Conread position:26-358
               
               
               Cow position:chr19:38596288-38596625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 9

               
               
               Conread position:30-460
               
               
               Cow position:chr19:2577252-2577676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 118

               
               
               Conread position:31-432
               
               
               Cow position:chr19:33912955-33912535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 18

               
               
               Conread position:35-435
               
               
               Cow position:chr19:26086874-26087287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:279
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):9, 157

               
               
               Conread position:37-259
               
               
               Cow position:chr19:27180573-27180348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):91, 38

               
               
               Conread position:39-459
               
               
               Cow position:chr19:53543194-53542783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 74

               
               
               Conread position:41-450
               
               
               Cow position:chr19:6417287-6417716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 72

               
               
               Conread position:41-470
               
               
               Cow position:chr19:43440850-43441296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 188

               
               
               Conread position:43-459
               
               
               Cow position:chr19:35741846-35742274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 187

               
               
               Conread position:44-453
               
               
               Cow position:chr19:9542207-9541789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 170

               
               
               Conread position:48-445
               
               
               Cow position:chr19:16694351-16693929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:297
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):79, 30

               
               
               Conread position:48-469
               
               
               Cow position:chr19:13129588-13129996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):80, 26

               
               
               Conread position:49-233
               
               
               Cow position:chr19:24192099-24192284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 120

               
               
               Conread position:49-469
               
               
               Cow position:chr19:40051690-40051265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 131

               
               
               Conread position:50-460
               
               
               Cow position:chr19:48474840-48475245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:286
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 15

               
               
               Conread position:52-451
               
               
               Cow position:chr19:47118798-47118386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 36

               
               
               Conread position:63-459
               
               
               Cow position:chr19:28451114-28451508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:274
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):65, 194

               
               
               Conread position:66-290
               
               
               Cow position:chr19:53037441-53037216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):66, 56

               
               
               Conread position:66-457
               
               
               Cow position:chr19:20622374-20622768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:264
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):161, 51

               
               
               Conread position:75-453
               
               
               Cow position:chr19:21335892-21335483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:285
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):8, 41

               
               
               Conread position:77-274
               
               
               Cow position:chr19:7492162-7492355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):17, 88

               
               
               Conread position:77-369
               
               
               Cow position:chr19:14993197-14992906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):85, 40

               
               
               Conread position:77-446
               
               
               Cow position:chr19:25653034-25652657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 22

               
               
               Conread position:77-449
               
               
               Cow position:chr19:4502943-4503326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 125

               
               
               Conread position:77-457
               
               
               Cow position:chr19:10080792-10081189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 201

               
               
               Conread position:77-458
               
               
               Cow position:chr19:13316678-13316306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):120, 36

               
               
               Conread position:77-460
               
               
               Cow position:chr19:14347733-14348128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 358

               
               
               Conread position:77-466
               
               
               Cow position:chr19:41023952-41024349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):51, 87

               
               
               Conread position:77-469
               
               
               Cow position:chr19:36844972-36845376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 38

               
               
               Conread position:78-358
               
               
               Cow position:chr19:19561230-19561523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:78-444
               
               
               Cow position:chr19:31846818-31846449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:269
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):49, 67

               
               
               Conread position:78-446
               
               
               Cow position:chr19:40449756-40450122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):215, 39

               
               
               Conread position:78-446
               
               
               Cow position:chr19:51185151-51185525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 16

               
               
               Conread position:78-466
               
               
               Cow position:chr19:20935479-20935880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 49

               
               
               Conread position:78-474
               
               
               Cow position:chr19:9704106-9703711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 104

               
               
               Conread position:78-483
               
               
               Cow position:chr19:2208051-2207651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:276
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:79-275
               
               
               Cow position:chr19:54666932-54666731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:79-448
               
               
               Cow position:chr19:9387359-9387739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:247
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):54, 81

               
               
               Conread position:79-459
               
               
               Cow position:chr19:7668424-7668812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 94

               
               
               Conread position:81-460
               
               
               Cow position:chr19:15887595-15887203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:276
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):109, 80

               
               
               Conread position:82-422
               
               
               Cow position:chr19:33882429-33882105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):226, 42

               
               
               Conread position:82-453
               
               
               Cow position:chr19:39360868-39361254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 69

               
               
               Conread position:82-453
               
               
               Cow position:chr19:47671480-47671854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):50, 31

               
               
               Conread position:82-460
               
               
               Cow position:chr19:21065507-21065883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):246, 42

               
               
               Conread position:82-466
               
               
               Cow position:chr19:33033718-33033316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):46, 149

               
               
               Conread position:83-357
               
               
               Cow position:chr19:11163352-11163075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):159, 77

               
               
               Conread position:83-445
               
               
               Cow position:chr19:53372166-53371796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:256
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):44, 10

               
               
               Conread position:83-456
               
               
               Cow position:chr19:1664465-1664077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:267
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):45, 147

               
               
               Conread position:83-464
               
               
               Cow position:chr19:42694717-42695115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:276
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):45, 147

               
               
               Conread position:84-451
               
               
               Cow position:chr19:10213401-10213779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):44, 101

               
               
               Conread position:84-458
               
               
               Cow position:chr19:21363711-21363334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):44, 21

               
               
               Conread position:84-460
               
               
               Cow position:chr19:41584704-41585084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:263
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 143

               
               
               Conread position:84-490
               
               
               Cow position:chr19:30886124-30886546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 29

               
               
               Conread position:85-453
               
               
               Cow position:chr19:27612436-27612059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 28

               
               
               Conread position:85-457
               
               
               Cow position:chr19:3812284-3811905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 145

               
               
               Conread position:85-472
               
               
               Cow position:chr19:38638070-38637682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:278
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):42, 108

               
               
               Conread position:86-355
               
               
               Cow position:chr19:419609-419895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):121, 42

               
               
               Conread position:86-434
               
               
               Cow position:chr19:990677-990323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:253
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):212, 95

               
               
               Conread position:86-460
               
               
               Cow position:chr19:48722758-48723140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):42, 19

               
               
               Conread position:86-469
               
               
               Cow position:chr19:7473435-7473821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):139, 29

               
               
               Conread position:87-373
               
               
               Cow position:chr19:19430964-19431244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):32, 59

               
               
               Conread position:87-436
               
               
               Cow position:chr19:10186233-10186595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 76

               
               
               Conread position:87-466
               
               
               Cow position:chr19:1968571-1968193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 139

               
               
               Conread position:88-451
               
               
               Cow position:chr19:52381266-52381628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:254
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):40, 60

               
               
               Conread position:88-452
               
               
               Cow position:chr19:5913216-5912849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:258
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):40, 104

               
               
               Conread position:89-445
               
               
               Cow position:chr19:33468759-33469123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 209

               
               
               Conread position:90-446
               
               
               Cow position:chr19:12748029-12747673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:90-465
               
               
               Cow position:chr19:41945926-41946309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:258
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:92-358
               
               
               Cow position:chr19:1898493-1898229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):135, 31

               
               
               Conread position:94-456
               
               
               Cow position:chr19:21378726-21378356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):25, 87

               
               
               Conread position:94-460
               
               
               Cow position:chr19:53243733-53243362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 166

               
               
               Conread position:94-466
               
               
               Cow position:chr19:3621168-3621556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):18, 84

               
               
               Conread position:98-373
               
               
               Cow position:chr19:32450822-32451107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):30, 132

               
               
               Conread position:98-440
               
               
               Cow position:chr19:20310886-20310542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):29, 128

               
               
               Conread position:99-367
               
               
               Cow position:chr19:25852087-25851816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):36, 216

               
               
               Conread position:100-461
               
               
               Cow position:chr19:22799337-22798958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:101-458
               
               
               Cow position:chr19:19919714-19919347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 43

               
               
               Conread position:102-367
               
               
               Cow position:chr19:25865176-25864908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):33, 213

               
               
               Conread position:104-443
               
               
               Cow position:chr19:433377-433029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):30, 23

               
               
               Conread position:107-460
               
               
               Cow position:chr19:11191870-11191501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:107-460
               
               
               Cow position:chr19:34000963-34001325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 22

               
               
               Conread position:108-459
               
               
               Cow position:chr19:43034996-43035358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):24, 160

               
               
               Conread position:109-465
               
               
               Cow position:chr19:30471582-30471230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):19, 63

               
               
               Conread position:112-454
               
               
               Cow position:chr19:34166125-34166478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):101, 23

               
               
               Conread position:116-443
               
               
               Cow position:chr19:51621418-51621080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):183, 10

               
               
               Conread position:118-453
               
               
               Cow position:chr19:6531655-6531995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 119

               
               
               Conread position:120-367
               
               
               Cow position:chr19:25851722-25851472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):15, 195

               
               
               Conread position:121-464
               
               
               Cow position:chr19:22134377-22134031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 195

               
               
               Conread position:128-465
               
               
               Cow position:chr19:16621580-16621231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):63, 24

               
               
               Conread position:129-460
               
               
               Cow position:chr19:33903646-33903310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):65, 40

               
               
               Conread position:130-442
               
               
               Cow position:chr19:37423499-37423192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):102, 166

               
               
               Conread position:130-446
               
               
               Cow position:chr19:36245709-36245391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):61, 108

               
               
               Conread position:130-457
               
               
               Cow position:chr19:8864526-8864854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):102, 61

               
               
               Conread position:131-445
               
               
               Cow position:chr19:20984992-20984671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):60, 32

               
               
               Conread position:132-412
               
               
               Cow position:chr19:7158954-7158651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):59, 178

               
               
               Conread position:133-460
               
               
               Cow position:chr19:24137038-24137385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):55, 109

               
               
               Conread position:138-459
               
               
               Cow position:chr19:22043558-22043240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):142, 12

               
               
               Conread position:139-457
               
               
               Cow position:chr19:25526072-25526398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:141-445
               
               
               Cow position:chr19:33290270-33290586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):50, 129

               
               
               Conread position:141-457
               
               
               Cow position:chr19:43291836-43292168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):95, 72

               
               
               Conread position:142-467
               
               
               Cow position:chr19:48960179-48960521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):49, 304

               
               
               Conread position:143-445
               
               
               Cow position:chr19:51285416-51285741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 314

               
               
               Conread position:143-457
               
               
               Cow position:chr19:25673729-25673412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):150, 54

               
               
               Conread position:143-457
               
               
               Cow position:chr19:32506320-32506002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):169, 36

               
               
               Conread position:144-419
               
               
               Cow position:chr19:4329256-4328977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):47, 92

               
               
               Conread position:144-445
               
               
               Cow position:chr19:42563923-42564247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):46, 135

               
               
               Conread position:148-458
               
               
               Cow position:chr19:53840311-53840631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):37, 136

               
               
               Conread position:163-460
               
               
               Cow position:chr19:10242394-10242694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):25, 64

               
               
               Conread position:166-389
               
               
               Cow position:chr19:15442579-15442800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):125, 43

               
               
               Conread position:166-411
               
               
               Cow position:chr19:10173303-10173047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:177-452
               
               
               Cow position:chr19:7884407-7884687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):56, 78

               
               
               Conread position:178-451
               
               
               Cow position:chr19:11442806-11443099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:182-460
               
               
               Cow position:chr19:55394735-55395019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):187, 107

               
               
               Conread position:183-416
               
               
               Cow position:chr19:47859485-47859242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:186-416
               
               
               Cow position:chr19:22450104-22449853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:188-445
               
               
               Cow position:chr19:38111307-38111567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):119, 92

               
               
               Conread position:191-457
               
               
               Cow position:chr19:21816800-21817077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:191-459
               
               
               Cow position:chr19:25807464-25807191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):103, 34

               
               
               Conread position:192-457
               
               
               Cow position:chr19:31535966-31536238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):100, 33

               
               
               Conread position:193-475
               
               
               Cow position:chr19:46094799-46094502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):100, 30

               
               
               Conread position:197-485
               
               
               Cow position:chr19:7404536-7404233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:198-460
               
               
               Cow position:chr19:33237021-33237291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):92, 110

               
               
               Conread position:201-466
               
               
               Cow position:chr19:13121426-13121158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):108, 92

               
               
               Conread position:212-453
               
               
               Cow position:chr19:3216877-3217124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:212-459
               
               
               Cow position:chr19:39254594-39254329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:212-466
               
               
               Cow position:chr19:15092268-15092013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):100, 13

               
               
               Conread position:212-485
               
               
               Cow position:chr19:30551887-30552156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:213-460
               
               
               Cow position:chr19:4800602-4800860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):82, 100

               
               
               Conread position:216-460
               
               
               Cow position:chr19:52750897-52750641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):16, 26

               
               
               Conread position:219-457
               
               
               Cow position:chr19:2221213-2220961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:224-445
               
               
               Cow position:chr19:50682569-50682343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):69, 30

               
               
               Conread position:237-445
               
               
               Cow position:chr19:47986739-47986961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):57, 76

               
               
               Conread position:241-469
               
               
               Cow position:chr19:52215051-52215292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):49, 65

               
               
               Conread position:244-452
               
               
               Cow position:chr19:10971204-10970986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:251-481
               
               
               Cow position:chr19:42763098-42763335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):67, 26

               
               
               Conread position:254-453
               
               
               Cow position:chr19:39649175-39648966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:258-476
               
               
               Cow position:chr19:2224195-2223968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 12

               
               
               Conread position:260-463
               
               
               Cow position:chr19:39385132-39384921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):34, 57

               
               
               Conread position:261-460
               
               
               Cow position:chr19:41695758-41695541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:269-458
               
               
               Cow position:chr19:35322221-35322021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:270-452
               
               
               Cow position:chr19:4987851-4987658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:274-456
               
               
               Cow position:chr19:25410923-25410734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:278-460
               
               
               Cow position:chr19:54915768-54915575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:291-466
               
               
               Cow position:chr19:21176802-21176618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:320-460
               
               
               Cow position:chr19:43560570-43560713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):64, 31

               
               
               Conread position:341-445
               
               
               Cow position:chr19:39586116-39586008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:1-358
               
               
               Cow position:chr2:64473970-64473620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:249
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):119, 9

               
               
               Conread position:1-458
               
               
               Cow position:chr2:23271270-23270806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:312
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):75, 106

               
               
               Conread position:2-288
               
               
               Cow position:chr2:34571807-34571517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):125, 7

               
               
               Conread position:2-290
               
               
               Cow position:chr2:48069739-48069450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 68

               
               
               Conread position:2-466
               
               
               Cow position:chr2:45478932-45478462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 84

               
               
               Conread position:4-353
               
               
               Cow position:chr2:27076371-27076724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 253

               
               
               Conread position:4-459
               
               
               Cow position:chr2:24007098-24007545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):292, 121

               
               
               Conread position:4-459
               
               
               Cow position:chr2:39263152-39263617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 111

               
               
               Conread position:4-460
               
               
               Cow position:chr2:54654961-54654487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:315
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):36, 225

               
               
               Conread position:5-230
               
               
               Cow position:chr2:12736413-12736189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:5-273
               
               
               Cow position:chr2:20856160-20855896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 171

               
               
               Conread position:5-274
               
               
               Cow position:chr2:17444442-17444724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):72, 235

               
               
               Conread position:5-280
               
               
               Cow position:chr2:60956045-60956311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):123, 72

               
               
               Conread position:5-289
               
               
               Cow position:chr2:28285867-28285582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:5-289
               
               
               Cow position:chr2:42599588-42599879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):70, 112

               
               
               Conread position:5-290
               
               
               Cow position:chr2:43596507-43596225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):122, 108

               
               
               Conread position:5-290
               
               
               Cow position:chr2:48617642-48617930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):122, 26

               
               
               Conread position:5-305
               
               
               Cow position:chr2:24709680-24709376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 108

               
               
               Conread position:5-306
               
               
               Cow position:chr2:29268727-29269026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 96

               
               
               Conread position:5-318
               
               
               Cow position:chr2:47066917-47066599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):116, 224

               
               
               Conread position:5-334
               
               
               Cow position:chr2:6883890-6884220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 176

               
               
               Conread position:5-352
               
               
               Cow position:chr2:27600882-27600532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 251

               
               
               Conread position:5-353
               
               
               Cow position:chr2:58248202-58247861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):73, 80

               
               
               Conread position:5-356
               
               
               Cow position:chr2:306183-305832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 121

               
               
               Conread position:5-358
               
               
               Cow position:chr2:47784037-47784384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:252
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):110, 126

               
               
               Conread position:5-365
               
               
               Cow position:chr2:49344378-49344736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 92

               
               
               Conread position:5-367
               
               
               Cow position:chr2:36318715-36318358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:258
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):123, 98

               
               
               Conread position:5-367
               
               
               Cow position:chr2:40691150-40691514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 109

               
               
               Conread position:5-367
               
               
               Cow position:chr2:49608254-49608620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 95

               
               
               Conread position:5-368
               
               
               Cow position:chr2:23493198-23493565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 42

               
               
               Conread position:5-368
               
               
               Cow position:chr2:55387212-55387572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 108

               
               
               Conread position:5-368
               
               
               Cow position:chr2:69237936-69238308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:5-373
               
               
               Cow position:chr2:39662361-39662739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 109

               
               
               Conread position:5-373
               
               
               Cow position:chr2:50445557-50445936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:5-444
               
               
               Cow position:chr2:7524473-7524019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 89

               
               
               Conread position:5-444
               
               
               Cow position:chr2:28820027-28820477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 88

               
               
               Conread position:5-445
               
               
               Cow position:chr2:20900806-20900349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 437

               
               
               Conread position:5-445
               
               
               Cow position:chr2:33262953-33262503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 140

               
               
               Conread position:5-445
               
               
               Cow position:chr2:76314190-76313755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 22

               
               
               Conread position:5-446
               
               
               Cow position:chr2:51638209-51638666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 41

               
               
               Conread position:5-448
               
               
               Cow position:chr2:73282898-73282458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):87, 72

               
               
               Conread position:5-449
               
               
               Cow position:chr2:45912972-45912514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:313
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 18

               
               
               Conread position:5-450
               
               
               Cow position:chr2:16514452-16514896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 95

               
               
               Conread position:5-450
               
               
               Cow position:chr2:32417207-32416741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 149

               
               
               Conread position:5-450
               
               
               Cow position:chr2:70895693-70896154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:5-452
               
               
               Cow position:chr2:39815617-39815162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 41

               
               
               Conread position:5-452
               
               
               Cow position:chr2:46227131-46227579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 86

               
               
               Conread position:5-453
               
               
               Cow position:chr2:38273203-38273671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 100

               
               
               Conread position:5-453
               
               
               Cow position:chr2:42192110-42192559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-457
               
               
               Cow position:chr2:17940623-17940162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 109

               
               
               Conread position:5-457
               
               
               Cow position:chr2:70674400-70674851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 115

               
               
               Conread position:5-458
               
               
               Cow position:chr2:778030-777562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 113

               
               
               Conread position:5-458
               
               
               Cow position:chr2:43624863-43624406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 43

               
               
               Conread position:5-458
               
               
               Cow position:chr2:44065255-44065698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-459
               
               
               Cow position:chr2:6038670-6039144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 80

               
               
               Conread position:5-459
               
               
               Cow position:chr2:15298204-15298665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 176

               
               
               Conread position:5-459
               
               
               Cow position:chr2:31499664-31500129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 248

               
               
               Conread position:5-460
               
               
               Cow position:chr2:276362-276804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:299
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):126, 185

               
               
               Conread position:5-460
               
               
               Cow position:chr2:27338119-27337648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 28

               
               
               Conread position:5-460
               
               
               Cow position:chr2:28711314-28710875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:307
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):122, 86

               
               
               Conread position:5-460
               
               
               Cow position:chr2:40728031-40728479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:310
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):149, 41

               
               
               Conread position:5-460
               
               
               Cow position:chr2:65931636-65932096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 41

               
               
               Conread position:5-460
               
               
               Cow position:chr2:67596336-67595889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:316
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):112, 49

               
               
               Conread position:5-460
               
               
               Cow position:chr2:76969513-76969048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 28

               
               
               Conread position:5-460
               
               
               Cow position:chr2:81927516-81927976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 93

               
               
               Conread position:5-461
               
               
               Cow position:chr2:45623689-45624144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):351, 44

               
               
               Conread position:5-465
               
               
               Cow position:chr2:37009081-37009545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 180

               
               
               Conread position:5-466
               
               
               Cow position:chr2:18997401-18997856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):316, 94

               
               
               Conread position:5-466
               
               
               Cow position:chr2:19212380-19211920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 110

               
               
               Conread position:5-466
               
               
               Cow position:chr2:24270887-24271354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 111

               
               
               Conread position:5-466
               
               
               Cow position:chr2:32432068-32431598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:326
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):72, 186

               
               
               Conread position:5-466
               
               
               Cow position:chr2:38659114-38658654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 20

               
               
               Conread position:5-466
               
               
               Cow position:chr2:41019529-41019076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:326
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):164, 31

               
               
               Conread position:5-466
               
               
               Cow position:chr2:42800714-42801175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 32

               
               
               Conread position:5-466
               
               
               Cow position:chr2:42969761-42970246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:327
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):108, 63

               
               
               Conread position:5-466
               
               
               Cow position:chr2:45499534-45499063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 167

               
               
               Conread position:5-466
               
               
               Cow position:chr2:46312114-46312579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 100

               
               
               Conread position:5-466
               
               
               Cow position:chr2:54789937-54790422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 113

               
               
               Conread position:5-466
               
               
               Cow position:chr2:70703921-70704395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 41

               
               
               Conread position:5-466
               
               
               Cow position:chr2:70908652-70908193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 116

               
               
               Conread position:5-466
               
               
               Cow position:chr2:76110048-76110532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 53

               
               
               Conread position:5-467
               
               
               Cow position:chr2:55632438-55632913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 224

               
               
               Conread position:5-469
               
               
               Cow position:chr2:36963198-36963660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 61

               
               
               Conread position:5-469
               
               
               Cow position:chr2:59397396-59396916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 398

               
               
               Conread position:5-479
               
               
               Cow position:chr2:30643001-30642513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 72

               
               
               Conread position:5-480
               
               
               Cow position:chr2:2590278-2589806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:314
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):50, 15

               
               
               Conread position:6-228
               
               
               Cow position:chr2:29291878-29291654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:6-246
               
               
               Cow position:chr2:78750201-78750445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:6-270
               
               
               Cow position:chr2:2485721-2485454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):121, 108

               
               
               Conread position:6-288
               
               
               Cow position:chr2:14883947-14884230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 109

               
               
               Conread position:6-290
               
               
               Cow position:chr2:78744365-78744651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):122, 108

               
               
               Conread position:6-313
               
               
               Cow position:chr2:80161593-80161281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):16, 305

               
               
               Conread position:6-333
               
               
               Cow position:chr2:840823-841155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 305

               
               
               Conread position:6-339
               
               
               Cow position:chr2:21356181-21355849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:241
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):122, 39

               
               
               Conread position:6-354
               
               
               Cow position:chr2:21407592-21407938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:246
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):122, 62

               
               
               Conread position:6-356
               
               
               Cow position:chr2:24668814-24669174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):66, 303

               
               
               Conread position:6-357
               
               
               Cow position:chr2:46184609-46184247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 27

               
               
               Conread position:6-367
               
               
               Cow position:chr2:1211104-1210735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 181

               
               
               Conread position:6-429
               
               
               Cow position:chr2:37072477-37072895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 31

               
               
               Conread position:6-431
               
               
               Cow position:chr2:70945063-70945504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 31

               
               
               Conread position:6-445
               
               
               Cow position:chr2:68110078-68109627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 59

               
               
               Conread position:6-453
               
               
               Cow position:chr2:1303614-1304071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 39

               
               
               Conread position:6-453
               
               
               Cow position:chr2:47098269-47097831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 71

               
               
               Conread position:6-453
               
               
               Cow position:chr2:69251014-69250547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 109

               
               
               Conread position:6-457
               
               
               Cow position:chr2:36077012-36077478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 109

               
               
               Conread position:6-458
               
               
               Cow position:chr2:14710457-14709993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 207

               
               
               Conread position:6-459
               
               
               Cow position:chr2:15059400-15058933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 90

               
               
               Conread position:6-459
               
               
               Cow position:chr2:18858472-18858016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 174

               
               
               Conread position:6-459
               
               
               Cow position:chr2:47644727-47645176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 57

               
               
               Conread position:6-459
               
               
               Cow position:chr2:65270030-65269561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 87

               
               
               Conread position:6-460
               
               
               Cow position:chr2:23712555-23713002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:295
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):91, 128

               
               
               Conread position:6-460
               
               
               Cow position:chr2:32264739-32264262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 296

               
               
               Conread position:6-460
               
               
               Cow position:chr2:44081113-44081566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 167

               
               
               Conread position:6-460
               
               
               Cow position:chr2:56351252-56350788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 87

               
               
               Conread position:6-460
               
               
               Cow position:chr2:72527619-72528088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 62

               
               
               Conread position:6-463
               
               
               Cow position:chr2:46294370-46293917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 56

               
               
               Conread position:6-466
               
               
               Cow position:chr2:69419903-69419448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:318
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):72, 96

               
               
               Conread position:6-469
               
               
               Cow position:chr2:13369324-13369792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 56

               
               
               Conread position:7-287
               
               
               Cow position:chr2:53574775-53575049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 6

               
               
               Conread position:7-353
               
               
               Cow position:chr2:46171205-46170865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 45

               
               
               Conread position:7-446
               
               
               Cow position:chr2:549654-549215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 93

               
               
               Conread position:7-446
               
               
               Cow position:chr2:77157689-77157233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 184

               
               
               Conread position:7-449
               
               
               Cow position:chr2:64533011-64533450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):103, 30

               
               
               Conread position:7-459
               
               
               Cow position:chr2:59953188-59952733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 61

               
               
               Conread position:8-460
               
               
               Cow position:chr2:40403355-40402898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 164

               
               
               Conread position:9-290
               
               
               Cow position:chr2:32406341-32406629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):57, 106

               
               
               Conread position:9-290
               
               
               Cow position:chr2:52386255-52385969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:9-357
               
               
               Cow position:chr2:81791910-81791553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:248
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):67, 35

               
               
               Conread position:9-414
               
               
               Cow position:chr2:22072-21654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 165

               
               
               Conread position:9-419
               
               
               Cow position:chr2:52344429-52344839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 104

               
               
               Conread position:9-440
               
               
               Cow position:chr2:15571865-15571443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 268

               
               
               Conread position:9-453
               
               
               Cow position:chr2:14853990-14854428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):365, 104

               
               
               Conread position:9-459
               
               
               Cow position:chr2:22372277-22371824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):361, 66

               
               
               Conread position:9-469
               
               
               Cow position:chr2:14825951-14826414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 252

               
               
               Conread position:10-367
               
               
               Cow position:chr2:76340998-76340623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:11-466
               
               
               Cow position:chr2:38965290-38965752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 66

               
               
               Conread position:12-369
               
               
               Cow position:chr2:1365223-1364860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 8

               
               
               Conread position:13-441
               
               
               Cow position:chr2:47116234-47115809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:296
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):115, 33

               
               
               Conread position:13-459
               
               
               Cow position:chr2:71437707-71437249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:309
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):115, 20

               
               
               Conread position:13-481
               
               
               Cow position:chr2:79403768-79404242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 111

               
               
               Conread position:14-437
               
               
               Cow position:chr2:50277694-50278128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 100

               
               
               Conread position:14-440
               
               
               Cow position:chr2:53533135-53532703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 174

               
               
               Conread position:14-453
               
               
               Cow position:chr2:45439130-45439558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 42

               
               
               Conread position:14-460
               
               
               Cow position:chr2:27178322-27178775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 107

               
               
               Conread position:15-445
               
               
               Cow position:chr2:16513528-16513966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:297
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):119, 88

               
               
               Conread position:16-356
               
               
               Cow position:chr2:52332952-52332620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):112, 36

               
               
               Conread position:16-368
               
               
               Cow position:chr2:63865657-63865296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):112, 62

               
               
               Conread position:16-450
               
               
               Cow position:chr2:28302998-28303438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:17-287
               
               
               Cow position:chr2:62761772-62761493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:17-306
               
               
               Cow position:chr2:29717170-29716861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):68, 19

               
               
               Conread position:17-343
               
               
               Cow position:chr2:9591614-9591936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):111, 67

               
               
               Conread position:17-458
               
               
               Cow position:chr2:192781-192338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 59

               
               
               Conread position:20-459
               
               
               Cow position:chr2:81388369-81388821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 13

               
               
               Conread position:20-461
               
               
               Cow position:chr2:74353582-74354032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:300
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):108, 52

               
               
               Conread position:20-466
               
               
               Cow position:chr2:32114744-32115203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 29

               
               
               Conread position:21-354
               
               
               Cow position:chr2:37921099-37920770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):170, 96

               
               
               Conread position:21-460
               
               
               Cow position:chr2:46201951-46202391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 48

               
               
               Conread position:24-354
               
               
               Cow position:chr2:13543710-13544039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 90

               
               
               Conread position:24-458
               
               
               Cow position:chr2:45784418-45784866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 89

               
               
               Conread position:24-460
               
               
               Cow position:chr2:69747942-69747487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 216

               
               
               Conread position:24-466
               
               
               Cow position:chr2:42255113-42255570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 207

               
               
               Conread position:27-457
               
               
               Cow position:chr2:78116667-78116237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):92, 41

               
               
               Conread position:30-434
               
               
               Cow position:chr2:33497516-33497102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 295

               
               
               Conread position:30-460
               
               
               Cow position:chr2:74260147-74260585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:290
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):98, 83

               
               
               Conread position:38-285
               
               
               Cow position:chr2:4254840-4254591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):90, 190

               
               
               Conread position:38-436
               
               
               Cow position:chr2:9062966-9063378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 192

               
               
               Conread position:40-290
               
               
               Cow position:chr2:73985323-73985068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 186

               
               
               Conread position:40-357
               
               
               Cow position:chr2:74031290-74030970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 186

               
               
               Conread position:48-446
               
               
               Cow position:chr2:46033030-46033450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:290
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):40, 104

               
               
               Conread position:48-463
               
               
               Cow position:chr2:86308182-86307747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):79, 23

               
               
               Conread position:49-460
               
               
               Cow position:chr2:56846459-56846876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 186

               
               
               Conread position:49-491
               
               
               Cow position:chr2:46231059-46230601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 19

               
               
               Conread position:54-464
               
               
               Cow position:chr2:38886939-38886507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 32

               
               
               Conread position:59-453
               
               
               Cow position:chr2:54700166-54700578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 55

               
               
               Conread position:62-450
               
               
               Cow position:chr2:41185191-41185575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:63-466
               
               
               Cow position:chr2:42607792-42608205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 83

               
               
               Conread position:64-444
               
               
               Cow position:chr2:38206046-38205645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:66-446
               
               
               Cow position:chr2:13582308-13582698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 47

               
               
               Conread position:66-474
               
               
               Cow position:chr2:57939406-57939825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:283
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):62, 173

               
               
               Conread position:67-336
               
               
               Cow position:chr2:50777500-50777768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):34, 8

               
               
               Conread position:69-456
               
               
               Cow position:chr2:54789505-54789899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:267
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):6, 60

               
               
               Conread position:75-479
               
               
               Cow position:chr2:41461097-41461517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):26, 11

               
               
               Conread position:77-290
               
               
               Cow position:chr2:70746532-70746746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):50, 75

               
               
               Conread position:77-304
               
               
               Cow position:chr2:41525982-41525759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):114, 43

               
               
               Conread position:77-349
               
               
               Cow position:chr2:85246597-85246322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):37, 234

               
               
               Conread position:77-354
               
               
               Cow position:chr2:25928188-25928471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):51, 77

               
               
               Conread position:77-368
               
               
               Cow position:chr2:59906293-59906013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 36

               
               
               Conread position:77-373
               
               
               Cow position:chr2:45469739-45470041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 192

               
               
               Conread position:77-430
               
               
               Cow position:chr2:28653795-28653436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:77-452
               
               
               Cow position:chr2:13354410-13354800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 243

               
               
               Conread position:77-453
               
               
               Cow position:chr2:29802373-29802014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:262
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):37, 97

               
               
               Conread position:77-460
               
               
               Cow position:chr2:6160604-6160214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:257
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):38, 110

               
               
               Conread position:77-460
               
               
               Cow position:chr2:46189355-46188965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:267
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):51, 37

               
               
               Conread position:77-460
               
               
               Cow position:chr2:66480438-66480057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 9

               
               
               Conread position:77-461
               
               
               Cow position:chr2:50766223-50766601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:276
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):50, 181

               
               
               Conread position:77-464
               
               
               Cow position:chr2:25597758-25597362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):34, 117

               
               
               Conread position:77-465
               
               
               Cow position:chr2:41248303-41248704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 62

               
               
               Conread position:77-466
               
               
               Cow position:chr2:80224-79821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 126

               
               
               Conread position:77-466
               
               
               Cow position:chr2:37113463-37113057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 30

               
               
               Conread position:77-466
               
               
               Cow position:chr2:39068044-39068423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):118, 40

               
               
               Conread position:78-357
               
               
               Cow position:chr2:42938564-42938280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 43

               
               
               Conread position:78-358
               
               
               Cow position:chr2:45311391-45311100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):56, 160

               
               
               Conread position:78-367
               
               
               Cow position:chr2:52170987-52171284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 169

               
               
               Conread position:78-372
               
               
               Cow position:chr2:51594501-51594798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:215
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):50, 120

               
               
               Conread position:78-373
               
               
               Cow position:chr2:51824664-51824959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:78-429
               
               
               Cow position:chr2:68876874-68877222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):50, 82

               
               
               Conread position:78-440
               
               
               Cow position:chr2:73095048-73094686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):49, 111

               
               
               Conread position:78-442
               
               
               Cow position:chr2:30816693-30817079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:78-445
               
               
               Cow position:chr2:26102516-26102881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 177

               
               
               Conread position:78-457
               
               
               Cow position:chr2:6901536-6901902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 51

               
               
               Conread position:78-464
               
               
               Cow position:chr2:32446574-32446207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:267
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):214, 36

               
               
               Conread position:78-466
               
               
               Cow position:chr2:27173103-27173502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 151

               
               
               Conread position:78-466
               
               
               Cow position:chr2:64322991-64323377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:274
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):176, 23

               
               
               Conread position:78-469
               
               
               Cow position:chr2:14349531-14349908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:265
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):21, 104

               
               
               Conread position:79-307
               
               
               Cow position:chr2:77359227-77359447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:79-356
               
               
               Cow position:chr2:25283547-25283829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):49, 240

               
               
               Conread position:79-356
               
               
               Cow position:chr2:25285291-25285573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):49, 240

               
               
               Conread position:79-373
               
               
               Cow position:chr2:1755774-1756075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):116, 45

               
               
               Conread position:79-445
               
               
               Cow position:chr2:82957412-82957792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:79-460
               
               
               Cow position:chr2:41954616-41955014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 45

               
               
               Conread position:79-466
               
               
               Cow position:chr2:16428663-16428262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:80-460
               
               
               Cow position:chr2:47008608-47008215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 234

               
               
               Conread position:80-466
               
               
               Cow position:chr2:1073269-1073654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:253
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):48, 148

               
               
               Conread position:81-446
               
               
               Cow position:chr2:50580108-50580477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:82-445
               
               
               Cow position:chr2:32403224-32402855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):7, 83

               
               
               Conread position:82-452
               
               
               Cow position:chr2:32408735-32408388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 33

               
               
               Conread position:82-484
               
               
               Cow position:chr2:4384152-4383745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:83-466
               
               
               Cow position:chr2:17967292-17966892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 11

               
               
               Conread position:84-453
               
               
               Cow position:chr2:51799579-51799205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:262
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):44, 88

               
               
               Conread position:84-458
               
               
               Cow position:chr2:47072933-47073315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 71

               
               
               Conread position:84-459
               
               
               Cow position:chr2:43835821-43835431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 29

               
               
               Conread position:84-460
               
               
               Cow position:chr2:18621148-18621545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:283
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):10, 32

               
               
               Conread position:85-262
               
               
               Cow position:chr2:80178020-80177841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:85-368
               
               
               Cow position:chr2:1658242-1658526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 85

               
               
               Conread position:85-373
               
               
               Cow position:chr2:11616842-11617129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:85-430
               
               
               Cow position:chr2:14556008-14555653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:85-466
               
               
               Cow position:chr2:62744264-62743870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:259
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):106, 28

               
               
               Conread position:86-444
               
               
               Cow position:chr2:31750225-31749856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:87-356
               
               
               Cow position:chr2:28118246-28118518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 105

               
               
               Conread position:87-423
               
               
               Cow position:chr2:28319098-28318780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):91, 26

               
               
               Conread position:87-444
               
               
               Cow position:chr2:68190891-68190529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):45, 26

               
               
               Conread position:87-445
               
               
               Cow position:chr2:36435946-36436320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:254
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):40, 151

               
               
               Conread position:87-447
               
               
               Cow position:chr2:42309809-42309440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 69

               
               
               Conread position:87-459
               
               
               Cow position:chr2:46909698-46909308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):36, 148

               
               
               Conread position:88-460
               
               
               Cow position:chr2:19287331-19286950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 138

               
               
               Conread position:88-464
               
               
               Cow position:chr2:47990186-47990570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:90-290
               
               
               Cow position:chr2:36630717-36630921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:90-373
               
               
               Cow position:chr2:43578049-43577763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 134

               
               
               Conread position:90-459
               
               
               Cow position:chr2:15597715-15597348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 24

               
               
               Conread position:90-465
               
               
               Cow position:chr2:39584199-39584584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:265
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):104, 139

               
               
               Conread position:90-469
               
               
               Cow position:chr2:21383109-21382714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 140

               
               
               Conread position:91-458
               
               
               Cow position:chr2:73353537-73353919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:92-469
               
               
               Cow position:chr2:24393939-24393560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):36, 138

               
               
               Conread position:93-368
               
               
               Cow position:chr2:76183052-76182782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):200, 24

               
               
               Conread position:94-338
               
               
               Cow position:chr2:25964733-25964487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 115

               
               
               Conread position:94-458
               
               
               Cow position:chr2:53851185-53851563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:257
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):34, 19

               
               
               Conread position:96-437
               
               
               Cow position:chr2:46194549-46194887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):32, 213

               
               
               Conread position:97-466
               
               
               Cow position:chr2:44551079-44550715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):21, 31

               
               
               Conread position:98-460
               
               
               Cow position:chr2:80904169-80903785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):133, 15

               
               
               Conread position:99-446
               
               
               Cow position:chr2:74249470-74249113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):15, 213

               
               
               Conread position:100-446
               
               
               Cow position:chr2:39564111-39564468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:252
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):28, 128

               
               
               Conread position:100-457
               
               
               Cow position:chr2:62644357-62644718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):12, 51

               
               
               Conread position:101-358
               
               
               Cow position:chr2:20940198-20940459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):27, 174

               
               
               Conread position:104-457
               
               
               Cow position:chr2:11599202-11599548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):24, 81

               
               
               Conread position:107-358
               
               
               Cow position:chr2:69770268-69770524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):21, 127

               
               
               Conread position:107-402
               
               
               Cow position:chr2:34535393-34535086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):21, 104

               
               
               Conread position:107-444
               
               
               Cow position:chr2:13604230-13604582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):21, 122

               
               
               Conread position:107-453
               
               
               Cow position:chr2:6697728-6697382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 91

               
               
               Conread position:107-460
               
               
               Cow position:chr2:50565691-50566063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:255
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:108-444
               
               
               Cow position:chr2:85925826-85926172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):20, 102

               
               
               Conread position:108-457
               
               
               Cow position:chr2:80963879-80963525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 70

               
               
               Conread position:109-448
               
               
               Cow position:chr2:81349118-81348760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):19, 121

               
               
               Conread position:109-461
               
               
               Cow position:chr2:72183723-72183361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):19, 129

               
               
               Conread position:110-460
               
               
               Cow position:chr2:60463047-60462700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):182, 71

               
               
               Conread position:110-460
               
               
               Cow position:chr2:60468426-60468079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):121, 71

               
               
               Conread position:110-471
               
               
               Cow position:chr2:26806346-26805975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:254
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):22, 116

               
               
               Conread position:111-354
               
               
               Cow position:chr2:46020674-46020920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):17, 101

               
               
               Conread position:112-443
               
               
               Cow position:chr2:50408458-50408785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):244, 12

               
               
               Conread position:117-436
               
               
               Cow position:chr2:46375154-46374838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 96

               
               
               Conread position:117-447
               
               
               Cow position:chr2:44229915-44229578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:237
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):11, 164

               
               
               Conread position:118-368
               
               
               Cow position:chr2:55960832-55960582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):10, 65

               
               
               Conread position:118-375
               
               
               Cow position:chr2:47808505-47808765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):10, 157

               
               
               Conread position:118-460
               
               
               Cow position:chr2:80275516-80275165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):10, 117

               
               
               Conread position:120-452
               
               
               Cow position:chr2:38362594-38362243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):7, 110

               
               
               Conread position:125-358
               
               
               Cow position:chr2:47189054-47189292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):67, 187

               
               
               Conread position:125-457
               
               
               Cow position:chr2:44051087-44051435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 107

               
               
               Conread position:125-460
               
               
               Cow position:chr2:29159686-29160036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):112, 145

               
               
               Conread position:125-460
               
               
               Cow position:chr2:46051519-46051180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):138, 41

               
               
               Conread position:126-458
               
               
               Cow position:chr2:21380618-21380276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 314

               
               
               Conread position:130-425
               
               
               Cow position:chr2:16564472-16564771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):58, 181

               
               
               Conread position:130-443
               
               
               Cow position:chr2:44232666-44232341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):64, 21

               
               
               Conread position:130-453
               
               
               Cow position:chr2:69823376-69823712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 11

               
               
               Conread position:130-463
               
               
               Cow position:chr2:38795973-38795635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):107, 149

               
               
               Conread position:130-463
               
               
               Cow position:chr2:47624609-47624275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):239, 31

               
               
               Conread position:130-469
               
               
               Cow position:chr2:39513815-39514175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):162, 13

               
               
               Conread position:131-444
               
               
               Cow position:chr2:56937474-56937793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):161, 69

               
               
               Conread position:132-354
               
               
               Cow position:chr2:68716878-68716653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):162, 92

               
               
               Conread position:132-437
               
               
               Cow position:chr2:1486970-1487277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):100, 47

               
               
               Conread position:133-444
               
               
               Cow position:chr2:23301539-23301844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):58, 133

               
               
               Conread position:136-452
               
               
               Cow position:chr2:23848026-23847715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):156, 44

               
               
               Conread position:137-466
               
               
               Cow position:chr2:46120841-46120505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:141-456
               
               
               Cow position:chr2:16505677-16505349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):47, 86

               
               
               Conread position:141-459
               
               
               Cow position:chr2:71622252-71621920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):50, 87

               
               
               Conread position:141-460
               
               
               Cow position:chr2:40488611-40488935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):60, 117

               
               
               Conread position:141-465
               
               
               Cow position:chr2:43789905-43790239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):155, 40

               
               
               Conread position:141-473
               
               
               Cow position:chr2:47152738-47152409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:142-457
               
               
               Cow position:chr2:61421372-61421042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):95, 109

               
               
               Conread position:143-446
               
               
               Cow position:chr2:1638400-1638718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):48, 86

               
               
               Conread position:143-457
               
               
               Cow position:chr2:7383879-7383563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):48, 57

               
               
               Conread position:147-356
               
               
               Cow position:chr2:46353688-46353469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):145, 77

               
               
               Conread position:148-452
               
               
               Cow position:chr2:26850969-26851285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):65, 43

               
               
               Conread position:151-445
               
               
               Cow position:chr2:70495081-70495382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):40, 76

               
               
               Conread position:151-457
               
               
               Cow position:chr2:63332003-63331676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 133

               
               
               Conread position:151-467
               
               
               Cow position:chr2:73360301-73359971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):40, 152

               
               
               Conread position:152-451
               
               
               Cow position:chr2:17328560-17328870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):142, 39

               
               
               Conread position:152-460
               
               
               Cow position:chr2:1762600-1762923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 94

               
               
               Conread position:155-449
               
               
               Cow position:chr2:58056879-58057178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):36, 126

               
               
               Conread position:159-446
               
               
               Cow position:chr2:13709289-13709584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):210, 0

               
               
               Conread position:161-451
               
               
               Cow position:chr2:46119943-46119648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):21, 161

               
               
               Conread position:166-460
               
               
               Cow position:chr2:46343313-46343018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):60, 89

               
               
               Conread position:166-469
               
               
               Cow position:chr2:78249562-78249874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):128, 59

               
               
               Conread position:172-460
               
               
               Cow position:chr2:70780927-70781220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):53, 34

               
               
               Conread position:177-450
               
               
               Cow position:chr2:83410346-83410625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):115, 87

               
               
               Conread position:178-466
               
               
               Cow position:chr2:45565536-45565842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:181-455
               
               
               Cow position:chr2:28257301-28257587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):52, 158

               
               
               Conread position:181-459
               
               
               Cow position:chr2:84970867-84970585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):176, 10

               
               
               Conread position:181-466
               
               
               Cow position:chr2:60910040-60910328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):188, 56

               
               
               Conread position:186-460
               
               
               Cow position:chr2:41622328-41622610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):105, 50

               
               
               Conread position:186-465
               
               
               Cow position:chr2:46130304-46130024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):101, 47

               
               
               Conread position:186-466
               
               
               Cow position:chr2:31460485-31460196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):106, 68

               
               
               Conread position:187-448
               
               
               Cow position:chr2:76764858-76764589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):105, 38

               
               
               Conread position:187-455
               
               
               Cow position:chr2:47055754-47056031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):110, 85

               
               
               Conread position:188-451
               
               
               Cow position:chr2:7573653-7573385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):64, 19

               
               
               Conread position:191-459
               
               
               Cow position:chr2:34917970-34918259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:192-457
               
               
               Cow position:chr2:58135546-58135266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):21, 95

               
               
               Conread position:192-466
               
               
               Cow position:chr2:24593723-24594001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):100, 10

               
               
               Conread position:193-445
               
               
               Cow position:chr2:20362792-20362541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):172, 49

               
               
               Conread position:194-459
               
               
               Cow position:chr2:54967859-54968136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):85, 129

               
               
               Conread position:196-452
               
               
               Cow position:chr2:45367149-45367414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):90, 29

               
               
               Conread position:197-460
               
               
               Cow position:chr2:67745109-67745371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):103, 176

               
               
               Conread position:198-460
               
               
               Cow position:chr2:12558673-12558404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):94, 244

               
               
               Conread position:202-457
               
               
               Cow position:chr2:44004816-44005081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):18, 77

               
               
               Conread position:212-458
               
               
               Cow position:chr2:76861591-76861329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):75, 114

               
               
               Conread position:213-444
               
               
               Cow position:chr2:17410133-17409894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:213-472
               
               
               Cow position:chr2:43907313-43907046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):157, 77

               
               
               Conread position:216-460
               
               
               Cow position:chr2:39597838-39598092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):76, 9

               
               
               Conread position:217-452
               
               
               Cow position:chr2:30351827-30351585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):5, 38

               
               
               Conread position:219-451
               
               
               Cow position:chr2:12051027-12051271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):11, 145

               
               
               Conread position:223-453
               
               
               Cow position:chr2:80769999-80770239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:223-460
               
               
               Cow position:chr2:40597461-40597698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):69, 31

               
               
               Conread position:224-459
               
               
               Cow position:chr2:44222704-44222952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:225-457
               
               
               Cow position:chr2:44025258-44025503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:225-459
               
               
               Cow position:chr2:48635161-48634915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:238-429
               
               
               Cow position:chr2:26879980-26880180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:238-448
               
               
               Cow position:chr2:62861485-62861705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:238-457
               
               
               Cow position:chr2:29734719-29734945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):54, 184

               
               
               Conread position:238-460
               
               
               Cow position:chr2:77281916-77282149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):54, 70

               
               
               Conread position:241-460
               
               
               Cow position:chr2:48130520-48130750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):80, 186

               
               
               Conread position:242-466
               
               
               Cow position:chr2:40257515-40257277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:244-459
               
               
               Cow position:chr2:55496384-55496168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 51

               
               
               Conread position:244-460
               
               
               Cow position:chr2:387872-387646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):48, 72

               
               
               Conread position:244-460
               
               
               Cow position:chr2:19137991-19137761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:244-466
               
               
               Cow position:chr2:21049413-21049195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):126, 45

               
               
               Conread position:245-451
               
               
               Cow position:chr2:43123241-43123459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 68

               
               
               Conread position:245-466
               
               
               Cow position:chr2:4016936-4016711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):47, 67

               
               
               Conread position:245-469
               
               
               Cow position:chr2:55062789-55063016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):48, 142

               
               
               Conread position:246-459
               
               
               Cow position:chr2:13935613-13935835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:247-459
               
               
               Cow position:chr2:68870599-68870817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 29

               
               
               Conread position:247-466
               
               
               Cow position:chr2:24530278-24530503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 49

               
               
               Conread position:248-458
               
               
               Cow position:chr2:80177677-80177464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):61, 29

               
               
               Conread position:250-460
               
               
               Cow position:chr2:46058102-46057880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 198

               
               
               Conread position:260-460
               
               
               Cow position:chr2:39663292-39663497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 118

               
               
               Conread position:260-460
               
               
               Cow position:chr2:72310087-72309882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):29, 57

               
               
               Conread position:269-457
               
               
               Cow position:chr2:46383538-46383338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 54

               
               
               Conread position:269-460
               
               
               Cow position:chr2:12840116-12839913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:272-446
               
               
               Cow position:chr2:870416-870239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):20, 54

               
               
               Conread position:299-460
               
               
               Cow position:chr2:15219073-15219242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:309-458
               
               
               Cow position:chr2:64773355-64773513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:2-416
               
               
               Cow position:chr20:34001689-34001263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 7

               
               
               Conread position:2-459
               
               
               Cow position:chr20:6240826-6240351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 8

               
               
               Conread position:5-230
               
               
               Cow position:chr20:13790014-13790240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):186, 116

               
               
               Conread position:5-285
               
               
               Cow position:chr20:9411290-9411567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):117, 41

               
               
               Conread position:5-285
               
               
               Cow position:chr20:41119628-41119897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:5-287
               
               
               Cow position:chr20:13493442-13493722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):53, 171

               
               
               Conread position:5-290
               
               
               Cow position:chr20:23679442-23679157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 197

               
               
               Conread position:5-306
               
               
               Cow position:chr20:12334088-12334385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):122, 28

               
               
               Conread position:5-306
               
               
               Cow position:chr20:18399466-18399772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-339
               
               
               Cow position:chr20:24391705-24392021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):186, 52

               
               
               Conread position:5-343
               
               
               Cow position:chr20:27339768-27340109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 112

               
               
               Conread position:5-351
               
               
               Cow position:chr20:15068853-15069194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):123, 57

               
               
               Conread position:5-353
               
               
               Cow position:chr20:3034802-3035162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 63

               
               
               Conread position:5-355
               
               
               Cow position:chr20:5104729-5104392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 112

               
               
               Conread position:5-355
               
               
               Cow position:chr20:17734064-17733720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 41

               
               
               Conread position:5-358
               
               
               Cow position:chr20:24002034-24002377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 54

               
               
               Conread position:5-367
               
               
               Cow position:chr20:17903864-17904229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 63

               
               
               Conread position:5-376
               
               
               Cow position:chr20:19313360-19312988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 83

               
               
               Conread position:5-408
               
               
               Cow position:chr20:8429453-8429866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 70

               
               
               Conread position:5-423
               
               
               Cow position:chr20:35797312-35797743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 10

               
               
               Conread position:5-440
               
               
               Cow position:chr20:10235557-10235982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 225

               
               
               Conread position:5-444
               
               
               Cow position:chr20:33363221-33363672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 178

               
               
               Conread position:5-445
               
               
               Cow position:chr20:9412201-9412644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 110

               
               
               Conread position:5-445
               
               
               Cow position:chr20:9473908-9473475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 41

               
               
               Conread position:5-445
               
               
               Cow position:chr20:9536842-9537288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 60

               
               
               Conread position:5-445
               
               
               Cow position:chr20:12996304-12995850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 201

               
               
               Conread position:5-445
               
               
               Cow position:chr20:22959638-22959192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 30

               
               
               Conread position:5-446
               
               
               Cow position:chr20:18321089-18320637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 55

               
               
               Conread position:5-446
               
               
               Cow position:chr20:40423385-40422946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 276

               
               
               Conread position:5-449
               
               
               Cow position:chr20:19459937-19459505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:303
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):81, 30

               
               
               Conread position:5-450
               
               
               Cow position:chr20:33144848-33144392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 96

               
               
               Conread position:5-452
               
               
               Cow position:chr20:6096780-6096332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 141

               
               
               Conread position:5-453
               
               
               Cow position:chr20:33532015-33532467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 158

               
               
               Conread position:5-457
               
               
               Cow position:chr20:7549963-7550394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 62

               
               
               Conread position:5-459
               
               
               Cow position:chr20:3599687-3599228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 222

               
               
               Conread position:5-459
               
               
               Cow position:chr20:17251416-17251890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 119

               
               
               Conread position:5-460
               
               
               Cow position:chr20:4621635-4621182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 41

               
               
               Conread position:5-460
               
               
               Cow position:chr20:13269334-13269786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 15

               
               
               Conread position:5-460
               
               
               Cow position:chr20:17845659-17846131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 30

               
               
               Conread position:5-460
               
               
               Cow position:chr20:21345107-21345604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:5-460
               
               
               Cow position:chr20:23065132-23064662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 241

               
               
               Conread position:5-460
               
               
               Cow position:chr20:36780025-36779559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 32

               
               
               Conread position:5-463
               
               
               Cow position:chr20:6054800-6054333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 41

               
               
               Conread position:5-465
               
               
               Cow position:chr20:19236796-19237252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 41

               
               
               Conread position:5-465
               
               
               Cow position:chr20:28604919-28605387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:312
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):122, 75

               
               
               Conread position:5-466
               
               
               Cow position:chr20:14806590-14807065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 52

               
               
               Conread position:5-467
               
               
               Cow position:chr20:11550071-11550549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 188

               
               
               Conread position:5-467
               
               
               Cow position:chr20:19751017-19751487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 45

               
               
               Conread position:5-469
               
               
               Cow position:chr20:13877004-13876531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 210

               
               
               Conread position:6-290
               
               
               Cow position:chr20:19410659-19410374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):126, 87

               
               
               Conread position:6-290
               
               
               Cow position:chr20:33170165-33169882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):126, 62

               
               
               Conread position:6-339
               
               
               Cow position:chr20:3781725-3781381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 225

               
               
               Conread position:6-367
               
               
               Cow position:chr20:19146576-19146947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:6-437
               
               
               Cow position:chr20:23792310-23792752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:6-445
               
               
               Cow position:chr20:39398186-39398637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:303
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):76, 116

               
               
               Conread position:6-445
               
               
               Cow position:chr20:40176959-40177401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:300
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):44, 31

               
               
               Conread position:6-453
               
               
               Cow position:chr20:23871109-23870655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:6-457
               
               
               Cow position:chr20:18392533-18392103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 51

               
               
               Conread position:6-458
               
               
               Cow position:chr20:40781683-40782130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 60

               
               
               Conread position:6-460
               
               
               Cow position:chr20:581222-580749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 115

               
               
               Conread position:6-460
               
               
               Cow position:chr20:39415461-39415921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:308
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):188, 32

               
               
               Conread position:6-465
               
               
               Cow position:chr20:28982408-28982879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 54

               
               
               Conread position:6-465
               
               
               Cow position:chr20:35145713-35146195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 460

               
               
               Conread position:6-466
               
               
               Cow position:chr20:20967063-20967500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:316
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):121, 58

               
               
               Conread position:6-474
               
               
               Cow position:chr20:19328108-19328575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 47

               
               
               Conread position:7-357
               
               
               Cow position:chr20:15761240-15760889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 71

               
               
               Conread position:7-452
               
               
               Cow position:chr20:38817723-38818161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 61

               
               
               Conread position:9-335
               
               
               Cow position:chr20:26469369-26469024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:9-450
               
               
               Cow position:chr20:6423674-6424128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 69

               
               
               Conread position:9-466
               
               
               Cow position:chr20:9433311-9433764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 106

               
               
               Conread position:10-453
               
               
               Cow position:chr20:42469478-42469923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):302, 8

               
               
               Conread position:10-460
               
               
               Cow position:chr20:39728161-39728624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 76

               
               
               Conread position:13-290
               
               
               Cow position:chr20:10468787-10469056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:13-453
               
               
               Cow position:chr20:13751959-13752390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 64

               
               
               Conread position:13-460
               
               
               Cow position:chr20:10818515-10818070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:303
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):18, 53

               
               
               Conread position:14-456
               
               
               Cow position:chr20:33435448-33434993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:317
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):114, 54

               
               
               Conread position:14-458
               
               
               Cow position:chr20:26076802-26077252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:307
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):268, 54

               
               
               Conread position:14-466
               
               
               Cow position:chr20:7426475-7426016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:17-288
               
               
               Cow position:chr20:35999405-35999680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:17-443
               
               
               Cow position:chr20:746677-747096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:282
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):209, 69

               
               
               Conread position:17-470
               
               
               Cow position:chr20:34202364-34202818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 298

               
               
               Conread position:21-466
               
               
               Cow position:chr20:12582227-12581774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 152

               
               
               Conread position:24-460
               
               
               Cow position:chr20:13652640-13652196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):49, 120

               
               
               Conread position:25-305
               
               
               Cow position:chr20:32636839-32636561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):103, 23

               
               
               Conread position:25-460
               
               
               Cow position:chr20:21714477-21714939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 50

               
               
               Conread position:26-460
               
               
               Cow position:chr20:21019291-21019733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 144

               
               
               Conread position:30-373
               
               
               Cow position:chr20:35958379-35958724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 75

               
               
               Conread position:31-356
               
               
               Cow position:chr20:31464647-31464318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):97, 37

               
               
               Conread position:33-373
               
               
               Cow position:chr20:13967526-13967180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 153

               
               
               Conread position:34-461
               
               
               Cow position:chr20:7659475-7659057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:290
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):94, 65

               
               
               Conread position:38-356
               
               
               Cow position:chr20:24521489-24521808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 236

               
               
               Conread position:39-465
               
               
               Cow position:chr20:22064812-22065242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 59

               
               
               Conread position:40-457
               
               
               Cow position:chr20:5950889-5950475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):88, 28

               
               
               Conread position:59-445
               
               
               Cow position:chr20:40127577-40127187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):69, 139

               
               
               Conread position:62-448
               
               
               Cow position:chr20:6903091-6903473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):230, 64

               
               
               Conread position:64-354
               
               
               Cow position:chr20:20312973-20312690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):64, 106

               
               
               Conread position:67-343
               
               
               Cow position:chr20:3331527-3331239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:68-446
               
               
               Cow position:chr20:41703922-41704312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:261
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):60, 268

               
               
               Conread position:76-349
               
               
               Cow position:chr20:26679900-26680176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):112, 37

               
               
               Conread position:76-366
               
               
               Cow position:chr20:11923465-11923177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):12, 107

               
               
               Conread position:77-305
               
               
               Cow position:chr20:37200137-37200367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):114, 37

               
               
               Conread position:77-368
               
               
               Cow position:chr20:14735454-14735740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):50, 36

               
               
               Conread position:77-409
               
               
               Cow position:chr20:4205740-4206092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):51, 154

               
               
               Conread position:77-437
               
               
               Cow position:chr20:14759887-14759517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 135

               
               
               Conread position:77-452
               
               
               Cow position:chr20:14572581-14572201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 136

               
               
               Conread position:77-466
               
               
               Cow position:chr20:7442347-7441957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 104

               
               
               Conread position:77-467
               
               
               Cow position:chr20:12420844-12420442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 152

               
               
               Conread position:77-469
               
               
               Cow position:chr20:13829044-13829440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:270
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):51, 26

               
               
               Conread position:78-368
               
               
               Cow position:chr20:22704066-22704366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):49, 152

               
               
               Conread position:78-373
               
               
               Cow position:chr20:35009962-35009661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):50, 23

               
               
               Conread position:78-469
               
               
               Cow position:chr20:34597330-34596919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):50, 123

               
               
               Conread position:78-485
               
               
               Cow position:chr20:29805879-29805464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:290
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):132, 18

               
               
               Conread position:79-438
               
               
               Cow position:chr20:11741524-11741156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):49, 36

               
               
               Conread position:79-448
               
               
               Cow position:chr20:25686572-25686189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):110, 150

               
               
               Conread position:79-450
               
               
               Cow position:chr20:11482360-11481974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):49, 353

               
               
               Conread position:80-445
               
               
               Cow position:chr20:40511977-40511600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:80-460
               
               
               Cow position:chr20:38578976-38578593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 39

               
               
               Conread position:82-373
               
               
               Cow position:chr20:40256752-40257046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):45, 80

               
               
               Conread position:82-453
               
               
               Cow position:chr20:38768671-38768299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 100

               
               
               Conread position:82-459
               
               
               Cow position:chr20:34776968-34777350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 103

               
               
               Conread position:84-437
               
               
               Cow position:chr20:15235548-15235900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:245
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):28, 147

               
               
               Conread position:86-358
               
               
               Cow position:chr20:9379195-9379467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 235

               
               
               Conread position:86-454
               
               
               Cow position:chr20:28296076-28296460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):42, 244

               
               
               Conread position:86-466
               
               
               Cow position:chr20:14879572-14879968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:271
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):28, 94

               
               
               Conread position:88-318
               
               
               Cow position:chr20:6848410-6848647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):129, 171

               
               
               Conread position:89-358
               
               
               Cow position:chr20:32069069-32068790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):6, 237

               
               
               Conread position:89-452
               
               
               Cow position:chr20:35907257-35906887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):43, 24

               
               
               Conread position:90-443
               
               
               Cow position:chr20:20983797-20984146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):38, 74

               
               
               Conread position:90-445
               
               
               Cow position:chr20:34251888-34251516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:250
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):38, 80

               
               
               Conread position:90-460
               
               
               Cow position:chr20:9923387-9923738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):37, 75

               
               
               Conread position:91-303
               
               
               Cow position:chr20:33176973-33177196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:91-370
               
               
               Cow position:chr20:34918070-34918344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):42, 90

               
               
               Conread position:91-447
               
               
               Cow position:chr20:15593087-15593444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 149

               
               
               Conread position:93-469
               
               
               Cow position:chr20:38551167-38551546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 69

               
               
               Conread position:97-460
               
               
               Cow position:chr20:15566034-15565656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:263
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):36, 222

               
               
               Conread position:102-297
               
               
               Cow position:chr20:11043695-11043505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 79

               
               
               Conread position:104-469
               
               
               Cow position:chr20:34098154-34097771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:265
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):23, 122

               
               
               Conread position:105-453
               
               
               Cow position:chr20:21928710-21929069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:245
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:105-459
               
               
               Cow position:chr20:23846867-23846494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):23, 102

               
               
               Conread position:107-440
               
               
               Cow position:chr20:11542476-11542136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):20, 92

               
               
               Conread position:107-466
               
               
               Cow position:chr20:6602848-6603215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):20, 81

               
               
               Conread position:108-465
               
               
               Cow position:chr20:12239872-12239505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):20, 129

               
               
               Conread position:109-460
               
               
               Cow position:chr20:13994618-13994987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):18, 270

               
               
               Conread position:113-370
               
               
               Cow position:chr20:28831780-28832045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):52, 11

               
               
               Conread position:118-367
               
               
               Cow position:chr20:11864318-11864063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 205

               
               
               Conread position:127-457
               
               
               Cow position:chr20:3321310-3320976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:245
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):87, 64

               
               
               Conread position:130-447
               
               
               Cow position:chr20:31080875-31081196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:130-448
               
               
               Cow position:chr20:34107947-34108265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):165, 14

               
               
               Conread position:130-466
               
               
               Cow position:chr20:14980684-14980325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):61, 99

               
               
               Conread position:132-453
               
               
               Cow position:chr20:5814401-5814730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):7, 128

               
               
               Conread position:132-459
               
               
               Cow position:chr20:14100605-14100263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):59, 29

               
               
               Conread position:135-358
               
               
               Cow position:chr20:37272549-37272776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 8

               
               
               Conread position:135-445
               
               
               Cow position:chr20:31323634-31323943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):177, 74

               
               
               Conread position:142-460
               
               
               Cow position:chr20:40446178-40446501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):99, 22

               
               
               Conread position:143-460
               
               
               Cow position:chr20:15569106-15568778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):48, 168

               
               
               Conread position:144-455
               
               
               Cow position:chr20:5636325-5636649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):47, 85

               
               
               Conread position:145-460
               
               
               Cow position:chr20:21761622-21761944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):81, 111

               
               
               Conread position:146-452
               
               
               Cow position:chr20:13025761-13025443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):166, 18

               
               
               Conread position:151-393
               
               
               Cow position:chr20:18500071-18500307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):108, 25

               
               
               Conread position:152-456
               
               
               Cow position:chr20:4334667-4334362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):217, 38

               
               
               Conread position:155-458
               
               
               Cow position:chr20:34221336-34221646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):85, 99

               
               
               Conread position:159-467
               
               
               Cow position:chr20:14433568-14433243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):72, 283

               
               
               Conread position:164-460
               
               
               Cow position:chr20:9267236-9266936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):27, 70

               
               
               Conread position:164-460
               
               
               Cow position:chr20:22484725-22485030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):69, 155

               
               
               Conread position:171-460
               
               
               Cow position:chr20:41089918-41089624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):129, 55

               
               
               Conread position:174-460
               
               
               Cow position:chr20:36633692-36633983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):67, 149

               
               
               Conread position:186-458
               
               
               Cow position:chr20:11188918-11188638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 136

               
               
               Conread position:190-419
               
               
               Cow position:chr20:24000908-24000666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:191-437
               
               
               Cow position:chr20:36040363-36040623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):39, 21

               
               
               Conread position:197-459
               
               
               Cow position:chr20:24833992-24834260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):98, 28

               
               
               Conread position:197-460
               
               
               Cow position:chr20:20099700-20099428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):13, 144

               
               
               Conread position:199-446
               
               
               Cow position:chr20:28594183-28594444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):93, 35

               
               
               Conread position:212-469
               
               
               Cow position:chr20:24711748-24712021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:213-460
               
               
               Cow position:chr20:13983277-13983528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):97, 25

               
               
               Conread position:213-460
               
               
               Cow position:chr20:41883650-41883901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):79, 12

               
               
               Conread position:216-460
               
               
               Cow position:chr20:36741393-36741634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):83, 9

               
               
               Conread position:218-459
               
               
               Cow position:chr20:5576135-5576376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):33, 161

               
               
               Conread position:220-490
               
               
               Cow position:chr20:33439058-33438779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):7, 72

               
               
               Conread position:224-456
               
               
               Cow position:chr20:5078548-5078794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:225-444
               
               
               Cow position:chr20:16491997-16492228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:227-460
               
               
               Cow position:chr20:16548350-16548106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):65, 90

               
               
               Conread position:238-457
               
               
               Cow position:chr20:11008109-11008338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:238-459
               
               
               Cow position:chr20:354958-354727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):54, 78

               
               
               Conread position:238-460
               
               
               Cow position:chr20:12085486-12085266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):137, 57

               
               
               Conread position:244-431
               
               
               Cow position:chr20:23506525-23506327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):48, 75

               
               
               Conread position:244-452
               
               
               Cow position:chr20:30119629-30119414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):37, 177

               
               
               Conread position:246-445
               
               
               Cow position:chr20:10772150-10772363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:246-460
               
               
               Cow position:chr20:20056538-20056315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):46, 67

               
               
               Conread position:246-466
               
               
               Cow position:chr20:9376415-9376645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):46, 206

               
               
               Conread position:260-460
               
               
               Cow position:chr20:21428120-21428330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):34, 170

               
               
               Conread position:260-466
               
               
               Cow position:chr20:11359669-11359452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):32, 57

               
               
               Conread position:261-460
               
               
               Cow position:chr20:40157862-40158071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 56

               
               
               Conread position:280-467
               
               
               Cow position:chr20:5364911-5365106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:317-460
               
               
               Cow position:chr20:13943785-13943931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:2-306
               
               
               Cow position:chr21:48484716-48484417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):238, 7

               
               
               Conread position:2-452
               
               
               Cow position:chr21:25382722-25383210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 7

               
               
               Conread position:2-466
               
               
               Cow position:chr21:11645261-11644763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 6

               
               
               Conread position:2-467
               
               
               Cow position:chr21:28734188-28733712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 12

               
               
               Conread position:2-484
               
               
               Cow position:chr21:25764358-25764850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:328
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):18, 7

               
               
               Conread position:3-466
               
               
               Cow position:chr21:5898671-5898205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 43

               
               
               Conread position:4-356
               
               
               Cow position:chr21:1463958-1464310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 86

               
               
               Conread position:4-445
               
               
               Cow position:chr21:22719055-22718607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 66

               
               
               Conread position:4-482
               
               
               Cow position:chr21:23801395-23800915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:321
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 32

               
               
               Conread position:5-230
               
               
               Cow position:chr21:20045041-20044822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 54

               
               
               Conread position:5-231
               
               
               Cow position:chr21:18713012-18713236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):123, 81

               
               
               Conread position:5-275
               
               
               Cow position:chr21:24130812-24131077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):123, 19

               
               
               Conread position:5-287
               
               
               Cow position:chr21:28477351-28477632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 98

               
               
               Conread position:5-289
               
               
               Cow position:chr21:34738324-34738620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):122, 206

               
               
               Conread position:5-290
               
               
               Cow position:chr21:23683276-23683559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 167

               
               
               Conread position:5-311
               
               
               Cow position:chr21:24796308-24796003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):122, 47

               
               
               Conread position:5-330
               
               
               Cow position:chr21:40058531-40058861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 113

               
               
               Conread position:5-349
               
               
               Cow position:chr21:28881875-28882210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:253
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):123, 68

               
               
               Conread position:5-353
               
               
               Cow position:chr21:36793608-36793972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):108, 239

               
               
               Conread position:5-354
               
               
               Cow position:chr21:12961187-12960820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:252
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):83, 123

               
               
               Conread position:5-356
               
               
               Cow position:chr21:8985275-8985632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 206

               
               
               Conread position:5-357
               
               
               Cow position:chr21:10071203-10070852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):113, 151

               
               
               Conread position:5-358
               
               
               Cow position:chr21:5137781-5137405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):61, 352

               
               
               Conread position:5-358
               
               
               Cow position:chr21:26829509-26829181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):123, 61

               
               
               Conread position:5-368
               
               
               Cow position:chr21:47802536-47802167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 225

               
               
               Conread position:5-370
               
               
               Cow position:chr21:20925779-20925411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:5-373
               
               
               Cow position:chr21:32535704-32536074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 48

               
               
               Conread position:5-373
               
               
               Cow position:chr21:36756341-36756697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):91, 43

               
               
               Conread position:5-373
               
               
               Cow position:chr21:39889018-39888652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 171

               
               
               Conread position:5-388
               
               
               Cow position:chr21:3813741-3813370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 65

               
               
               Conread position:5-400
               
               
               Cow position:chr21:33997499-33997095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:284
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):45, 30

               
               
               Conread position:5-411
               
               
               Cow position:chr21:4794947-4795363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:281
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):36, 225

               
               
               Conread position:5-416
               
               
               Cow position:chr21:34391240-34390827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 30

               
               
               Conread position:5-416
               
               
               Cow position:chr21:43357535-43357108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 114

               
               
               Conread position:5-425
               
               
               Cow position:chr21:4998759-4998338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:5-436
               
               
               Cow position:chr21:2679285-2679716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 59

               
               
               Conread position:5-436
               
               
               Cow position:chr21:19766580-19767021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 290

               
               
               Conread position:5-444
               
               
               Cow position:chr21:16696096-16696549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 123

               
               
               Conread position:5-445
               
               
               Cow position:chr21:15584673-15584242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 41

               
               
               Conread position:5-446
               
               
               Cow position:chr21:28429176-28429622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 57

               
               
               Conread position:5-446
               
               
               Cow position:chr21:32297776-32297341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 109

               
               
               Conread position:5-446
               
               
               Cow position:chr21:44671479-44671922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 225

               
               
               Conread position:5-450
               
               
               Cow position:chr21:395604-396049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 80

               
               
               Conread position:5-451
               
               
               Cow position:chr21:29069602-29069143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:5-452
               
               
               Cow position:chr21:27230066-27229611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 70

               
               
               Conread position:5-453
               
               
               Cow position:chr21:46263903-46264355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 60

               
               
               Conread position:5-455
               
               
               Cow position:chr21:28810523-28810075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:297
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):123, 61

               
               
               Conread position:5-456
               
               
               Cow position:chr21:7672859-7673308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:302
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 110

               
               
               Conread position:5-456
               
               
               Cow position:chr21:31691207-31691670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 77

               
               
               Conread position:5-457
               
               
               Cow position:chr21:5392812-5392346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 70

               
               
               Conread position:5-458
               
               
               Cow position:chr21:26648278-26647826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 99

               
               
               Conread position:5-458
               
               
               Cow position:chr21:30849218-30848751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:323
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):53, 41

               
               
               Conread position:5-458
               
               
               Cow position:chr21:30990542-30990097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 108

               
               
               Conread position:5-458
               
               
               Cow position:chr21:41974653-41974188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 225

               
               
               Conread position:5-459
               
               
               Cow position:chr21:6833778-6834242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 175

               
               
               Conread position:5-459
               
               
               Cow position:chr21:9415969-9416442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:5-459
               
               
               Cow position:chr21:17643237-17642795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:325
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):162, 78

               
               
               Conread position:5-459
               
               
               Cow position:chr21:18568923-18568445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 64

               
               
               Conread position:5-459
               
               
               Cow position:chr21:24858037-24858508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 225

               
               
               Conread position:5-459
               
               
               Cow position:chr21:33562740-33563196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 96

               
               
               Conread position:5-460
               
               
               Cow position:chr21:937778-938211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:314
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):295, 63

               
               
               Conread position:5-461
               
               
               Cow position:chr21:23672472-23672938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 80

               
               
               Conread position:5-465
               
               
               Cow position:chr21:3236258-3236705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:312
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):287, 121

               
               
               Conread position:5-466
               
               
               Cow position:chr21:641310-641787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 151

               
               
               Conread position:5-466
               
               
               Cow position:chr21:4282138-4281680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 60

               
               
               Conread position:5-466
               
               
               Cow position:chr21:14760311-14760763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 25

               
               
               Conread position:5-466
               
               
               Cow position:chr21:33983084-33982611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 226

               
               
               Conread position:5-466
               
               
               Cow position:chr21:34653813-34654273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 27

               
               
               Conread position:5-467
               
               
               Cow position:chr21:28923868-28924309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 64

               
               
               Conread position:5-477
               
               
               Cow position:chr21:38120829-38121313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 191

               
               
               Conread position:5-488
               
               
               Cow position:chr21:32237026-32237502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 30

               
               
               Conread position:6-256
               
               
               Cow position:chr21:34254553-34254302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):122, 47

               
               
               Conread position:6-287
               
               
               Cow position:chr21:363382-363658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):122, 142

               
               
               Conread position:6-290
               
               
               Cow position:chr21:7564595-7564306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 191

               
               
               Conread position:6-290
               
               
               Cow position:chr21:28512268-28512540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):122, 40

               
               
               Conread position:6-290
               
               
               Cow position:chr21:41957447-41957165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 164

               
               
               Conread position:6-292
               
               
               Cow position:chr21:27336549-27336840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:6-337
               
               
               Cow position:chr21:18494705-18495031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):121, 40

               
               
               Conread position:6-354
               
               
               Cow position:chr21:42914019-42913665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 234

               
               
               Conread position:6-356
               
               
               Cow position:chr21:28617329-28617671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):221, 62

               
               
               Conread position:6-357
               
               
               Cow position:chr21:36163236-36162878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:6-368
               
               
               Cow position:chr21:6764975-6764608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 146

               
               
               Conread position:6-398
               
               
               Cow position:chr21:40786398-40786807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 25

               
               
               Conread position:6-406
               
               
               Cow position:chr21:4905240-4904829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:281
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):186, 95

               
               
               Conread position:6-414
               
               
               Cow position:chr21:4080081-4080494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 116

               
               
               Conread position:6-416
               
               
               Cow position:chr21:30607376-30606938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:302
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):67, 214

               
               
               Conread position:6-423
               
               
               Cow position:chr21:39401327-39401745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 108

               
               
               Conread position:6-436
               
               
               Cow position:chr21:36642634-36643064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 196

               
               
               Conread position:6-445
               
               
               Cow position:chr21:5566718-5567163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:308
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):122, 82

               
               
               Conread position:6-445
               
               
               Cow position:chr21:7582178-7581728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 87

               
               
               Conread position:6-453
               
               
               Cow position:chr21:643064-643509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 93

               
               
               Conread position:6-457
               
               
               Cow position:chr21:44565978-44565533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:305
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):73, 163

               
               
               Conread position:6-459
               
               
               Cow position:chr21:10514539-10514994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:315
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):122, 69

               
               
               Conread position:6-460
               
               
               Cow position:chr21:42384235-42384701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 62

               
               
               Conread position:6-465
               
               
               Cow position:chr21:12153860-12154327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 231

               
               
               Conread position:6-466
               
               
               Cow position:chr21:46849392-46848930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 48

               
               
               Conread position:6-469
               
               
               Cow position:chr21:25344605-25345062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 109

               
               
               Conread position:6-484
               
               
               Cow position:chr21:33209926-33210407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 60

               
               
               Conread position:9-281
               
               
               Cow position:chr21:13751117-13751389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 61

               
               
               Conread position:9-288
               
               
               Cow position:chr21:42023865-42024131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):119, 75

               
               
               Conread position:9-290
               
               
               Cow position:chr21:17434590-17434307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 62

               
               
               Conread position:9-290
               
               
               Cow position:chr21:17475550-17475832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):40, 60

               
               
               Conread position:9-290
               
               
               Cow position:chr21:21967212-21967483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):125, 96

               
               
               Conread position:9-309
               
               
               Cow position:chr21:18934653-18934951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):287, 177

               
               
               Conread position:9-318
               
               
               Cow position:chr21:17714043-17714359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):125, 221

               
               
               Conread position:9-440
               
               
               Cow position:chr21:45915974-45915546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 153

               
               
               Conread position:9-443
               
               
               Cow position:chr21:42414369-42413922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 59

               
               
               Conread position:9-445
               
               
               Cow position:chr21:27341860-27341418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 37

               
               
               Conread position:9-450
               
               
               Cow position:chr21:5153347-5153802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 281

               
               
               Conread position:9-460
               
               
               Cow position:chr21:36795330-36795795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 185

               
               
               Conread position:9-465
               
               
               Cow position:chr21:81800-82266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 226

               
               
               Conread position:9-469
               
               
               Cow position:chr21:20160414-20160877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 104

               
               
               Conread position:13-289
               
               
               Cow position:chr21:13703952-13703674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):62, 14

               
               
               Conread position:13-458
               
               
               Cow position:chr21:15976375-15976822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 47

               
               
               Conread position:14-356
               
               
               Cow position:chr21:5455251-5454911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):65, 109

               
               
               Conread position:14-357
               
               
               Cow position:chr21:45866671-45867015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):177, 114

               
               
               Conread position:16-442
               
               
               Cow position:chr21:36819486-36819059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:302
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):71, 136

               
               
               Conread position:17-450
               
               
               Cow position:chr21:44252090-44251661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):64, 176

               
               
               Conread position:17-471
               
               
               Cow position:chr21:3585618-3585166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 80

               
               
               Conread position:23-457
               
               
               Cow position:chr21:49700293-49699851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 301

               
               
               Conread position:25-339
               
               
               Cow position:chr21:912218-911903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):60, 34

               
               
               Conread position:25-460
               
               
               Cow position:chr21:13128351-13127907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 105

               
               
               Conread position:26-459
               
               
               Cow position:chr21:6713791-6713332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:304
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):101, 151

               
               
               Conread position:26-466
               
               
               Cow position:chr21:39403791-39403325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 87

               
               
               Conread position:26-475
               
               
               Cow position:chr21:44826128-44825676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:309
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):299, 31

               
               
               Conread position:29-453
               
               
               Cow position:chr21:38900523-38900959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 202

               
               
               Conread position:30-457
               
               
               Cow position:chr21:23322330-23321889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 94

               
               
               Conread position:36-414
               
               
               Cow position:chr21:40899093-40899485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:269
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):91, 205

               
               
               Conread position:37-356
               
               
               Cow position:chr21:5636963-5636643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 143

               
               
               Conread position:46-230
               
               
               Cow position:chr21:28919856-28919670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:46-483
               
               
               Cow position:chr21:33489-33936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:298
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):9, 21

               
               
               Conread position:48-407
               
               
               Cow position:chr21:27124359-27123982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:266
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):60, 122

               
               
               Conread position:48-426
               
               
               Cow position:chr21:41878245-41878627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):80, 101

               
               
               Conread position:48-469
               
               
               Cow position:chr21:15445310-15444884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 285

               
               
               Conread position:50-366
               
               
               Cow position:chr21:8351530-8351221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:229
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):124, 27

               
               
               Conread position:52-466
               
               
               Cow position:chr21:45330169-45329751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:54-460
               
               
               Cow position:chr21:45473984-45473567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 230

               
               
               Conread position:57-449
               
               
               Cow position:chr21:28626019-28626418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 76

               
               
               Conread position:62-351
               
               
               Cow position:chr21:31676285-31676574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):66, 20

               
               
               Conread position:62-449
               
               
               Cow position:chr21:31662243-31662648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):66, 166

               
               
               Conread position:62-458
               
               
               Cow position:chr21:30592515-30592117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:64-431
               
               
               Cow position:chr21:21982591-21982967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):64, 163

               
               
               Conread position:66-466
               
               
               Cow position:chr21:23535500-23535907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:275
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):37, 101

               
               
               Conread position:74-459
               
               
               Cow position:chr21:19258621-19259008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 208

               
               
               Conread position:75-460
               
               
               Cow position:chr21:41597611-41598003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 225

               
               
               Conread position:76-452
               
               
               Cow position:chr21:40589685-40589298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:269
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:77-231
               
               
               Cow position:chr21:46132180-46132025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:77-287
               
               
               Cow position:chr21:34835625-34835426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:77-290
               
               
               Cow position:chr21:29002364-29002147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):55, 153

               
               
               Conread position:77-419
               
               
               Cow position:chr21:45330810-45330456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):51, 237

               
               
               Conread position:77-435
               
               
               Cow position:chr21:28955320-28955668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):51, 92

               
               
               Conread position:77-447
               
               
               Cow position:chr21:45355634-45356012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):51, 179

               
               
               Conread position:77-453
               
               
               Cow position:chr21:1058875-1059261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:77-460
               
               
               Cow position:chr21:27569360-27568978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):51, 40

               
               
               Conread position:77-467
               
               
               Cow position:chr21:6051304-6051702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 150

               
               
               Conread position:77-486
               
               
               Cow position:chr21:12801946-12801529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:283
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):171, 47

               
               
               Conread position:78-289
               
               
               Cow position:chr21:24094945-24094738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):50, 82

               
               
               Conread position:78-305
               
               
               Cow position:chr21:37361675-37361447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):18, 110

               
               
               Conread position:78-443
               
               
               Cow position:chr21:41620918-41621300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):50, 166

               
               
               Conread position:78-445
               
               
               Cow position:chr21:2927404-2927028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):113, 43

               
               
               Conread position:78-458
               
               
               Cow position:chr21:29484783-29485168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:78-459
               
               
               Cow position:chr21:3818015-3818399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):50, 92

               
               
               Conread position:78-459
               
               
               Cow position:chr21:27521526-27521149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 46

               
               
               Conread position:79-488
               
               
               Cow position:chr21:26244734-26245134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:276
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):49, 12

               
               
               Conread position:80-440
               
               
               Cow position:chr21:18940756-18940408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):217, 35

               
               
               Conread position:80-460
               
               
               Cow position:chr21:13738372-13738744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 37

               
               
               Conread position:82-374
               
               
               Cow position:chr21:30150466-30150165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:82-438
               
               
               Cow position:chr21:18845212-18844843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):96, 44

               
               
               Conread position:82-460
               
               
               Cow position:chr21:13585255-13584869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:266
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):46, 35

               
               
               Conread position:83-466
               
               
               Cow position:chr21:42135820-42135416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:274
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):45, 147

               
               
               Conread position:84-290
               
               
               Cow position:chr21:9998916-9998706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:84-466
               
               
               Cow position:chr21:23568013-23568428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):44, 119

               
               
               Conread position:85-356
               
               
               Cow position:chr21:31277627-31277890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):132, 48

               
               
               Conread position:85-419
               
               
               Cow position:chr21:1591357-1591705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):81, 32

               
               
               Conread position:85-460
               
               
               Cow position:chr21:31253341-31253725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:266
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):29, 235

               
               
               Conread position:85-460
               
               
               Cow position:chr21:42841785-42841405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):47, 29

               
               
               Conread position:86-466
               
               
               Cow position:chr21:38449645-38449249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:87-448
               
               
               Cow position:chr21:45850902-45850525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:87-463
               
               
               Cow position:chr21:17193952-17193554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:273
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):45, 123

               
               
               Conread position:88-291
               
               
               Cow position:chr21:40065506-40065302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):20, 75

               
               
               Conread position:88-446
               
               
               Cow position:chr21:5426755-5427115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:259
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):143, 37

               
               
               Conread position:88-458
               
               
               Cow position:chr21:32559545-32559175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:264
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):40, 74

               
               
               Conread position:89-440
               
               
               Cow position:chr21:33791558-33791210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:248
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):38, 87

               
               
               Conread position:89-459
               
               
               Cow position:chr21:13365151-13365535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 96

               
               
               Conread position:90-475
               
               
               Cow position:chr21:47764301-47763911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 25

               
               
               Conread position:91-373
               
               
               Cow position:chr21:6102457-6102164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):22, 133

               
               
               Conread position:91-466
               
               
               Cow position:chr21:47465309-47464916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:262
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):36, 75

               
               
               Conread position:92-449
               
               
               Cow position:chr21:15610967-15611320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):7, 23

               
               
               Conread position:94-459
               
               
               Cow position:chr21:9990329-9990703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):34, 49

               
               
               Conread position:95-454
               
               
               Cow position:chr21:28190844-28191218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):33, 135

               
               
               Conread position:96-424
               
               
               Cow position:chr21:17174957-17175291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):14, 230

               
               
               Conread position:96-451
               
               
               Cow position:chr21:37345285-37344918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 243

               
               
               Conread position:97-398
               
               
               Cow position:chr21:13488337-13488657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 132

               
               
               Conread position:97-440
               
               
               Cow position:chr21:15911218-15911572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 83

               
               
               Conread position:99-472
               
               
               Cow position:chr21:17183741-17184121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:262
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):15, 36

               
               
               Conread position:102-460
               
               
               Cow position:chr21:18790733-18790374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 74

               
               
               Conread position:104-469
               
               
               Cow position:chr21:32339912-32339539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 68

               
               
               Conread position:107-459
               
               
               Cow position:chr21:21169667-21169301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):21, 108

               
               
               Conread position:110-356
               
               
               Cow position:chr21:41455122-41454868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):12, 132

               
               
               Conread position:111-452
               
               
               Cow position:chr21:10000912-10001259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:249
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):17, 43

               
               
               Conread position:115-453
               
               
               Cow position:chr21:27624548-27624883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 25

               
               
               Conread position:118-453
               
               
               Cow position:chr21:10114490-10114148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 86

               
               
               Conread position:118-466
               
               
               Cow position:chr21:30222183-30222545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):69, 25

               
               
               Conread position:120-459
               
               
               Cow position:chr21:41590716-41590374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 71

               
               
               Conread position:130-398
               
               
               Cow position:chr21:13840174-13840456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):67, 29

               
               
               Conread position:130-460
               
               
               Cow position:chr21:10633789-10633449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 303

               
               
               Conread position:130-460
               
               
               Cow position:chr21:45921207-45920867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):82, 115

               
               
               Conread position:132-459
               
               
               Cow position:chr21:18041989-18041676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):164, 37

               
               
               Conread position:132-459
               
               
               Cow position:chr21:24642372-24642703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):10, 40

               
               
               Conread position:132-460
               
               
               Cow position:chr21:10005032-10004692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 88

               
               
               Conread position:133-459
               
               
               Cow position:chr21:957521-957861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):5, 124

               
               
               Conread position:134-442
               
               
               Cow position:chr21:8235689-8235388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):158, 67

               
               
               Conread position:135-460
               
               
               Cow position:chr21:42007603-42007270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:245
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):98, 39

               
               
               Conread position:135-466
               
               
               Cow position:chr21:29978907-29978561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):8, 98

               
               
               Conread position:138-415
               
               
               Cow position:chr21:11250725-11251016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):53, 169

               
               
               Conread position:141-460
               
               
               Cow position:chr21:11359900-11360218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):50, 95

               
               
               Conread position:141-467
               
               
               Cow position:chr21:20152810-20153155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):72, 65

               
               
               Conread position:142-448
               
               
               Cow position:chr21:12723020-12723330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):48, 96

               
               
               Conread position:142-460
               
               
               Cow position:chr21:14452101-14452426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):168, 11

               
               
               Conread position:143-429
               
               
               Cow position:chr21:20418825-20418521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:143-450
               
               
               Cow position:chr21:20260456-20260126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):147, 82

               
               
               Conread position:143-466
               
               
               Cow position:chr21:12462106-12461767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):28, 83

               
               
               Conread position:147-460
               
               
               Cow position:chr21:10538394-10538063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):23, 45

               
               
               Conread position:148-446
               
               
               Cow position:chr21:34151450-34151759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):85, 288

               
               
               Conread position:169-420
               
               
               Cow position:chr21:18414941-18415203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):63, 168

               
               
               Conread position:170-453
               
               
               Cow position:chr21:10673023-10673306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):197, 39

               
               
               Conread position:171-368
               
               
               Cow position:chr21:34722893-34722696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):129, 74

               
               
               Conread position:171-443
               
               
               Cow position:chr21:23980289-23980007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 38

               
               
               Conread position:181-452
               
               
               Cow position:chr21:8206675-8206954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):111, 61

               
               
               Conread position:181-479
               
               
               Cow position:chr21:45262909-45262598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):74, 44

               
               
               Conread position:186-447
               
               
               Cow position:chr21:30835270-30835544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):106, 175

               
               
               Conread position:186-460
               
               
               Cow position:chr21:6997846-6998140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:190-453
               
               
               Cow position:chr21:10410130-10410407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:191-456
               
               
               Cow position:chr21:22210331-22210057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):101, 47

               
               
               Conread position:197-469
               
               
               Cow position:chr21:37014484-37014227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):93, 109

               
               
               Conread position:199-486
               
               
               Cow position:chr21:30256350-30256054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 84

               
               
               Conread position:212-394
               
               
               Cow position:chr21:33360100-33359917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):82, 161

               
               
               Conread position:212-466
               
               
               Cow position:chr21:1511225-1511489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):79, 21

               
               
               Conread position:212-466
               
               
               Cow position:chr21:7394315-7394575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):80, 196

               
               
               Conread position:213-457
               
               
               Cow position:chr21:15544283-15544041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:189
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:213-460
               
               
               Cow position:chr21:36909869-36910125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):156, 100

               
               
               Conread position:213-460
               
               
               Cow position:chr21:40266056-40266313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):15, 223

               
               
               Conread position:214-466
               
               
               Cow position:chr21:47363808-47363535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:222-459
               
               
               Cow position:chr21:43259166-43259410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):71, 91

               
               
               Conread position:225-452
               
               
               Cow position:chr21:47714057-47713826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):67, 29

               
               
               Conread position:225-453
               
               
               Cow position:chr21:868979-868738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:225-459
               
               
               Cow position:chr21:17890249-17890495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:241-466
               
               
               Cow position:chr21:21907467-21907239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):53, 107

               
               
               Conread position:244-436
               
               
               Cow position:chr21:42209666-42209461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:245-445
               
               
               Cow position:chr21:734562-734766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):52, 72

               
               
               Conread position:245-452
               
               
               Cow position:chr21:44861145-44860934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):59, 35

               
               
               Conread position:254-453
               
               
               Cow position:chr21:38720227-38720434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:260-460
               
               
               Cow position:chr21:31159384-31159589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):32, 57

               
               
               Conread position:261-449
               
               
               Cow position:chr21:17062919-17063102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):107, 15

               
               
               Conread position:270-466
               
               
               Cow position:chr21:7768425-7768638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:279-458
               
               
               Cow position:chr21:36508241-36508424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:279-460
               
               
               Cow position:chr21:8546018-8545831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:287-466
               
               
               Cow position:chr21:31279269-31279456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):83, 29

               
               
               Conread position:293-460
               
               
               Cow position:chr21:42463672-42463502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:324-461
               
               
               Cow position:chr21:8213230-8213088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:325-466
               
               
               Cow position:chr21:42562681-42562822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):45, 16

               
               
               Conread position:2-233
               
               
               Cow position:chr22:28120448-28120683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 7

               
               
               Conread position:2-457
               
               
               Cow position:chr22:10631032-10631510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 7

               
               
               Conread position:2-459
               
               
               Cow position:chr22:23805324-23804855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:312
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):106, 7

               
               
               Conread position:2-460
               
               
               Cow position:chr22:16620836-16621306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 8

               
               
               Conread position:3-458
               
               
               Cow position:chr22:8882676-8883134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 43

               
               
               Conread position:5-229
               
               
               Cow position:chr22:26759829-26760053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:5-259
               
               
               Cow position:chr22:13720874-13720610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):83, 214

               
               
               Conread position:5-285
               
               
               Cow position:chr22:26097951-26097681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):123, 57

               
               
               Conread position:5-290
               
               
               Cow position:chr22:9734518-9734798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-290
               
               
               Cow position:chr22:30472706-30472990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 9

               
               
               Conread position:5-290
               
               
               Cow position:chr22:39516842-39517127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):122, 167

               
               
               Conread position:5-306
               
               
               Cow position:chr22:5467709-5467404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 91

               
               
               Conread position:5-354
               
               
               Cow position:chr22:30710064-30710414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):189, 86

               
               
               Conread position:5-368
               
               
               Cow position:chr22:6610690-6610325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:251
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):122, 41

               
               
               Conread position:5-368
               
               
               Cow position:chr22:19340859-19341226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 112

               
               
               Conread position:5-372
               
               
               Cow position:chr22:41045255-41044881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 318

               
               
               Conread position:5-415
               
               
               Cow position:chr22:7153541-7153961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 97

               
               
               Conread position:5-420
               
               
               Cow position:chr22:43292243-43291817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 309

               
               
               Conread position:5-435
               
               
               Cow position:chr22:10937173-10936751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:5-437
               
               
               Cow position:chr22:1289848-1289427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:288
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):122, 77

               
               
               Conread position:5-444
               
               
               Cow position:chr22:590007-590448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 81

               
               
               Conread position:5-445
               
               
               Cow position:chr22:1310068-1309624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 108

               
               
               Conread position:5-445
               
               
               Cow position:chr22:18196167-18196619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 136

               
               
               Conread position:5-445
               
               
               Cow position:chr22:26316138-26316566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 94

               
               
               Conread position:5-445
               
               
               Cow position:chr22:34615971-34616416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:308
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):123, 70

               
               
               Conread position:5-446
               
               
               Cow position:chr22:3987171-3987629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):122, 316

               
               
               Conread position:5-448
               
               
               Cow position:chr22:26184501-26184048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 108

               
               
               Conread position:5-451
               
               
               Cow position:chr22:30483578-30484031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:5-452
               
               
               Cow position:chr22:14366295-14365842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 225

               
               
               Conread position:5-452
               
               
               Cow position:chr22:14925061-14924613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 50

               
               
               Conread position:5-452
               
               
               Cow position:chr22:25743308-25742832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 235

               
               
               Conread position:5-453
               
               
               Cow position:chr22:3842286-3842735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 25

               
               
               Conread position:5-453
               
               
               Cow position:chr22:25943140-25943593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 176

               
               
               Conread position:5-454
               
               
               Cow position:chr22:10685419-10684972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 15

               
               
               Conread position:5-454
               
               
               Cow position:chr22:46568230-46567776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):122, 205

               
               
               Conread position:5-456
               
               
               Cow position:chr22:27321982-27322431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 49

               
               
               Conread position:5-457
               
               
               Cow position:chr22:18258887-18259340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 177

               
               
               Conread position:5-458
               
               
               Cow position:chr22:10294711-10295158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:302
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 65

               
               
               Conread position:5-458
               
               
               Cow position:chr22:23980560-23980083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:300
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):111, 253

               
               
               Conread position:5-459
               
               
               Cow position:chr22:27171596-27171138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 72

               
               
               Conread position:5-459
               
               
               Cow position:chr22:34726333-34726791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 109

               
               
               Conread position:5-460
               
               
               Cow position:chr22:877182-877640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 108

               
               
               Conread position:5-460
               
               
               Cow position:chr22:4076239-4075761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-460
               
               
               Cow position:chr22:4119909-4119437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:5-460
               
               
               Cow position:chr22:6622586-6622124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 108

               
               
               Conread position:5-460
               
               
               Cow position:chr22:6754592-6754141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:310
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):107, 77

               
               
               Conread position:5-460
               
               
               Cow position:chr22:8323906-8324362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:5-460
               
               
               Cow position:chr22:10339465-10338994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 120

               
               
               Conread position:5-460
               
               
               Cow position:chr22:11613087-11613553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 109

               
               
               Conread position:5-460
               
               
               Cow position:chr22:13840803-13841263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:5-460
               
               
               Cow position:chr22:16044770-16044291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:5-460
               
               
               Cow position:chr22:21296064-21295600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:5-460
               
               
               Cow position:chr22:31194749-31195180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:309
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):108, 55

               
               
               Conread position:5-460
               
               
               Cow position:chr22:33448427-33447954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 180

               
               
               Conread position:5-460
               
               
               Cow position:chr22:40121203-40120756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 63

               
               
               Conread position:5-463
               
               
               Cow position:chr22:10532155-10532626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 110

               
               
               Conread position:5-465
               
               
               Cow position:chr22:12572858-12573336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 230

               
               
               Conread position:5-466
               
               
               Cow position:chr22:11130535-11131005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 32

               
               
               Conread position:5-467
               
               
               Cow position:chr22:21890700-21890228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 108

               
               
               Conread position:5-469
               
               
               Cow position:chr22:1068256-1067782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-470
               
               
               Cow position:chr22:8412183-8412666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 225

               
               
               Conread position:6-290
               
               
               Cow position:chr22:11200706-11200980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:6-290
               
               
               Cow position:chr22:11837541-11837263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):122, 198

               
               
               Conread position:6-290
               
               
               Cow position:chr22:11987554-11987270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):122, 62

               
               
               Conread position:6-292
               
               
               Cow position:chr22:42923199-42922909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:6-342
               
               
               Cow position:chr22:39472716-39472377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 220

               
               
               Conread position:6-361
               
               
               Cow position:chr22:11500441-11500797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 116

               
               
               Conread position:6-373
               
               
               Cow position:chr22:36540015-36539634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):62, 109

               
               
               Conread position:6-373
               
               
               Cow position:chr22:39494545-39494167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 284

               
               
               Conread position:6-408
               
               
               Cow position:chr22:17993370-17992958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 160

               
               
               Conread position:6-423
               
               
               Cow position:chr22:30954699-30955105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 196

               
               
               Conread position:6-438
               
               
               Cow position:chr22:30514915-30515361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 108

               
               
               Conread position:6-446
               
               
               Cow position:chr22:32326470-32326910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:303
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):132, 40

               
               
               Conread position:6-452
               
               
               Cow position:chr22:38940288-38939824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 60

               
               
               Conread position:6-452
               
               
               Cow position:chr22:40374266-40374726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:6-453
               
               
               Cow position:chr22:1279726-1279267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 122

               
               
               Conread position:6-453
               
               
               Cow position:chr22:32661177-32661627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 24

               
               
               Conread position:6-457
               
               
               Cow position:chr22:1326081-1326540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 27

               
               
               Conread position:6-457
               
               
               Cow position:chr22:22155261-22155725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:6-458
               
               
               Cow position:chr22:31646154-31646614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 186

               
               
               Conread position:6-459
               
               
               Cow position:chr22:14091568-14091096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:318
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):127, 62

               
               
               Conread position:6-459
               
               
               Cow position:chr22:23176799-23176316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 296

               
               
               Conread position:6-465
               
               
               Cow position:chr22:25246570-25247044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:6-467
               
               
               Cow position:chr22:13300080-13300546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 107

               
               
               Conread position:6-469
               
               
               Cow position:chr22:10302671-10303150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 72

               
               
               Conread position:6-469
               
               
               Cow position:chr22:41983044-41982588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:308
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):121, 49

               
               
               Conread position:6-485
               
               
               Cow position:chr22:5337937-5337449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 31

               
               
               Conread position:7-450
               
               
               Cow position:chr22:17152341-17152791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:300
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):120, 8

               
               
               Conread position:7-460
               
               
               Cow position:chr22:28071218-28071685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 48

               
               
               Conread position:8-252
               
               
               Cow position:chr22:12381561-12381808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:9-290
               
               
               Cow position:chr22:16235987-16235705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:9-356
               
               
               Cow position:chr22:30712412-30712773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:9-368
               
               
               Cow position:chr22:6123222-6122879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:254
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):119, 54

               
               
               Conread position:9-405
               
               
               Cow position:chr22:7838268-7838660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 176

               
               
               Conread position:9-428
               
               
               Cow position:chr22:24734648-24734225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 105

               
               
               Conread position:9-453
               
               
               Cow position:chr22:4535660-4535212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 59

               
               
               Conread position:9-456
               
               
               Cow position:chr22:17813900-17814353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 46

               
               
               Conread position:9-464
               
               
               Cow position:chr22:20626505-20626967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 72

               
               
               Conread position:9-465
               
               
               Cow position:chr22:27818663-27819132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 181

               
               
               Conread position:9-466
               
               
               Cow position:chr22:40349009-40349477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 221

               
               
               Conread position:10-358
               
               
               Cow position:chr22:10362737-10363083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):30, 45

               
               
               Conread position:10-453
               
               
               Cow position:chr22:40071633-40072095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:310
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):117, 228

               
               
               Conread position:10-460
               
               
               Cow position:chr22:18926018-18926483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 65

               
               
               Conread position:13-359
               
               
               Cow position:chr22:5041995-5042330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):114, 49

               
               
               Conread position:13-453
               
               
               Cow position:chr22:13735592-13735151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:314
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):115, 40

               
               
               Conread position:13-458
               
               
               Cow position:chr22:8733652-8733216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:306
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):115, 47

               
               
               Conread position:13-458
               
               
               Cow position:chr22:45513853-45513406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 33

               
               
               Conread position:13-460
               
               
               Cow position:chr22:25361167-25361609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):115, 17

               
               
               Conread position:14-355
               
               
               Cow position:chr22:20112171-20112513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):211, 58

               
               
               Conread position:14-445
               
               
               Cow position:chr22:23806879-23806431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:278
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):104, 285

               
               
               Conread position:14-445
               
               
               Cow position:chr22:34712389-34712835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 57

               
               
               Conread position:14-459
               
               
               Cow position:chr22:31870583-31870130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:318
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):70, 114

               
               
               Conread position:14-466
               
               
               Cow position:chr22:14143436-14142988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:310
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):113, 10

               
               
               Conread position:16-438
               
               
               Cow position:chr22:34398785-34398355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 161

               
               
               Conread position:16-460
               
               
               Cow position:chr22:43397689-43398127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 104

               
               
               Conread position:17-290
               
               
               Cow position:chr22:8303170-8302908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):225, 51

               
               
               Conread position:20-460
               
               
               Cow position:chr22:22861237-22860787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 93

               
               
               Conread position:23-459
               
               
               Cow position:chr22:16251889-16251447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 95

               
               
               Conread position:24-289
               
               
               Cow position:chr22:19738892-19738629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):167, 53

               
               
               Conread position:24-353
               
               
               Cow position:chr22:12777920-12777581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):53, 225

               
               
               Conread position:24-446
               
               
               Cow position:chr22:41244920-41245365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:293
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):53, 115

               
               
               Conread position:24-460
               
               
               Cow position:chr22:21567685-21568117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:306
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):190, 30

               
               
               Conread position:26-424
               
               
               Cow position:chr22:34476320-34475911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 87

               
               
               Conread position:31-464
               
               
               Cow position:chr22:30049887-30049438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 40

               
               
               Conread position:32-261
               
               
               Cow position:chr22:22013407-22013635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):96, 81

               
               
               Conread position:37-290
               
               
               Cow position:chr22:8063633-8063380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):91, 56

               
               
               Conread position:37-457
               
               
               Cow position:chr22:21746330-21746765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:295
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):75, 118

               
               
               Conread position:37-458
               
               
               Cow position:chr22:7913170-7913584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:293
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):91, 54

               
               
               Conread position:38-491
               
               
               Cow position:chr22:2502530-2502984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 75

               
               
               Conread position:40-305
               
               
               Cow position:chr22:26490153-26490423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):49, 137

               
               
               Conread position:42-460
               
               
               Cow position:chr22:5290540-5290977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 71

               
               
               Conread position:46-230
               
               
               Cow position:chr22:8329249-8329432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):82, 67

               
               
               Conread position:50-292
               
               
               Cow position:chr22:27700918-27701159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):78, 65

               
               
               Conread position:50-460
               
               
               Cow position:chr22:3949945-3950377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 274

               
               
               Conread position:52-449
               
               
               Cow position:chr22:645054-644655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 53

               
               
               Conread position:52-460
               
               
               Cow position:chr22:15490367-15490779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 8

               
               
               Conread position:56-465
               
               
               Cow position:chr22:766570-766161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):61, 238

               
               
               Conread position:57-467
               
               
               Cow position:chr22:23830643-23831063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):77, 100

               
               
               Conread position:62-459
               
               
               Cow position:chr22:15950661-15950262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:274
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):65, 108

               
               
               Conread position:65-460
               
               
               Cow position:chr22:36560937-36560532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):62, 38

               
               
               Conread position:66-460
               
               
               Cow position:chr22:27431963-27431578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:265
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):61, 142

               
               
               Conread position:67-428
               
               
               Cow position:chr22:1975334-1975702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 8

               
               
               Conread position:70-436
               
               
               Cow position:chr22:21355418-21355040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):5, 48

               
               
               Conread position:74-343
               
               
               Cow position:chr22:29013607-29013881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:74-436
               
               
               Cow position:chr22:12946438-12946081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 109

               
               
               Conread position:75-452
               
               
               Cow position:chr22:7851688-7852081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:75-460
               
               
               Cow position:chr22:28146413-28146802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:268
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):53, 178

               
               
               Conread position:76-453
               
               
               Cow position:chr22:17852892-17852517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):52, 37

               
               
               Conread position:77-353
               
               
               Cow position:chr22:25341751-25342026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):51, 230

               
               
               Conread position:77-437
               
               
               Cow position:chr22:845634-846005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:248
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:77-448
               
               
               Cow position:chr22:19775694-19775321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:77-458
               
               
               Cow position:chr22:4563093-4563486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:260
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):56, 127

               
               
               Conread position:77-459
               
               
               Cow position:chr22:9127137-9127532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):114, 36

               
               
               Conread position:77-459
               
               
               Cow position:chr22:9372251-9372645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:277
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):74, 49

               
               
               Conread position:77-460
               
               
               Cow position:chr22:2216553-2216933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):10, 123

               
               
               Conread position:77-460
               
               
               Cow position:chr22:2623783-2623395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:77-460
               
               
               Cow position:chr22:4061208-4060822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):51, 26

               
               
               Conread position:77-460
               
               
               Cow position:chr22:23854711-23855096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:276
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):15, 88

               
               
               Conread position:77-460
               
               
               Cow position:chr22:24176143-24175771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:272
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):51, 87

               
               
               Conread position:77-460
               
               
               Cow position:chr22:32894934-32895342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):51, 163

               
               
               Conread position:77-460
               
               
               Cow position:chr22:40048294-40048676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):51, 110

               
               
               Conread position:77-461
               
               
               Cow position:chr22:34750408-34750799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 150

               
               
               Conread position:77-461
               
               
               Cow position:chr22:35753575-35753177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):50, 78

               
               
               Conread position:77-465
               
               
               Cow position:chr22:15568288-15567887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:265
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):43, 154

               
               
               Conread position:78-446
               
               
               Cow position:chr22:19048071-19047704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):49, 36

               
               
               Conread position:78-447
               
               
               Cow position:chr22:4650913-4651289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:78-480
               
               
               Cow position:chr22:26339491-26339900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 105

               
               
               Conread position:79-290
               
               
               Cow position:chr22:14601247-14601448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):49, 95

               
               
               Conread position:79-452
               
               
               Cow position:chr22:4583303-4583678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:277
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:80-467
               
               
               Cow position:chr22:15090474-15090873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 241

               
               
               Conread position:81-340
               
               
               Cow position:chr22:1822138-1821874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):47, 10

               
               
               Conread position:82-445
               
               
               Cow position:chr22:28058305-28057940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 32

               
               
               Conread position:82-456
               
               
               Cow position:chr22:37201593-37201969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 63

               
               
               Conread position:82-457
               
               
               Cow position:chr22:22612847-22613228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):27, 116

               
               
               Conread position:82-458
               
               
               Cow position:chr22:534229-534624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 232

               
               
               Conread position:82-460
               
               
               Cow position:chr22:37029866-37029483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:82-460
               
               
               Cow position:chr22:38980643-38981011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):52, 29

               
               
               Conread position:83-290
               
               
               Cow position:chr22:44386661-44386462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):104, 45

               
               
               Conread position:83-373
               
               
               Cow position:chr22:295200-294903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:83-448
               
               
               Cow position:chr22:42612195-42612572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):108, 130

               
               
               Conread position:84-295
               
               
               Cow position:chr22:36761371-36761577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):155, 45

               
               
               Conread position:84-354
               
               
               Cow position:chr22:6360750-6360475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):44, 107

               
               
               Conread position:84-357
               
               
               Cow position:chr22:28731424-28731691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):44, 21

               
               
               Conread position:84-458
               
               
               Cow position:chr22:24066497-24066108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):44, 29

               
               
               Conread position:84-466
               
               
               Cow position:chr22:14179093-14178696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 29

               
               
               Conread position:85-453
               
               
               Cow position:chr22:37324286-37324659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 138

               
               
               Conread position:85-460
               
               
               Cow position:chr22:28665007-28665409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 241

               
               
               Conread position:85-466
               
               
               Cow position:chr22:14371906-14372303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 235

               
               
               Conread position:86-412
               
               
               Cow position:chr22:31593121-31592779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:86-458
               
               
               Cow position:chr22:23181294-23180922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:254
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):42, 27

               
               
               Conread position:86-459
               
               
               Cow position:chr22:13286183-13286573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:87-459
               
               
               Cow position:chr22:28351915-28351543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 126

               
               
               Conread position:87-460
               
               
               Cow position:chr22:7967439-7967827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:88-460
               
               
               Cow position:chr22:12968327-12967945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:88-464
               
               
               Cow position:chr22:26658797-26659173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 138

               
               
               Conread position:88-469
               
               
               Cow position:chr22:23115563-23115174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 141

               
               
               Conread position:90-463
               
               
               Cow position:chr22:30269159-30269535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):205, 53

               
               
               Conread position:90-474
               
               
               Cow position:chr22:17295184-17294792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:276
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):37, 27

               
               
               Conread position:91-443
               
               
               Cow position:chr22:24732800-24732451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 10

               
               
               Conread position:91-484
               
               
               Cow position:chr22:8116337-8115939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):37, 79

               
               
               Conread position:94-290
               
               
               Cow position:chr22:19376459-19376652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 5

               
               
               Conread position:94-460
               
               
               Cow position:chr22:3964933-3965311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:99-442
               
               
               Cow position:chr22:25630020-25629678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 283

               
               
               Conread position:100-463
               
               
               Cow position:chr22:7882303-7882684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):14, 139

               
               
               Conread position:103-460
               
               
               Cow position:chr22:28356792-28357153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):25, 135

               
               
               Conread position:105-306
               
               
               Cow position:chr22:4026367-4026569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):189, 104

               
               
               Conread position:105-446
               
               
               Cow position:chr22:7164712-7165074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):8, 47

               
               
               Conread position:105-457
               
               
               Cow position:chr22:23403882-23403520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):23, 72

               
               
               Conread position:105-484
               
               
               Cow position:chr22:5384414-5384801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):22, 77

               
               
               Conread position:107-446
               
               
               Cow position:chr22:8398051-8397717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):267, 10

               
               
               Conread position:108-460
               
               
               Cow position:chr22:14691214-14690845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:255
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):20, 206

               
               
               Conread position:109-343
               
               
               Cow position:chr22:20687056-20687302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 221

               
               
               Conread position:118-490
               
               
               Cow position:chr22:10585929-10585561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 108

               
               
               Conread position:119-414
               
               
               Cow position:chr22:27825609-27825919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):9, 72

               
               
               Conread position:120-460
               
               
               Cow position:chr22:43119955-43119604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):8, 107

               
               
               Conread position:126-446
               
               
               Cow position:chr22:47555625-47555959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):96, 52

               
               
               Conread position:130-448
               
               
               Cow position:chr22:10632700-10633026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):61, 99

               
               
               Conread position:130-466
               
               
               Cow position:chr22:5616084-5616432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):26, 191

               
               
               Conread position:131-414
               
               
               Cow position:chr22:13849664-13849374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):53, 168

               
               
               Conread position:131-442
               
               
               Cow position:chr22:11458608-11458922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):9, 130

               
               
               Conread position:131-466
               
               
               Cow position:chr22:3533734-3534066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):161, 14

               
               
               Conread position:139-466
               
               
               Cow position:chr22:15025310-15024973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):153, 38

               
               
               Conread position:141-453
               
               
               Cow position:chr22:41853692-41854025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 176

               
               
               Conread position:142-356
               
               
               Cow position:chr22:4974623-4974410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):150, 38

               
               
               Conread position:143-460
               
               
               Cow position:chr22:27274895-27274575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):45, 83

               
               
               Conread position:144-446
               
               
               Cow position:chr22:14378885-14378585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 86

               
               
               Conread position:144-460
               
               
               Cow position:chr22:27047601-27047288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):170, 35

               
               
               Conread position:146-452
               
               
               Cow position:chr22:2523763-2524080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):51, 81

               
               
               Conread position:148-465
               
               
               Cow position:chr22:22907996-22908316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 27

               
               
               Conread position:149-458
               
               
               Cow position:chr22:12315615-12315933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):143, 167

               
               
               Conread position:149-460
               
               
               Cow position:chr22:21530547-21530234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):143, 61

               
               
               Conread position:150-457
               
               
               Cow position:chr22:1848869-1849196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:150-460
               
               
               Cow position:chr22:27835343-27835656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):83, 26

               
               
               Conread position:159-459
               
               
               Cow position:chr22:36433156-36432849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 55

               
               
               Conread position:159-465
               
               
               Cow position:chr22:10981200-10981520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):11, 66

               
               
               Conread position:165-466
               
               
               Cow position:chr22:12313243-12313555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):135, 125

               
               
               Conread position:166-460
               
               
               Cow position:chr22:12388908-12389226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:171-459
               
               
               Cow position:chr22:32698586-32698888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:177-460
               
               
               Cow position:chr22:6097195-6096892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:179-466
               
               
               Cow position:chr22:40789404-40789696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):113, 11

               
               
               Conread position:181-358
               
               
               Cow position:chr22:12598923-12599102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):83, 56

               
               
               Conread position:181-444
               
               
               Cow position:chr22:24628814-24628548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):184, 124

               
               
               Conread position:181-460
               
               
               Cow position:chr22:26969618-26969915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:191-460
               
               
               Cow position:chr22:2912736-2912465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):166, 90

               
               
               Conread position:192-453
               
               
               Cow position:chr22:22553388-22553141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):112, 97

               
               
               Conread position:194-419
               
               
               Cow position:chr22:10292811-10293035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):37, 171

               
               
               Conread position:194-460
               
               
               Cow position:chr22:33399632-33399363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):100, 39

               
               
               Conread position:212-443
               
               
               Cow position:chr22:45846013-45846249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):157, 13

               
               
               Conread position:212-444
               
               
               Cow position:chr22:11767183-11766941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:212-453
               
               
               Cow position:chr22:15668607-15668358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):55, 166

               
               
               Conread position:212-453
               
               
               Cow position:chr22:27740759-27741008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:212-458
               
               
               Cow position:chr22:31153823-31154078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:212-460
               
               
               Cow position:chr22:25539858-25540124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):27, 51

               
               
               Conread position:213-469
               
               
               Cow position:chr22:27681583-27681855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:215-445
               
               
               Cow position:chr22:12929405-12929171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):154, 75

               
               
               Conread position:216-450
               
               
               Cow position:chr22:8090657-8090417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):26, 9

               
               
               Conread position:222-445
               
               
               Cow position:chr22:13221986-13222227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:223-459
               
               
               Cow position:chr22:10609231-10609480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):69, 108

               
               
               Conread position:225-460
               
               
               Cow position:chr22:43237528-43237283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:238-458
               
               
               Cow position:chr22:15020504-15020290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 69

               
               
               Conread position:238-460
               
               
               Cow position:chr22:4135510-4135724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):53, 65

               
               
               Conread position:244-466
               
               
               Cow position:chr22:9597682-9597449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:246-463
               
               
               Cow position:chr22:26074822-26075051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:249-435
               
               
               Cow position:chr22:18293858-18293665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 59

               
               
               Conread position:251-460
               
               
               Cow position:chr22:24915742-24915962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):41, 68

               
               
               Conread position:258-460
               
               
               Cow position:chr22:13878096-13878302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):34, 54

               
               
               Conread position:258-466
               
               
               Cow position:chr22:23676049-23675837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 35

               
               
               Conread position:258-485
               
               
               Cow position:chr22:26122809-26123048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:260-435
               
               
               Cow position:chr22:26017824-26017646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):59, 8

               
               
               Conread position:260-459
               
               
               Cow position:chr22:530653-530454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):32, 59

               
               
               Conread position:260-460
               
               
               Cow position:chr22:12678506-12678295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):32, 59

               
               
               Conread position:261-464
               
               
               Cow position:chr22:10553770-10553552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:264-459
               
               
               Cow position:chr22:10285885-10286094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):22, 164

               
               
               Conread position:269-458
               
               
               Cow position:chr22:10533516-10533716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:280-451
               
               
               Cow position:chr22:28672078-28672262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:293-451
               
               
               Cow position:chr22:3486821-3486662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):61, 27

               
               
               Conread position:324-459
               
               
               Cow position:chr22:3239893-3240032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):32, 103

               
               
               Conread position:328-458
               
               
               Cow position:chr22:21483933-21484064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:348-458
               
               
               Cow position:chr22:35533227-35533113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:2-370
               
               
               Cow position:chr23:9595167-9594800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 7

               
               
               Conread position:2-453
               
               
               Cow position:chr23:39752775-39753237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 228

               
               
               Conread position:2-458
               
               
               Cow position:chr23:1924171-1923707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 7

               
               
               Conread position:2-458
               
               
               Cow position:chr23:10554349-10553880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 8

               
               
               Conread position:2-490
               
               
               Cow position:chr23:7596666-7596193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 7

               
               
               Conread position:3-373
               
               
               Cow position:chr23:7402368-7402737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 47

               
               
               Conread position:4-436
               
               
               Cow position:chr23:10014212-10014633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 5

               
               
               Conread position:4-458
               
               
               Cow position:chr23:6995303-6994854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 54

               
               
               Conread position:4-469
               
               
               Cow position:chr23:14164740-14164257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 5

               
               
               Conread position:5-279
               
               
               Cow position:chr23:26741786-26741518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 174

               
               
               Conread position:5-289
               
               
               Cow position:chr23:221734-222017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 167

               
               
               Conread position:5-290
               
               
               Cow position:chr23:361247-360966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):81, 88

               
               
               Conread position:5-290
               
               
               Cow position:chr23:3727735-3727446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 46

               
               
               Conread position:5-290
               
               
               Cow position:chr23:14191216-14191502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 81

               
               
               Conread position:5-290
               
               
               Cow position:chr23:30656493-30656225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):148, 57

               
               
               Conread position:5-419
               
               
               Cow position:chr23:15710413-15709982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 110

               
               
               Conread position:5-424
               
               
               Cow position:chr23:32309345-32309780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:291
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):122, 167

               
               
               Conread position:5-427
               
               
               Cow position:chr23:18322753-18322328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 46

               
               
               Conread position:5-444
               
               
               Cow position:chr23:19002404-19001953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 31

               
               
               Conread position:5-444
               
               
               Cow position:chr23:40780992-40781444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 96

               
               
               Conread position:5-446
               
               
               Cow position:chr23:1721338-1720866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:305
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):70, 187

               
               
               Conread position:5-449
               
               
               Cow position:chr23:5389372-5389818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:304
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):109, 33

               
               
               Conread position:5-451
               
               
               Cow position:chr23:22298352-22297917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-456
               
               
               Cow position:chr23:14839068-14838618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-456
               
               
               Cow position:chr23:20435388-20434937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:305
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):78, 64

               
               
               Conread position:5-457
               
               
               Cow position:chr23:22804388-22804852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 71

               
               
               Conread position:5-459
               
               
               Cow position:chr23:533897-534357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 70

               
               
               Conread position:5-459
               
               
               Cow position:chr23:1398370-1397909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 90

               
               
               Conread position:5-459
               
               
               Cow position:chr23:5162091-5162561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 61

               
               
               Conread position:5-459
               
               
               Cow position:chr23:18698363-18697894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 184

               
               
               Conread position:5-460
               
               
               Cow position:chr23:344511-344056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 57

               
               
               Conread position:5-460
               
               
               Cow position:chr23:2502200-2501721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:304
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):115, 191

               
               
               Conread position:5-460
               
               
               Cow position:chr23:21336825-21336351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 175

               
               
               Conread position:5-460
               
               
               Cow position:chr23:37065505-37065982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 25

               
               
               Conread position:5-465
               
               
               Cow position:chr23:1430136-1429692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 226

               
               
               Conread position:5-467
               
               
               Cow position:chr23:24866970-24867447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 42

               
               
               Conread position:5-469
               
               
               Cow position:chr23:10852719-10853185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 65

               
               
               Conread position:5-469
               
               
               Cow position:chr23:40777927-40778403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-479
               
               
               Cow position:chr23:9268254-9268729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-479
               
               
               Cow position:chr23:38455521-38455026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 151

               
               
               Conread position:5-486
               
               
               Cow position:chr23:13511400-13511884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 56

               
               
               Conread position:6-288
               
               
               Cow position:chr23:37992661-37992934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):122, 93

               
               
               Conread position:6-288
               
               
               Cow position:chr23:39793115-39793398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):28, 144

               
               
               Conread position:6-419
               
               
               Cow position:chr23:1647284-1647706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):82, 195

               
               
               Conread position:6-426
               
               
               Cow position:chr23:34348001-34348412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:290
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):107, 62

               
               
               Conread position:6-434
               
               
               Cow position:chr23:5870522-5870089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 300

               
               
               Conread position:6-435
               
               
               Cow position:chr23:18802608-18802164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 204

               
               
               Conread position:6-444
               
               
               Cow position:chr23:6223675-6224088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):122, 31

               
               
               Conread position:6-459
               
               
               Cow position:chr23:9734084-9734538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):364, 107

               
               
               Conread position:6-460
               
               
               Cow position:chr23:1337649-1337177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 302

               
               
               Conread position:6-466
               
               
               Cow position:chr23:7844954-7845433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 69

               
               
               Conread position:6-471
               
               
               Cow position:chr23:1700587-1701034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:318
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):185, 69

               
               
               Conread position:9-323
               
               
               Cow position:chr23:32961708-32961387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):68, 114

               
               
               Conread position:9-436
               
               
               Cow position:chr23:11844959-11845382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:312
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:9-442
               
               
               Cow position:chr23:36129230-36128801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 50

               
               
               Conread position:9-460
               
               
               Cow position:chr23:30662956-30662507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 90

               
               
               Conread position:9-469
               
               
               Cow position:chr23:4968862-4968390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:331
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):5, 22

               
               
               Conread position:10-329
               
               
               Cow position:chr23:7175292-7175610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:10-355
               
               
               Cow position:chr23:39028470-39028798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):203, 115

               
               
               Conread position:11-288
               
               
               Cow position:chr23:39309445-39309167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):9, 62

               
               
               Conread position:13-460
               
               
               Cow position:chr23:25865007-25864566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 55

               
               
               Conread position:24-466
               
               
               Cow position:chr23:21445790-21446255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:313
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):64, 137

               
               
               Conread position:25-452
               
               
               Cow position:chr23:31970837-31970414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:292
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):9, 89

               
               
               Conread position:29-446
               
               
               Cow position:chr23:6593014-6592592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 93

               
               
               Conread position:37-460
               
               
               Cow position:chr23:3247287-3247719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 29

               
               
               Conread position:37-470
               
               
               Cow position:chr23:29459398-29458955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 174

               
               
               Conread position:39-311
               
               
               Cow position:chr23:4608693-4608408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:39-451
               
               
               Cow position:chr23:13599046-13599462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 54

               
               
               Conread position:40-465
               
               
               Cow position:chr23:1883092-1883534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 195

               
               
               Conread position:42-459
               
               
               Cow position:chr23:4726503-4726923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:298
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):149, 35

               
               
               Conread position:48-354
               
               
               Cow position:chr23:27862035-27862346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):27, 82

               
               
               Conread position:50-446
               
               
               Cow position:chr23:1690497-1690890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:274
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):78, 180

               
               
               Conread position:57-460
               
               
               Cow position:chr23:38208429-38208857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:301
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):18, 13

               
               
               Conread position:61-431
               
               
               Cow position:chr23:3262779-3262396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:62-352
               
               
               Cow position:chr23:33233184-33232893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):65, 42

               
               
               Conread position:66-456
               
               
               Cow position:chr23:22396716-22396320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:68-453
               
               
               Cow position:chr23:36309154-36309544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 46

               
               
               Conread position:68-460
               
               
               Cow position:chr23:20195189-20194794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 9

               
               
               Conread position:71-460
               
               
               Cow position:chr23:186901-187309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 162

               
               
               Conread position:76-341
               
               
               Cow position:chr23:1991692-1991428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):52, 103

               
               
               Conread position:76-460
               
               
               Cow position:chr23:16583174-16582779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:264
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):52, 120

               
               
               Conread position:77-289
               
               
               Cow position:chr23:21343510-21343302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):56, 22

               
               
               Conread position:77-437
               
               
               Cow position:chr23:16881421-16881055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):51, 74

               
               
               Conread position:77-459
               
               
               Cow position:chr23:29242680-29243067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 289

               
               
               Conread position:77-466
               
               
               Cow position:chr23:26948926-26949333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):51, 249

               
               
               Conread position:77-482
               
               
               Cow position:chr23:17404588-17404992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):51, 40

               
               
               Conread position:78-306
               
               
               Cow position:chr23:36199030-36199259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):50, 120

               
               
               Conread position:78-445
               
               
               Cow position:chr23:8293238-8293617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):50, 144

               
               
               Conread position:78-460
               
               
               Cow position:chr23:11380521-11380121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):49, 245

               
               
               Conread position:78-463
               
               
               Cow position:chr23:25358468-25358848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:274
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):50, 122

               
               
               Conread position:79-443
               
               
               Cow position:chr23:5617317-5617687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 38

               
               
               Conread position:79-457
               
               
               Cow position:chr23:20388898-20388526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):120, 34

               
               
               Conread position:79-465
               
               
               Cow position:chr23:21452995-21452592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:271
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):46, 157

               
               
               Conread position:81-445
               
               
               Cow position:chr23:33711512-33711875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):213, 22

               
               
               Conread position:81-456
               
               
               Cow position:chr23:29034053-29034443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:257
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):47, 149

               
               
               Conread position:82-453
               
               
               Cow position:chr23:15287393-15287016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):45, 199

               
               
               Conread position:83-460
               
               
               Cow position:chr23:3967805-3967429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):209, 43

               
               
               Conread position:83-466
               
               
               Cow position:chr23:20057125-20056740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):45, 144

               
               
               Conread position:84-368
               
               
               Cow position:chr23:1803537-1803817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):44, 31

               
               
               Conread position:85-465
               
               
               Cow position:chr23:29346015-29345636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 42

               
               
               Conread position:85-466
               
               
               Cow position:chr23:6244843-6244460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:261
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):43, 145

               
               
               Conread position:86-353
               
               
               Cow position:chr23:808907-809180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):31, 83

               
               
               Conread position:86-445
               
               
               Cow position:chr23:27563964-27563590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:260
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):41, 344

               
               
               Conread position:86-459
               
               
               Cow position:chr23:26632545-26632934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:268
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):42, 27

               
               
               Conread position:87-305
               
               
               Cow position:chr23:4810496-4810718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:89-433
               
               
               Cow position:chr23:33940408-33940054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:249
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):39, 151

               
               
               Conread position:91-427
               
               
               Cow position:chr23:4562638-4562983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:91-465
               
               
               Cow position:chr23:9599252-9599629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):37, 86

               
               
               Conread position:93-459
               
               
               Cow position:chr23:18402534-18402161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 84

               
               
               Conread position:96-455
               
               
               Cow position:chr23:16700284-16699916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 68

               
               
               Conread position:97-353
               
               
               Cow position:chr23:2055458-2055720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):31, 133

               
               
               Conread position:98-460
               
               
               Cow position:chr23:5706756-5707124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):16, 137

               
               
               Conread position:99-466
               
               
               Cow position:chr23:1885418-1885031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):33, 214

               
               
               Conread position:104-450
               
               
               Cow position:chr23:27544595-27544947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:251
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):24, 88

               
               
               Conread position:106-466
               
               
               Cow position:chr23:10416658-10416286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):22, 74

               
               
               Conread position:107-290
               
               
               Cow position:chr23:11080847-11081025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):25, 65

               
               
               Conread position:107-452
               
               
               Cow position:chr23:5603505-5603161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 74

               
               
               Conread position:107-461
               
               
               Cow position:chr23:15742865-15743223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):21, 59

               
               
               Conread position:109-426
               
               
               Cow position:chr23:25378422-25378743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):11, 40

               
               
               Conread position:110-455
               
               
               Cow position:chr23:18902281-18901927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):81, 119

               
               
               Conread position:114-467
               
               
               Cow position:chr23:3191350-3190989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):99, 67

               
               
               Conread position:118-451
               
               
               Cow position:chr23:5723320-5723656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):10, 258

               
               
               Conread position:129-452
               
               
               Cow position:chr23:1742146-1742476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):163, 41

               
               
               Conread position:130-306
               
               
               Cow position:chr23:4523189-4523010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 140

               
               
               Conread position:130-453
               
               
               Cow position:chr23:23409536-23409857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):240, 51

               
               
               Conread position:130-460
               
               
               Cow position:chr23:18296597-18296938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:130-466
               
               
               Cow position:chr23:40789775-40790107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):163, 60

               
               
               Conread position:133-460
               
               
               Cow position:chr23:24704072-24704422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:143-465
               
               
               Cow position:chr23:21764720-21765057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):48, 92

               
               
               Conread position:146-460
               
               
               Cow position:chr23:1636088-1636400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):115, 34

               
               
               Conread position:146-487
               
               
               Cow position:chr23:19371265-19370912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 93

               
               
               Conread position:152-467
               
               
               Cow position:chr23:39813321-39813639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):141, 28

               
               
               Conread position:156-459
               
               
               Cow position:chr23:3282299-3281991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):142, 67

               
               
               Conread position:159-411
               
               
               Cow position:chr23:5515786-5516051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:164-456
               
               
               Cow position:chr23:4104229-4104522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):76, 46

               
               
               Conread position:169-453
               
               
               Cow position:chr23:4966650-4966942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):123, 17

               
               
               Conread position:171-459
               
               
               Cow position:chr23:1767661-1767960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):85, 46

               
               
               Conread position:171-460
               
               
               Cow position:chr23:34356468-34356771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):66, 142

               
               
               Conread position:172-469
               
               
               Cow position:chr23:18416216-18415916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):61, 142

               
               
               Conread position:181-446
               
               
               Cow position:chr23:19774615-19774885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):189, 44

               
               
               Conread position:181-450
               
               
               Cow position:chr23:12091518-12091236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:181-453
               
               
               Cow position:chr23:12334050-12334333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):107, 28

               
               
               Conread position:181-459
               
               
               Cow position:chr23:33622311-33622018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 86

               
               
               Conread position:184-460
               
               
               Cow position:chr23:4327850-4327569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:186-366
               
               
               Cow position:chr23:23113875-23114061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:186-404
               
               
               Cow position:chr23:1921381-1921152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:186-460
               
               
               Cow position:chr23:4329835-4329535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:190-452
               
               
               Cow position:chr23:29069595-29069318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):51, 12

               
               
               Conread position:203-366
               
               
               Cow position:chr23:9713180-9713351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):22, 10

               
               
               Conread position:212-458
               
               
               Cow position:chr23:30950832-30951084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:212-459
               
               
               Cow position:chr23:3890694-3890441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):21, 78

               
               
               Conread position:212-460
               
               
               Cow position:chr23:12363746-12363487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):84, 22

               
               
               Conread position:212-469
               
               
               Cow position:chr23:5437126-5436864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):158, 100

               
               
               Conread position:223-445
               
               
               Cow position:chr23:1701053-1701287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:225-460
               
               
               Cow position:chr23:1655779-1656025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:225-460
               
               
               Cow position:chr23:13945920-13946168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:228-458
               
               
               Cow position:chr23:39780644-39780883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):65, 17

               
               
               Conread position:238-460
               
               
               Cow position:chr23:4335975-4336197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 24

               
               
               Conread position:241-445
               
               
               Cow position:chr23:2405804-2406017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):129, 39

               
               
               Conread position:244-440
               
               
               Cow position:chr23:4795076-4795280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:254-460
               
               
               Cow position:chr23:20002168-20002384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):38, 198

               
               
               Conread position:279-469
               
               
               Cow position:chr23:35503723-35503913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 64

               
               
               Conread position:296-459
               
               
               Cow position:chr23:3244508-3244339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 23

               
               
               Conread position:297-442
               
               
               Cow position:chr23:30655852-30655701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:301-458
               
               
               Cow position:chr23:14895710-14895543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:324-460
               
               
               Cow position:chr23:3835608-3835465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:370-466
               
               
               Cow position:chr23:18417132-18417227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:83
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):12, 85

               
               
               Conread position:2-353
               
               
               Cow position:chr24:24137224-24136872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 11

               
               
               Conread position:2-460
               
               
               Cow position:chr24:42103006-42103466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 6

               
               
               Conread position:4-459
               
               
               Cow position:chr24:20874317-20874784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 42

               
               
               Conread position:4-460
               
               
               Cow position:chr24:29679673-29679207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 5

               
               
               Conread position:5-230
               
               
               Cow position:chr24:11874986-11874769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:5-268
               
               
               Cow position:chr24:40056077-40055820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):123, 57

               
               
               Conread position:5-287
               
               
               Cow position:chr24:11006852-11007140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:5-290
               
               
               Cow position:chr24:27543838-27543553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 198

               
               
               Conread position:5-290
               
               
               Cow position:chr24:33238911-33238619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 252

               
               
               Conread position:5-312
               
               
               Cow position:chr24:21264868-21264561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 91

               
               
               Conread position:5-356
               
               
               Cow position:chr24:3152937-3152588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 74

               
               
               Conread position:5-356
               
               
               Cow position:chr24:36486426-36486073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:255
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):20, 15

               
               
               Conread position:5-368
               
               
               Cow position:chr24:15472996-15473362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):123, 70

               
               
               Conread position:5-370
               
               
               Cow position:chr24:18405666-18405304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 112

               
               
               Conread position:5-436
               
               
               Cow position:chr24:27052853-27052418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 55

               
               
               Conread position:5-440
               
               
               Cow position:chr24:211619-212071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 225

               
               
               Conread position:5-443
               
               
               Cow position:chr24:43363998-43364445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 22

               
               
               Conread position:5-444
               
               
               Cow position:chr24:31323926-31324372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):77, 48

               
               
               Conread position:5-444
               
               
               Cow position:chr24:32370273-32369827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 176

               
               
               Conread position:5-446
               
               
               Cow position:chr24:29170614-29171051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 49

               
               
               Conread position:5-446
               
               
               Cow position:chr24:33153426-33153866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:5-448
               
               
               Cow position:chr24:11886800-11887248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 94

               
               
               Conread position:5-448
               
               
               Cow position:chr24:25677671-25678115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 30

               
               
               Conread position:5-448
               
               
               Cow position:chr24:28690332-28690776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 165

               
               
               Conread position:5-450
               
               
               Cow position:chr24:39483114-39483570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 93

               
               
               Conread position:5-452
               
               
               Cow position:chr24:29064005-29063563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 58

               
               
               Conread position:5-453
               
               
               Cow position:chr24:11839818-11840284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 81

               
               
               Conread position:5-453
               
               
               Cow position:chr24:15246986-15246546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:318
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):114, 31

               
               
               Conread position:5-453
               
               
               Cow position:chr24:24250362-24250819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 185

               
               
               Conread position:5-453
               
               
               Cow position:chr24:30235516-30235968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 121

               
               
               Conread position:5-459
               
               
               Cow position:chr24:2402739-2402267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 124

               
               
               Conread position:5-460
               
               
               Cow position:chr24:17104926-17104466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 60

               
               
               Conread position:5-460
               
               
               Cow position:chr24:18485362-18484892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 224

               
               
               Conread position:5-460
               
               
               Cow position:chr24:18741931-18741468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 45

               
               
               Conread position:5-461
               
               
               Cow position:chr24:39850239-39849784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 122

               
               
               Conread position:5-469
               
               
               Cow position:chr24:27149045-27149496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 72

               
               
               Conread position:5-472
               
               
               Cow position:chr24:6450170-6450603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:321
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-474
               
               
               Cow position:chr24:27906066-27906556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 257

               
               
               Conread position:6-230
               
               
               Cow position:chr24:29606428-29606203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):48, 31

               
               
               Conread position:6-290
               
               
               Cow position:chr24:3631156-3631432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):122, 173

               
               
               Conread position:6-290
               
               
               Cow position:chr24:20970153-20969876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):126, 170

               
               
               Conread position:6-357
               
               
               Cow position:chr24:27270435-27270766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):233, 35

               
               
               Conread position:6-373
               
               
               Cow position:chr24:7917730-7917352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 122

               
               
               Conread position:6-393
               
               
               Cow position:chr24:20024246-20024650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:6-414
               
               
               Cow position:chr24:25320631-25321043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 62

               
               
               Conread position:6-435
               
               
               Cow position:chr24:39440918-39440489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 56

               
               
               Conread position:6-436
               
               
               Cow position:chr24:201994-201557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 118

               
               
               Conread position:6-443
               
               
               Cow position:chr24:44054503-44054081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 174

               
               
               Conread position:6-446
               
               
               Cow position:chr24:19658186-19658626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 293

               
               
               Conread position:6-456
               
               
               Cow position:chr24:40129751-40130229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 130

               
               
               Conread position:6-457
               
               
               Cow position:chr24:28496949-28496482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 107

               
               
               Conread position:6-458
               
               
               Cow position:chr24:32054310-32054762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 186

               
               
               Conread position:6-459
               
               
               Cow position:chr24:29673158-29673625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 426

               
               
               Conread position:6-460
               
               
               Cow position:chr24:12851377-12851809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:309
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):129, 38

               
               
               Conread position:6-460
               
               
               Cow position:chr24:14648688-14648255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:299
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):121, 58

               
               
               Conread position:6-460
               
               
               Cow position:chr24:19466294-19465814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 446

               
               
               Conread position:6-466
               
               
               Cow position:chr24:27874241-27874693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 176

               
               
               Conread position:6-466
               
               
               Cow position:chr24:30484295-30483829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:327
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):122, 68

               
               
               Conread position:6-466
               
               
               Cow position:chr24:44041367-44040896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 51

               
               
               Conread position:6-469
               
               
               Cow position:chr24:33944032-33944516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 170

               
               
               Conread position:6-485
               
               
               Cow position:chr24:814623-814143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 62

               
               
               Conread position:7-457
               
               
               Cow position:chr24:28062586-28063048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 47

               
               
               Conread position:7-460
               
               
               Cow position:chr24:6102449-6102931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:326
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):91, 287

               
               
               Conread position:7-466
               
               
               Cow position:chr24:27844880-27844418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 203

               
               
               Conread position:9-290
               
               
               Cow position:chr24:29027694-29027967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:9-355
               
               
               Cow position:chr24:39900679-39900330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):103, 113

               
               
               Conread position:9-452
               
               
               Cow position:chr24:27290522-27290967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 59

               
               
               Conread position:9-466
               
               
               Cow position:chr24:28553904-28553454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 106

               
               
               Conread position:10-306
               
               
               Cow position:chr24:27809822-27810129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:10-446
               
               
               Cow position:chr24:20225380-20225826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 284

               
               
               Conread position:10-452
               
               
               Cow position:chr24:41985609-41986092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:10-457
               
               
               Cow position:chr24:17955792-17955344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 67

               
               
               Conread position:10-476
               
               
               Cow position:chr24:29596165-29595690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 26

               
               
               Conread position:13-459
               
               
               Cow position:chr24:27267284-27267718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 55

               
               
               Conread position:13-460
               
               
               Cow position:chr24:32205150-32204689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 188

               
               
               Conread position:14-453
               
               
               Cow position:chr24:35675206-35675633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:293
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):114, 49

               
               
               Conread position:17-414
               
               
               Cow position:chr24:38347328-38347731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 302

               
               
               Conread position:20-460
               
               
               Cow position:chr24:44987721-44987269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:314
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):92, 142

               
               
               Conread position:24-436
               
               
               Cow position:chr24:3430379-3430813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):50, 156

               
               
               Conread position:24-460
               
               
               Cow position:chr24:34742407-34742857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:25-446
               
               
               Cow position:chr24:34272460-34272902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 174

               
               
               Conread position:26-304
               
               
               Cow position:chr24:27720090-27719815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):102, 37

               
               
               Conread position:29-446
               
               
               Cow position:chr24:28319544-28319119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 212

               
               
               Conread position:36-361
               
               
               Cow position:chr24:34315028-34315353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):92, 39

               
               
               Conread position:37-460
               
               
               Cow position:chr24:35150191-35150622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 87

               
               
               Conread position:40-336
               
               
               Cow position:chr24:40908689-40908992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:216
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):88, 120

               
               
               Conread position:47-460
               
               
               Cow position:chr24:18970808-18970401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 30

               
               
               Conread position:48-420
               
               
               Cow position:chr24:27341343-27340957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:271
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):79, 190

               
               
               Conread position:48-460
               
               
               Cow position:chr24:29781843-29782264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 65

               
               
               Conread position:50-304
               
               
               Cow position:chr24:18734677-18734416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):58, 97

               
               
               Conread position:54-354
               
               
               Cow position:chr24:42007433-42007730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):74, 59

               
               
               Conread position:54-460
               
               
               Cow position:chr24:15861910-15861490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 34

               
               
               Conread position:58-359
               
               
               Cow position:chr24:44808936-44809246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):69, 28

               
               
               Conread position:59-471
               
               
               Cow position:chr24:43683765-43683349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):12, 69

               
               
               Conread position:62-282
               
               
               Cow position:chr24:28600918-28600699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):28, 91

               
               
               Conread position:62-459
               
               
               Cow position:chr24:31159321-31159718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 113

               
               
               Conread position:65-290
               
               
               Cow position:chr24:6914066-6913842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):63, 95

               
               
               Conread position:66-459
               
               
               Cow position:chr24:19535545-19535149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:278
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):227, 60

               
               
               Conread position:75-290
               
               
               Cow position:chr24:18324322-18324545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:76-466
               
               
               Cow position:chr24:27608385-27607996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:77-287
               
               
               Cow position:chr24:21768352-21768567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):50, 60

               
               
               Conread position:77-449
               
               
               Cow position:chr24:34396447-34396085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):215, 29

               
               
               Conread position:77-472
               
               
               Cow position:chr24:8886626-8887024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:285
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):51, 96

               
               
               Conread position:78-288
               
               
               Cow position:chr24:18974912-18975122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):49, 35

               
               
               Conread position:78-290
               
               
               Cow position:chr24:591621-591837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:78-448
               
               
               Cow position:chr24:29388961-29389326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:78-452
               
               
               Cow position:chr24:24755165-24755543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:272
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):8, 37

               
               
               Conread position:78-452
               
               
               Cow position:chr24:43432513-43432883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 35

               
               
               Conread position:78-460
               
               
               Cow position:chr24:18331447-18331824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:273
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):50, 87

               
               
               Conread position:79-436
               
               
               Cow position:chr24:27726292-27725932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:251
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):49, 91

               
               
               Conread position:79-465
               
               
               Cow position:chr24:28699769-28700162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 175

               
               
               Conread position:81-453
               
               
               Cow position:chr24:35073806-35074180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 259

               
               
               Conread position:82-449
               
               
               Cow position:chr24:43200559-43200181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 110

               
               
               Conread position:83-306
               
               
               Cow position:chr24:5151950-5152175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):15, 31

               
               
               Conread position:83-355
               
               
               Cow position:chr24:17567106-17567376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):45, 73

               
               
               Conread position:83-459
               
               
               Cow position:chr24:17294471-17294095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:83-465
               
               
               Cow position:chr24:40592437-40592827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:252
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):51, 32

               
               
               Conread position:84-290
               
               
               Cow position:chr24:27941291-27941086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):44, 67

               
               
               Conread position:84-460
               
               
               Cow position:chr24:20942894-20943265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:271
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):107, 40

               
               
               Conread position:85-432
               
               
               Cow position:chr24:7913716-7914082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:253
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:86-465
               
               
               Cow position:chr24:1269523-1269891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):42, 101

               
               
               Conread position:88-460
               
               
               Cow position:chr24:40849885-40850255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 27

               
               
               Conread position:90-290
               
               
               Cow position:chr24:27967803-27968000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 101

               
               
               Conread position:90-419
               
               
               Cow position:chr24:30545133-30544803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):37, 113

               
               
               Conread position:91-464
               
               
               Cow position:chr24:19769222-19769599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 72

               
               
               Conread position:92-440
               
               
               Cow position:chr24:41755591-41755946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:93-460
               
               
               Cow position:chr24:18390562-18390197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:97-465
               
               
               Cow position:chr24:16994624-16994992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:117-290
               
               
               Cow position:chr24:30776918-30776742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:129-290
               
               
               Cow position:chr24:18343811-18343975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:129-358
               
               
               Cow position:chr24:18695384-18695613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):165, 71

               
               
               Conread position:130-343
               
               
               Cow position:chr24:27207431-27207216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):162, 174

               
               
               Conread position:130-452
               
               
               Cow position:chr24:41068032-41068356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):40, 152

               
               
               Conread position:130-453
               
               
               Cow position:chr24:42825734-42825406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):61, 99

               
               
               Conread position:130-464
               
               
               Cow position:chr24:2096125-2095772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):162, 95

               
               
               Conread position:132-460
               
               
               Cow position:chr24:33222174-33221828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):163, 58

               
               
               Conread position:141-460
               
               
               Cow position:chr24:24457472-24457147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):31, 149

               
               
               Conread position:141-460
               
               
               Cow position:chr24:28327308-28326976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):155, 57

               
               
               Conread position:142-460
               
               
               Cow position:chr24:21519215-21519531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):88, 27

               
               
               Conread position:143-371
               
               
               Cow position:chr24:10841439-10841200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):51, 26

               
               
               Conread position:145-466
               
               
               Cow position:chr24:16509751-16510087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):147, 31

               
               
               Conread position:149-445
               
               
               Cow position:chr24:22079239-22079549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 249

               
               
               Conread position:151-460
               
               
               Cow position:chr24:15373194-15373509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):66, 75

               
               
               Conread position:153-395
               
               
               Cow position:chr24:5911-5666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):66, 74

               
               
               Conread position:159-450
               
               
               Cow position:chr24:352812-352513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 50

               
               
               Conread position:163-469
               
               
               Cow position:chr24:16089029-16089342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):27, 66

               
               
               Conread position:181-431
               
               
               Cow position:chr24:17434426-17434685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):21, 113

               
               
               Conread position:181-446
               
               
               Cow position:chr24:15347410-15347679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 30

               
               
               Conread position:181-460
               
               
               Cow position:chr24:17832999-17832715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):111, 138

               
               
               Conread position:181-466
               
               
               Cow position:chr24:41423424-41423711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):112, 44

               
               
               Conread position:183-452
               
               
               Cow position:chr24:16895619-16895341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):107, 50

               
               
               Conread position:186-477
               
               
               Cow position:chr24:32070786-32071082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):80, 39

               
               
               Conread position:188-459
               
               
               Cow position:chr24:34008756-34008468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:212-466
               
               
               Cow position:chr24:7777770-7777519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):19, 26

               
               
               Conread position:213-460
               
               
               Cow position:chr24:5683125-5683385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):79, 24

               
               
               Conread position:216-456
               
               
               Cow position:chr24:37395358-37395112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):81, 21

               
               
               Conread position:224-445
               
               
               Cow position:chr24:24662272-24662042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):68, 30

               
               
               Conread position:226-460
               
               
               Cow position:chr24:34390156-34390380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):156, 36

               
               
               Conread position:227-459
               
               
               Cow position:chr24:39523588-39523346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):16, 93

               
               
               Conread position:238-449
               
               
               Cow position:chr24:27418227-27418011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):54, 14

               
               
               Conread position:238-459
               
               
               Cow position:chr24:38006835-38006614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):55, 78

               
               
               Conread position:258-458
               
               
               Cow position:chr24:16895239-16895038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):34, 59

               
               
               Conread position:260-453
               
               
               Cow position:chr24:38841516-38841325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):32, 56

               
               
               Conread position:260-466
               
               
               Cow position:chr24:19186849-19187047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):105, 29

               
               
               Conread position:261-457
               
               
               Cow position:chr24:18614893-18615101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 166

               
               
               Conread position:324-464
               
               
               Cow position:chr24:22999977-23000124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:324-466
               
               
               Cow position:chr24:28355726-28355580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):58, 108

               
               
               Conread position:366-461
               
               
               Cow position:chr24:32818294-32818197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:1-288
               
               
               Cow position:chr25:40657955-40658245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):57, 82

               
               
               Conread position:2-343
               
               
               Cow position:chr25:31733074-31732733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 7

               
               
               Conread position:5-283
               
               
               Cow position:chr25:18885820-18885544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):137, 187

               
               
               Conread position:5-288
               
               
               Cow position:chr25:26757091-26757380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):58, 168

               
               
               Conread position:5-356
               
               
               Cow position:chr25:1735650-1735306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 73

               
               
               Conread position:5-356
               
               
               Cow position:chr25:5792142-5791786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:248
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):49, 25

               
               
               Conread position:5-356
               
               
               Cow position:chr25:17354039-17354381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 185

               
               
               Conread position:5-370
               
               
               Cow position:chr25:9396115-9396474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):221, 102

               
               
               Conread position:5-373
               
               
               Cow position:chr25:25754335-25753965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 77

               
               
               Conread position:5-373
               
               
               Cow position:chr25:36779156-36779532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):122, 110

               
               
               Conread position:5-374
               
               
               Cow position:chr25:25827121-25827503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 106

               
               
               Conread position:5-387
               
               
               Cow position:chr25:6891867-6891489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 180

               
               
               Conread position:5-430
               
               
               Cow position:chr25:5756351-5756780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:278
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):80, 262

               
               
               Conread position:5-436
               
               
               Cow position:chr25:9349597-9349181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 163

               
               
               Conread position:5-440
               
               
               Cow position:chr25:11437142-11436701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 198

               
               
               Conread position:5-445
               
               
               Cow position:chr25:41363479-41363041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:284
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):163, 41

               
               
               Conread position:5-453
               
               
               Cow position:chr25:10643648-10643190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 57

               
               
               Conread position:5-457
               
               
               Cow position:chr25:21193283-21192817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-457
               
               
               Cow position:chr25:26654568-26655030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 15

               
               
               Conread position:5-459
               
               
               Cow position:chr25:2414497-2414923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:307
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):291, 63

               
               
               Conread position:5-460
               
               
               Cow position:chr25:7216482-7216950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 230

               
               
               Conread position:5-460
               
               
               Cow position:chr25:11585173-11585646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 20

               
               
               Conread position:5-460
               
               
               Cow position:chr25:20007781-20008259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:340
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):59, 193

               
               
               Conread position:5-460
               
               
               Cow position:chr25:22530947-22531407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 165

               
               
               Conread position:5-461
               
               
               Cow position:chr25:8120437-8120909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-466
               
               
               Cow position:chr25:24572732-24573199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 178

               
               
               Conread position:5-466
               
               
               Cow position:chr25:26087176-26087655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:5-472
               
               
               Cow position:chr25:17658275-17658749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-479
               
               
               Cow position:chr25:13569507-13569032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 190

               
               
               Conread position:6-290
               
               
               Cow position:chr25:27621743-27622034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):75, 111

               
               
               Conread position:6-292
               
               
               Cow position:chr25:26618114-26618405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:6-311
               
               
               Cow position:chr25:26111943-26112237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):121, 85

               
               
               Conread position:6-358
               
               
               Cow position:chr25:5514670-5515030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 59

               
               
               Conread position:6-385
               
               
               Cow position:chr25:20394868-20395235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):283, 93

               
               
               Conread position:6-435
               
               
               Cow position:chr25:6464367-6463930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 43

               
               
               Conread position:6-440
               
               
               Cow position:chr25:4680901-4681332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:290
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):185, 31

               
               
               Conread position:6-446
               
               
               Cow position:chr25:11662154-11661705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 67

               
               
               Conread position:6-446
               
               
               Cow position:chr25:30319788-30319341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 332

               
               
               Conread position:6-452
               
               
               Cow position:chr25:1837904-1838360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 61

               
               
               Conread position:6-460
               
               
               Cow position:chr25:21245945-21245478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:7-445
               
               
               Cow position:chr25:38981769-38982204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 116

               
               
               Conread position:7-466
               
               
               Cow position:chr25:14834006-14833531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:324
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):68, 33

               
               
               Conread position:8-434
               
               
               Cow position:chr25:41351539-41351119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:274
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):120, 22

               
               
               Conread position:9-443
               
               
               Cow position:chr25:21191154-21191598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 59

               
               
               Conread position:9-460
               
               
               Cow position:chr25:14791420-14791881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 59

               
               
               Conread position:10-436
               
               
               Cow position:chr25:36037125-36036677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 226

               
               
               Conread position:13-370
               
               
               Cow position:chr25:2046883-2046530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):27, 34

               
               
               Conread position:14-373
               
               
               Cow position:chr25:9957365-9957007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 169

               
               
               Conread position:14-465
               
               
               Cow position:chr25:35347572-35348042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:317
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):60, 16

               
               
               Conread position:16-445
               
               
               Cow position:chr25:18564166-18564597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 164

               
               
               Conread position:17-458
               
               
               Cow position:chr25:2498935-2499394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:296
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:19-453
               
               
               Cow position:chr25:12097515-12097953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 56

               
               
               Conread position:20-373
               
               
               Cow position:chr25:6886293-6885940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):108, 52

               
               
               Conread position:24-374
               
               
               Cow position:chr25:12239458-12239115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):235, 62

               
               
               Conread position:27-289
               
               
               Cow position:chr25:41364297-41364041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):101, 158

               
               
               Conread position:32-451
               
               
               Cow position:chr25:22241693-22242080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:278
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):201, 12

               
               
               Conread position:33-449
               
               
               Cow position:chr25:24136748-24136326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 42

               
               
               Conread position:37-285
               
               
               Cow position:chr25:8347201-8347449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):91, 154

               
               
               Conread position:45-474
               
               
               Cow position:chr25:36761805-36762244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 234

               
               
               Conread position:46-367
               
               
               Cow position:chr25:15319620-15319945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 69

               
               
               Conread position:46-465
               
               
               Cow position:chr25:6474399-6473954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:48-465
               
               
               Cow position:chr25:16319423-16319009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:297
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):80, 38

               
               
               Conread position:58-460
               
               
               Cow position:chr25:21895174-21894758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 50

               
               
               Conread position:62-407
               
               
               Cow position:chr25:20348575-20348942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:62-458
               
               
               Cow position:chr25:20023682-20023262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:284
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):26, 172

               
               
               Conread position:67-306
               
               
               Cow position:chr25:10366030-10365788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):18, 27

               
               
               Conread position:70-454
               
               
               Cow position:chr25:36081600-36081995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:72-373
               
               
               Cow position:chr25:36535705-36535402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):58, 45

               
               
               Conread position:72-456
               
               
               Cow position:chr25:14512843-14513237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:271
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):60, 41

               
               
               Conread position:76-460
               
               
               Cow position:chr25:24452437-24452029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:283
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):75, 31

               
               
               Conread position:77-358
               
               
               Cow position:chr25:12824283-12824001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):9, 106

               
               
               Conread position:77-458
               
               
               Cow position:chr25:22203958-22203574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 218

               
               
               Conread position:78-353
               
               
               Cow position:chr25:13642583-13642301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):55, 241

               
               
               Conread position:78-355
               
               
               Cow position:chr25:35332906-35333172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):69, 37

               
               
               Conread position:78-445
               
               
               Cow position:chr25:21266739-21267098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 152

               
               
               Conread position:78-460
               
               
               Cow position:chr25:22297284-22296908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:269
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):50, 94

               
               
               Conread position:78-460
               
               
               Cow position:chr25:23917575-23917968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:265
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):92, 48

               
               
               Conread position:78-460
               
               
               Cow position:chr25:28188215-28187819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 37

               
               
               Conread position:79-475
               
               
               Cow position:chr25:9990355-9989970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 7

               
               
               Conread position:80-457
               
               
               Cow position:chr25:18988112-18988506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):48, 21

               
               
               Conread position:82-459
               
               
               Cow position:chr25:20785844-20785460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):212, 42

               
               
               Conread position:82-466
               
               
               Cow position:chr25:7306035-7306427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:274
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):51, 156

               
               
               Conread position:84-227
               
               
               Cow position:chr25:13566584-13566730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):47, 30

               
               
               Conread position:84-358
               
               
               Cow position:chr25:9961439-9961157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:84-434
               
               
               Cow position:chr25:17566326-17566688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):49, 107

               
               
               Conread position:84-466
               
               
               Cow position:chr25:26700779-26701157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 28

               
               
               Conread position:84-466
               
               
               Cow position:chr25:38957717-38958089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):107, 30

               
               
               Conread position:85-459
               
               
               Cow position:chr25:31230483-31230119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):284, 43

               
               
               Conread position:86-285
               
               
               Cow position:chr25:17712275-17712477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):42, 106

               
               
               Conread position:87-353
               
               
               Cow position:chr25:16001779-16001514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):27, 96

               
               
               Conread position:87-460
               
               
               Cow position:chr25:7581685-7581300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:87-466
               
               
               Cow position:chr25:9269115-9269477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:269
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:88-460
               
               
               Cow position:chr25:15254588-15254222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:258
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):40, 138

               
               
               Conread position:91-306
               
               
               Cow position:chr25:36026753-36026973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:92-358
               
               
               Cow position:chr25:4002543-4002818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):35, 221

               
               
               Conread position:93-466
               
               
               Cow position:chr25:24669682-24669315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 20

               
               
               Conread position:98-448
               
               
               Cow position:chr25:18265917-18266278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):30, 15

               
               
               Conread position:103-303
               
               
               Cow position:chr25:12899508-12899717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):14, 42

               
               
               Conread position:107-457
               
               
               Cow position:chr25:61422-61773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 17

               
               
               Conread position:109-445
               
               
               Cow position:chr25:12840954-12840607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):23, 65

               
               
               Conread position:117-460
               
               
               Cow position:chr25:10218279-10217923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):11, 176

               
               
               Conread position:118-460
               
               
               Cow position:chr25:34169727-34170072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):10, 108

               
               
               Conread position:129-445
               
               
               Cow position:chr25:34768935-34768623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):179, 75

               
               
               Conread position:130-401
               
               
               Cow position:chr25:38425151-38425428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):162, 112

               
               
               Conread position:130-452
               
               
               Cow position:chr25:26090026-26089695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):162, 9

               
               
               Conread position:131-450
               
               
               Cow position:chr25:20133530-20133199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):11, 99

               
               
               Conread position:131-465
               
               
               Cow position:chr25:2624591-2624930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):12, 99

               
               
               Conread position:132-457
               
               
               Cow position:chr25:12319550-12319230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):164, 47

               
               
               Conread position:138-431
               
               
               Cow position:chr25:16714480-16714173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):99, 59

               
               
               Conread position:138-460
               
               
               Cow position:chr25:13272363-13272698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):50, 91

               
               
               Conread position:141-444
               
               
               Cow position:chr25:13294703-13294986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 22

               
               
               Conread position:141-466
               
               
               Cow position:chr25:17704546-17704876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):48, 137

               
               
               Conread position:148-446
               
               
               Cow position:chr25:25861556-25861239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 93

               
               
               Conread position:149-370
               
               
               Cow position:chr25:12755686-12755459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):84, 22

               
               
               Conread position:151-450
               
               
               Cow position:chr25:13672195-13672519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:152-414
               
               
               Cow position:chr25:17342257-17342538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:155-453
               
               
               Cow position:chr25:18905692-18906006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:155-460
               
               
               Cow position:chr25:11315722-11316027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):74, 16

               
               
               Conread position:157-358
               
               
               Cow position:chr25:23323015-23323216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):34, 153

               
               
               Conread position:166-458
               
               
               Cow position:chr25:24651630-24651332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 125

               
               
               Conread position:166-458
               
               
               Cow position:chr25:32277777-32277483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):103, 192

               
               
               Conread position:166-460
               
               
               Cow position:chr25:36017361-36017659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):124, 25

               
               
               Conread position:169-385
               
               
               Cow position:chr25:11318835-11319046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):73, 126

               
               
               Conread position:171-445
               
               
               Cow position:chr25:18894892-18894615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):128, 53

               
               
               Conread position:177-453
               
               
               Cow position:chr25:30462466-30462190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):48, 111

               
               
               Conread position:178-445
               
               
               Cow position:chr25:26679062-26679337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):118, 47

               
               
               Conread position:178-460
               
               
               Cow position:chr25:9002509-9002797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):192, 116

               
               
               Conread position:181-418
               
               
               Cow position:chr25:19317095-19317349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):10, 29

               
               
               Conread position:181-466
               
               
               Cow position:chr25:21893175-21893471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):111, 28

               
               
               Conread position:185-435
               
               
               Cow position:chr25:5920778-5921045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:186-459
               
               
               Cow position:chr25:7380998-7380711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:187-465
               
               
               Cow position:chr25:5474383-5474099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):45, 119

               
               
               Conread position:191-444
               
               
               Cow position:chr25:8961621-8961880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):123, 34

               
               
               Conread position:191-457
               
               
               Cow position:chr25:23779478-23779207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:194-447
               
               
               Cow position:chr25:6687800-6688058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):98, 27

               
               
               Conread position:194-460
               
               
               Cow position:chr25:30618916-30619191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):19, 15

               
               
               Conread position:197-448
               
               
               Cow position:chr25:22751156-22750892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):84, 36

               
               
               Conread position:212-461
               
               
               Cow position:chr25:14157490-14157753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:212-469
               
               
               Cow position:chr25:18202058-18201794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):80, 114

               
               
               Conread position:212-469
               
               
               Cow position:chr25:24203124-24202877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):102, 25

               
               
               Conread position:236-471
               
               
               Cow position:chr25:36555798-36555549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:238-444
               
               
               Cow position:chr25:30816779-30816999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:238-445
               
               
               Cow position:chr25:17119638-17119853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:238-456
               
               
               Cow position:chr25:12252919-12252687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:238-460
               
               
               Cow position:chr25:1824202-1823970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):56, 39

               
               
               Conread position:244-460
               
               
               Cow position:chr25:13443514-13443284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):48, 95

               
               
               Conread position:245-445
               
               
               Cow position:chr25:30449942-30450143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 141

               
               
               Conread position:249-460
               
               
               Cow position:chr25:25716557-25716770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:251-453
               
               
               Cow position:chr25:36120408-36120617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):21, 61

               
               
               Conread position:257-452
               
               
               Cow position:chr25:23817936-23817721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:258-445
               
               
               Cow position:chr25:26051814-26052013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):35, 191

               
               
               Conread position:259-459
               
               
               Cow position:chr25:12806958-12807163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):37, 81

               
               
               Conread position:296-466
               
               
               Cow position:chr25:17403438-17403613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):74, 33

               
               
               Conread position:324-464
               
               
               Cow position:chr25:15218118-15218262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:338-466
               
               
               Cow position:chr25:5922707-5922574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:2-444
               
               
               Cow position:chr26:3072285-3071848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):126, 11

               
               
               Conread position:5-260
               
               
               Cow position:chr26:30752185-30751928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:5-283
               
               
               Cow position:chr26:26671063-26670789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 123

               
               
               Conread position:5-287
               
               
               Cow position:chr26:19447756-19447463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):79, 55

               
               
               Conread position:5-371
               
               
               Cow position:chr26:17401442-17401811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:251
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:5-426
               
               
               Cow position:chr26:29353833-29353402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:288
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):108, 155

               
               
               Conread position:5-445
               
               
               Cow position:chr26:13021471-13021015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 226

               
               
               Conread position:5-448
               
               
               Cow position:chr26:34108449-34108890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 69

               
               
               Conread position:5-450
               
               
               Cow position:chr26:3706482-3706926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 64

               
               
               Conread position:5-453
               
               
               Cow position:chr26:32553360-32553829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 200

               
               
               Conread position:5-457
               
               
               Cow position:chr26:33011987-33011529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 119

               
               
               Conread position:5-459
               
               
               Cow position:chr26:8307834-8307384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:313
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 120

               
               
               Conread position:5-460
               
               
               Cow position:chr26:20292003-20291545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 219

               
               
               Conread position:5-466
               
               
               Cow position:chr26:32670815-32670343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 104

               
               
               Conread position:5-469
               
               
               Cow position:chr26:8700371-8699894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 209

               
               
               Conread position:6-290
               
               
               Cow position:chr26:7961312-7961596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):34, 29

               
               
               Conread position:6-290
               
               
               Cow position:chr26:8034537-8034830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):44, 49

               
               
               Conread position:6-467
               
               
               Cow position:chr26:8352639-8353121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:6-481
               
               
               Cow position:chr26:32776826-32776345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 143

               
               
               Conread position:7-438
               
               
               Cow position:chr26:32955939-32955507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:296
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):121, 53

               
               
               Conread position:9-290
               
               
               Cow position:chr26:30806829-30806541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:9-357
               
               
               Cow position:chr26:23926295-23925953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 78

               
               
               Conread position:9-367
               
               
               Cow position:chr26:12807832-12807483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 78

               
               
               Conread position:9-458
               
               
               Cow position:chr26:2531491-2531047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 79

               
               
               Conread position:13-290
               
               
               Cow position:chr26:18231056-18231331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):115, 29

               
               
               Conread position:13-342
               
               
               Cow position:chr26:7525791-7525454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):54, 222

               
               
               Conread position:14-436
               
               
               Cow position:chr26:25393721-25394160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 21

               
               
               Conread position:14-460
               
               
               Cow position:chr26:4585522-4585068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 267

               
               
               Conread position:17-445
               
               
               Cow position:chr26:25737162-25737581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 314

               
               
               Conread position:24-466
               
               
               Cow position:chr26:19459373-19459847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:328
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):26, 21

               
               
               Conread position:33-457
               
               
               Cow position:chr26:18825566-18825141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:290
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):281, 151

               
               
               Conread position:36-460
               
               
               Cow position:chr26:11263347-11263784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 285

               
               
               Conread position:37-398
               
               
               Cow position:chr26:6188007-6188381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:263
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):91, 150

               
               
               Conread position:37-465
               
               
               Cow position:chr26:9491642-9492073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):91, 25

               
               
               Conread position:38-446
               
               
               Cow position:chr26:16549695-16550119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 30

               
               
               Conread position:39-442
               
               
               Cow position:chr26:5246776-5246351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 154

               
               
               Conread position:49-352
               
               
               Cow position:chr26:32013353-32013662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 134

               
               
               Conread position:57-290
               
               
               Cow position:chr26:2029822-2029577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):64, 199

               
               
               Conread position:57-445
               
               
               Cow position:chr26:33567310-33566914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 57

               
               
               Conread position:62-450
               
               
               Cow position:chr26:32058389-32058782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):66, 53

               
               
               Conread position:64-460
               
               
               Cow position:chr26:20260327-20260729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):19, 92

               
               
               Conread position:67-306
               
               
               Cow position:chr26:32026619-32026383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):94, 50

               
               
               Conread position:74-466
               
               
               Cow position:chr26:32898123-32897724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:278
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):54, 152

               
               
               Conread position:77-358
               
               
               Cow position:chr26:14958262-14957984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):117, 11

               
               
               Conread position:77-431
               
               
               Cow position:chr26:7103286-7102929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):42, 154

               
               
               Conread position:77-446
               
               
               Cow position:chr26:27594394-27594746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):296, 36

               
               
               Conread position:77-453
               
               
               Cow position:chr26:798547-798159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:263
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):41, 178

               
               
               Conread position:77-458
               
               
               Cow position:chr26:26294437-26294053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:268
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):51, 71

               
               
               Conread position:77-460
               
               
               Cow position:chr26:16921690-16922085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 139

               
               
               Conread position:77-486
               
               
               Cow position:chr26:613922-613500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 101

               
               
               Conread position:78-457
               
               
               Cow position:chr26:9104529-9104138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 93

               
               
               Conread position:78-460
               
               
               Cow position:chr26:8810884-8811272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 113

               
               
               Conread position:78-460
               
               
               Cow position:chr26:23097424-23097049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 10

               
               
               Conread position:78-465
               
               
               Cow position:chr26:13801863-13802263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:266
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):50, 136

               
               
               Conread position:78-466
               
               
               Cow position:chr26:4854289-4854699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):50, 104

               
               
               Conread position:80-386
               
               
               Cow position:chr26:10768147-10767846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):9, 34

               
               
               Conread position:80-459
               
               
               Cow position:chr26:8746081-8745699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):28, 183

               
               
               Conread position:81-401
               
               
               Cow position:chr26:21991871-21992188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:81-460
               
               
               Cow position:chr26:34314432-34314837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:274
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:82-365
               
               
               Cow position:chr26:18692192-18692463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):210, 11

               
               
               Conread position:87-287
               
               
               Cow position:chr26:6793702-6793904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:87-354
               
               
               Cow position:chr26:9853842-9853576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):41, 70

               
               
               Conread position:88-314
               
               
               Cow position:chr26:21351450-21351680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):40, 33

               
               
               Conread position:88-356
               
               
               Cow position:chr26:32688191-32688469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):40, 126

               
               
               Conread position:88-407
               
               
               Cow position:chr26:30034643-30034326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):39, 113

               
               
               Conread position:89-369
               
               
               Cow position:chr26:31779237-31779528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):48, 174

               
               
               Conread position:89-465
               
               
               Cow position:chr26:14292930-14293303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:91-466
               
               
               Cow position:chr26:17057448-17057830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 22

               
               
               Conread position:94-466
               
               
               Cow position:chr26:21242872-21243242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 19

               
               
               Conread position:95-460
               
               
               Cow position:chr26:19774534-19774153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 18

               
               
               Conread position:99-445
               
               
               Cow position:chr26:33744662-33745029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:103-460
               
               
               Cow position:chr26:15200739-15200371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 10

               
               
               Conread position:104-460
               
               
               Cow position:chr26:30254856-30254489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:256
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):24, 213

               
               
               Conread position:105-463
               
               
               Cow position:chr26:21637258-21636891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):22, 125

               
               
               Conread position:107-291
               
               
               Cow position:chr26:5988940-5988761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):21, 78

               
               
               Conread position:107-446
               
               
               Cow position:chr26:8642739-8643072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:245
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):25, 52

               
               
               Conread position:116-465
               
               
               Cow position:chr26:25526036-25526401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:249
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):12, 91

               
               
               Conread position:126-445
               
               
               Cow position:chr26:10764020-10764341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):68, 111

               
               
               Conread position:129-460
               
               
               Cow position:chr26:31605211-31605551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):163, 42

               
               
               Conread position:132-368
               
               
               Cow position:chr26:20013286-20013523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):110, 54

               
               
               Conread position:132-465
               
               
               Cow position:chr26:22892633-22892293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):78, 28

               
               
               Conread position:134-453
               
               
               Cow position:chr26:32672631-32672289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):54, 195

               
               
               Conread position:137-356
               
               
               Cow position:chr26:27761836-27761623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:141-373
               
               
               Cow position:chr26:6723920-6724155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):93, 59

               
               
               Conread position:141-457
               
               
               Cow position:chr26:6252663-6252998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 285

               
               
               Conread position:143-437
               
               
               Cow position:chr26:4167538-4167232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):93, 59

               
               
               Conread position:144-449
               
               
               Cow position:chr26:32866069-32865758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):151, 77

               
               
               Conread position:147-458
               
               
               Cow position:chr26:34060155-34060476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):44, 23

               
               
               Conread position:147-460
               
               
               Cow position:chr26:23315588-23315919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):44, 82

               
               
               Conread position:148-489
               
               
               Cow position:chr26:22354236-22354587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):144, 171

               
               
               Conread position:151-416
               
               
               Cow position:chr26:25299422-25299700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:165-485
               
               
               Cow position:chr26:14578166-14578491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):60, 87

               
               
               Conread position:166-458
               
               
               Cow position:chr26:22249636-22249340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):126, 5

               
               
               Conread position:181-464
               
               
               Cow position:chr26:22349156-22348863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 103

               
               
               Conread position:186-463
               
               
               Cow position:chr26:15211666-15211952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:186-474
               
               
               Cow position:chr26:31633587-31633887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):40, 129

               
               
               Conread position:192-489
               
               
               Cow position:chr26:22152093-22152402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):41, 5

               
               
               Conread position:194-482
               
               
               Cow position:chr26:7315233-7314941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):37, 44

               
               
               Conread position:198-453
               
               
               Cow position:chr26:12238150-12237891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:198-466
               
               
               Cow position:chr26:33253448-33253161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:212-451
               
               
               Cow position:chr26:14905924-14905672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 30

               
               
               Conread position:212-453
               
               
               Cow position:chr26:12893534-12893290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):80, 22

               
               
               Conread position:212-456
               
               
               Cow position:chr26:32834687-32834438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):81, 100

               
               
               Conread position:218-460
               
               
               Cow position:chr26:2739565-2739310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):76, 15

               
               
               Conread position:222-453
               
               
               Cow position:chr26:20551037-20551282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):67, 55

               
               
               Conread position:225-469
               
               
               Cow position:chr26:4807461-4807708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 87

               
               
               Conread position:226-460
               
               
               Cow position:chr26:32120542-32120773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 15

               
               
               Conread position:241-457
               
               
               Cow position:chr26:6864931-6865165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):51, 219

               
               
               Conread position:247-449
               
               
               Cow position:chr26:34106320-34106527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):45, 61

               
               
               Conread position:254-472
               
               
               Cow position:chr26:10965661-10965435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):114, 40

               
               
               Conread position:255-445
               
               
               Cow position:chr26:23111971-23112164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:258-479
               
               
               Cow position:chr26:9839606-9839385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):34, 10

               
               
               Conread position:261-475
               
               
               Cow position:chr26:18529715-18529938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 126

               
               
               Conread position:278-460
               
               
               Cow position:chr26:24453954-24453766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):16, 39

               
               
               Conread position:317-460
               
               
               Cow position:chr26:16435662-16435508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:329-466
               
               
               Cow position:chr26:16796200-16796057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:2-459
               
               
               Cow position:chr27:19388313-19387847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 8

               
               
               Conread position:2-460
               
               
               Cow position:chr27:29831392-29831875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 7

               
               
               Conread position:2-466
               
               
               Cow position:chr27:22418471-22418947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 7

               
               
               Conread position:2-484
               
               
               Cow position:chr27:10992663-10992160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:338
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):94, 7

               
               
               Conread position:5-228
               
               
               Cow position:chr27:2900947-2901175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:5-230
               
               
               Cow position:chr27:16099723-16099957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:5-290
               
               
               Cow position:chr27:16620282-16619997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 63

               
               
               Conread position:5-306
               
               
               Cow position:chr27:23454856-23455165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 77

               
               
               Conread position:5-355
               
               
               Cow position:chr27:11413009-11412669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 16

               
               
               Conread position:5-368
               
               
               Cow position:chr27:19931447-19931082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):169, 245

               
               
               Conread position:5-400
               
               
               Cow position:chr27:9090507-9090902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 223

               
               
               Conread position:5-425
               
               
               Cow position:chr27:30868446-30868877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 108

               
               
               Conread position:5-439
               
               
               Cow position:chr27:4805615-4806050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):103, 44

               
               
               Conread position:5-440
               
               
               Cow position:chr27:11435037-11435472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 40

               
               
               Conread position:5-442
               
               
               Cow position:chr27:23632890-23632446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 16

               
               
               Conread position:5-446
               
               
               Cow position:chr27:21977843-21978296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:299
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 177

               
               
               Conread position:5-449
               
               
               Cow position:chr27:27049626-27050068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):123, 40

               
               
               Conread position:5-451
               
               
               Cow position:chr27:21393213-21393671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:5-452
               
               
               Cow position:chr27:8629580-8630035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 132

               
               
               Conread position:5-453
               
               
               Cow position:chr27:19718210-19717750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 53

               
               
               Conread position:5-453
               
               
               Cow position:chr27:25411221-25411675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 184

               
               
               Conread position:5-456
               
               
               Cow position:chr27:1636653-1637103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:305
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):157, 30

               
               
               Conread position:5-456
               
               
               Cow position:chr27:27064150-27064609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 55

               
               
               Conread position:5-457
               
               
               Cow position:chr27:4673309-4672843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 62

               
               
               Conread position:5-457
               
               
               Cow position:chr27:30583031-30582565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:310
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):123, 83

               
               
               Conread position:5-458
               
               
               Cow position:chr27:8961975-8962420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 156

               
               
               Conread position:5-458
               
               
               Cow position:chr27:22171592-22171130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 25

               
               
               Conread position:5-459
               
               
               Cow position:chr27:15866515-15866047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 88

               
               
               Conread position:5-460
               
               
               Cow position:chr27:17397161-17397626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 76

               
               
               Conread position:5-464
               
               
               Cow position:chr27:15315783-15315341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 96

               
               
               Conread position:5-466
               
               
               Cow position:chr27:1768344-1768805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 56

               
               
               Conread position:5-466
               
               
               Cow position:chr27:20283917-20283461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:324
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:5-491
               
               
               Cow position:chr27:27038546-27039039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 114

               
               
               Conread position:6-356
               
               
               Cow position:chr27:21350722-21351082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:6-368
               
               
               Cow position:chr27:27040890-27040530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):113, 40

               
               
               Conread position:6-370
               
               
               Cow position:chr27:26223976-26224346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 191

               
               
               Conread position:6-373
               
               
               Cow position:chr27:30374261-30374645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:262
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):71, 291

               
               
               Conread position:6-440
               
               
               Cow position:chr27:1123310-1122880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:297
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):122, 16

               
               
               Conread position:6-446
               
               
               Cow position:chr27:22330367-22330824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:300
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):45, 117

               
               
               Conread position:6-449
               
               
               Cow position:chr27:30177275-30177712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:288
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):81, 198

               
               
               Conread position:6-450
               
               
               Cow position:chr27:26412965-26413416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 62

               
               
               Conread position:6-453
               
               
               Cow position:chr27:1353888-1353418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 120

               
               
               Conread position:6-457
               
               
               Cow position:chr27:26959331-26959784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):124, 21

               
               
               Conread position:6-460
               
               
               Cow position:chr27:24227500-24227971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 199

               
               
               Conread position:6-460
               
               
               Cow position:chr27:26807273-26807736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:312
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):25, 14

               
               
               Conread position:6-466
               
               
               Cow position:chr27:17473115-17472633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 27

               
               
               Conread position:6-469
               
               
               Cow position:chr27:27019810-27020278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 62

               
               
               Conread position:6-484
               
               
               Cow position:chr27:8353757-8353282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:307
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):185, 69

               
               
               Conread position:7-466
               
               
               Cow position:chr27:299091-299559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 223

               
               
               Conread position:9-339
               
               
               Cow position:chr27:815655-815321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 165

               
               
               Conread position:9-407
               
               
               Cow position:chr27:22426539-22426951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 119

               
               
               Conread position:9-445
               
               
               Cow position:chr27:13876018-13875579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 90

               
               
               Conread position:9-446
               
               
               Cow position:chr27:15925625-15925188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:303
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):32, 78

               
               
               Conread position:9-451
               
               
               Cow position:chr27:12246936-12246490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 59

               
               
               Conread position:10-399
               
               
               Cow position:chr27:24999447-24999851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 76

               
               
               Conread position:10-478
               
               
               Cow position:chr27:20641054-20641522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:312
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):73, 155

               
               
               Conread position:12-283
               
               
               Cow position:chr27:13409881-13410158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):116, 187

               
               
               Conread position:13-370
               
               
               Cow position:chr27:732849-732499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):197, 55

               
               
               Conread position:13-451
               
               
               Cow position:chr27:26581160-26581599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:301
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):95, 153

               
               
               Conread position:13-459
               
               
               Cow position:chr27:23882079-23882540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 140

               
               
               Conread position:13-460
               
               
               Cow position:chr27:28931503-28931973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 56

               
               
               Conread position:13-469
               
               
               Cow position:chr27:23128740-23128287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 78

               
               
               Conread position:14-414
               
               
               Cow position:chr27:29400102-29399700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):20, 58

               
               
               Conread position:14-431
               
               
               Cow position:chr27:26427843-26428275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:14-457
               
               
               Cow position:chr27:8942407-8942858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:17-460
               
               
               Cow position:chr27:22723431-22723866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 26

               
               
               Conread position:26-458
               
               
               Cow position:chr27:19589748-19589303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:304
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):102, 70

               
               
               Conread position:26-465
               
               
               Cow position:chr27:31219513-31219084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:294
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):88, 52

               
               
               Conread position:27-403
               
               
               Cow position:chr27:12429684-12429292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 90

               
               
               Conread position:30-459
               
               
               Cow position:chr27:30406762-30407209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 270

               
               
               Conread position:31-453
               
               
               Cow position:chr27:20067719-20068142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:290
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):97, 49

               
               
               Conread position:32-356
               
               
               Cow position:chr27:14902383-14902713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:33-473
               
               
               Cow position:chr27:6550717-6550277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 165

               
               
               Conread position:37-466
               
               
               Cow position:chr27:7412645-7412211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 191

               
               
               Conread position:38-460
               
               
               Cow position:chr27:23483486-23483054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 139

               
               
               Conread position:39-466
               
               
               Cow position:chr27:2957664-2957234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 36

               
               
               Conread position:48-280
               
               
               Cow position:chr27:26436623-26436862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):85, 65

               
               
               Conread position:48-444
               
               
               Cow position:chr27:26508910-26509309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 69

               
               
               Conread position:49-461
               
               
               Cow position:chr27:1290618-1291023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 79

               
               
               Conread position:50-351
               
               
               Cow position:chr27:26398010-26398313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 63

               
               
               Conread position:54-445
               
               
               Cow position:chr27:28518530-28518139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 59

               
               
               Conread position:57-452
               
               
               Cow position:chr27:16284715-16284310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 57

               
               
               Conread position:57-457
               
               
               Cow position:chr27:10980106-10979694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 197

               
               
               Conread position:59-445
               
               
               Cow position:chr27:29493677-29494057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):73, 54

               
               
               Conread position:59-460
               
               
               Cow position:chr27:24738556-24738971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):23, 111

               
               
               Conread position:60-459
               
               
               Cow position:chr27:11815520-11815920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:268
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):68, 166

               
               
               Conread position:62-431
               
               
               Cow position:chr27:6500302-6499918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:67-460
               
               
               Cow position:chr27:7934931-7935329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):61, 124

               
               
               Conread position:72-453
               
               
               Cow position:chr27:23554096-23554493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:72-460
               
               
               Cow position:chr27:20796011-20795619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:276
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):56, 94

               
               
               Conread position:77-280
               
               
               Cow position:chr27:22179575-22179775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):51, 135

               
               
               Conread position:77-289
               
               
               Cow position:chr27:19577896-19577684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):62, 36

               
               
               Conread position:77-367
               
               
               Cow position:chr27:6523268-6522973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):51, 225

               
               
               Conread position:77-446
               
               
               Cow position:chr27:10307073-10307455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 125

               
               
               Conread position:77-457
               
               
               Cow position:chr27:30765254-30764867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):51, 105

               
               
               Conread position:77-460
               
               
               Cow position:chr27:19661165-19660759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):42, 86

               
               
               Conread position:77-466
               
               
               Cow position:chr27:12596979-12596599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 41

               
               
               Conread position:78-358
               
               
               Cow position:chr27:28038116-28038401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):50, 257

               
               
               Conread position:78-449
               
               
               Cow position:chr27:4812656-4813041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):49, 35

               
               
               Conread position:78-453
               
               
               Cow position:chr27:4835385-4835772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):11, 153

               
               
               Conread position:78-459
               
               
               Cow position:chr27:2592762-2592371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:80-354
               
               
               Cow position:chr27:27259827-27259556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):48, 41

               
               
               Conread position:80-457
               
               
               Cow position:chr27:30354126-30354511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:265
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:82-290
               
               
               Cow position:chr27:22498770-22498566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 55

               
               
               Conread position:82-487
               
               
               Cow position:chr27:707164-706749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:276
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:83-373
               
               
               Cow position:chr27:2682927-2683222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):44, 99

               
               
               Conread position:84-290
               
               
               Cow position:chr27:22771973-22771760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:84-459
               
               
               Cow position:chr27:27640777-27641181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:286
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):44, 29

               
               
               Conread position:84-471
               
               
               Cow position:chr27:18558579-18558178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:85-469
               
               
               Cow position:chr27:15668553-15668952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:260
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 28

               
               
               Conread position:86-290
               
               
               Cow position:chr27:16871706-16871904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):156, 29

               
               
               Conread position:86-459
               
               
               Cow position:chr27:22454565-22454947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 99

               
               
               Conread position:88-460
               
               
               Cow position:chr27:30359606-30359235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 52

               
               
               Conread position:90-456
               
               
               Cow position:chr27:16478139-16478504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):206, 45

               
               
               Conread position:90-458
               
               
               Cow position:chr27:22547197-22547565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):38, 24

               
               
               Conread position:91-354
               
               
               Cow position:chr27:29283203-29283466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):37, 5

               
               
               Conread position:92-460
               
               
               Cow position:chr27:25277342-25276972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 7

               
               
               Conread position:93-469
               
               
               Cow position:chr27:30915207-30914829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:263
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):40, 8

               
               
               Conread position:94-443
               
               
               Cow position:chr27:19685509-19685868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):38, 91

               
               
               Conread position:95-453
               
               
               Cow position:chr27:19546300-19546677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):90, 31

               
               
               Conread position:96-290
               
               
               Cow position:chr27:27055781-27055583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 134

               
               
               Conread position:96-460
               
               
               Cow position:chr27:20354783-20354429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:258
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):32, 76

               
               
               Conread position:97-445
               
               
               Cow position:chr27:27003079-27003415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):31, 77

               
               
               Conread position:100-280
               
               
               Cow position:chr27:18030860-18031044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):92, 26

               
               
               Conread position:100-367
               
               
               Cow position:chr27:21569644-21569911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):28, 110

               
               
               Conread position:101-456
               
               
               Cow position:chr27:28001620-28001980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):27, 41

               
               
               Conread position:107-414
               
               
               Cow position:chr27:18739580-18739251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:107-460
               
               
               Cow position:chr27:16705439-16705079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):21, 146

               
               
               Conread position:108-445
               
               
               Cow position:chr27:27554495-27554834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):19, 38

               
               
               Conread position:109-290
               
               
               Cow position:chr27:20592174-20591990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:113-445
               
               
               Cow position:chr27:29431642-29431312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):78, 15

               
               
               Conread position:117-460
               
               
               Cow position:chr27:30988980-30988626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 90

               
               
               Conread position:118-328
               
               
               Cow position:chr27:27550566-27550773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 92

               
               
               Conread position:118-450
               
               
               Cow position:chr27:13252191-13251853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 106

               
               
               Conread position:129-358
               
               
               Cow position:chr27:22268674-22268439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):62, 100

               
               
               Conread position:129-477
               
               
               Cow position:chr27:29184673-29185023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):165, 35

               
               
               Conread position:130-451
               
               
               Cow position:chr27:15408875-15409199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):166, 95

               
               
               Conread position:130-461
               
               
               Cow position:chr27:9169476-9169811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):162, 269

               
               
               Conread position:131-460
               
               
               Cow position:chr27:15643343-15643001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:242
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):60, 181

               
               
               Conread position:132-307
               
               
               Cow position:chr27:18434304-18434481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 126

               
               
               Conread position:138-460
               
               
               Cow position:chr27:27270377-27270715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):13, 60

               
               
               Conread position:141-452
               
               
               Cow position:chr27:14343310-14343613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):241, 28

               
               
               Conread position:143-437
               
               
               Cow position:chr27:23891093-23890789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):91, 43

               
               
               Conread position:146-445
               
               
               Cow position:chr27:28270994-28271307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:147-459
               
               
               Cow position:chr27:427124-426798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):44, 90

               
               
               Conread position:149-466
               
               
               Cow position:chr27:26489752-26490088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 64

               
               
               Conread position:151-453
               
               
               Cow position:chr27:3306921-3306608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):40, 76

               
               
               Conread position:153-478
               
               
               Cow position:chr27:20247658-20247993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):84, 30

               
               
               Conread position:159-453
               
               
               Cow position:chr27:17331642-17331338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 70

               
               
               Conread position:166-460
               
               
               Cow position:chr27:16103936-16103640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):128, 44

               
               
               Conread position:171-431
               
               
               Cow position:chr27:715630-715358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):121, 175

               
               
               Conread position:171-469
               
               
               Cow position:chr27:8168302-8168611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:181-353
               
               
               Cow position:chr27:4011796-4011622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):52, 128

               
               
               Conread position:183-443
               
               
               Cow position:chr27:28245916-28245648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):106, 130

               
               
               Conread position:183-459
               
               
               Cow position:chr27:26226175-26226460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 26

               
               
               Conread position:183-459
               
               
               Cow position:chr27:27694657-27694939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):111, 29

               
               
               Conread position:184-467
               
               
               Cow position:chr27:29380971-29380674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):55, 5

               
               
               Conread position:185-461
               
               
               Cow position:chr27:24371348-24371070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):107, 40

               
               
               Conread position:187-458
               
               
               Cow position:chr27:31148871-31148592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 14

               
               
               Conread position:190-412
               
               
               Cow position:chr27:26135245-26135023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):102, 20

               
               
               Conread position:191-445
               
               
               Cow position:chr27:7614981-7615237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):68, 58

               
               
               Conread position:196-476
               
               
               Cow position:chr27:12191387-12191672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):185, 132

               
               
               Conread position:213-452
               
               
               Cow position:chr27:22559736-22559987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:216-460
               
               
               Cow position:chr27:15378396-15378645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):80, 9

               
               
               Conread position:224-452
               
               
               Cow position:chr27:6925164-6924919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:225-458
               
               
               Cow position:chr27:16088883-16088635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):67, 212

               
               
               Conread position:227-453
               
               
               Cow position:chr27:16965645-16965412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:238-453
               
               
               Cow position:chr27:31017773-31017990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):51, 73

               
               
               Conread position:238-457
               
               
               Cow position:chr27:20812966-20812736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:238-460
               
               
               Cow position:chr27:20514882-20514651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):53, 66

               
               
               Conread position:238-466
               
               
               Cow position:chr27:22225534-22225773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:238-469
               
               
               Cow position:chr27:26111848-26112096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:244-419
               
               
               Cow position:chr27:21976104-21975922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 62

               
               
               Conread position:254-460
               
               
               Cow position:chr27:22423554-22423343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):38, 10

               
               
               Conread position:258-458
               
               
               Cow position:chr27:17918274-17918483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):34, 61

               
               
               Conread position:258-472
               
               
               Cow position:chr27:29593587-29593814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:260-459
               
               
               Cow position:chr27:17646128-17646337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 188

               
               
               Conread position:264-469
               
               
               Cow position:chr27:14303769-14303554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 48

               
               
               Conread position:325-466
               
               
               Cow position:chr27:18435162-18435313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:347-459
               
               
               Cow position:chr27:22268174-22268056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:2-356
               
               
               Cow position:chr28:8682185-8681818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):126, 7

               
               
               Conread position:2-356
               
               
               Cow position:chr28:12049047-12048688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):86, 11

               
               
               Conread position:2-466
               
               
               Cow position:chr28:11426870-11426404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 7

               
               
               Conread position:5-229
               
               
               Cow position:chr28:30967135-30967358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):121, 129

               
               
               Conread position:5-304
               
               
               Cow position:chr28:16215223-16214934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):287, 121

               
               
               Conread position:5-305
               
               
               Cow position:chr28:11451807-11451493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:5-306
               
               
               Cow position:chr28:13356914-13356604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-339
               
               
               Cow position:chr28:7549394-7549054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-342
               
               
               Cow position:chr28:7590515-7590174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 46

               
               
               Conread position:5-358
               
               
               Cow position:chr28:4022050-4022411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 92

               
               
               Conread position:5-358
               
               
               Cow position:chr28:10879442-10879792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):64, 172

               
               
               Conread position:5-373
               
               
               Cow position:chr28:17287896-17288254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:256
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):127, 55

               
               
               Conread position:5-386
               
               
               Cow position:chr28:18790680-18791070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 57

               
               
               Conread position:5-407
               
               
               Cow position:chr28:25806265-25806653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):287, 56

               
               
               Conread position:5-409
               
               
               Cow position:chr28:21380549-21380963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 88

               
               
               Conread position:5-414
               
               
               Cow position:chr28:13267449-13267876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 52

               
               
               Conread position:5-419
               
               
               Cow position:chr28:5792370-5792800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 57

               
               
               Conread position:5-430
               
               
               Cow position:chr28:2814830-2814406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):123, 30

               
               
               Conread position:5-431
               
               
               Cow position:chr28:11787038-11786613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 72

               
               
               Conread position:5-444
               
               
               Cow position:chr28:21598585-21598133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 108

               
               
               Conread position:5-445
               
               
               Cow position:chr28:11585539-11585084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 28

               
               
               Conread position:5-445
               
               
               Cow position:chr28:33163789-33163346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:305
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 39

               
               
               Conread position:5-446
               
               
               Cow position:chr28:8347390-8347850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 187

               
               
               Conread position:5-450
               
               
               Cow position:chr28:26922702-26922245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 32

               
               
               Conread position:5-451
               
               
               Cow position:chr28:3914378-3914841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 116

               
               
               Conread position:5-453
               
               
               Cow position:chr28:30327416-30326964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 119

               
               
               Conread position:5-458
               
               
               Cow position:chr28:23530532-23531004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:317
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):113, 144

               
               
               Conread position:5-459
               
               
               Cow position:chr28:5203873-5204327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 41

               
               
               Conread position:5-459
               
               
               Cow position:chr28:9285695-9285245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 9

               
               
               Conread position:5-460
               
               
               Cow position:chr28:8022443-8021971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:313
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 151

               
               
               Conread position:5-460
               
               
               Cow position:chr28:12430275-12430737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 90

               
               
               Conread position:5-460
               
               
               Cow position:chr28:16109621-16110072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-460
               
               
               Cow position:chr28:19080203-19079712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 192

               
               
               Conread position:5-460
               
               
               Cow position:chr28:19222477-19222017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 110

               
               
               Conread position:5-460
               
               
               Cow position:chr28:20124457-20124918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 70

               
               
               Conread position:5-460
               
               
               Cow position:chr28:25399558-25400002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 46

               
               
               Conread position:5-465
               
               
               Cow position:chr28:16919493-16919031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 63

               
               
               Conread position:5-466
               
               
               Cow position:chr28:3144219-3143741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-466
               
               
               Cow position:chr28:21844624-21845098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-466
               
               
               Cow position:chr28:21868119-21868601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 109

               
               
               Conread position:5-469
               
               
               Cow position:chr28:21363426-21363882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 123

               
               
               Conread position:5-479
               
               
               Cow position:chr28:12964246-12964721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:317
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):128, 15

               
               
               Conread position:5-483
               
               
               Cow position:chr28:14933630-14934114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 108

               
               
               Conread position:6-290
               
               
               Cow position:chr28:14150907-14151186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):122, 40

               
               
               Conread position:6-290
               
               
               Cow position:chr28:17738409-17738121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 18

               
               
               Conread position:6-349
               
               
               Cow position:chr28:22171060-22170695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:253
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:6-356
               
               
               Cow position:chr28:17316533-17316886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):122, 47

               
               
               Conread position:6-356
               
               
               Cow position:chr28:18717456-18717109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 82

               
               
               Conread position:6-440
               
               
               Cow position:chr28:15272590-15272160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:281
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):121, 49

               
               
               Conread position:6-443
               
               
               Cow position:chr28:22132595-22133026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 179

               
               
               Conread position:6-446
               
               
               Cow position:chr28:7865000-7865448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:303
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):167, 62

               
               
               Conread position:6-446
               
               
               Cow position:chr28:23675817-23676257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 59

               
               
               Conread position:6-448
               
               
               Cow position:chr28:5817521-5817963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):335, 35

               
               
               Conread position:6-453
               
               
               Cow position:chr28:9426673-9426224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 154

               
               
               Conread position:6-453
               
               
               Cow position:chr28:11752476-11752013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 233

               
               
               Conread position:6-459
               
               
               Cow position:chr28:6971670-6971214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:6-460
               
               
               Cow position:chr28:20312943-20313410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 139

               
               
               Conread position:6-460
               
               
               Cow position:chr28:28766240-28765770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 18

               
               
               Conread position:6-460
               
               
               Cow position:chr28:31648746-31649208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 51

               
               
               Conread position:6-466
               
               
               Cow position:chr28:8787219-8787683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 118

               
               
               Conread position:6-466
               
               
               Cow position:chr28:10606943-10606493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 87

               
               
               Conread position:6-467
               
               
               Cow position:chr28:7268264-7267804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 55

               
               
               Conread position:6-490
               
               
               Cow position:chr28:26614564-26615041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:337
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):228, 111

               
               
               Conread position:7-278
               
               
               Cow position:chr28:16441060-16441324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):121, 61

               
               
               Conread position:7-466
               
               
               Cow position:chr28:13473977-13474442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 82

               
               
               Conread position:9-460
               
               
               Cow position:chr28:21104172-21103697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 52

               
               
               Conread position:10-467
               
               
               Cow position:chr28:4282819-4282350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 240

               
               
               Conread position:12-407
               
               
               Cow position:chr28:10744880-10745294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:13-372
               
               
               Cow position:chr28:19222918-19222566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 64

               
               
               Conread position:13-446
               
               
               Cow position:chr28:16085001-16085444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 78

               
               
               Conread position:14-435
               
               
               Cow position:chr28:7512913-7512476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 55

               
               
               Conread position:15-455
               
               
               Cow position:chr28:34561036-34561471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):113, 161

               
               
               Conread position:17-460
               
               
               Cow position:chr28:4308218-4307761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 146

               
               
               Conread position:20-488
               
               
               Cow position:chr28:26684798-26685272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:315
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):55, 45

               
               
               Conread position:24-460
               
               
               Cow position:chr28:7698290-7697845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 28

               
               
               Conread position:24-466
               
               
               Cow position:chr28:5931034-5931490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 164

               
               
               Conread position:29-460
               
               
               Cow position:chr28:6059775-6059337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:296
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):99, 46

               
               
               Conread position:32-290
               
               
               Cow position:chr28:24368245-24367979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):96, 42

               
               
               Conread position:36-409
               
               
               Cow position:chr28:31987303-31987696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):16, 65

               
               
               Conread position:38-450
               
               
               Cow position:chr28:23008027-23007606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 142

               
               
               Conread position:41-437
               
               
               Cow position:chr28:15044152-15043752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:269
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):55, 102

               
               
               Conread position:57-343
               
               
               Cow position:chr28:26784748-26784455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):22, 275

               
               
               Conread position:61-453
               
               
               Cow position:chr28:18354595-18354201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 53

               
               
               Conread position:62-405
               
               
               Cow position:chr28:15263999-15263640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):66, 24

               
               
               Conread position:63-460
               
               
               Cow position:chr28:26743348-26743759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 52

               
               
               Conread position:75-465
               
               
               Cow position:chr28:3493046-3492644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 38

               
               
               Conread position:76-461
               
               
               Cow position:chr28:10172675-10172283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):52, 154

               
               
               Conread position:77-336
               
               
               Cow position:chr28:27428492-27428748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):51, 97

               
               
               Conread position:77-437
               
               
               Cow position:chr28:13176939-13176579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 170

               
               
               Conread position:77-460
               
               
               Cow position:chr28:4841657-4841257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:279
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:77-463
               
               
               Cow position:chr28:26719100-26719479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:270
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):154, 84

               
               
               Conread position:78-373
               
               
               Cow position:chr28:16253114-16252818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 46

               
               
               Conread position:78-375
               
               
               Cow position:chr28:25424562-25424254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):8, 36

               
               
               Conread position:78-458
               
               
               Cow position:chr28:25249096-25249487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 94

               
               
               Conread position:78-458
               
               
               Cow position:chr28:29434684-29434295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):49, 150

               
               
               Conread position:78-460
               
               
               Cow position:chr28:19026262-19025870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:282
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 86

               
               
               Conread position:78-466
               
               
               Cow position:chr28:24996848-24996475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):7, 58

               
               
               Conread position:79-341
               
               
               Cow position:chr28:6861695-6861961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 50

               
               
               Conread position:79-373
               
               
               Cow position:chr28:21502137-21502430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:80-354
               
               
               Cow position:chr28:6307635-6307911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):48, 42

               
               
               Conread position:80-446
               
               
               Cow position:chr28:30608438-30608068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:80-452
               
               
               Cow position:chr28:24343109-24343491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:80-457
               
               
               Cow position:chr28:16370332-16369953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):5, 34

               
               
               Conread position:80-458
               
               
               Cow position:chr28:23410581-23410192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 106

               
               
               Conread position:82-436
               
               
               Cow position:chr28:2862606-2862977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 148

               
               
               Conread position:82-446
               
               
               Cow position:chr28:13865590-13865958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):50, 83

               
               
               Conread position:82-460
               
               
               Cow position:chr28:33051765-33052169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 168

               
               
               Conread position:83-459
               
               
               Cow position:chr28:9740217-9740602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):45, 77

               
               
               Conread position:84-437
               
               
               Cow position:chr28:1837743-1838095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):107, 31

               
               
               Conread position:84-466
               
               
               Cow position:chr28:25596379-25596767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:269
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):48, 142

               
               
               Conread position:85-290
               
               
               Cow position:chr28:13242076-13241875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:85-370
               
               
               Cow position:chr28:13607633-13607925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:85-453
               
               
               Cow position:chr28:3078930-3078556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:85-459
               
               
               Cow position:chr28:16386758-16386386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:262
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):47, 95

               
               
               Conread position:85-460
               
               
               Cow position:chr28:5236852-5236471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):106, 44

               
               
               Conread position:87-459
               
               
               Cow position:chr28:22321172-22321552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:254
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:87-460
               
               
               Cow position:chr28:8408486-8408869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:267
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):21, 64

               
               
               Conread position:88-457
               
               
               Cow position:chr28:2898746-2899119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 209

               
               
               Conread position:94-465
               
               
               Cow position:chr28:11423047-11422672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:262
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):198, 82

               
               
               Conread position:97-367
               
               
               Cow position:chr28:4914342-4914059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:98-461
               
               
               Cow position:chr28:9636696-9636323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):30, 132

               
               
               Conread position:100-336
               
               
               Cow position:chr28:5658317-5658545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:101-364
               
               
               Cow position:chr28:28076644-28076390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):27, 91

               
               
               Conread position:101-440
               
               
               Cow position:chr28:16204570-16204222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):18, 130

               
               
               Conread position:101-444
               
               
               Cow position:chr28:34430663-34430308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 211

               
               
               Conread position:103-290
               
               
               Cow position:chr28:3077759-3077942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):25, 10

               
               
               Conread position:103-466
               
               
               Cow position:chr28:11884757-11884382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:260
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):25, 64

               
               
               Conread position:106-460
               
               
               Cow position:chr28:5144754-5144388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 153

               
               
               Conread position:107-457
               
               
               Cow position:chr28:9099704-9100056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):21, 92

               
               
               Conread position:107-466
               
               
               Cow position:chr28:12951202-12951560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):21, 75

               
               
               Conread position:108-460
               
               
               Cow position:chr28:750997-751360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):80, 18

               
               
               Conread position:110-460
               
               
               Cow position:chr28:10053566-10053191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:115-352
               
               
               Cow position:chr28:10478565-10478326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):13, 83

               
               
               Conread position:117-445
               
               
               Cow position:chr28:11818180-11817846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):74, 87

               
               
               Conread position:118-420
               
               
               Cow position:chr28:18625003-18625327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:121-445
               
               
               Cow position:chr28:5224495-5224817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):21, 136

               
               
               Conread position:126-366
               
               
               Cow position:chr28:3714591-3714832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):173, 111

               
               
               Conread position:132-469
               
               
               Cow position:chr28:5437296-5436947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):59, 97

               
               
               Conread position:136-365
               
               
               Cow position:chr28:25459325-25459564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:138-457
               
               
               Cow position:chr28:4158753-4159085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 78

               
               
               Conread position:142-466
               
               
               Cow position:chr28:4881440-4881099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):10, 174

               
               
               Conread position:145-469
               
               
               Cow position:chr28:26982938-26982596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:241
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):46, 185

               
               
               Conread position:147-458
               
               
               Cow position:chr28:23724645-23724331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):52, 92

               
               
               Conread position:149-358
               
               
               Cow position:chr28:118243-118027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:150-469
               
               
               Cow position:chr28:11829129-11828820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):28, 80

               
               
               Conread position:151-358
               
               
               Cow position:chr28:19023947-19024168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):40, 109

               
               
               Conread position:151-453
               
               
               Cow position:chr28:18760228-18759929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):140, 29

               
               
               Conread position:151-466
               
               
               Cow position:chr28:11866855-11866524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):40, 113

               
               
               Conread position:153-460
               
               
               Cow position:chr28:2752684-2752361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:159-460
               
               
               Cow position:chr28:2132100-2131789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):32, 68

               
               
               Conread position:166-465
               
               
               Cow position:chr28:4016368-4016669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):130, 59

               
               
               Conread position:171-459
               
               
               Cow position:chr28:4643928-4643634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):151, 66

               
               
               Conread position:181-456
               
               
               Cow position:chr28:1632810-1632528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):78, 36

               
               
               Conread position:186-458
               
               
               Cow position:chr28:30746878-30746599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):107, 39

               
               
               Conread position:186-459
               
               
               Cow position:chr28:25728049-25728323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):105, 12

               
               
               Conread position:194-459
               
               
               Cow position:chr28:27161472-27161195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:198-437
               
               
               Cow position:chr28:32365708-32365953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):98, 43

               
               
               Conread position:199-460
               
               
               Cow position:chr28:7009112-7008845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:212-446
               
               
               Cow position:chr28:11346609-11346368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):158, 83

               
               
               Conread position:216-485
               
               
               Cow position:chr28:32174511-32174789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):77, 9

               
               
               Conread position:225-445
               
               
               Cow position:chr28:5166654-5166885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:227-453
               
               
               Cow position:chr28:34248133-34247905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):143, 57

               
               
               Conread position:227-458
               
               
               Cow position:chr28:19564338-19564097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):65, 33

               
               
               Conread position:241-445
               
               
               Cow position:chr28:7372218-7372004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:248-460
               
               
               Cow position:chr28:7388857-7388639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):18, 70

               
               
               Conread position:253-459
               
               
               Cow position:chr28:25677432-25677209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:254-481
               
               
               Cow position:chr28:13090609-13090370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):39, 6

               
               
               Conread position:259-460
               
               
               Cow position:chr28:3161032-3160820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):34, 162

               
               
               Conread position:280-466
               
               
               Cow position:chr28:2279645-2279458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 48

               
               
               Conread position:310-466
               
               
               Cow position:chr28:21008690-21008526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):60, 161

               
               
               Conread position:316-469
               
               
               Cow position:chr28:18770065-18770222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:1-345
               
               
               Cow position:chr29:37292431-37292782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):74, 12

               
               
               Conread position:2-265
               
               
               Cow position:chr29:686532-686265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:200
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):126, 7

               
               
               Conread position:2-289
               
               
               Cow position:chr29:26335719-26335431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):126, 7

               
               
               Conread position:2-289
               
               
               Cow position:chr29:26616077-26615777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):74, 6

               
               
               Conread position:2-436
               
               
               Cow position:chr29:32290261-32290711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 7

               
               
               Conread position:2-444
               
               
               Cow position:chr29:17408992-17409445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 76

               
               
               Conread position:2-448
               
               
               Cow position:chr29:9911821-9912290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:311
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):59, 7

               
               
               Conread position:2-453
               
               
               Cow position:chr29:24623901-24624368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 7

               
               
               Conread position:5-229
               
               
               Cow position:chr29:6014758-6014987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):74, 147

               
               
               Conread position:5-287
               
               
               Cow position:chr29:26519798-26519517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):127, 21

               
               
               Conread position:5-287
               
               
               Cow position:chr29:28883741-28884027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):123, 174

               
               
               Conread position:5-288
               
               
               Cow position:chr29:5977460-5977167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):123, 146

               
               
               Conread position:5-305
               
               
               Cow position:chr29:12798593-12798883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):226, 72

               
               
               Conread position:5-318
               
               
               Cow position:chr29:35281164-35281469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:5-356
               
               
               Cow position:chr29:37785525-37785158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):73, 309

               
               
               Conread position:5-363
               
               
               Cow position:chr29:42406324-42406694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:260
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):123, 109

               
               
               Conread position:5-373
               
               
               Cow position:chr29:35484906-35485277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 15

               
               
               Conread position:5-445
               
               
               Cow position:chr29:19428334-19428771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:307
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):284, 61

               
               
               Conread position:5-445
               
               
               Cow position:chr29:21196989-21196538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-445
               
               
               Cow position:chr29:38581630-38582079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 108

               
               
               Conread position:5-450
               
               
               Cow position:chr29:22935945-22936387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 29

               
               
               Conread position:5-453
               
               
               Cow position:chr29:1933899-1933452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 293

               
               
               Conread position:5-453
               
               
               Cow position:chr29:6293803-6293360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 63

               
               
               Conread position:5-453
               
               
               Cow position:chr29:16609401-16609867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 48

               
               
               Conread position:5-453
               
               
               Cow position:chr29:39567347-39567801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 110

               
               
               Conread position:5-457
               
               
               Cow position:chr29:13028096-13028563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:308
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):159, 71

               
               
               Conread position:5-457
               
               
               Cow position:chr29:32963201-32963660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 239

               
               
               Conread position:5-459
               
               
               Cow position:chr29:13639692-13639239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 91

               
               
               Conread position:5-459
               
               
               Cow position:chr29:17109633-17110082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 38

               
               
               Conread position:5-459
               
               
               Cow position:chr29:36530525-36530991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 28

               
               
               Conread position:5-460
               
               
               Cow position:chr29:11398266-11397797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:318
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):81, 118

               
               
               Conread position:5-460
               
               
               Cow position:chr29:24952347-24952809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 108

               
               
               Conread position:5-460
               
               
               Cow position:chr29:25088396-25088872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 252

               
               
               Conread position:5-460
               
               
               Cow position:chr29:28775787-28775337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 45

               
               
               Conread position:5-460
               
               
               Cow position:chr29:40096626-40097088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 107

               
               
               Conread position:5-460
               
               
               Cow position:chr29:40892053-40891580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 321

               
               
               Conread position:5-466
               
               
               Cow position:chr29:6635765-6636214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 172

               
               
               Conread position:5-466
               
               
               Cow position:chr29:26778552-26779014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:311
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-466
               
               
               Cow position:chr29:35291759-35292224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 166

               
               
               Conread position:5-469
               
               
               Cow position:chr29:23874118-23874595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 52

               
               
               Conread position:5-469
               
               
               Cow position:chr29:34745993-34745524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-473
               
               
               Cow position:chr29:45005955-45005490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 119

               
               
               Conread position:6-290
               
               
               Cow position:chr29:35434532-35434813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):122, 249

               
               
               Conread position:6-306
               
               
               Cow position:chr29:9686347-9686037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):74, 174

               
               
               Conread position:6-315
               
               
               Cow position:chr29:35075561-35075247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:6-445
               
               
               Cow position:chr29:36216781-36217223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 66

               
               
               Conread position:6-445
               
               
               Cow position:chr29:43495732-43496151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:283
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):122, 23

               
               
               Conread position:6-446
               
               
               Cow position:chr29:87351-86900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 45

               
               
               Conread position:6-447
               
               
               Cow position:chr29:10156627-10156191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:308
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:6-451
               
               
               Cow position:chr29:10653001-10653449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:299
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):85, 213

               
               
               Conread position:6-455
               
               
               Cow position:chr29:4480512-4480052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 109

               
               
               Conread position:6-459
               
               
               Cow position:chr29:9709361-9709821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 39

               
               
               Conread position:6-460
               
               
               Cow position:chr29:32800045-32799585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 170

               
               
               Conread position:6-463
               
               
               Cow position:chr29:41811912-41811460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:306
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):122, 58

               
               
               Conread position:6-469
               
               
               Cow position:chr29:26017849-26017367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 122

               
               
               Conread position:7-412
               
               
               Cow position:chr29:17668169-17668565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):120, 69

               
               
               Conread position:7-460
               
               
               Cow position:chr29:40583460-40583911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:9-290
               
               
               Cow position:chr29:27007784-27008062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):125, 82

               
               
               Conread position:9-290
               
               
               Cow position:chr29:29477367-29477088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):119, 209

               
               
               Conread position:9-446
               
               
               Cow position:chr29:10154118-10153682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:280
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):248, 67

               
               
               Conread position:9-469
               
               
               Cow position:chr29:21443679-21443203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:10-453
               
               
               Cow position:chr29:28195850-28195402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:10-466
               
               
               Cow position:chr29:35501979-35501525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 60

               
               
               Conread position:13-409
               
               
               Cow position:chr29:6925691-6926080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 80

               
               
               Conread position:13-460
               
               
               Cow position:chr29:1325110-1325566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 100

               
               
               Conread position:14-374
               
               
               Cow position:chr29:12005094-12004730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 99

               
               
               Conread position:15-272
               
               
               Cow position:chr29:26289415-26289159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):113, 100

               
               
               Conread position:24-445
               
               
               Cow position:chr29:13372346-13372774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 50

               
               
               Conread position:26-400
               
               
               Cow position:chr29:2071886-2071505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 87

               
               
               Conread position:38-459
               
               
               Cow position:chr29:4625299-4624870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 124

               
               
               Conread position:39-460
               
               
               Cow position:chr29:2644613-2644186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 79

               
               
               Conread position:43-452
               
               
               Cow position:chr29:22162558-22162131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):38, 148

               
               
               Conread position:54-460
               
               
               Cow position:chr29:6844919-6844506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 59

               
               
               Conread position:57-460
               
               
               Cow position:chr29:750185-749781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:285
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):169, 57

               
               
               Conread position:62-288
               
               
               Cow position:chr29:14097414-14097183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 185

               
               
               Conread position:62-290
               
               
               Cow position:chr29:3502777-3502998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):29, 57

               
               
               Conread position:62-367
               
               
               Cow position:chr29:699891-699590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):151, 38

               
               
               Conread position:66-458
               
               
               Cow position:chr29:39111586-39111192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:279
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:67-290
               
               
               Cow position:chr29:3395833-3396052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):61, 115

               
               
               Conread position:69-289
               
               
               Cow position:chr29:4065814-4066031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 6

               
               
               Conread position:70-290
               
               
               Cow position:chr29:26980121-26980345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):58, 72

               
               
               Conread position:72-459
               
               
               Cow position:chr29:7965981-7966372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):60, 31

               
               
               Conread position:74-447
               
               
               Cow position:chr29:13634570-13634185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):54, 66

               
               
               Conread position:75-467
               
               
               Cow position:chr29:23697708-23698111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):24, 14

               
               
               Conread position:77-368
               
               
               Cow position:chr29:6217815-6217528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):42, 86

               
               
               Conread position:77-374
               
               
               Cow position:chr29:21534945-21534640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):114, 48

               
               
               Conread position:77-405
               
               
               Cow position:chr29:22069014-22068669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):50, 89

               
               
               Conread position:77-434
               
               
               Cow position:chr29:2984620-2984990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 38

               
               
               Conread position:77-435
               
               
               Cow position:chr29:5099029-5098665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):51, 159

               
               
               Conread position:77-448
               
               
               Cow position:chr29:32655691-32655321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):101, 26

               
               
               Conread position:77-450
               
               
               Cow position:chr29:16195585-16195956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):51, 110

               
               
               Conread position:77-457
               
               
               Cow position:chr29:12784223-12783842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 106

               
               
               Conread position:78-310
               
               
               Cow position:chr29:19338713-19338956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):50, 157

               
               
               Conread position:78-458
               
               
               Cow position:chr29:12679890-12680278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:269
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):50, 13

               
               
               Conread position:78-460
               
               
               Cow position:chr29:22175427-22175810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 39

               
               
               Conread position:79-373
               
               
               Cow position:chr29:41747179-41747479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:79-459
               
               
               Cow position:chr29:41530585-41530974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:270
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):49, 36

               
               
               Conread position:80-274
               
               
               Cow position:chr29:40165978-40166176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):48, 86

               
               
               Conread position:80-466
               
               
               Cow position:chr29:29769610-29769216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:274
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):48, 92

               
               
               Conread position:80-467
               
               
               Cow position:chr29:8669091-8669488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):52, 186

               
               
               Conread position:81-459
               
               
               Cow position:chr29:31928716-31929114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 160

               
               
               Conread position:82-466
               
               
               Cow position:chr29:109448-109818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 31

               
               
               Conread position:83-316
               
               
               Cow position:chr29:16756794-16757035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):44, 30

               
               
               Conread position:83-402
               
               
               Cow position:chr29:9139147-9139489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:83-466
               
               
               Cow position:chr29:22613174-22613561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):206, 34

               
               
               Conread position:85-474
               
               
               Cow position:chr29:35677801-35677403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):8, 13

               
               
               Conread position:86-460
               
               
               Cow position:chr29:4194379-4194002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):42, 71

               
               
               Conread position:88-460
               
               
               Cow position:chr29:8926715-8926335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):40, 111

               
               
               Conread position:88-460
               
               
               Cow position:chr29:17222152-17222543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:89-486
               
               
               Cow position:chr29:356071-356473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:276
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):39, 113

               
               
               Conread position:94-459
               
               
               Cow position:chr29:25737667-25737288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):15, 92

               
               
               Conread position:95-445
               
               
               Cow position:chr29:20903537-20903179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):33, 133

               
               
               Conread position:96-356
               
               
               Cow position:chr29:10659595-10659338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 7

               
               
               Conread position:96-462
               
               
               Cow position:chr29:40852688-40853058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 19

               
               
               Conread position:97-373
               
               
               Cow position:chr29:36183029-36183312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:97-452
               
               
               Cow position:chr29:44378665-44378301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:100-352
               
               
               Cow position:chr29:42886139-42886401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:101-364
               
               
               Cow position:chr29:32767764-32767510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):27, 91

               
               
               Conread position:101-457
               
               
               Cow position:chr29:11915573-11915943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:254
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):26, 142

               
               
               Conread position:102-446
               
               
               Cow position:chr29:25474665-25475035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):26, 200

               
               
               Conread position:102-450
               
               
               Cow position:chr29:16309508-16309855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):26, 73

               
               
               Conread position:103-289
               
               
               Cow position:chr29:3711145-3711335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):25, 95

               
               
               Conread position:103-373
               
               
               Cow position:chr29:24119978-24119709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):25, 123

               
               
               Conread position:103-445
               
               
               Cow position:chr29:27858550-27858898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):24, 177

               
               
               Conread position:105-457
               
               
               Cow position:chr29:34744853-34744506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):190, 19

               
               
               Conread position:107-450
               
               
               Cow position:chr29:4520098-4520450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 119

               
               
               Conread position:107-469
               
               
               Cow position:chr29:24292641-24293004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):132, 19

               
               
               Conread position:108-459
               
               
               Cow position:chr29:19949073-19949432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):20, 129

               
               
               Conread position:108-459
               
               
               Cow position:chr29:34773964-34773612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):20, 53

               
               
               Conread position:108-460
               
               
               Cow position:chr29:11704886-11705239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 129

               
               
               Conread position:108-460
               
               
               Cow position:chr29:31489083-31489444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):9, 133

               
               
               Conread position:118-371
               
               
               Cow position:chr29:39642950-39643205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):10, 60

               
               
               Conread position:118-423
               
               
               Cow position:chr29:868546-868864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):10, 82

               
               
               Conread position:118-442
               
               
               Cow position:chr29:1229382-1229715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 48

               
               
               Conread position:118-460
               
               
               Cow position:chr29:23844605-23844966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):9, 139

               
               
               Conread position:118-471
               
               
               Cow position:chr29:19821070-19821415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 51

               
               
               Conread position:125-373
               
               
               Cow position:chr29:6337444-6337694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):164, 64

               
               
               Conread position:125-460
               
               
               Cow position:chr29:40299231-40298894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):66, 123

               
               
               Conread position:129-459
               
               
               Cow position:chr29:26654255-26653920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):60, 82

               
               
               Conread position:129-464
               
               
               Cow position:chr29:22778396-22778042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:130-367
               
               
               Cow position:chr29:2532848-2533084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):61, 99

               
               
               Conread position:130-460
               
               
               Cow position:chr29:30440712-30441065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):80, 47

               
               
               Conread position:130-480
               
               
               Cow position:chr29:6286371-6286014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):163, 66

               
               
               Conread position:131-456
               
               
               Cow position:chr29:38580763-38581100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):60, 104

               
               
               Conread position:131-457
               
               
               Cow position:chr29:43251376-43251040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):162, 48

               
               
               Conread position:132-373
               
               
               Cow position:chr29:14484757-14484506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:136-424
               
               
               Cow position:chr29:41364902-41365199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):42, 181

               
               
               Conread position:138-440
               
               
               Cow position:chr29:10818642-10818344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):50, 89

               
               
               Conread position:138-459
               
               
               Cow position:chr29:36209959-36210266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):314, 52

               
               
               Conread position:142-457
               
               
               Cow position:chr29:39329798-39329480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:144-423
               
               
               Cow position:chr29:3100461-3100178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):48, 82

               
               
               Conread position:146-467
               
               
               Cow position:chr29:11054051-11053725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):142, 13

               
               
               Conread position:147-453
               
               
               Cow position:chr29:28979676-28979382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):86, 63

               
               
               Conread position:151-458
               
               
               Cow position:chr29:30188533-30188229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):40, 73

               
               
               Conread position:152-458
               
               
               Cow position:chr29:32211251-32210947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):35, 77

               
               
               Conread position:154-457
               
               
               Cow position:chr29:11646914-11647217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):138, 37

               
               
               Conread position:155-455
               
               
               Cow position:chr29:4334539-4334840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):134, 122

               
               
               Conread position:160-453
               
               
               Cow position:chr29:28166396-28166103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):133, 65

               
               
               Conread position:163-460
               
               
               Cow position:chr29:37618125-37618434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):24, 61

               
               
               Conread position:164-445
               
               
               Cow position:chr29:10235309-10235025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):27, 62

               
               
               Conread position:166-460
               
               
               Cow position:chr29:23244057-23243750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):128, 57

               
               
               Conread position:167-460
               
               
               Cow position:chr29:25091936-25092232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):145, 71

               
               
               Conread position:171-459
               
               
               Cow position:chr29:24252066-24252360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):121, 54

               
               
               Conread position:172-459
               
               
               Cow position:chr29:4085148-4085434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):63, 83

               
               
               Conread position:181-460
               
               
               Cow position:chr29:17296969-17297262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):38, 28

               
               
               Conread position:186-444
               
               
               Cow position:chr29:26416203-26416460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):124, 37

               
               
               Conread position:198-437
               
               
               Cow position:chr29:44008927-44008682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 114

               
               
               Conread position:225-445
               
               
               Cow position:chr29:12626098-12625865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:238-458
               
               
               Cow position:chr29:847747-847518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:238-463
               
               
               Cow position:chr29:40959953-40959717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):55, 46

               
               
               Conread position:244-442
               
               
               Cow position:chr29:27873504-27873709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):51, 41

               
               
               Conread position:244-447
               
               
               Cow position:chr29:6015022-6015239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):49, 69

               
               
               Conread position:251-459
               
               
               Cow position:chr29:2263090-2262868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:259-462
               
               
               Cow position:chr29:20770258-20770474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:264-452
               
               
               Cow position:chr29:8005003-8004809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):29, 86

               
               
               Conread position:265-458
               
               
               Cow position:chr29:19250269-19250457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 53

               
               
               Conread position:266-453
               
               
               Cow position:chr29:21645246-21645428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):101, 25

               
               
               Conread position:314-465
               
               
               Cow position:chr29:396385-396539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:324-466
               
               
               Cow position:chr29:40791292-40791435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:2-336
               
               
               Cow position:chr3:15662061-15661729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 11

               
               
               Conread position:2-349
               
               
               Cow position:chr3:2903661-2903308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):88, 8

               
               
               Conread position:2-399
               
               
               Cow position:chr3:46350284-46350714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:297
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:2-400
               
               
               Cow position:chr3:42177793-42178197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 7

               
               
               Conread position:2-458
               
               
               Cow position:chr3:80053896-80053440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 9

               
               
               Conread position:2-463
               
               
               Cow position:chr3:3032038-3032515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 8

               
               
               Conread position:3-466
               
               
               Cow position:chr3:53588754-53588275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:320
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):82, 6

               
               
               Conread position:4-437
               
               
               Cow position:chr3:14626512-14626069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 110

               
               
               Conread position:5-230
               
               
               Cow position:chr3:55301111-55300886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-233
               
               
               Cow position:chr3:51032984-51033214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 108

               
               
               Conread position:5-272
               
               
               Cow position:chr3:14717453-14717716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):181, 108

               
               
               Conread position:5-289
               
               
               Cow position:chr3:53903828-53904102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-290
               
               
               Cow position:chr3:75727950-75727660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:5-295
               
               
               Cow position:chr3:6853864-6853577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 111

               
               
               Conread position:5-303
               
               
               Cow position:chr3:8159594-8159891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):122, 108

               
               
               Conread position:5-308
               
               
               Cow position:chr3:22872413-22872102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:5-318
               
               
               Cow position:chr3:33124453-33124136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):132, 94

               
               
               Conread position:5-339
               
               
               Cow position:chr3:67161575-67161919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:245
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):123, 47

               
               
               Conread position:5-353
               
               
               Cow position:chr3:28675628-28675976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):122, 237

               
               
               Conread position:5-355
               
               
               Cow position:chr3:57554206-57553857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 52

               
               
               Conread position:5-358
               
               
               Cow position:chr3:3164853-3164501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 30

               
               
               Conread position:5-358
               
               
               Cow position:chr3:43528598-43528242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 232

               
               
               Conread position:5-364
               
               
               Cow position:chr3:13899814-13899447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 317

               
               
               Conread position:5-365
               
               
               Cow position:chr3:76173023-76172667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:253
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):123, 137

               
               
               Conread position:5-368
               
               
               Cow position:chr3:9843217-9843591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 114

               
               
               Conread position:5-373
               
               
               Cow position:chr3:19708458-19708095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:252
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):289, 60

               
               
               Conread position:5-373
               
               
               Cow position:chr3:39328051-39328409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:258
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):123, 112

               
               
               Conread position:5-373
               
               
               Cow position:chr3:49218668-49218305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-373
               
               
               Cow position:chr3:69849863-69849498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 175

               
               
               Conread position:5-413
               
               
               Cow position:chr3:66610199-66609787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 159

               
               
               Conread position:5-424
               
               
               Cow position:chr3:20438022-20437588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:295
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):35, 30

               
               
               Conread position:5-427
               
               
               Cow position:chr3:26554075-26553644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:5-434
               
               
               Cow position:chr3:61539436-61539879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 56

               
               
               Conread position:5-436
               
               
               Cow position:chr3:61839930-61840355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:298
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):123, 81

               
               
               Conread position:5-437
               
               
               Cow position:chr3:20802989-20802550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 65

               
               
               Conread position:5-442
               
               
               Cow position:chr3:20663899-20663463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 289

               
               
               Conread position:5-443
               
               
               Cow position:chr3:71231045-71231482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 171

               
               
               Conread position:5-443
               
               
               Cow position:chr3:79884847-79884399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 110

               
               
               Conread position:5-444
               
               
               Cow position:chr3:48252534-48252973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 121

               
               
               Conread position:5-444
               
               
               Cow position:chr3:49230654-49231088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 94

               
               
               Conread position:5-444
               
               
               Cow position:chr3:75479657-75480087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:294
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):123, 28

               
               
               Conread position:5-445
               
               
               Cow position:chr3:55085551-55085080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 212

               
               
               Conread position:5-445
               
               
               Cow position:chr3:72390722-72391171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 100

               
               
               Conread position:5-446
               
               
               Cow position:chr3:24352525-24352950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):17, 33

               
               
               Conread position:5-446
               
               
               Cow position:chr3:59588158-59588600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 254

               
               
               Conread position:5-446
               
               
               Cow position:chr3:68302967-68303404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 238

               
               
               Conread position:5-446
               
               
               Cow position:chr3:70566099-70565648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 234

               
               
               Conread position:5-447
               
               
               Cow position:chr3:37486149-37485706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 144

               
               
               Conread position:5-447
               
               
               Cow position:chr3:55190106-55189662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 20

               
               
               Conread position:5-448
               
               
               Cow position:chr3:50614284-50614733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:304
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):123, 92

               
               
               Conread position:5-452
               
               
               Cow position:chr3:5365324-5365773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 166

               
               
               Conread position:5-453
               
               
               Cow position:chr3:4049842-4050290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:317
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):79, 129

               
               
               Conread position:5-455
               
               
               Cow position:chr3:26920538-26921009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 32

               
               
               Conread position:5-458
               
               
               Cow position:chr3:5101121-5100670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 181

               
               
               Conread position:5-458
               
               
               Cow position:chr3:11986970-11987431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 70

               
               
               Conread position:5-458
               
               
               Cow position:chr3:14552519-14552977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 8

               
               
               Conread position:5-458
               
               
               Cow position:chr3:23169431-23168964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 225

               
               
               Conread position:5-458
               
               
               Cow position:chr3:53384644-53384178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 161

               
               
               Conread position:5-458
               
               
               Cow position:chr3:59001106-59000654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-459
               
               
               Cow position:chr3:65968800-65969270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:5-459
               
               
               Cow position:chr3:74233849-74234289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:309
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):159, 70

               
               
               Conread position:5-460
               
               
               Cow position:chr3:2506840-2506373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 96

               
               
               Conread position:5-460
               
               
               Cow position:chr3:54434612-54435075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 109

               
               
               Conread position:5-460
               
               
               Cow position:chr3:57763846-57764324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 241

               
               
               Conread position:5-460
               
               
               Cow position:chr3:59630861-59630409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 207

               
               
               Conread position:5-460
               
               
               Cow position:chr3:65236658-65237128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 168

               
               
               Conread position:5-463
               
               
               Cow position:chr3:48296350-48296805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 121

               
               
               Conread position:5-464
               
               
               Cow position:chr3:53221667-53222125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 50

               
               
               Conread position:5-464
               
               
               Cow position:chr3:80740230-80740669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:319
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):289, 48

               
               
               Conread position:5-465
               
               
               Cow position:chr3:7338138-7337671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:321
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):104, 46

               
               
               Conread position:5-466
               
               
               Cow position:chr3:30179723-30180198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 72

               
               
               Conread position:5-466
               
               
               Cow position:chr3:48241260-48241725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 206

               
               
               Conread position:5-466
               
               
               Cow position:chr3:55010513-55010056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:318
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):122, 63

               
               
               Conread position:5-466
               
               
               Cow position:chr3:60597193-60597652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 30

               
               
               Conread position:5-466
               
               
               Cow position:chr3:75050990-75050506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:320
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:5-466
               
               
               Cow position:chr3:80564600-80565079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 41

               
               
               Conread position:5-466
               
               
               Cow position:chr3:82460811-82461291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:5-474
               
               
               Cow position:chr3:18066773-18067250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 222

               
               
               Conread position:5-479
               
               
               Cow position:chr3:12712284-12711792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:6-286
               
               
               Cow position:chr3:26973827-26973540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:6-288
               
               
               Cow position:chr3:26894311-26894583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):176, 55

               
               
               Conread position:6-290
               
               
               Cow position:chr3:16004344-16004066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):121, 47

               
               
               Conread position:6-356
               
               
               Cow position:chr3:44535120-44534767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):230, 88

               
               
               Conread position:6-373
               
               
               Cow position:chr3:2035938-2036307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 356

               
               
               Conread position:6-373
               
               
               Cow position:chr3:29807103-29807476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 72

               
               
               Conread position:6-407
               
               
               Cow position:chr3:67929631-67929209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 137

               
               
               Conread position:6-435
               
               
               Cow position:chr3:49461297-49460847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 107

               
               
               Conread position:6-438
               
               
               Cow position:chr3:58969248-58968821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:294
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):70, 28

               
               
               Conread position:6-439
               
               
               Cow position:chr3:72675728-72676174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 24

               
               
               Conread position:6-440
               
               
               Cow position:chr3:79220490-79220942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 7

               
               
               Conread position:6-445
               
               
               Cow position:chr3:34270574-34271003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 62

               
               
               Conread position:6-445
               
               
               Cow position:chr3:42423695-42423239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 190

               
               
               Conread position:6-451
               
               
               Cow position:chr3:26903757-26904206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 71

               
               
               Conread position:6-451
               
               
               Cow position:chr3:58766933-58767358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:313
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):308, 21

               
               
               Conread position:6-452
               
               
               Cow position:chr3:28908563-28908107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 183

               
               
               Conread position:6-452
               
               
               Cow position:chr3:73708699-73709142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 57

               
               
               Conread position:6-453
               
               
               Cow position:chr3:6689635-6690097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:308
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:6-460
               
               
               Cow position:chr3:14263035-14263496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 65

               
               
               Conread position:6-460
               
               
               Cow position:chr3:80581316-80581759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 31

               
               
               Conread position:6-461
               
               
               Cow position:chr3:35852829-35852367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 109

               
               
               Conread position:6-465
               
               
               Cow position:chr3:68146184-68145737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 40

               
               
               Conread position:6-466
               
               
               Cow position:chr3:7566774-7566306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 20

               
               
               Conread position:6-466
               
               
               Cow position:chr3:48362723-48363184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 136

               
               
               Conread position:6-466
               
               
               Cow position:chr3:59473756-59474235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 87

               
               
               Conread position:6-474
               
               
               Cow position:chr3:2674669-2675147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 197

               
               
               Conread position:6-491
               
               
               Cow position:chr3:49650021-49650521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 31

               
               
               Conread position:7-437
               
               
               Cow position:chr3:62826972-62826538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 39

               
               
               Conread position:7-458
               
               
               Cow position:chr3:16752606-16752157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):305, 107

               
               
               Conread position:8-458
               
               
               Cow position:chr3:53270462-53270934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:8-466
               
               
               Cow position:chr3:83490720-83491195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 30

               
               
               Conread position:9-340
               
               
               Cow position:chr3:49454875-49455214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):92, 313

               
               
               Conread position:9-354
               
               
               Cow position:chr3:30358991-30358643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 178

               
               
               Conread position:9-358
               
               
               Cow position:chr3:27285872-27286223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 44

               
               
               Conread position:9-373
               
               
               Cow position:chr3:16157328-16157685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:255
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):119, 59

               
               
               Conread position:9-414
               
               
               Cow position:chr3:31298514-31298105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 66

               
               
               Conread position:9-435
               
               
               Cow position:chr3:15954433-15954006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:296
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):118, 21

               
               
               Conread position:9-445
               
               
               Cow position:chr3:31047299-31046861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 116

               
               
               Conread position:9-453
               
               
               Cow position:chr3:2630438-2630873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:295
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:9-453
               
               
               Cow position:chr3:57760126-57760595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:301
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):54, 323

               
               
               Conread position:9-459
               
               
               Cow position:chr3:61278556-61279011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 43

               
               
               Conread position:9-465
               
               
               Cow position:chr3:31225094-31225541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 24

               
               
               Conread position:9-466
               
               
               Cow position:chr3:18393740-18393287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:13-349
               
               
               Cow position:chr3:17952303-17952643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 185

               
               
               Conread position:13-379
               
               
               Cow position:chr3:27544687-27544320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):64, 52

               
               
               Conread position:14-319
               
               
               Cow position:chr3:61361065-61361360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):216, 47

               
               
               Conread position:14-446
               
               
               Cow position:chr3:18459872-18459438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 187

               
               
               Conread position:14-458
               
               
               Cow position:chr3:53149974-53150433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 203

               
               
               Conread position:14-476
               
               
               Cow position:chr3:38346851-38347307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 61

               
               
               Conread position:16-458
               
               
               Cow position:chr3:71497496-71497036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 190

               
               
               Conread position:16-465
               
               
               Cow position:chr3:11254502-11254059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:304
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):89, 192

               
               
               Conread position:17-444
               
               
               Cow position:chr3:83816150-83815700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:299
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):65, 205

               
               
               Conread position:20-450
               
               
               Cow position:chr3:70895701-70896146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 19

               
               
               Conread position:21-458
               
               
               Cow position:chr3:69962054-69961634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 55

               
               
               Conread position:24-444
               
               
               Cow position:chr3:79292493-79292916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 54

               
               
               Conread position:24-453
               
               
               Cow position:chr3:7678336-7678750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 12

               
               
               Conread position:24-459
               
               
               Cow position:chr3:45881567-45882003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 202

               
               
               Conread position:24-466
               
               
               Cow position:chr3:2393314-2392854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:24-469
               
               
               Cow position:chr3:209980-210432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 155

               
               
               Conread position:27-459
               
               
               Cow position:chr3:81471436-81470993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 41

               
               
               Conread position:27-468
               
               
               Cow position:chr3:55272379-55271931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 74

               
               
               Conread position:30-459
               
               
               Cow position:chr3:15052278-15051848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 90

               
               
               Conread position:31-460
               
               
               Cow position:chr3:65058367-65058803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 82

               
               
               Conread position:36-463
               
               
               Cow position:chr3:67704206-67704655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 196

               
               
               Conread position:37-358
               
               
               Cow position:chr3:82657414-82657093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):91, 174

               
               
               Conread position:37-442
               
               
               Cow position:chr3:59101506-59101913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 135

               
               
               Conread position:37-446
               
               
               Cow position:chr3:55970178-55970596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 77

               
               
               Conread position:37-457
               
               
               Cow position:chr3:31309691-31309253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:38-466
               
               
               Cow position:chr3:2397111-2396680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 190

               
               
               Conread position:39-403
               
               
               Cow position:chr3:83920874-83921231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 29

               
               
               Conread position:39-457
               
               
               Cow position:chr3:17935254-17934836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:47-368
               
               
               Cow position:chr3:59514795-59515108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):81, 21

               
               
               Conread position:48-353
               
               
               Cow position:chr3:78200949-78201257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 181

               
               
               Conread position:48-446
               
               
               Cow position:chr3:28898546-28898133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:277
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):30, 71

               
               
               Conread position:49-468
               
               
               Cow position:chr3:53112851-53113289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 182

               
               
               Conread position:52-353
               
               
               Cow position:chr3:70333788-70333492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):5, 75

               
               
               Conread position:54-341
               
               
               Cow position:chr3:46161157-46160866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):79, 171

               
               
               Conread position:54-460
               
               
               Cow position:chr3:46900883-46901302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 59

               
               
               Conread position:54-460
               
               
               Cow position:chr3:53790856-53790430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:280
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):75, 179

               
               
               Conread position:56-408
               
               
               Cow position:chr3:65800285-65800637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 74

               
               
               Conread position:61-460
               
               
               Cow position:chr3:37041124-37041524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 46

               
               
               Conread position:62-352
               
               
               Cow position:chr3:83934210-83934496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):46, 175

               
               
               Conread position:62-367
               
               
               Cow position:chr3:18763590-18763893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):65, 116

               
               
               Conread position:62-427
               
               
               Cow position:chr3:12286932-12287293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):69, 8

               
               
               Conread position:62-444
               
               
               Cow position:chr3:66292478-66292088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 15

               
               
               Conread position:62-456
               
               
               Cow position:chr3:70401599-70401996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 51

               
               
               Conread position:62-465
               
               
               Cow position:chr3:2518841-2518428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):65, 136

               
               
               Conread position:63-284
               
               
               Cow position:chr3:19198378-19198592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):65, 162

               
               
               Conread position:63-460
               
               
               Cow position:chr3:53909811-53910212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 35

               
               
               Conread position:66-408
               
               
               Cow position:chr3:30463466-30463120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 169

               
               
               Conread position:66-445
               
               
               Cow position:chr3:82020149-82019750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 182

               
               
               Conread position:66-446
               
               
               Cow position:chr3:45647835-45648220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:268
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):16, 123

               
               
               Conread position:70-347
               
               
               Cow position:chr3:25691452-25691734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):5, 244

               
               
               Conread position:70-450
               
               
               Cow position:chr3:74533051-74533443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:258
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):5, 129

               
               
               Conread position:72-294
               
               
               Cow position:chr3:79148570-79148341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:73-459
               
               
               Cow position:chr3:27274247-27274631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:265
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):222, 52

               
               
               Conread position:77-405
               
               
               Cow position:chr3:17957178-17957516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:236
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):153, 103

               
               
               Conread position:77-435
               
               
               Cow position:chr3:56658-56298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:262
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):51, 40

               
               
               Conread position:77-449
               
               
               Cow position:chr3:15229108-15228729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):51, 103

               
               
               Conread position:77-450
               
               
               Cow position:chr3:45647388-45647774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:263
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):31, 18

               
               
               Conread position:77-451
               
               
               Cow position:chr3:63179579-63179937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 104

               
               
               Conread position:77-452
               
               
               Cow position:chr3:9641275-9641664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:263
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):51, 150

               
               
               Conread position:77-453
               
               
               Cow position:chr3:29360424-29360054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):79, 47

               
               
               Conread position:77-457
               
               
               Cow position:chr3:5096914-5097307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 110

               
               
               Conread position:77-457
               
               
               Cow position:chr3:54740160-54739786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:77-457
               
               
               Cow position:chr3:68708290-68707912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 49

               
               
               Conread position:77-457
               
               
               Cow position:chr3:68881398-68881021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:263
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):114, 49

               
               
               Conread position:77-458
               
               
               Cow position:chr3:13330061-13329684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:265
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):51, 38

               
               
               Conread position:77-460
               
               
               Cow position:chr3:21081674-21081282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):121, 188

               
               
               Conread position:77-460
               
               
               Cow position:chr3:58540819-58540416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:276
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):114, 40

               
               
               Conread position:77-460
               
               
               Cow position:chr3:65413564-65413173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:77-460
               
               
               Cow position:chr3:78894603-78894237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):51, 95

               
               
               Conread position:77-460
               
               
               Cow position:chr3:78946128-78945735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:77-466
               
               
               Cow position:chr3:3985041-3985431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 115

               
               
               Conread position:77-466
               
               
               Cow position:chr3:23471757-23471348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 191

               
               
               Conread position:77-467
               
               
               Cow position:chr3:29812955-29813341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:77-469
               
               
               Cow position:chr3:15158752-15159144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):50, 149

               
               
               Conread position:77-470
               
               
               Cow position:chr3:45534588-45534187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):51, 38

               
               
               Conread position:78-290
               
               
               Cow position:chr3:56704825-56704620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):50, 86

               
               
               Conread position:78-373
               
               
               Cow position:chr3:71430499-71430195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):50, 10

               
               
               Conread position:78-419
               
               
               Cow position:chr3:73759807-73759454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):30, 52

               
               
               Conread position:78-453
               
               
               Cow position:chr3:38691692-38691309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 8

               
               
               Conread position:78-453
               
               
               Cow position:chr3:56059519-56059908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:264
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):50, 97

               
               
               Conread position:78-458
               
               
               Cow position:chr3:53739481-53739085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 139

               
               
               Conread position:78-458
               
               
               Cow position:chr3:64281224-64280829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 150

               
               
               Conread position:78-460
               
               
               Cow position:chr3:14602001-14601600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:78-466
               
               
               Cow position:chr3:39970160-39969748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 152

               
               
               Conread position:78-476
               
               
               Cow position:chr3:8393645-8394066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:286
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):10, 139

               
               
               Conread position:79-453
               
               
               Cow position:chr3:73443374-73442999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 147

               
               
               Conread position:79-459
               
               
               Cow position:chr3:73467332-73467738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 74

               
               
               Conread position:79-463
               
               
               Cow position:chr3:17895567-17895956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:279
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):49, 83

               
               
               Conread position:79-465
               
               
               Cow position:chr3:23408629-23408249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:80-439
               
               
               Cow position:chr3:4031682-4032046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):47, 148

               
               
               Conread position:80-448
               
               
               Cow position:chr3:64172159-64172532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:252
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):48, 89

               
               
               Conread position:80-465
               
               
               Cow position:chr3:33253164-33252778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:274
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):34, 19

               
               
               Conread position:82-368
               
               
               Cow position:chr3:84000327-84000617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):16, 47

               
               
               Conread position:82-446
               
               
               Cow position:chr3:67744912-67744538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:267
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):46, 149

               
               
               Conread position:82-453
               
               
               Cow position:chr3:3738207-3738578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):94, 32

               
               
               Conread position:82-481
               
               
               Cow position:chr3:52863467-52863058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 31

               
               
               Conread position:83-464
               
               
               Cow position:chr3:26682076-26681702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):44, 30

               
               
               Conread position:84-452
               
               
               Cow position:chr3:39171766-39171390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:252
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):44, 143

               
               
               Conread position:84-452
               
               
               Cow position:chr3:59208532-59208890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 142

               
               
               Conread position:84-460
               
               
               Cow position:chr3:66901024-66900629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:272
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):44, 195

               
               
               Conread position:85-367
               
               
               Cow position:chr3:68583283-68583001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):43, 28

               
               
               Conread position:85-469
               
               
               Cow position:chr3:77365575-77365177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 78

               
               
               Conread position:86-358
               
               
               Cow position:chr3:63861181-63860895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):42, 200

               
               
               Conread position:86-458
               
               
               Cow position:chr3:53046937-53046561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 115

               
               
               Conread position:86-459
               
               
               Cow position:chr3:49482984-49482614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:263
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):140, 28

               
               
               Conread position:86-460
               
               
               Cow position:chr3:75158085-75158459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:255
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):42, 89

               
               
               Conread position:87-290
               
               
               Cow position:chr3:42588070-42588281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):41, 114

               
               
               Conread position:87-356
               
               
               Cow position:chr3:42483621-42483900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:87-445
               
               
               Cow position:chr3:44101702-44102056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):27, 72

               
               
               Conread position:87-458
               
               
               Cow position:chr3:57624184-57624566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:267
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):39, 97

               
               
               Conread position:88-434
               
               
               Cow position:chr3:42367767-42367436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):281, 37

               
               
               Conread position:88-440
               
               
               Cow position:chr3:5374057-5374412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 29

               
               
               Conread position:88-459
               
               
               Cow position:chr3:68627953-68627585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 92

               
               
               Conread position:90-453
               
               
               Cow position:chr3:6873521-6873155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 150

               
               
               Conread position:90-456
               
               
               Cow position:chr3:73764469-73764101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 34

               
               
               Conread position:92-459
               
               
               Cow position:chr3:75046144-75045773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:92-466
               
               
               Cow position:chr3:54945851-54946241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:269
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):99, 137

               
               
               Conread position:93-450
               
               
               Cow position:chr3:525081-525440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):35, 87

               
               
               Conread position:94-460
               
               
               Cow position:chr3:51578593-51578220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:269
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):33, 145

               
               
               Conread position:94-465
               
               
               Cow position:chr3:44932244-44932626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 21

               
               
               Conread position:96-460
               
               
               Cow position:chr3:13302126-13301747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):31, 226

               
               
               Conread position:96-460
               
               
               Cow position:chr3:70899630-70899994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):31, 107

               
               
               Conread position:99-288
               
               
               Cow position:chr3:59701746-59701931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 81

               
               
               Conread position:101-290
               
               
               Cow position:chr3:55970960-55971150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):31, 134

               
               
               Conread position:101-445
               
               
               Cow position:chr3:73394851-73395205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 212

               
               
               Conread position:102-452
               
               
               Cow position:chr3:73460715-73461062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):207, 88

               
               
               Conread position:105-458
               
               
               Cow position:chr3:51234357-51233995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 82

               
               
               Conread position:107-457
               
               
               Cow position:chr3:52607924-52608283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):21, 123

               
               
               Conread position:108-290
               
               
               Cow position:chr3:8604272-8604090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):20, 118

               
               
               Conread position:108-367
               
               
               Cow position:chr3:30009168-30008905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):20, 143

               
               
               Conread position:108-460
               
               
               Cow position:chr3:61143835-61144200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:109-399
               
               
               Cow position:chr3:22820312-22820614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 65

               
               
               Conread position:109-450
               
               
               Cow position:chr3:52652331-52651985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):19, 83

               
               
               Conread position:109-453
               
               
               Cow position:chr3:56476425-56476779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):19, 82

               
               
               Conread position:110-287
               
               
               Cow position:chr3:23269846-23270019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 66

               
               
               Conread position:110-460
               
               
               Cow position:chr3:2680255-2680617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:245
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:111-458
               
               
               Cow position:chr3:26970570-26970915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:235
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):23, 117

               
               
               Conread position:113-452
               
               
               Cow position:chr3:11711700-11712051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):14, 31

               
               
               Conread position:116-368
               
               
               Cow position:chr3:55947325-55947588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:118-367
               
               
               Cow position:chr3:16362986-16362732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:118-451
               
               
               Cow position:chr3:15752876-15752541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):15, 57

               
               
               Conread position:120-427
               
               
               Cow position:chr3:23445136-23444817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):8, 60

               
               
               Conread position:127-459
               
               
               Cow position:chr3:8733577-8733256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):183, 63

               
               
               Conread position:128-460
               
               
               Cow position:chr3:59621874-59621544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):171, 26

               
               
               Conread position:130-307
               
               
               Cow position:chr3:4861454-4861627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:130-307
               
               
               Cow position:chr3:29334749-29334570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:130-373
               
               
               Cow position:chr3:83201763-83201516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):61, 99

               
               
               Conread position:130-414
               
               
               Cow position:chr3:34937605-34937902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):51, 111

               
               
               Conread position:130-453
               
               
               Cow position:chr3:22232878-22232558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):164, 40

               
               
               Conread position:130-460
               
               
               Cow position:chr3:13507228-13507574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):48, 98

               
               
               Conread position:130-460
               
               
               Cow position:chr3:17447843-17447511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):239, 79

               
               
               Conread position:130-466
               
               
               Cow position:chr3:8060897-8061239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 32

               
               
               Conread position:130-466
               
               
               Cow position:chr3:18686681-18687016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):162, 39

               
               
               Conread position:130-466
               
               
               Cow position:chr3:55836064-55835710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):61, 99

               
               
               Conread position:130-469
               
               
               Cow position:chr3:70334936-70334582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):106, 9

               
               
               Conread position:132-373
               
               
               Cow position:chr3:55106676-55106430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:132-463
               
               
               Cow position:chr3:67930411-67930078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:241
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):7, 35

               
               
               Conread position:133-456
               
               
               Cow position:chr3:27940360-27940043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):237, 91

               
               
               Conread position:136-439
               
               
               Cow position:chr3:76015070-76015376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):154, 42

               
               
               Conread position:138-445
               
               
               Cow position:chr3:15506220-15506537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):53, 91

               
               
               Conread position:139-459
               
               
               Cow position:chr3:60265462-60265151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):125, 42

               
               
               Conread position:141-445
               
               
               Cow position:chr3:26960819-26960499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:141-457
               
               
               Cow position:chr3:74134481-74134805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):156, 84

               
               
               Conread position:142-483
               
               
               Cow position:chr3:18725858-18725517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):100, 79

               
               
               Conread position:143-459
               
               
               Cow position:chr3:83215031-83215365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:143-460
               
               
               Cow position:chr3:53240051-53240360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):149, 15

               
               
               Conread position:145-365
               
               
               Cow position:chr3:15859891-15859665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):46, 84

               
               
               Conread position:148-414
               
               
               Cow position:chr3:25944860-25945151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:148-460
               
               
               Cow position:chr3:46006248-46005917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):29, 268

               
               
               Conread position:149-373
               
               
               Cow position:chr3:35005561-35005785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):60, 48

               
               
               Conread position:149-460
               
               
               Cow position:chr3:4319494-4319814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):42, 105

               
               
               Conread position:150-423
               
               
               Cow position:chr3:78896433-78896714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):19, 60

               
               
               Conread position:150-466
               
               
               Cow position:chr3:25477597-25477907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 79

               
               
               Conread position:150-480
               
               
               Cow position:chr3:76713537-76713193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):83, 47

               
               
               Conread position:151-409
               
               
               Cow position:chr3:74878804-74878536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):88, 49

               
               
               Conread position:164-430
               
               
               Cow position:chr3:7940757-7940483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):128, 61

               
               
               Conread position:164-431
               
               
               Cow position:chr3:3637985-3638253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 157

               
               
               Conread position:164-446
               
               
               Cow position:chr3:27697184-27696888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 256

               
               
               Conread position:167-458
               
               
               Cow position:chr3:20678032-20677740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):129, 14

               
               
               Conread position:171-458
               
               
               Cow position:chr3:14598756-14599038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):141, 93

               
               
               Conread position:171-458
               
               
               Cow position:chr3:66884135-66883841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:171-459
               
               
               Cow position:chr3:57273872-57274164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):122, 54

               
               
               Conread position:171-465
               
               
               Cow position:chr3:38828572-38828867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):42, 145

               
               
               Conread position:171-465
               
               
               Cow position:chr3:74079833-74079524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:174-458
               
               
               Cow position:chr3:63269034-63269323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):118, 35

               
               
               Conread position:177-442
               
               
               Cow position:chr3:34669916-34669647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):119, 131

               
               
               Conread position:181-437
               
               
               Cow position:chr3:74502506-74502244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):52, 109

               
               
               Conread position:181-443
               
               
               Cow position:chr3:15751906-15751627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):110, 163

               
               
               Conread position:181-460
               
               
               Cow position:chr3:53318219-53318505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):118, 133

               
               
               Conread position:182-440
               
               
               Cow position:chr3:26981881-26982141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 131

               
               
               Conread position:184-415
               
               
               Cow position:chr3:81359294-81359048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 137

               
               
               Conread position:186-451
               
               
               Cow position:chr3:70762302-70762028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):110, 39

               
               
               Conread position:190-454
               
               
               Cow position:chr3:58765254-58764978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):11, 45

               
               
               Conread position:191-459
               
               
               Cow position:chr3:76268157-76267872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:191-466
               
               
               Cow position:chr3:55819573-55819864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 231

               
               
               Conread position:196-460
               
               
               Cow position:chr3:26874421-26874697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:197-456
               
               
               Cow position:chr3:54100891-54100626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):20, 115

               
               
               Conread position:197-460
               
               
               Cow position:chr3:48810805-48810540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):96, 28

               
               
               Conread position:197-461
               
               
               Cow position:chr3:24935203-24935469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):95, 6

               
               
               Conread position:198-453
               
               
               Cow position:chr3:35153454-35153714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:198-458
               
               
               Cow position:chr3:30222018-30222292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):28, 266

               
               
               Conread position:199-458
               
               
               Cow position:chr3:49790977-49790710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):114, 95

               
               
               Conread position:210-440
               
               
               Cow position:chr3:24872560-24872788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):84, 15

               
               
               Conread position:212-439
               
               
               Cow position:chr3:46541981-46541746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:212-458
               
               
               Cow position:chr3:19793746-19793489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):15, 197

               
               
               Conread position:213-459
               
               
               Cow position:chr3:77581956-77582210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):79, 95

               
               
               Conread position:213-460
               
               
               Cow position:chr3:59884225-59883964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:213-466
               
               
               Cow position:chr3:15153540-15153803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 12

               
               
               Conread position:216-460
               
               
               Cow position:chr3:22221170-22221433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):76, 31

               
               
               Conread position:216-469
               
               
               Cow position:chr3:24468528-24468272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):76, 22

               
               
               Conread position:224-466
               
               
               Cow position:chr3:8901504-8901739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):138, 11

               
               
               Conread position:225-437
               
               
               Cow position:chr3:1517655-1517431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:225-455
               
               
               Cow position:chr3:73820511-73820269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):67, 55

               
               
               Conread position:225-456
               
               
               Cow position:chr3:3889708-3889468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 69

               
               
               Conread position:225-460
               
               
               Cow position:chr3:48900479-48900229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):69, 33

               
               
               Conread position:236-459
               
               
               Cow position:chr3:14194309-14194077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 11

               
               
               Conread position:237-481
               
               
               Cow position:chr3:10103919-10104167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:238-460
               
               
               Cow position:chr3:17058669-17058440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):54, 77

               
               
               Conread position:238-460
               
               
               Cow position:chr3:32457072-32457297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):52, 70

               
               
               Conread position:238-460
               
               
               Cow position:chr3:84175954-84175718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:238-464
               
               
               Cow position:chr3:20993683-20993921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 102

               
               
               Conread position:238-469
               
               
               Cow position:chr3:7661724-7661967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:238-471
               
               
               Cow position:chr3:71238345-71238585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:241-451
               
               
               Cow position:chr3:16254949-16254746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):144, 36

               
               
               Conread position:241-459
               
               
               Cow position:chr3:35621177-35621405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:242-457
               
               
               Cow position:chr3:3649342-3649123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):110, 52

               
               
               Conread position:244-459
               
               
               Cow position:chr3:73298964-73299180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):130, 49

               
               
               Conread position:246-459
               
               
               Cow position:chr3:22509906-22510130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):51, 44

               
               
               Conread position:248-457
               
               
               Cow position:chr3:33693699-33693922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):48, 72

               
               
               Conread position:251-448
               
               
               Cow position:chr3:74846825-74846616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:251-460
               
               
               Cow position:chr3:58318069-58317844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:254-445
               
               
               Cow position:chr3:15443842-15443640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:254-450
               
               
               Cow position:chr3:60389655-60389859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):41, 57

               
               
               Conread position:257-460
               
               
               Cow position:chr3:55983985-55984202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:258-453
               
               
               Cow position:chr3:27727938-27727733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 37

               
               
               Conread position:258-469
               
               
               Cow position:chr3:65019974-65019754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):35, 55

               
               
               Conread position:260-460
               
               
               Cow position:chr3:3656407-3656621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:262-466
               
               
               Cow position:chr3:58527289-58527492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):30, 48

               
               
               Conread position:278-466
               
               
               Cow position:chr3:84250633-84250434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:302-444
               
               
               Cow position:chr3:11292313-11292160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:307-454
               
               
               Cow position:chr3:56704380-56704221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:310-453
               
               
               Cow position:chr3:67959970-67959823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:317-460
               
               
               Cow position:chr3:71423598-71423451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:325-460
               
               
               Cow position:chr3:82360244-82360372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:370-483
               
               
               Cow position:chr3:2179132-2179245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-367
               
               
               Cow position:chr4:61972822-61972443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:2-459
               
               
               Cow position:chr4:36893009-36893479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 7

               
               
               Conread position:4-460
               
               
               Cow position:chr4:32260193-32259720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 154

               
               
               Conread position:4-466
               
               
               Cow position:chr4:53125791-53126237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 124

               
               
               Conread position:5-267
               
               
               Cow position:chr4:19255979-19256235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-274
               
               
               Cow position:chr4:29813878-29813615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):81, 125

               
               
               Conread position:5-285
               
               
               Cow position:chr4:15623497-15623778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):45, 112

               
               
               Conread position:5-290
               
               
               Cow position:chr4:42232323-42232598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):147, 112

               
               
               Conread position:5-303
               
               
               Cow position:chr4:39009624-39009921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 72

               
               
               Conread position:5-305
               
               
               Cow position:chr4:6034436-6034129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:5-306
               
               
               Cow position:chr4:57555621-57555930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:5-343
               
               
               Cow position:chr4:3475273-3475626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 218

               
               
               Conread position:5-354
               
               
               Cow position:chr4:24119256-24118900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:5-354
               
               
               Cow position:chr4:43370195-43369839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 175

               
               
               Conread position:5-356
               
               
               Cow position:chr4:480352-479999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 223

               
               
               Conread position:5-356
               
               
               Cow position:chr4:11901905-11901552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 65

               
               
               Conread position:5-356
               
               
               Cow position:chr4:22850065-22849707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):38, 169

               
               
               Conread position:5-356
               
               
               Cow position:chr4:52167210-52166842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:5-358
               
               
               Cow position:chr4:48137569-48137923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 90

               
               
               Conread position:5-358
               
               
               Cow position:chr4:53999865-53999499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 219

               
               
               Conread position:5-358
               
               
               Cow position:chr4:56233347-56233693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 52

               
               
               Conread position:5-370
               
               
               Cow position:chr4:30779180-30778806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:252
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):122, 364

               
               
               Conread position:5-373
               
               
               Cow position:chr4:37620232-37619862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 94

               
               
               Conread position:5-390
               
               
               Cow position:chr4:64072693-64072304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:252
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):178, 44

               
               
               Conread position:5-414
               
               
               Cow position:chr4:23853860-23854255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 32

               
               
               Conread position:5-419
               
               
               Cow position:chr4:16799533-16799106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):127, 47

               
               
               Conread position:5-429
               
               
               Cow position:chr4:16602400-16601973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:294
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):16, 112

               
               
               Conread position:5-436
               
               
               Cow position:chr4:62983882-62983465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):123, 65

               
               
               Conread position:5-443
               
               
               Cow position:chr4:19313660-19314118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-445
               
               
               Cow position:chr4:1495746-1495303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:299
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):88, 83

               
               
               Conread position:5-445
               
               
               Cow position:chr4:10905801-10905364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 22

               
               
               Conread position:5-445
               
               
               Cow position:chr4:13668958-13668516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:307
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):122, 58

               
               
               Conread position:5-445
               
               
               Cow position:chr4:27276888-27276438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 203

               
               
               Conread position:5-448
               
               
               Cow position:chr4:61897877-61897426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 91

               
               
               Conread position:5-450
               
               
               Cow position:chr4:3850212-3850662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 52

               
               
               Conread position:5-450
               
               
               Cow position:chr4:38952214-38952666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 108

               
               
               Conread position:5-452
               
               
               Cow position:chr4:65816037-65815595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 165

               
               
               Conread position:5-453
               
               
               Cow position:chr4:25369774-25370218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 63

               
               
               Conread position:5-453
               
               
               Cow position:chr4:53207963-53208407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:305
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):123, 46

               
               
               Conread position:5-455
               
               
               Cow position:chr4:27755650-27755185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 72

               
               
               Conread position:5-456
               
               
               Cow position:chr4:22101610-22101148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 41

               
               
               Conread position:5-456
               
               
               Cow position:chr4:38999089-38999540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 54

               
               
               Conread position:5-456
               
               
               Cow position:chr4:49794337-49794775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 15

               
               
               Conread position:5-457
               
               
               Cow position:chr4:41301345-41300880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 312

               
               
               Conread position:5-457
               
               
               Cow position:chr4:58248066-58248519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 71

               
               
               Conread position:5-458
               
               
               Cow position:chr4:23655649-23656088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:316
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):145, 119

               
               
               Conread position:5-458
               
               
               Cow position:chr4:56240191-56239742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 182

               
               
               Conread position:5-459
               
               
               Cow position:chr4:22138579-22138097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 43

               
               
               Conread position:5-459
               
               
               Cow position:chr4:31023101-31023564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 40

               
               
               Conread position:5-459
               
               
               Cow position:chr4:42424145-42423685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:307
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):123, 28

               
               
               Conread position:5-459
               
               
               Cow position:chr4:44839228-44838771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 36

               
               
               Conread position:5-460
               
               
               Cow position:chr4:10055866-10056323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 176

               
               
               Conread position:5-460
               
               
               Cow position:chr4:11872257-11871801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 234

               
               
               Conread position:5-460
               
               
               Cow position:chr4:12903472-12903943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 64

               
               
               Conread position:5-460
               
               
               Cow position:chr4:16239484-16239048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:303
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):41, 62

               
               
               Conread position:5-460
               
               
               Cow position:chr4:19096950-19097408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 61

               
               
               Conread position:5-460
               
               
               Cow position:chr4:19541777-19542253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:322
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):77, 50

               
               
               Conread position:5-460
               
               
               Cow position:chr4:19584359-19584828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 324

               
               
               Conread position:5-460
               
               
               Cow position:chr4:34383695-34383219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:317
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):63, 178

               
               
               Conread position:5-460
               
               
               Cow position:chr4:44782029-44782495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 167

               
               
               Conread position:5-460
               
               
               Cow position:chr4:45644658-45644195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 226

               
               
               Conread position:5-460
               
               
               Cow position:chr4:47510055-47510505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:278
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):64, 74

               
               
               Conread position:5-460
               
               
               Cow position:chr4:51783826-51784301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 197

               
               
               Conread position:5-460
               
               
               Cow position:chr4:51850854-51851335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:322
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):109, 32

               
               
               Conread position:5-460
               
               
               Cow position:chr4:54190763-54191212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 32

               
               
               Conread position:5-460
               
               
               Cow position:chr4:59871160-59871592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 70

               
               
               Conread position:5-464
               
               
               Cow position:chr4:12591555-12591085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 30

               
               
               Conread position:5-465
               
               
               Cow position:chr4:21392142-21391683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 54

               
               
               Conread position:5-465
               
               
               Cow position:chr4:40414976-40414498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 157

               
               
               Conread position:5-466
               
               
               Cow position:chr4:10731875-10732351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 28

               
               
               Conread position:5-466
               
               
               Cow position:chr4:23647187-23646739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 8

               
               
               Conread position:5-466
               
               
               Cow position:chr4:33097303-33096854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:317
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):123, 15

               
               
               Conread position:5-466
               
               
               Cow position:chr4:62471723-62472210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 225

               
               
               Conread position:5-469
               
               
               Cow position:chr4:21531974-21531514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:319
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):20, 40

               
               
               Conread position:5-469
               
               
               Cow position:chr4:22236820-22236352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:320
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:6-284
               
               
               Cow position:chr4:7249913-7249635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 171

               
               
               Conread position:6-306
               
               
               Cow position:chr4:67392617-67392918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):70, 31

               
               
               Conread position:6-314
               
               
               Cow position:chr4:54501793-54501482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 218

               
               
               Conread position:6-345
               
               
               Cow position:chr4:11100008-11099669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):122, 27

               
               
               Conread position:6-367
               
               
               Cow position:chr4:11201476-11201840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 62

               
               
               Conread position:6-369
               
               
               Cow position:chr4:285312-285666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):18, 81

               
               
               Conread position:6-377
               
               
               Cow position:chr4:22051812-22051442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 81

               
               
               Conread position:6-412
               
               
               Cow position:chr4:39231867-39231451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 237

               
               
               Conread position:6-434
               
               
               Cow position:chr4:51898658-51899101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 233

               
               
               Conread position:6-444
               
               
               Cow position:chr4:20583-21017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 40

               
               
               Conread position:6-445
               
               
               Cow position:chr4:60897617-60897177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 197

               
               
               Conread position:6-446
               
               
               Cow position:chr4:9445033-9444580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 109

               
               
               Conread position:6-450
               
               
               Cow position:chr4:15904757-15905213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 69

               
               
               Conread position:6-453
               
               
               Cow position:chr4:26323398-26323854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 62

               
               
               Conread position:6-457
               
               
               Cow position:chr4:3388204-3388661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 113

               
               
               Conread position:6-463
               
               
               Cow position:chr4:45577-46028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 53

               
               
               Conread position:6-469
               
               
               Cow position:chr4:13589750-13590213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 62

               
               
               Conread position:6-469
               
               
               Cow position:chr4:48152714-48152245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 224

               
               
               Conread position:6-480
               
               
               Cow position:chr4:46059085-46058633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:318
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):71, 109

               
               
               Conread position:7-458
               
               
               Cow position:chr4:68387452-68387913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 60

               
               
               Conread position:8-460
               
               
               Cow position:chr4:68076870-68076418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 105

               
               
               Conread position:9-290
               
               
               Cow position:chr4:30574115-30574391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 165

               
               
               Conread position:9-373
               
               
               Cow position:chr4:53208898-53209263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 106

               
               
               Conread position:9-458
               
               
               Cow position:chr4:62772278-62771804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 229

               
               
               Conread position:9-459
               
               
               Cow position:chr4:42672830-42673296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 221

               
               
               Conread position:9-462
               
               
               Cow position:chr4:15635784-15635322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:306
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):116, 135

               
               
               Conread position:9-468
               
               
               Cow position:chr4:6653399-6653850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 90

               
               
               Conread position:9-475
               
               
               Cow position:chr4:23526350-23526829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 188

               
               
               Conread position:10-453
               
               
               Cow position:chr4:26400617-26401070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 103

               
               
               Conread position:10-460
               
               
               Cow position:chr4:68764177-68764634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 128

               
               
               Conread position:13-274
               
               
               Cow position:chr4:14742922-14743186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:13-343
               
               
               Cow position:chr4:16736169-16736497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):115, 55

               
               
               Conread position:13-449
               
               
               Cow position:chr4:45589924-45589491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 105

               
               
               Conread position:13-456
               
               
               Cow position:chr4:25879060-25879507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 57

               
               
               Conread position:13-459
               
               
               Cow position:chr4:65650458-65650013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 62

               
               
               Conread position:13-460
               
               
               Cow position:chr4:65919285-65919729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 65

               
               
               Conread position:13-476
               
               
               Cow position:chr4:13327291-13326817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 51

               
               
               Conread position:14-279
               
               
               Cow position:chr4:43543070-43542799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:14-448
               
               
               Cow position:chr4:45235202-45234764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 166

               
               
               Conread position:14-459
               
               
               Cow position:chr4:34166301-34165859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 52

               
               
               Conread position:15-287
               
               
               Cow position:chr4:10992534-10992261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):112, 60

               
               
               Conread position:16-444
               
               
               Cow position:chr4:12003889-12004319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 166

               
               
               Conread position:16-469
               
               
               Cow position:chr4:24372185-24371730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 194

               
               
               Conread position:19-460
               
               
               Cow position:chr4:34209695-34210154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 424

               
               
               Conread position:20-460
               
               
               Cow position:chr4:509228-508787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 144

               
               
               Conread position:21-466
               
               
               Cow position:chr4:570467-570921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 98

               
               
               Conread position:23-440
               
               
               Cow position:chr4:12048921-12049347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:291
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):105, 45

               
               
               Conread position:24-290
               
               
               Cow position:chr4:21064327-21064065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):104, 42

               
               
               Conread position:24-443
               
               
               Cow position:chr4:22073637-22073220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 91

               
               
               Conread position:24-466
               
               
               Cow position:chr4:22010384-22009930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 69

               
               
               Conread position:24-466
               
               
               Cow position:chr4:37915655-37915207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 79

               
               
               Conread position:27-358
               
               
               Cow position:chr4:19561372-19561691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):100, 70

               
               
               Conread position:27-431
               
               
               Cow position:chr4:30974014-30974425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 86

               
               
               Conread position:27-446
               
               
               Cow position:chr4:37935604-37935178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 165

               
               
               Conread position:33-459
               
               
               Cow position:chr4:23599856-23600289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 25

               
               
               Conread position:34-453
               
               
               Cow position:chr4:45738795-45738361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 34

               
               
               Conread position:37-368
               
               
               Cow position:chr4:49424534-49424847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):91, 9

               
               
               Conread position:37-373
               
               
               Cow position:chr4:60371145-60370800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:243
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):75, 31

               
               
               Conread position:42-445
               
               
               Cow position:chr4:49159081-49158689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):156, 26

               
               
               Conread position:42-460
               
               
               Cow position:chr4:23451404-23450973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 150

               
               
               Conread position:42-465
               
               
               Cow position:chr4:19434953-19435381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 73

               
               
               Conread position:42-465
               
               
               Cow position:chr4:59785006-59785450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:43-458
               
               
               Cow position:chr4:45662807-45662394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 128

               
               
               Conread position:48-290
               
               
               Cow position:chr4:46668271-46668507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):80, 20

               
               
               Conread position:48-465
               
               
               Cow position:chr4:48961792-48961358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):80, 188

               
               
               Conread position:52-452
               
               
               Cow position:chr4:19582914-19582503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:278
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):56, 115

               
               
               Conread position:57-358
               
               
               Cow position:chr4:41097627-41097931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:61-445
               
               
               Cow position:chr4:56570514-56570912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 54

               
               
               Conread position:62-453
               
               
               Cow position:chr4:36730902-36731304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:276
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):66, 182

               
               
               Conread position:62-457
               
               
               Cow position:chr4:39128243-39128655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 24

               
               
               Conread position:63-460
               
               
               Cow position:chr4:45775628-45775215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 52

               
               
               Conread position:64-373
               
               
               Cow position:chr4:17474151-17474465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):75, 62

               
               
               Conread position:66-290
               
               
               Cow position:chr4:42267026-42266812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):66, 113

               
               
               Conread position:66-479
               
               
               Cow position:chr4:18095960-18095533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 56

               
               
               Conread position:69-452
               
               
               Cow position:chr4:54937605-54938007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:276
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):59, 130

               
               
               Conread position:70-458
               
               
               Cow position:chr4:17052876-17052474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):58, 16

               
               
               Conread position:74-441
               
               
               Cow position:chr4:203424-203043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:256
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):34, 171

               
               
               Conread position:74-469
               
               
               Cow position:chr4:15439321-15439712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:272
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):54, 19

               
               
               Conread position:77-372
               
               
               Cow position:chr4:1405267-1405557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):50, 87

               
               
               Conread position:77-404
               
               
               Cow position:chr4:63349749-63349420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):12, 69

               
               
               Conread position:77-405
               
               
               Cow position:chr4:54930689-54930356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):51, 62

               
               
               Conread position:77-414
               
               
               Cow position:chr4:51739976-51739642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):51, 100

               
               
               Conread position:77-419
               
               
               Cow position:chr4:11021924-11021571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 98

               
               
               Conread position:77-453
               
               
               Cow position:chr4:27529840-27530232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 153

               
               
               Conread position:77-460
               
               
               Cow position:chr4:44612730-44613124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:77-469
               
               
               Cow position:chr4:46456320-46455939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 38

               
               
               Conread position:78-356
               
               
               Cow position:chr4:54975036-54975305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):50, 102

               
               
               Conread position:78-368
               
               
               Cow position:chr4:4321278-4320981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):50, 236

               
               
               Conread position:78-431
               
               
               Cow position:chr4:33395960-33395606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):236, 48

               
               
               Conread position:78-450
               
               
               Cow position:chr4:29805630-29805263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:78-459
               
               
               Cow position:chr4:21874562-21874922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):50, 12

               
               
               Conread position:78-460
               
               
               Cow position:chr4:52748730-52748336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 148

               
               
               Conread position:78-461
               
               
               Cow position:chr4:47348560-47348948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 62

               
               
               Conread position:79-339
               
               
               Cow position:chr4:20298998-20299267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):35, 136

               
               
               Conread position:79-470
               
               
               Cow position:chr4:23509318-23509724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 14

               
               
               Conread position:80-407
               
               
               Cow position:chr4:33623448-33623781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):47, 197

               
               
               Conread position:81-378
               
               
               Cow position:chr4:63119500-63119208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):46, 83

               
               
               Conread position:82-458
               
               
               Cow position:chr4:19744621-19744994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:268
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):109, 41

               
               
               Conread position:82-472
               
               
               Cow position:chr4:46597115-46597503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:83-460
               
               
               Cow position:chr4:23847318-23846931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 146

               
               
               Conread position:83-460
               
               
               Cow position:chr4:34630635-34631020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:276
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):45, 30

               
               
               Conread position:83-465
               
               
               Cow position:chr4:8769843-8770224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):44, 32

               
               
               Conread position:83-474
               
               
               Cow position:chr4:43895070-43894682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:84-306
               
               
               Cow position:chr4:54667957-54667729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:84-366
               
               
               Cow position:chr4:25359339-25359617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):37, 213

               
               
               Conread position:84-457
               
               
               Cow position:chr4:19699833-19700213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:265
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):39, 158

               
               
               Conread position:84-460
               
               
               Cow position:chr4:46591396-46591789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:85-352
               
               
               Cow position:chr4:26746219-26746488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:86-343
               
               
               Cow position:chr4:1237380-1237118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):105, 92

               
               
               Conread position:86-437
               
               
               Cow position:chr4:31348458-31348091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):42, 158

               
               
               Conread position:86-440
               
               
               Cow position:chr4:37691572-37691211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):46, 78

               
               
               Conread position:86-445
               
               
               Cow position:chr4:32725960-32726330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:259
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):102, 40

               
               
               Conread position:86-448
               
               
               Cow position:chr4:40823379-40823004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):42, 135

               
               
               Conread position:86-459
               
               
               Cow position:chr4:19316261-19315887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:265
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):206, 38

               
               
               Conread position:86-476
               
               
               Cow position:chr4:55395504-55395897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:275
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):42, 90

               
               
               Conread position:87-444
               
               
               Cow position:chr4:23445314-23444942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:260
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:87-449
               
               
               Cow position:chr4:961926-961541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:269
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):41, 57

               
               
               Conread position:87-460
               
               
               Cow position:chr4:31004667-31004288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):41, 19

               
               
               Conread position:87-469
               
               
               Cow position:chr4:54455605-54455214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:266
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):41, 9

               
               
               Conread position:87-469
               
               
               Cow position:chr4:66548016-66547637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):41, 69

               
               
               Conread position:88-290
               
               
               Cow position:chr4:43909490-43909683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):39, 76

               
               
               Conread position:88-314
               
               
               Cow position:chr4:26307762-26307535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 125

               
               
               Conread position:88-353
               
               
               Cow position:chr4:47289808-47290084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:89-398
               
               
               Cow position:chr4:51866733-51867051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):25, 138

               
               
               Conread position:89-445
               
               
               Cow position:chr4:34310716-34310354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 344

               
               
               Conread position:91-275
               
               
               Cow position:chr4:2536574-2536756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:91-368
               
               
               Cow position:chr4:35940270-35939986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):41, 22

               
               
               Conread position:92-290
               
               
               Cow position:chr4:12260040-12259841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):22, 170

               
               
               Conread position:92-414
               
               
               Cow position:chr4:27664747-27665088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):35, 253

               
               
               Conread position:93-354
               
               
               Cow position:chr4:33357674-33357943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:93-429
               
               
               Cow position:chr4:59008626-59008265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):35, 20

               
               
               Conread position:93-460
               
               
               Cow position:chr4:45367479-45367860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:260
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):140, 33

               
               
               Conread position:93-472
               
               
               Cow position:chr4:45583385-45582987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:94-447
               
               
               Cow position:chr4:42922102-42921752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):34, 86

               
               
               Conread position:96-458
               
               
               Cow position:chr4:20157667-20157299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:262
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):17, 79

               
               
               Conread position:96-458
               
               
               Cow position:chr4:49089540-49089905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):32, 88

               
               
               Conread position:96-466
               
               
               Cow position:chr4:12676559-12676926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 17

               
               
               Conread position:99-457
               
               
               Cow position:chr4:13255845-13256195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:261
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):132, 14

               
               
               Conread position:101-460
               
               
               Cow position:chr4:58881215-58880839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):32, 12

               
               
               Conread position:101-490
               
               
               Cow position:chr4:22724876-22725241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:103-414
               
               
               Cow position:chr4:21233118-21232799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):25, 63

               
               
               Conread position:103-451
               
               
               Cow position:chr4:29291275-29291626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 61

               
               
               Conread position:104-445
               
               
               Cow position:chr4:11897545-11897200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:241
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):24, 88

               
               
               Conread position:104-467
               
               
               Cow position:chr4:56590785-56591167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:259
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:105-311
               
               
               Cow position:chr4:46370565-46370779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:105-459
               
               
               Cow position:chr4:26659060-26659420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):23, 43

               
               
               Conread position:107-460
               
               
               Cow position:chr4:37502578-37502934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):21, 69

               
               
               Conread position:107-461
               
               
               Cow position:chr4:12127886-12127517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):21, 218

               
               
               Conread position:110-457
               
               
               Cow position:chr4:2601991-2602348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):81, 320

               
               
               Conread position:113-408
               
               
               Cow position:chr4:44973408-44973703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):124, 11

               
               
               Conread position:116-356
               
               
               Cow position:chr4:46501120-46501353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 76

               
               
               Conread position:118-280
               
               
               Cow position:chr4:41908024-41907862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 108

               
               
               Conread position:118-290
               
               
               Cow position:chr4:23911821-23911643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):10, 26

               
               
               Conread position:118-367
               
               
               Cow position:chr4:19463258-19463516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):10, 113

               
               
               Conread position:130-356
               
               
               Cow position:chr4:27687704-27687936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:130-368
               
               
               Cow position:chr4:43750031-43749792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):61, 97

               
               
               Conread position:130-444
               
               
               Cow position:chr4:10999923-10999610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):162, 123

               
               
               Conread position:130-453
               
               
               Cow position:chr4:13222395-13222073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):162, 79

               
               
               Conread position:130-484
               
               
               Cow position:chr4:16762951-16762581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):61, 107

               
               
               Conread position:133-353
               
               
               Cow position:chr4:36724826-36725047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):161, 46

               
               
               Conread position:137-489
               
               
               Cow position:chr4:13941246-13941610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 86

               
               
               Conread position:141-463
               
               
               Cow position:chr4:36929105-36929428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):50, 96

               
               
               Conread position:143-459
               
               
               Cow position:chr4:51768906-51769224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 103

               
               
               Conread position:143-460
               
               
               Cow position:chr4:38944471-38944135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:144-458
               
               
               Cow position:chr4:29384424-29384116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):137, 47

               
               
               Conread position:144-466
               
               
               Cow position:chr4:16593878-16594209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):148, 93

               
               
               Conread position:145-373
               
               
               Cow position:chr4:28543805-28543586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):145, 118

               
               
               Conread position:146-460
               
               
               Cow position:chr4:13974175-13973847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):54, 173

               
               
               Conread position:147-436
               
               
               Cow position:chr4:29106697-29107003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):44, 297

               
               
               Conread position:151-463
               
               
               Cow position:chr4:43515524-43515840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):40, 91

               
               
               Conread position:152-463
               
               
               Cow position:chr4:65175341-65175021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):8, 107

               
               
               Conread position:165-446
               
               
               Cow position:chr4:10378926-10379218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):131, 19

               
               
               Conread position:166-459
               
               
               Cow position:chr4:4843430-4843121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 163

               
               
               Conread position:166-465
               
               
               Cow position:chr4:22713673-22713364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):162, 5

               
               
               Conread position:172-460
               
               
               Cow position:chr4:32459043-32458739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):19, 32

               
               
               Conread position:174-466
               
               
               Cow position:chr4:27632274-27632574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):17, 52

               
               
               Conread position:177-445
               
               
               Cow position:chr4:69543006-69543288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:177-460
               
               
               Cow position:chr4:20147013-20147304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):17, 47

               
               
               Conread position:180-460
               
               
               Cow position:chr4:19501253-19500970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):112, 45

               
               
               Conread position:181-450
               
               
               Cow position:chr4:34369621-34369340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):58, 41

               
               
               Conread position:183-452
               
               
               Cow position:chr4:65950481-65950767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):5, 27

               
               
               Conread position:186-458
               
               
               Cow position:chr4:17186516-17186232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):73, 39

               
               
               Conread position:192-481
               
               
               Cow position:chr4:48172981-48173280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):28, 20

               
               
               Conread position:196-460
               
               
               Cow position:chr4:59377761-59378030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):174, 29

               
               
               Conread position:196-466
               
               
               Cow position:chr4:36290475-36290753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):100, 29

               
               
               Conread position:197-465
               
               
               Cow position:chr4:9925784-9925501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):30, 119

               
               
               Conread position:198-460
               
               
               Cow position:chr4:47262381-47262656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:204-460
               
               
               Cow position:chr4:37732634-37732360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:212-373
               
               
               Cow position:chr4:4826988-4827151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):19, 79

               
               
               Conread position:212-445
               
               
               Cow position:chr4:54524467-54524239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):101, 13

               
               
               Conread position:212-460
               
               
               Cow position:chr4:37313033-37313288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:213-479
               
               
               Cow position:chr4:33091243-33091513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):156, 79

               
               
               Conread position:216-453
               
               
               Cow position:chr4:61313341-61313099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):154, 24

               
               
               Conread position:218-457
               
               
               Cow position:chr4:48396926-48396678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):143, 102

               
               
               Conread position:219-460
               
               
               Cow position:chr4:16814261-16814505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):150, 71

               
               
               Conread position:224-428
               
               
               Cow position:chr4:11610751-11610959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):68, 16

               
               
               Conread position:226-459
               
               
               Cow position:chr4:45073939-45074179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 96

               
               
               Conread position:227-460
               
               
               Cow position:chr4:45013287-45013056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):72, 193

               
               
               Conread position:238-459
               
               
               Cow position:chr4:11380172-11380399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:238-459
               
               
               Cow position:chr4:52779740-52779972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:238-460
               
               
               Cow position:chr4:45636052-45636289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 21

               
               
               Conread position:241-452
               
               
               Cow position:chr4:61066665-61066878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):51, 120

               
               
               Conread position:241-460
               
               
               Cow position:chr4:37675506-37675735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):51, 109

               
               
               Conread position:254-458
               
               
               Cow position:chr4:45563646-45563865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 82

               
               
               Conread position:255-466
               
               
               Cow position:chr4:32693689-32693919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:257-469
               
               
               Cow position:chr4:44773139-44772913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:258-458
               
               
               Cow position:chr4:19102977-19102763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 87

               
               
               Conread position:260-445
               
               
               Cow position:chr4:24481760-24481567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):29, 56

               
               
               Conread position:260-460
               
               
               Cow position:chr4:64657386-64657182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):32, 170

               
               
               Conread position:265-460
               
               
               Cow position:chr4:19098380-19098593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:270-467
               
               
               Cow position:chr4:45626703-45626500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):24, 41

               
               
               Conread position:272-459
               
               
               Cow position:chr4:45705967-45706158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):20, 44

               
               
               Conread position:274-463
               
               
               Cow position:chr4:54921164-54920964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:278-457
               
               
               Cow position:chr4:4277742-4277557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:278-460
               
               
               Cow position:chr4:20142980-20142791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):14, 127

               
               
               Conread position:324-458
               
               
               Cow position:chr4:46702681-46702539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:324-460
               
               
               Cow position:chr4:28753608-28753744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 44

               
               
               Conread position:324-465
               
               
               Cow position:chr4:42232046-42231898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:344-458
               
               
               Cow position:chr4:59015589-59015707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:349-466
               
               
               Cow position:chr4:56805182-56805303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:2-459
               
               
               Cow position:chr5:37377554-37378005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 8

               
               
               Conread position:2-469
               
               
               Cow position:chr5:44752626-44752144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 7

               
               
               Conread position:3-466
               
               
               Cow position:chr5:30276381-30276852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 100

               
               
               Conread position:5-230
               
               
               Cow position:chr5:63967953-63967733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):127, 34

               
               
               Conread position:5-290
               
               
               Cow position:chr5:1338211-1337925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):122, 49

               
               
               Conread position:5-290
               
               
               Cow position:chr5:30816403-30816692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:5-306
               
               
               Cow position:chr5:42747850-42748149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):190, 39

               
               
               Conread position:5-317
               
               
               Cow position:chr5:26505715-26505401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):122, 51

               
               
               Conread position:5-344
               
               
               Cow position:chr5:62827067-62826722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 118

               
               
               Conread position:5-354
               
               
               Cow position:chr5:34915829-34916171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 109

               
               
               Conread position:5-356
               
               
               Cow position:chr5:16184780-16185130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-356
               
               
               Cow position:chr5:34115336-34115695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:257
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):73, 183

               
               
               Conread position:5-367
               
               
               Cow position:chr5:28330641-28330291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 58

               
               
               Conread position:5-373
               
               
               Cow position:chr5:41951393-41951037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:258
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:5-436
               
               
               Cow position:chr5:15598545-15598108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:5-436
               
               
               Cow position:chr5:19813532-19813090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:304
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):81, 63

               
               
               Conread position:5-436
               
               
               Cow position:chr5:28927909-28927464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 237

               
               
               Conread position:5-439
               
               
               Cow position:chr5:27154712-27155138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:289
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):84, 50

               
               
               Conread position:5-442
               
               
               Cow position:chr5:6528368-6528821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 276

               
               
               Conread position:5-444
               
               
               Cow position:chr5:34463901-34463442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:312
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):71, 114

               
               
               Conread position:5-445
               
               
               Cow position:chr5:14550899-14550445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 290

               
               
               Conread position:5-445
               
               
               Cow position:chr5:34528252-34528685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-449
               
               
               Cow position:chr5:50821476-50821926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 154

               
               
               Conread position:5-451
               
               
               Cow position:chr5:65933241-65932798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 124

               
               
               Conread position:5-452
               
               
               Cow position:chr5:15363581-15364028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:306
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:5-452
               
               
               Cow position:chr5:58855790-58856248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 110

               
               
               Conread position:5-453
               
               
               Cow position:chr5:26377976-26377521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 63

               
               
               Conread position:5-456
               
               
               Cow position:chr5:30302586-30303041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 119

               
               
               Conread position:5-457
               
               
               Cow position:chr5:17027786-17028246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:301
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):189, 110

               
               
               Conread position:5-457
               
               
               Cow position:chr5:50599754-50600199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):186, 107

               
               
               Conread position:5-457
               
               
               Cow position:chr5:52165491-52165028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 54

               
               
               Conread position:5-458
               
               
               Cow position:chr5:37190405-37189945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:304
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):189, 63

               
               
               Conread position:5-458
               
               
               Cow position:chr5:46104252-46103809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:300
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):76, 204

               
               
               Conread position:5-459
               
               
               Cow position:chr5:16206454-16206002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 86

               
               
               Conread position:5-459
               
               
               Cow position:chr5:42777463-42777904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:303
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):121, 63

               
               
               Conread position:5-459
               
               
               Cow position:chr5:47601499-47601965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 114

               
               
               Conread position:5-460
               
               
               Cow position:chr5:37942105-37941653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 181

               
               
               Conread position:5-460
               
               
               Cow position:chr5:39447847-39447376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 226

               
               
               Conread position:5-460
               
               
               Cow position:chr5:44994357-44993895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 116

               
               
               Conread position:5-460
               
               
               Cow position:chr5:50722735-50723204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 140

               
               
               Conread position:5-460
               
               
               Cow position:chr5:64524191-64523708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 54

               
               
               Conread position:5-460
               
               
               Cow position:chr5:66257334-66257792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 19

               
               
               Conread position:5-463
               
               
               Cow position:chr5:66338774-66339234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 66

               
               
               Conread position:5-464
               
               
               Cow position:chr5:12323106-12322647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:302
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):123, 54

               
               
               Conread position:5-466
               
               
               Cow position:chr5:55176580-55177047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 81

               
               
               Conread position:5-466
               
               
               Cow position:chr5:62172094-62172570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:321
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):64, 199

               
               
               Conread position:5-469
               
               
               Cow position:chr5:16894081-16893609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 69

               
               
               Conread position:5-473
               
               
               Cow position:chr5:67932776-67932305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 111

               
               
               Conread position:6-278
               
               
               Cow position:chr5:56442971-56443247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):138, 31

               
               
               Conread position:6-289
               
               
               Cow position:chr5:45705736-45706018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 219

               
               
               Conread position:6-290
               
               
               Cow position:chr5:20555060-20554774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 109

               
               
               Conread position:6-361
               
               
               Cow position:chr5:21944070-21944445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 202

               
               
               Conread position:6-367
               
               
               Cow position:chr5:27403551-27403176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:263
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):122, 59

               
               
               Conread position:6-373
               
               
               Cow position:chr5:32141008-32140649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:251
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):122, 40

               
               
               Conread position:6-373
               
               
               Cow position:chr5:54405205-54404831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 75

               
               
               Conread position:6-398
               
               
               Cow position:chr5:39094242-39094642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 160

               
               
               Conread position:6-406
               
               
               Cow position:chr5:47704446-47704026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:6-418
               
               
               Cow position:chr5:21524854-21525272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 14

               
               
               Conread position:6-436
               
               
               Cow position:chr5:57935424-57934978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 69

               
               
               Conread position:6-440
               
               
               Cow position:chr5:29903833-29903389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 138

               
               
               Conread position:6-445
               
               
               Cow position:chr5:47317279-47316835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 108

               
               
               Conread position:6-446
               
               
               Cow position:chr5:68718579-68719007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):122, 65

               
               
               Conread position:6-447
               
               
               Cow position:chr5:47889026-47888591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 300

               
               
               Conread position:6-450
               
               
               Cow position:chr5:28224144-28224596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 115

               
               
               Conread position:6-452
               
               
               Cow position:chr5:72564448-72564910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 43

               
               
               Conread position:6-458
               
               
               Cow position:chr5:39258243-39258656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:316
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):366, 34

               
               
               Conread position:6-458
               
               
               Cow position:chr5:55068410-55068860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:308
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):107, 84

               
               
               Conread position:6-459
               
               
               Cow position:chr5:42845911-42845438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 115

               
               
               Conread position:6-460
               
               
               Cow position:chr5:21828545-21829021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 230

               
               
               Conread position:6-460
               
               
               Cow position:chr5:46510179-46509710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 222

               
               
               Conread position:6-466
               
               
               Cow position:chr5:45226140-45225654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 148

               
               
               Conread position:6-466
               
               
               Cow position:chr5:60210450-60209981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:312
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):121, 90

               
               
               Conread position:6-469
               
               
               Cow position:chr5:35207950-35208424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 74

               
               
               Conread position:6-475
               
               
               Cow position:chr5:28946364-28945891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:315
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):122, 40

               
               
               Conread position:9-290
               
               
               Cow position:chr5:52040618-52040342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):182, 60

               
               
               Conread position:9-343
               
               
               Cow position:chr5:23140886-23140552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):81, 176

               
               
               Conread position:9-368
               
               
               Cow position:chr5:54714050-54713677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 186

               
               
               Conread position:9-404
               
               
               Cow position:chr5:16508788-16509204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 104

               
               
               Conread position:9-457
               
               
               Cow position:chr5:55756749-55756264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 53

               
               
               Conread position:9-459
               
               
               Cow position:chr5:65752551-65753012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 90

               
               
               Conread position:9-460
               
               
               Cow position:chr5:54311015-54311490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 140

               
               
               Conread position:9-466
               
               
               Cow position:chr5:44797023-44796569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 59

               
               
               Conread position:9-471
               
               
               Cow position:chr5:60715663-60715203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 43

               
               
               Conread position:10-432
               
               
               Cow position:chr5:26133381-26132972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 215

               
               
               Conread position:10-453
               
               
               Cow position:chr5:29827746-29828193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 170

               
               
               Conread position:13-445
               
               
               Cow position:chr5:65887318-65886872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 100

               
               
               Conread position:13-459
               
               
               Cow position:chr5:35145046-35145481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 180

               
               
               Conread position:13-460
               
               
               Cow position:chr5:21040277-21039829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 56

               
               
               Conread position:13-460
               
               
               Cow position:chr5:37645761-37646235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 202

               
               
               Conread position:13-460
               
               
               Cow position:chr5:65776696-65776228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 42

               
               
               Conread position:14-290
               
               
               Cow position:chr5:47313170-47313449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):113, 163

               
               
               Conread position:14-453
               
               
               Cow position:chr5:6504169-6503734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:308
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):114, 23

               
               
               Conread position:16-291
               
               
               Cow position:chr5:60519874-60520135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):112, 54

               
               
               Conread position:16-343
               
               
               Cow position:chr5:59443553-59443219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 106

               
               
               Conread position:17-339
               
               
               Cow position:chr5:72149951-72150275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):93, 58

               
               
               Conread position:17-371
               
               
               Cow position:chr5:44583415-44583074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 20

               
               
               Conread position:17-466
               
               
               Cow position:chr5:44848311-44847861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:318
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):110, 59

               
               
               Conread position:18-339
               
               
               Cow position:chr5:43474556-43474870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 12

               
               
               Conread position:23-286
               
               
               Cow position:chr5:63917701-63917441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):17, 12

               
               
               Conread position:25-459
               
               
               Cow position:chr5:4710433-4709999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):296, 50

               
               
               Conread position:26-446
               
               
               Cow position:chr5:56467413-56467831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:294
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):102, 77

               
               
               Conread position:27-290
               
               
               Cow position:chr5:31469873-31469609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):203, 103

               
               
               Conread position:27-460
               
               
               Cow position:chr5:35826303-35826755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 40

               
               
               Conread position:30-460
               
               
               Cow position:chr5:9090307-9089874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 29

               
               
               Conread position:31-339
               
               
               Cow position:chr5:50950267-50950579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):97, 196

               
               
               Conread position:31-449
               
               
               Cow position:chr5:50533667-50533243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 28

               
               
               Conread position:31-452
               
               
               Cow position:chr5:24348830-24349254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 22

               
               
               Conread position:32-466
               
               
               Cow position:chr5:21617170-21617621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 197

               
               
               Conread position:36-466
               
               
               Cow position:chr5:26990111-26990546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 163

               
               
               Conread position:37-288
               
               
               Cow position:chr5:29680798-29681052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):90, 128

               
               
               Conread position:38-370
               
               
               Cow position:chr5:57327509-57327850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):31, 44

               
               
               Conread position:39-489
               
               
               Cow position:chr5:34183935-34184406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:303
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 285

               
               
               Conread position:40-367
               
               
               Cow position:chr5:40889560-40889244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):88, 35

               
               
               Conread position:40-457
               
               
               Cow position:chr5:42063926-42064356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 67

               
               
               Conread position:41-448
               
               
               Cow position:chr5:27419997-27419587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:280
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):78, 62

               
               
               Conread position:42-458
               
               
               Cow position:chr5:74858293-74858727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):20, 189

               
               
               Conread position:48-290
               
               
               Cow position:chr5:4507230-4506981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:48-453
               
               
               Cow position:chr5:63987716-63987298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 65

               
               
               Conread position:48-472
               
               
               Cow position:chr5:17999765-17999330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:49-450
               
               
               Cow position:chr5:32394330-32394743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):44, 54

               
               
               Conread position:55-288
               
               
               Cow position:chr5:37366628-37366872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):46, 182

               
               
               Conread position:55-408
               
               
               Cow position:chr5:62870297-62869940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:254
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):133, 71

               
               
               Conread position:59-373
               
               
               Cow position:chr5:58229445-58229755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):49, 124

               
               
               Conread position:61-228
               
               
               Cow position:chr5:25935698-25935864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):130, 42

               
               
               Conread position:61-305
               
               
               Cow position:chr5:61656350-61656592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):66, 126

               
               
               Conread position:62-229
               
               
               Cow position:chr5:46754472-46754644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:66-412
               
               
               Cow position:chr5:4617124-4617472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:251
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):20, 35

               
               
               Conread position:66-446
               
               
               Cow position:chr5:59326079-59325702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:273
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):62, 47

               
               
               Conread position:68-428
               
               
               Cow position:chr5:65588463-65588821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):146, 45

               
               
               Conread position:69-290
               
               
               Cow position:chr5:63388547-63388767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):59, 6

               
               
               Conread position:70-467
               
               
               Cow position:chr5:64176369-64175963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 161

               
               
               Conread position:72-356
               
               
               Cow position:chr5:32956335-32956052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):220, 54

               
               
               Conread position:75-456
               
               
               Cow position:chr5:38832875-38833270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):34, 157

               
               
               Conread position:77-273
               
               
               Cow position:chr5:24642962-24642770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):50, 128

               
               
               Conread position:77-281
               
               
               Cow position:chr5:12563246-12563042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:77-289
               
               
               Cow position:chr5:37714145-37713925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 102

               
               
               Conread position:77-401
               
               
               Cow position:chr5:73079972-73080300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):51, 68

               
               
               Conread position:77-430
               
               
               Cow position:chr5:42744557-42744904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):51, 38

               
               
               Conread position:77-443
               
               
               Cow position:chr5:37814383-37814763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):51, 127

               
               
               Conread position:77-452
               
               
               Cow position:chr5:28229917-28230311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):51, 133

               
               
               Conread position:77-452
               
               
               Cow position:chr5:54350601-54350215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 103

               
               
               Conread position:77-453
               
               
               Cow position:chr5:25035467-25035111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):51, 90

               
               
               Conread position:77-453
               
               
               Cow position:chr5:55967123-55966736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:260
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):50, 153

               
               
               Conread position:77-459
               
               
               Cow position:chr5:34300685-34301069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 86

               
               
               Conread position:77-459
               
               
               Cow position:chr5:69337592-69337973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):114, 26

               
               
               Conread position:77-466
               
               
               Cow position:chr5:37646792-37646382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 140

               
               
               Conread position:77-469
               
               
               Cow position:chr5:32975791-32975397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:78-333
               
               
               Cow position:chr5:56433562-56433826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):106, 46

               
               
               Conread position:78-358
               
               
               Cow position:chr5:30639089-30638819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):214, 46

               
               
               Conread position:78-373
               
               
               Cow position:chr5:2500420-2500120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):125, 41

               
               
               Conread position:78-419
               
               
               Cow position:chr5:43738187-43737850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:245
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):292, 23

               
               
               Conread position:78-443
               
               
               Cow position:chr5:75437136-75436751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):54, 336

               
               
               Conread position:78-444
               
               
               Cow position:chr5:1247036-1247401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:263
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):10, 156

               
               
               Conread position:78-448
               
               
               Cow position:chr5:13536918-13537275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:78-450
               
               
               Cow position:chr5:51999980-52000362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 35

               
               
               Conread position:78-453
               
               
               Cow position:chr5:54086301-54086685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:269
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):126, 35

               
               
               Conread position:78-454
               
               
               Cow position:chr5:46323051-46322655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 142

               
               
               Conread position:78-459
               
               
               Cow position:chr5:57074574-57074177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 158

               
               
               Conread position:78-460
               
               
               Cow position:chr5:458233-458642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:285
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):45, 113

               
               
               Conread position:78-460
               
               
               Cow position:chr5:11668417-11668029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:78-460
               
               
               Cow position:chr5:20779620-20779243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):7, 37

               
               
               Conread position:78-460
               
               
               Cow position:chr5:26477232-26476862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):54, 64

               
               
               Conread position:78-460
               
               
               Cow position:chr5:58144845-58144461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 288

               
               
               Conread position:78-466
               
               
               Cow position:chr5:30844873-30845272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:79-256
               
               
               Cow position:chr5:61455516-61455698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:80-457
               
               
               Cow position:chr5:4032226-4031835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 79

               
               
               Conread position:80-460
               
               
               Cow position:chr5:20127817-20128208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 64

               
               
               Conread position:81-353
               
               
               Cow position:chr5:54064543-54064815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):46, 106

               
               
               Conread position:82-306
               
               
               Cow position:chr5:45036785-45037013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):19, 35

               
               
               Conread position:82-445
               
               
               Cow position:chr5:17063329-17062942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:265
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):46, 148

               
               
               Conread position:82-466
               
               
               Cow position:chr5:29353364-29352966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:277
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):45, 31

               
               
               Conread position:82-467
               
               
               Cow position:chr5:30253510-30253902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 31

               
               
               Conread position:83-445
               
               
               Cow position:chr5:43992091-43992463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 59

               
               
               Conread position:83-469
               
               
               Cow position:chr5:24996458-24996058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:272
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):108, 44

               
               
               Conread position:84-450
               
               
               Cow position:chr5:72007086-72006721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:251
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:84-453
               
               
               Cow position:chr5:6683581-6683219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):44, 75

               
               
               Conread position:84-460
               
               
               Cow position:chr5:36854979-36855360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:272
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:84-466
               
               
               Cow position:chr5:41164855-41165248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 109

               
               
               Conread position:85-436
               
               
               Cow position:chr5:21964059-21964399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):24, 42

               
               
               Conread position:86-446
               
               
               Cow position:chr5:7723441-7723805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 27

               
               
               Conread position:86-460
               
               
               Cow position:chr5:12709655-12710020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:86-466
               
               
               Cow position:chr5:16938239-16937868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:272
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):42, 79

               
               
               Conread position:86-471
               
               
               Cow position:chr5:11229905-11229509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):46, 143

               
               
               Conread position:88-368
               
               
               Cow position:chr5:46122578-46122299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):45, 26

               
               
               Conread position:89-448
               
               
               Cow position:chr5:71454824-71454470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):22, 138

               
               
               Conread position:90-358
               
               
               Cow position:chr5:51490981-51490720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):38, 50

               
               
               Conread position:90-373
               
               
               Cow position:chr5:56820487-56820202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):42, 55

               
               
               Conread position:90-455
               
               
               Cow position:chr5:8821239-8820862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 10

               
               
               Conread position:91-306
               
               
               Cow position:chr5:18090501-18090716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:94-270
               
               
               Cow position:chr5:66281016-66280838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 133

               
               
               Conread position:96-452
               
               
               Cow position:chr5:16025682-16025323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 134

               
               
               Conread position:99-442
               
               
               Cow position:chr5:62142452-62142812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 160

               
               
               Conread position:100-306
               
               
               Cow position:chr5:57271483-57271273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 84

               
               
               Conread position:101-467
               
               
               Cow position:chr5:26262890-26262519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 50

               
               
               Conread position:102-440
               
               
               Cow position:chr5:8024407-8024066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):69, 77

               
               
               Conread position:103-356
               
               
               Cow position:chr5:7140319-7140064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):29, 87

               
               
               Conread position:103-367
               
               
               Cow position:chr5:35235923-35235656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):25, 146

               
               
               Conread position:104-288
               
               
               Cow position:chr5:71158477-71158290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):23, 111

               
               
               Conread position:104-460
               
               
               Cow position:chr5:35969329-35969686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 130

               
               
               Conread position:105-489
               
               
               Cow position:chr5:56518421-56518046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:251
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):22, 16

               
               
               Conread position:106-356
               
               
               Cow position:chr5:47547928-47547680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):194, 183

               
               
               Conread position:106-457
               
               
               Cow position:chr5:6572540-6572894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):22, 124

               
               
               Conread position:107-372
               
               
               Cow position:chr5:40039981-40039710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):20, 120

               
               
               Conread position:107-445
               
               
               Cow position:chr5:57736904-57737238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):21, 73

               
               
               Conread position:107-450
               
               
               Cow position:chr5:18898773-18899117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):21, 84

               
               
               Conread position:108-400
               
               
               Cow position:chr5:29212739-29213032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):20, 70

               
               
               Conread position:109-466
               
               
               Cow position:chr5:4280255-4280610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):19, 76

               
               
               Conread position:116-374
               
               
               Cow position:chr5:3668697-3668958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):15, 23

               
               
               Conread position:118-353
               
               
               Cow position:chr5:8994765-8994526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 107

               
               
               Conread position:123-386
               
               
               Cow position:chr5:17644851-17644583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):7, 237

               
               
               Conread position:125-450
               
               
               Cow position:chr5:3639674-3639353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):16, 76

               
               
               Conread position:126-466
               
               
               Cow position:chr5:34561818-34562178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):65, 103

               
               
               Conread position:130-287
               
               
               Cow position:chr5:50870355-50870516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:130-290
               
               
               Cow position:chr5:74019957-74019798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:130-373
               
               
               Cow position:chr5:1678213-1678451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):100, 43

               
               
               Conread position:130-445
               
               
               Cow position:chr5:50215745-50215425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 14

               
               
               Conread position:130-452
               
               
               Cow position:chr5:22643404-22643086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):79, 96

               
               
               Conread position:130-453
               
               
               Cow position:chr5:4220794-4221124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):60, 99

               
               
               Conread position:130-459
               
               
               Cow position:chr5:69461148-69461490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):166, 95

               
               
               Conread position:130-470
               
               
               Cow position:chr5:64758950-64758602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:253
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):158, 31

               
               
               Conread position:132-353
               
               
               Cow position:chr5:62995661-62995886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:132-431
               
               
               Cow position:chr5:48010031-48009734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):150, 52

               
               
               Conread position:132-453
               
               
               Cow position:chr5:69731333-69731647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):184, 47

               
               
               Conread position:132-456
               
               
               Cow position:chr5:46512951-46512619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):59, 110

               
               
               Conread position:132-460
               
               
               Cow position:chr5:23169003-23168672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):164, 44

               
               
               Conread position:132-460
               
               
               Cow position:chr5:61810608-61810925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):160, 59

               
               
               Conread position:133-452
               
               
               Cow position:chr5:37808848-37808517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):160, 53

               
               
               Conread position:134-469
               
               
               Cow position:chr5:47323268-47323625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):40, 79

               
               
               Conread position:138-452
               
               
               Cow position:chr5:41713131-41713444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):32, 39

               
               
               Conread position:138-469
               
               
               Cow position:chr5:44028480-44028144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):50, 88

               
               
               Conread position:141-440
               
               
               Cow position:chr5:6286602-6286299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):52, 87

               
               
               Conread position:141-469
               
               
               Cow position:chr5:51935007-51935352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:146-466
               
               
               Cow position:chr5:55955735-55956076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):45, 81

               
               
               Conread position:147-453
               
               
               Cow position:chr5:56317125-56317438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):44, 82

               
               
               Conread position:147-460
               
               
               Cow position:chr5:12866998-12866672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:149-459
               
               
               Cow position:chr5:30950087-30949760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 80

               
               
               Conread position:153-446
               
               
               Cow position:chr5:16214524-16214829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):139, 56

               
               
               Conread position:153-460
               
               
               Cow position:chr5:54060110-54060430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:155-448
               
               
               Cow position:chr5:23529432-23529141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):137, 11

               
               
               Conread position:156-358
               
               
               Cow position:chr5:71579013-71579220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:156-459
               
               
               Cow position:chr5:45397418-45397722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):140, 69

               
               
               Conread position:156-460
               
               
               Cow position:chr5:66581803-66582118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):83, 69

               
               
               Conread position:164-469
               
               
               Cow position:chr5:35247263-35246947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):14, 91

               
               
               Conread position:166-459
               
               
               Cow position:chr5:66972278-66972582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):47, 5

               
               
               Conread position:166-466
               
               
               Cow position:chr5:35459445-35459130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 60

               
               
               Conread position:171-466
               
               
               Cow position:chr5:70952021-70951728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):123, 54

               
               
               Conread position:177-373
               
               
               Cow position:chr5:11540187-11539991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:178-446
               
               
               Cow position:chr5:39874983-39875264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 119

               
               
               Conread position:179-453
               
               
               Cow position:chr5:54768047-54767762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):113, 156

               
               
               Conread position:181-466
               
               
               Cow position:chr5:73168133-73167848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):64, 19

               
               
               Conread position:182-473
               
               
               Cow position:chr5:14473551-14473236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:183-458
               
               
               Cow position:chr5:45273634-45273350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):116, 253

               
               
               Conread position:186-456
               
               
               Cow position:chr5:44446998-44446715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):110, 39

               
               
               Conread position:186-457
               
               
               Cow position:chr5:63427136-63426852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):125, 23

               
               
               Conread position:188-456
               
               
               Cow position:chr5:49474670-49474394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):91, 22

               
               
               Conread position:188-459
               
               
               Cow position:chr5:64027136-64026864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):108, 37

               
               
               Conread position:191-435
               
               
               Cow position:chr5:19335912-19335652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:191-466
               
               
               Cow position:chr5:18289004-18289284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):101, 157

               
               
               Conread position:212-445
               
               
               Cow position:chr5:53710798-53710550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:212-455
               
               
               Cow position:chr5:13717675-13717422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):25, 107

               
               
               Conread position:212-460
               
               
               Cow position:chr5:12557396-12557133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:213-458
               
               
               Cow position:chr5:58446700-58446960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):76, 12

               
               
               Conread position:216-458
               
               
               Cow position:chr5:41293980-41294233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 121

               
               
               Conread position:216-460
               
               
               Cow position:chr5:23678804-23678549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):18, 207

               
               
               Conread position:217-460
               
               
               Cow position:chr5:55019194-55019447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 80

               
               
               Conread position:225-459
               
               
               Cow position:chr5:50575693-50575936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):67, 82

               
               
               Conread position:236-460
               
               
               Cow position:chr5:19752224-19752458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):57, 48

               
               
               Conread position:241-466
               
               
               Cow position:chr5:30805092-30805324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):49, 75

               
               
               Conread position:245-458
               
               
               Cow position:chr5:63234898-63234676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:253-460
               
               
               Cow position:chr5:45420198-45419981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):39, 60

               
               
               Conread position:254-440
               
               
               Cow position:chr5:1461024-1461223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:257-467
               
               
               Cow position:chr5:63627585-63627374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 126

               
               
               Conread position:258-459
               
               
               Cow position:chr5:63059010-63059216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 108

               
               
               Conread position:260-452
               
               
               Cow position:chr5:29515553-29515358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):32, 54

               
               
               Conread position:270-460
               
               
               Cow position:chr5:58555093-58555293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:272-450
               
               
               Cow position:chr5:56153569-56153759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:278-466
               
               
               Cow position:chr5:55796004-55795804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:281-459
               
               
               Cow position:chr5:57101558-57101371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 13

               
               
               Conread position:314-470
               
               
               Cow position:chr5:17384150-17383993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):13, 149

               
               
               Conread position:324-466
               
               
               Cow position:chr5:5016439-5016587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:341-458
               
               
               Cow position:chr5:36822914-36823035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:1-456
               
               
               Cow position:chr6:15938166-15937691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 150

               
               
               Conread position:2-288
               
               
               Cow position:chr6:41824128-41823836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):112, 7

               
               
               Conread position:2-368
               
               
               Cow position:chr6:28148545-28148903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):49, 74

               
               
               Conread position:2-454
               
               
               Cow position:chr6:6060857-6060409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 11

               
               
               Conread position:3-453
               
               
               Cow position:chr6:60057964-60057496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 7

               
               
               Conread position:5-285
               
               
               Cow position:chr6:53345498-53345779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:5-287
               
               
               Cow position:chr6:21312053-21311764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-288
               
               
               Cow position:chr6:1784063-1783792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 48

               
               
               Conread position:5-290
               
               
               Cow position:chr6:2012721-2013006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 221

               
               
               Conread position:5-290
               
               
               Cow position:chr6:12927825-12928106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):123, 48

               
               
               Conread position:5-290
               
               
               Cow position:chr6:24327433-24327154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:5-290
               
               
               Cow position:chr6:61575306-61575596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 0

               
               
               Conread position:5-356
               
               
               Cow position:chr6:16410898-16411247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-358
               
               
               Cow position:chr6:13741400-13741759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 52

               
               
               Conread position:5-358
               
               
               Cow position:chr6:58075930-58076288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:253
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-367
               
               
               Cow position:chr6:6642886-6642541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):227, 119

               
               
               Conread position:5-367
               
               
               Cow position:chr6:18961818-18961448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:5-367
               
               
               Cow position:chr6:34075729-34076096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:258
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-370
               
               
               Cow position:chr6:50446057-50445696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 108

               
               
               Conread position:5-416
               
               
               Cow position:chr6:18049323-18048900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 110

               
               
               Conread position:5-436
               
               
               Cow position:chr6:31525754-31526190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-437
               
               
               Cow position:chr6:56842862-56843299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-440
               
               
               Cow position:chr6:4864836-4864399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 104

               
               
               Conread position:5-445
               
               
               Cow position:chr6:42565388-42565840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 192

               
               
               Conread position:5-445
               
               
               Cow position:chr6:47519753-47520206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:307
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 100

               
               
               Conread position:5-446
               
               
               Cow position:chr6:24004249-24004690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:294
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):81, 115

               
               
               Conread position:5-446
               
               
               Cow position:chr6:33302113-33302548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 39

               
               
               Conread position:5-448
               
               
               Cow position:chr6:9008905-9008456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 73

               
               
               Conread position:5-449
               
               
               Cow position:chr6:6343130-6343588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:5-456
               
               
               Cow position:chr6:26728824-26728368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 108

               
               
               Conread position:5-456
               
               
               Cow position:chr6:36470863-36470398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 65

               
               
               Conread position:5-457
               
               
               Cow position:chr6:10176596-10176137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 58

               
               
               Conread position:5-457
               
               
               Cow position:chr6:16706712-16707176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 65

               
               
               Conread position:5-457
               
               
               Cow position:chr6:47339654-47339191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 131

               
               
               Conread position:5-458
               
               
               Cow position:chr6:32867504-32867053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 220

               
               
               Conread position:5-458
               
               
               Cow position:chr6:35725794-35726263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:298
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):154, 97

               
               
               Conread position:5-459
               
               
               Cow position:chr6:8562418-8562886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 225

               
               
               Conread position:5-459
               
               
               Cow position:chr6:52478740-52478245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 123

               
               
               Conread position:5-460
               
               
               Cow position:chr6:6067986-6067533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:326
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):73, 63

               
               
               Conread position:5-460
               
               
               Cow position:chr6:10106298-10105811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:5-460
               
               
               Cow position:chr6:15305291-15305738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 46

               
               
               Conread position:5-460
               
               
               Cow position:chr6:28482717-28483184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 312

               
               
               Conread position:5-460
               
               
               Cow position:chr6:44078218-44078684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 116

               
               
               Conread position:5-460
               
               
               Cow position:chr6:64431644-64432106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 56

               
               
               Conread position:5-465
               
               
               Cow position:chr6:46465530-46465996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 201

               
               
               Conread position:5-466
               
               
               Cow position:chr6:35990526-35990060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 77

               
               
               Conread position:5-466
               
               
               Cow position:chr6:40031896-40032366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-466
               
               
               Cow position:chr6:46557760-46558233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 95

               
               
               Conread position:5-469
               
               
               Cow position:chr6:9751343-9750881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:316
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):80, 206

               
               
               Conread position:5-469
               
               
               Cow position:chr6:32287322-32287813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 109

               
               
               Conread position:5-469
               
               
               Cow position:chr6:61631911-61631431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-471
               
               
               Cow position:chr6:31635985-31635508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:319
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):74, 98

               
               
               Conread position:5-476
               
               
               Cow position:chr6:36652132-36652609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:321
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):286, 32

               
               
               Conread position:6-278
               
               
               Cow position:chr6:46666809-46667087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):63, 93

               
               
               Conread position:6-289
               
               
               Cow position:chr6:10332403-10332104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 218

               
               
               Conread position:6-290
               
               
               Cow position:chr6:66363541-66363256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 204

               
               
               Conread position:6-349
               
               
               Cow position:chr6:9733127-9732790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:248
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):122, 29

               
               
               Conread position:6-351
               
               
               Cow position:chr6:20231122-20230775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 199

               
               
               Conread position:6-352
               
               
               Cow position:chr6:606965-607313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 252

               
               
               Conread position:6-357
               
               
               Cow position:chr6:561323-561680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):121, 64

               
               
               Conread position:6-357
               
               
               Cow position:chr6:50120082-50119725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 62

               
               
               Conread position:6-366
               
               
               Cow position:chr6:5672933-5673313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):121, 27

               
               
               Conread position:6-369
               
               
               Cow position:chr6:3978958-3978593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:256
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):172, 60

               
               
               Conread position:6-372
               
               
               Cow position:chr6:48169648-48170010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 164

               
               
               Conread position:6-373
               
               
               Cow position:chr6:28476881-28477242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):56, 179

               
               
               Conread position:6-414
               
               
               Cow position:chr6:2607317-2607728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 59

               
               
               Conread position:6-415
               
               
               Cow position:chr6:16699965-16700384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 57

               
               
               Conread position:6-441
               
               
               Cow position:chr6:47305031-47305488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 90

               
               
               Conread position:6-446
               
               
               Cow position:chr6:11169411-11169856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 111

               
               
               Conread position:6-448
               
               
               Cow position:chr6:55474953-55475411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:302
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):228, 97

               
               
               Conread position:6-457
               
               
               Cow position:chr6:23695701-23696165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:6-458
               
               
               Cow position:chr6:51674613-51675074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 182

               
               
               Conread position:6-460
               
               
               Cow position:chr6:67214445-67214917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 109

               
               
               Conread position:6-466
               
               
               Cow position:chr6:67187400-67187860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:320
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):122, 38

               
               
               Conread position:6-469
               
               
               Cow position:chr6:18447806-18447341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 108

               
               
               Conread position:6-489
               
               
               Cow position:chr6:35103621-35103132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 62

               
               
               Conread position:8-290
               
               
               Cow position:chr6:40264488-40264213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):120, 26

               
               
               Conread position:9-303
               
               
               Cow position:chr6:43789515-43789220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):118, 59

               
               
               Conread position:9-432
               
               
               Cow position:chr6:1770489-1770059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 133

               
               
               Conread position:9-445
               
               
               Cow position:chr6:63047283-63047745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 18

               
               
               Conread position:9-451
               
               
               Cow position:chr6:14958637-14958181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 39

               
               
               Conread position:9-453
               
               
               Cow position:chr6:38771004-38771443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 36

               
               
               Conread position:9-466
               
               
               Cow position:chr6:21587715-21587255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 267

               
               
               Conread position:9-467
               
               
               Cow position:chr6:35842367-35842834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 90

               
               
               Conread position:9-475
               
               
               Cow position:chr6:12500563-12501033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 192

               
               
               Conread position:10-445
               
               
               Cow position:chr6:38218372-38218819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 10

               
               
               Conread position:11-354
               
               
               Cow position:chr6:62925284-62924944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:11-357
               
               
               Cow position:chr6:62479457-62479103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 102

               
               
               Conread position:13-459
               
               
               Cow position:chr6:66532092-66531655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 105

               
               
               Conread position:14-373
               
               
               Cow position:chr6:46292619-46292275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):41, 89

               
               
               Conread position:14-452
               
               
               Cow position:chr6:34196437-34195989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 165

               
               
               Conread position:15-421
               
               
               Cow position:chr6:54369184-54368775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 44

               
               
               Conread position:15-474
               
               
               Cow position:chr6:5095842-5095360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 171

               
               
               Conread position:16-354
               
               
               Cow position:chr6:642864-642513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 304

               
               
               Conread position:17-460
               
               
               Cow position:chr6:54867226-54867685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 49

               
               
               Conread position:17-479
               
               
               Cow position:chr6:57164141-57164612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:307
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):56, 112

               
               
               Conread position:20-453
               
               
               Cow position:chr6:10612580-10613004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:304
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):100, 30

               
               
               Conread position:21-372
               
               
               Cow position:chr6:44098806-44099159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 47

               
               
               Conread position:24-398
               
               
               Cow position:chr6:53178361-53178735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 100

               
               
               Conread position:24-459
               
               
               Cow position:chr6:21534780-21535208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 156

               
               
               Conread position:34-290
               
               
               Cow position:chr6:35471795-35471532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):98, 199

               
               
               Conread position:39-466
               
               
               Cow position:chr6:61515461-61515019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 74

               
               
               Conread position:41-316
               
               
               Cow position:chr6:54293849-54294124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):87, 139

               
               
               Conread position:46-458
               
               
               Cow position:chr6:8599746-8600164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):193, 269

               
               
               Conread position:46-460
               
               
               Cow position:chr6:3952268-3952688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 69

               
               
               Conread position:48-399
               
               
               Cow position:chr6:64449137-64449484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:249
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):66, 92

               
               
               Conread position:54-358
               
               
               Cow position:chr6:53710867-53711173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):22, 61

               
               
               Conread position:57-460
               
               
               Cow position:chr6:56849772-56850188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 124

               
               
               Conread position:57-469
               
               
               Cow position:chr6:15242590-15243013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 38

               
               
               Conread position:58-460
               
               
               Cow position:chr6:38853903-38853489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:285
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):69, 172

               
               
               Conread position:62-256
               
               
               Cow position:chr6:17068060-17067865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):66, 51

               
               
               Conread position:62-460
               
               
               Cow position:chr6:9736880-9736493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:291
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):66, 52

               
               
               Conread position:62-477
               
               
               Cow position:chr6:54991233-54990816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 52

               
               
               Conread position:63-459
               
               
               Cow position:chr6:41375513-41375938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:291
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:64-486
               
               
               Cow position:chr6:20098203-20097765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:263
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):64, 162

               
               
               Conread position:65-426
               
               
               Cow position:chr6:27110352-27110731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 62

               
               
               Conread position:69-290
               
               
               Cow position:chr6:39994695-39994474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):59, 161

               
               
               Conread position:70-290
               
               
               Cow position:chr6:54885146-54884923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:71-459
               
               
               Cow position:chr6:50983976-50984393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):51, 226

               
               
               Conread position:77-339
               
               
               Cow position:chr6:30826260-30825992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):55, 37

               
               
               Conread position:77-354
               
               
               Cow position:chr6:49685359-49685639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):51, 133

               
               
               Conread position:77-444
               
               
               Cow position:chr6:66874136-66874501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:269
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):51, 87

               
               
               Conread position:77-446
               
               
               Cow position:chr6:28977257-28976886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:274
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):38, 107

               
               
               Conread position:77-448
               
               
               Cow position:chr6:17090373-17090754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:267
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):114, 30

               
               
               Conread position:77-448
               
               
               Cow position:chr6:31564559-31564182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):45, 24

               
               
               Conread position:77-448
               
               
               Cow position:chr6:45065232-45064860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:265
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):50, 86

               
               
               Conread position:77-448
               
               
               Cow position:chr6:48573108-48572724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):101, 28

               
               
               Conread position:77-451
               
               
               Cow position:chr6:21869871-21869490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):56, 113

               
               
               Conread position:77-452
               
               
               Cow position:chr6:15301043-15300673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 107

               
               
               Conread position:77-452
               
               
               Cow position:chr6:68049210-68049577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:77-456
               
               
               Cow position:chr6:54490966-54490573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:271
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):51, 105

               
               
               Conread position:77-461
               
               
               Cow position:chr6:38440956-38441341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 133

               
               
               Conread position:77-466
               
               
               Cow position:chr6:24468618-24468220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:270
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):41, 89

               
               
               Conread position:77-466
               
               
               Cow position:chr6:37148971-37149365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 39

               
               
               Conread position:77-466
               
               
               Cow position:chr6:44194771-44194374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 102

               
               
               Conread position:78-437
               
               
               Cow position:chr6:60350524-60350147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):50, 152

               
               
               Conread position:78-446
               
               
               Cow position:chr6:46865824-46865438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:258
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):32, 247

               
               
               Conread position:78-460
               
               
               Cow position:chr6:67950734-67951117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 109

               
               
               Conread position:79-266
               
               
               Cow position:chr6:51398577-51398764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):48, 175

               
               
               Conread position:79-266
               
               
               Cow position:chr6:59302048-59301857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):48, 12

               
               
               Conread position:79-288
               
               
               Cow position:chr6:388947-389155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):49, 65

               
               
               Conread position:79-358
               
               
               Cow position:chr6:45160515-45160240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 36

               
               
               Conread position:80-356
               
               
               Cow position:chr6:25773604-25773329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):48, 105

               
               
               Conread position:80-371
               
               
               Cow position:chr6:5445406-5445694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):142, 46

               
               
               Conread position:80-379
               
               
               Cow position:chr6:8804750-8804445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):48, 35

               
               
               Conread position:80-442
               
               
               Cow position:chr6:49002947-49002589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:256
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:80-460
               
               
               Cow position:chr6:55282513-55282124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:268
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):5, 36

               
               
               Conread position:81-432
               
               
               Cow position:chr6:38614602-38614952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 104

               
               
               Conread position:81-452
               
               
               Cow position:chr6:38207717-38207330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:81-466
               
               
               Cow position:chr6:4383271-4383653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:275
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):47, 34

               
               
               Conread position:82-460
               
               
               Cow position:chr6:14949702-14949311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 185

               
               
               Conread position:83-450
               
               
               Cow position:chr6:35435783-35436153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):30, 127

               
               
               Conread position:83-453
               
               
               Cow position:chr6:10254022-10254386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):108, 15

               
               
               Conread position:83-460
               
               
               Cow position:chr6:37199769-37199370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:279
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):25, 327

               
               
               Conread position:84-420
               
               
               Cow position:chr6:23248182-23247838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):44, 154

               
               
               Conread position:84-451
               
               
               Cow position:chr6:7190338-7189961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 131

               
               
               Conread position:85-306
               
               
               Cow position:chr6:15923215-15922994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 29

               
               
               Conread position:85-437
               
               
               Cow position:chr6:16423481-16423846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):29, 9

               
               
               Conread position:85-456
               
               
               Cow position:chr6:21737102-21736729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:266
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):12, 84

               
               
               Conread position:86-348
               
               
               Cow position:chr6:48344111-48344381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):42, 157

               
               
               Conread position:86-445
               
               
               Cow position:chr6:60442202-60442560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 29

               
               
               Conread position:86-451
               
               
               Cow position:chr6:21110752-21111112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:256
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):28, 107

               
               
               Conread position:86-460
               
               
               Cow position:chr6:5609657-5609279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:261
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):42, 138

               
               
               Conread position:87-266
               
               
               Cow position:chr6:42931327-42931142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:88-287
               
               
               Cow position:chr6:61130697-61130493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:88-306
               
               
               Cow position:chr6:30786363-30786149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 92

               
               
               Conread position:88-473
               
               
               Cow position:chr6:17997530-17997138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 190

               
               
               Conread position:89-405
               
               
               Cow position:chr6:65702615-65702300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 101

               
               
               Conread position:91-343
               
               
               Cow position:chr6:24515405-24515155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 147

               
               
               Conread position:91-469
               
               
               Cow position:chr6:57405336-57404962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):131, 85

               
               
               Conread position:92-308
               
               
               Cow position:chr6:53139140-53138915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:92-458
               
               
               Cow position:chr6:23532452-23532820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:256
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:94-458
               
               
               Cow position:chr6:5114257-5113888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 148

               
               
               Conread position:96-379
               
               
               Cow position:chr6:61137158-61137452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):17, 152

               
               
               Conread position:96-460
               
               
               Cow position:chr6:54864873-54864492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:271
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):32, 17

               
               
               Conread position:96-491
               
               
               Cow position:chr6:7989620-7989221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:285
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):95, 35

               
               
               Conread position:97-341
               
               
               Cow position:chr6:58732520-58732262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 102

               
               
               Conread position:97-477
               
               
               Cow position:chr6:38641292-38641676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 85

               
               
               Conread position:98-460
               
               
               Cow position:chr6:20157120-20157503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 17

               
               
               Conread position:100-373
               
               
               Cow position:chr6:48425524-48425251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 79

               
               
               Conread position:100-453
               
               
               Cow position:chr6:66131105-66131465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:256
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):32, 72

               
               
               Conread position:100-459
               
               
               Cow position:chr6:6400745-6401117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):28, 99

               
               
               Conread position:101-457
               
               
               Cow position:chr6:10400097-10399750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):27, 86

               
               
               Conread position:102-451
               
               
               Cow position:chr6:59069829-59069459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):26, 128

               
               
               Conread position:104-290
               
               
               Cow position:chr6:33276840-33277030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 53

               
               
               Conread position:104-442
               
               
               Cow position:chr6:8788236-8787887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 94

               
               
               Conread position:104-459
               
               
               Cow position:chr6:63299222-63298865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):127, 22

               
               
               Conread position:105-351
               
               
               Cow position:chr6:415897-416157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):23, 12

               
               
               Conread position:107-356
               
               
               Cow position:chr6:53731325-53731580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:107-452
               
               
               Cow position:chr6:32269066-32268728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:109-463
               
               
               Cow position:chr6:29484897-29485255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):185, 114

               
               
               Conread position:110-453
               
               
               Cow position:chr6:21062076-21061724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):23, 60

               
               
               Conread position:118-432
               
               
               Cow position:chr6:52412669-52412998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):15, 323

               
               
               Conread position:118-448
               
               
               Cow position:chr6:53519808-53519467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:238
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):10, 96

               
               
               Conread position:118-458
               
               
               Cow position:chr6:47799113-47799459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):9, 46

               
               
               Conread position:118-459
               
               
               Cow position:chr6:50577335-50577686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 112

               
               
               Conread position:119-456
               
               
               Cow position:chr6:25008530-25008878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):14, 89

               
               
               Conread position:126-485
               
               
               Cow position:chr6:52901065-52901436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):166, 35

               
               
               Conread position:127-460
               
               
               Cow position:chr6:65259642-65259322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):167, 26

               
               
               Conread position:127-460
               
               
               Cow position:chr6:65264710-65264378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):165, 55

               
               
               Conread position:129-368
               
               
               Cow position:chr6:9838989-9839240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:129-460
               
               
               Cow position:chr6:47355651-47355992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):165, 96

               
               
               Conread position:130-353
               
               
               Cow position:chr6:49604511-49604729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):159, 17

               
               
               Conread position:130-407
               
               
               Cow position:chr6:17334229-17333938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:130-427
               
               
               Cow position:chr6:28318237-28318531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):162, 60

               
               
               Conread position:130-458
               
               
               Cow position:chr6:47574733-47575072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):116, 95

               
               
               Conread position:130-463
               
               
               Cow position:chr6:60819343-60819687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):164, 177

               
               
               Conread position:130-469
               
               
               Cow position:chr6:12668935-12669272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):96, 49

               
               
               Conread position:132-339
               
               
               Cow position:chr6:18968943-18968741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):87, 19

               
               
               Conread position:132-459
               
               
               Cow position:chr6:15447378-15447031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):59, 106

               
               
               Conread position:132-461
               
               
               Cow position:chr6:37783244-37783569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):23, 147

               
               
               Conread position:133-450
               
               
               Cow position:chr6:11246595-11246924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):159, 40

               
               
               Conread position:133-460
               
               
               Cow position:chr6:35993408-35993751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 152

               
               
               Conread position:135-440
               
               
               Cow position:chr6:47640604-47640285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 94

               
               
               Conread position:135-445
               
               
               Cow position:chr6:19012902-19013216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):56, 71

               
               
               Conread position:137-352
               
               
               Cow position:chr6:40834638-40834416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):52, 100

               
               
               Conread position:138-366
               
               
               Cow position:chr6:44984162-44984396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:141-373
               
               
               Cow position:chr6:59108781-59109018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 30

               
               
               Conread position:141-416
               
               
               Cow position:chr6:12543094-12542806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):151, 84

               
               
               Conread position:142-416
               
               
               Cow position:chr6:55763694-55763977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):90, 62

               
               
               Conread position:143-452
               
               
               Cow position:chr6:26450158-26450473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):48, 94

               
               
               Conread position:143-459
               
               
               Cow position:chr6:48112045-48112362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):88, 41

               
               
               Conread position:143-469
               
               
               Cow position:chr6:14914398-14914059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):70, 36

               
               
               Conread position:144-459
               
               
               Cow position:chr6:19264658-19264332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 41

               
               
               Conread position:146-458
               
               
               Cow position:chr6:60739859-60740180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 170

               
               
               Conread position:147-444
               
               
               Cow position:chr6:67323161-67323461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):223, 117

               
               
               Conread position:148-366
               
               
               Cow position:chr6:57298866-57299081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):81, 31

               
               
               Conread position:150-459
               
               
               Cow position:chr6:4692136-4691809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):41, 281

               
               
               Conread position:151-465
               
               
               Cow position:chr6:58370593-58370925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:153-457
               
               
               Cow position:chr6:9219124-9219431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):141, 81

               
               
               Conread position:156-468
               
               
               Cow position:chr6:16316160-16316492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):57, 41

               
               
               Conread position:158-466
               
               
               Cow position:chr6:60118001-60118321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):12, 276

               
               
               Conread position:159-460
               
               
               Cow position:chr6:19996477-19996782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 33

               
               
               Conread position:160-453
               
               
               Cow position:chr6:21234903-21235204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):114, 11

               
               
               Conread position:161-435
               
               
               Cow position:chr6:55209415-55209700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 16

               
               
               Conread position:163-460
               
               
               Cow position:chr6:43135083-43134771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 275

               
               
               Conread position:164-452
               
               
               Cow position:chr6:38609830-38610125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):127, 137

               
               
               Conread position:165-455
               
               
               Cow position:chr6:28156283-28156000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 26

               
               
               Conread position:170-354
               
               
               Cow position:chr6:19351286-19351101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):122, 55

               
               
               Conread position:171-459
               
               
               Cow position:chr6:17313603-17313900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):122, 64

               
               
               Conread position:171-460
               
               
               Cow position:chr6:53841630-53841338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):121, 62

               
               
               Conread position:172-455
               
               
               Cow position:chr6:48803767-48803476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):40, 54

               
               
               Conread position:177-446
               
               
               Cow position:chr6:62669745-62670019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:177-452
               
               
               Cow position:chr6:60667292-60667571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):17, 156

               
               
               Conread position:177-458
               
               
               Cow position:chr6:23402114-23401826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):116, 64

               
               
               Conread position:185-469
               
               
               Cow position:chr6:21514736-21514431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:186-431
               
               
               Cow position:chr6:12845263-12845514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):31, 23

               
               
               Conread position:186-457
               
               
               Cow position:chr6:10225755-10225490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):45, 52

               
               
               Conread position:194-443
               
               
               Cow position:chr6:6672992-6673258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):20, 117

               
               
               Conread position:194-460
               
               
               Cow position:chr6:61168667-61168923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):156, 39

               
               
               Conread position:196-456
               
               
               Cow position:chr6:59603313-59603044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):100, 29

               
               
               Conread position:212-446
               
               
               Cow position:chr6:1429549-1429793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 34

               
               
               Conread position:212-463
               
               
               Cow position:chr6:19292708-19292974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):80, 65

               
               
               Conread position:213-466
               
               
               Cow position:chr6:143457-143199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):80, 12

               
               
               Conread position:216-442
               
               
               Cow position:chr6:20196379-20196153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):159, 9

               
               
               Conread position:216-448
               
               
               Cow position:chr6:37462936-37463178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):76, 9

               
               
               Conread position:216-460
               
               
               Cow position:chr6:44867627-44867374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:218-457
               
               
               Cow position:chr6:13565000-13565253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):74, 7

               
               
               Conread position:220-466
               
               
               Cow position:chr6:67281812-67282070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):10, 72

               
               
               Conread position:223-459
               
               
               Cow position:chr6:2623702-2623941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):69, 97

               
               
               Conread position:225-460
               
               
               Cow position:chr6:33509712-33509954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):67, 106

               
               
               Conread position:225-467
               
               
               Cow position:chr6:16288130-16287883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):145, 68

               
               
               Conread position:236-451
               
               
               Cow position:chr6:28179014-28178796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):6, 85

               
               
               Conread position:238-460
               
               
               Cow position:chr6:10224141-10224359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):144, 16

               
               
               Conread position:238-460
               
               
               Cow position:chr6:61142629-61142397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):54, 208

               
               
               Conread position:238-466
               
               
               Cow position:chr6:37395473-37395224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:241-460
               
               
               Cow position:chr6:35896402-35896184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):67, 106

               
               
               Conread position:245-460
               
               
               Cow position:chr6:9302773-9302550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:245-460
               
               
               Cow position:chr6:18144135-18144365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 31

               
               
               Conread position:254-445
               
               
               Cow position:chr6:68652402-68652198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:254-456
               
               
               Cow position:chr6:16352396-16352190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):40, 59

               
               
               Conread position:254-467
               
               
               Cow position:chr6:33929599-33929372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:255-457
               
               
               Cow position:chr6:48468956-48469163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 38

               
               
               Conread position:259-453
               
               
               Cow position:chr6:7119664-7119458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:260-460
               
               
               Cow position:chr6:55535792-55535584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 152

               
               
               Conread position:261-459
               
               
               Cow position:chr6:19131387-19131597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:277-453
               
               
               Cow position:chr6:57287686-57287500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 58

               
               
               Conread position:296-451
               
               
               Cow position:chr6:47885026-47884871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):86, 19

               
               
               Conread position:2-424
               
               
               Cow position:chr7:2884045-2884471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 161

               
               
               Conread position:2-436
               
               
               Cow position:chr7:19267667-19267225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 11

               
               
               Conread position:3-460
               
               
               Cow position:chr7:40953162-40952695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 226

               
               
               Conread position:4-464
               
               
               Cow position:chr7:13593478-13593942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 190

               
               
               Conread position:5-230
               
               
               Cow position:chr7:21521798-21522012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):122, 67

               
               
               Conread position:5-290
               
               
               Cow position:chr7:32240338-32240618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:209
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):186, 108

               
               
               Conread position:5-290
               
               
               Cow position:chr7:53034608-53034331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 155

               
               
               Conread position:5-290
               
               
               Cow position:chr7:56887067-56886795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):188, 41

               
               
               Conread position:5-290
               
               
               Cow position:chr7:61551609-61551890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:5-300
               
               
               Cow position:chr7:14538535-14538235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:5-304
               
               
               Cow position:chr7:12994869-12995166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):186, 70

               
               
               Conread position:5-306
               
               
               Cow position:chr7:24778407-24778108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 96

               
               
               Conread position:5-308
               
               
               Cow position:chr7:23619381-23619075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 221

               
               
               Conread position:5-339
               
               
               Cow position:chr7:28089945-28090275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 108

               
               
               Conread position:5-341
               
               
               Cow position:chr7:32714270-32714615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:5-350
               
               
               Cow position:chr7:35652372-35652020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 63

               
               
               Conread position:5-353
               
               
               Cow position:chr7:20469193-20469535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):123, 11

               
               
               Conread position:5-354
               
               
               Cow position:chr7:42431529-42431885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 73

               
               
               Conread position:5-358
               
               
               Cow position:chr7:21572990-21573353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-358
               
               
               Cow position:chr7:54089906-54090269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 111

               
               
               Conread position:5-359
               
               
               Cow position:chr7:39401662-39402021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 80

               
               
               Conread position:5-367
               
               
               Cow position:chr7:28583951-28584316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 207

               
               
               Conread position:5-373
               
               
               Cow position:chr7:9074760-9075127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 184

               
               
               Conread position:5-402
               
               
               Cow position:chr7:45592744-45593151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 75

               
               
               Conread position:5-414
               
               
               Cow position:chr7:268700-269103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:290
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):50, 41

               
               
               Conread position:5-424
               
               
               Cow position:chr7:37142659-37142239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 31

               
               
               Conread position:5-436
               
               
               Cow position:chr7:10122415-10122838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:285
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):77, 90

               
               
               Conread position:5-437
               
               
               Cow position:chr7:4452306-4452751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 59

               
               
               Conread position:5-440
               
               
               Cow position:chr7:6057833-6058278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 227

               
               
               Conread position:5-442
               
               
               Cow position:chr7:39147501-39147954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 202

               
               
               Conread position:5-445
               
               
               Cow position:chr7:1261730-1262184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:298
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:5-445
               
               
               Cow position:chr7:60483719-60483273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:296
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):50, 203

               
               
               Conread position:5-445
               
               
               Cow position:chr7:61824149-61823695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 119

               
               
               Conread position:5-445
               
               
               Cow position:chr7:62602901-62603332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:296
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):237, 81

               
               
               Conread position:5-446
               
               
               Cow position:chr7:46857250-46856807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 77

               
               
               Conread position:5-449
               
               
               Cow position:chr7:26632106-26631652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 25

               
               
               Conread position:5-450
               
               
               Cow position:chr7:58170446-58170899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 8

               
               
               Conread position:5-452
               
               
               Cow position:chr7:66894836-66894377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 250

               
               
               Conread position:5-453
               
               
               Cow position:chr7:39929985-39930446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:312
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):79, 163

               
               
               Conread position:5-453
               
               
               Cow position:chr7:48667130-48667577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:302
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):53, 41

               
               
               Conread position:5-453
               
               
               Cow position:chr7:52718937-52718476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 228

               
               
               Conread position:5-455
               
               
               Cow position:chr7:49648067-49648521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 158

               
               
               Conread position:5-456
               
               
               Cow position:chr7:20534586-20535039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 109

               
               
               Conread position:5-457
               
               
               Cow position:chr7:19798228-19797762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 177

               
               
               Conread position:5-457
               
               
               Cow position:chr7:20176995-20176542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:5-458
               
               
               Cow position:chr7:28563676-28563222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 33

               
               
               Conread position:5-458
               
               
               Cow position:chr7:33697681-33698122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 55

               
               
               Conread position:5-459
               
               
               Cow position:chr7:14520333-14519872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 171

               
               
               Conread position:5-459
               
               
               Cow position:chr7:15569751-15570207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:5-459
               
               
               Cow position:chr7:17816463-17816918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 86

               
               
               Conread position:5-459
               
               
               Cow position:chr7:44454561-44454110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 94

               
               
               Conread position:5-460
               
               
               Cow position:chr7:10513008-10512542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 224

               
               
               Conread position:5-460
               
               
               Cow position:chr7:25512417-25511952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 187

               
               
               Conread position:5-460
               
               
               Cow position:chr7:26838358-26838821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 61

               
               
               Conread position:5-460
               
               
               Cow position:chr7:30276437-30276904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 241

               
               
               Conread position:5-460
               
               
               Cow position:chr7:32711276-32710815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 320

               
               
               Conread position:5-460
               
               
               Cow position:chr7:35275364-35274911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 63

               
               
               Conread position:5-460
               
               
               Cow position:chr7:36569567-36570033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:326
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):185, 74

               
               
               Conread position:5-460
               
               
               Cow position:chr7:57259326-57258851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 216

               
               
               Conread position:5-460
               
               
               Cow position:chr7:59688241-59688708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 114

               
               
               Conread position:5-461
               
               
               Cow position:chr7:17756749-17757206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-466
               
               
               Cow position:chr7:3336835-3336380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 72

               
               
               Conread position:5-466
               
               
               Cow position:chr7:4130088-4129606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 232

               
               
               Conread position:5-466
               
               
               Cow position:chr7:40709813-40710308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 143

               
               
               Conread position:5-466
               
               
               Cow position:chr7:51909836-51910299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 63

               
               
               Conread position:5-466
               
               
               Cow position:chr7:54712120-54712597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 100

               
               
               Conread position:5-469
               
               
               Cow position:chr7:18388692-18388220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 55

               
               
               Conread position:5-474
               
               
               Cow position:chr7:40189256-40189734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 32

               
               
               Conread position:5-476
               
               
               Cow position:chr7:2896465-2896948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 25

               
               
               Conread position:5-478
               
               
               Cow position:chr7:42245007-42244517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:340
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):63, 239

               
               
               Conread position:5-489
               
               
               Cow position:chr7:15566478-15566957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 94

               
               
               Conread position:6-230
               
               
               Cow position:chr7:34004073-34004297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):127, 107

               
               
               Conread position:6-230
               
               
               Cow position:chr7:59438179-59438402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):219, 72

               
               
               Conread position:6-274
               
               
               Cow position:chr7:29474398-29474669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):159, 107

               
               
               Conread position:6-287
               
               
               Cow position:chr7:10069997-10069726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):122, 44

               
               
               Conread position:6-289
               
               
               Cow position:chr7:32824547-32824265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:6-306
               
               
               Cow position:chr7:4418754-4418453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):119, 66

               
               
               Conread position:6-343
               
               
               Cow position:chr7:26888252-26887910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):122, 53

               
               
               Conread position:6-357
               
               
               Cow position:chr7:51071945-51072303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 24

               
               
               Conread position:6-367
               
               
               Cow position:chr7:32316605-32316964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 151

               
               
               Conread position:6-373
               
               
               Cow position:chr7:39164099-39164464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):122, 50

               
               
               Conread position:6-414
               
               
               Cow position:chr7:64229195-64228768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):75, 93

               
               
               Conread position:6-434
               
               
               Cow position:chr7:32283621-32284064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 57

               
               
               Conread position:6-437
               
               
               Cow position:chr7:39169607-39170056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 437

               
               
               Conread position:6-443
               
               
               Cow position:chr7:39149646-39150103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:304
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):122, 59

               
               
               Conread position:6-444
               
               
               Cow position:chr7:2172462-2172904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 186

               
               
               Conread position:6-445
               
               
               Cow position:chr7:23569035-23568581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 224

               
               
               Conread position:6-445
               
               
               Cow position:chr7:53381903-53382350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 54

               
               
               Conread position:6-446
               
               
               Cow position:chr7:37361589-37362032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 192

               
               
               Conread position:6-449
               
               
               Cow position:chr7:67819826-67820275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:309
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):77, 88

               
               
               Conread position:6-451
               
               
               Cow position:chr7:53988766-53989213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 108

               
               
               Conread position:6-453
               
               
               Cow position:chr7:39325451-39325889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 57

               
               
               Conread position:6-453
               
               
               Cow position:chr7:39518006-39518446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 108

               
               
               Conread position:6-455
               
               
               Cow position:chr7:43907917-43908373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):91, 48

               
               
               Conread position:6-459
               
               
               Cow position:chr7:39129876-39129438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:303
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):69, 59

               
               
               Conread position:6-459
               
               
               Cow position:chr7:58302240-58301770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 210

               
               
               Conread position:6-460
               
               
               Cow position:chr7:64269277-64268822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 62

               
               
               Conread position:6-465
               
               
               Cow position:chr7:36247816-36248272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):266, 111

               
               
               Conread position:6-466
               
               
               Cow position:chr7:31171242-31170778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 72

               
               
               Conread position:6-466
               
               
               Cow position:chr7:40321200-40321662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 62

               
               
               Conread position:6-466
               
               
               Cow position:chr7:47547100-47547586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 115

               
               
               Conread position:6-470
               
               
               Cow position:chr7:23646313-23646793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 37

               
               
               Conread position:6-476
               
               
               Cow position:chr7:52785089-52784616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 71

               
               
               Conread position:7-466
               
               
               Cow position:chr7:49106489-49106022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 13

               
               
               Conread position:9-339
               
               
               Cow position:chr7:3728802-3729129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):118, 55

               
               
               Conread position:9-457
               
               
               Cow position:chr7:41872377-41871938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 37

               
               
               Conread position:9-458
               
               
               Cow position:chr7:41328316-41327866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:316
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):88, 23

               
               
               Conread position:9-466
               
               
               Cow position:chr7:34553957-34554431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 142

               
               
               Conread position:10-290
               
               
               Cow position:chr7:32819521-32819805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 228

               
               
               Conread position:10-459
               
               
               Cow position:chr7:43109815-43109369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 23

               
               
               Conread position:10-459
               
               
               Cow position:chr7:56820865-56820416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 219

               
               
               Conread position:11-453
               
               
               Cow position:chr7:47513979-47513522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 102

               
               
               Conread position:11-460
               
               
               Cow position:chr7:63749771-63749304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 222

               
               
               Conread position:13-290
               
               
               Cow position:chr7:20415591-20415313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 100

               
               
               Conread position:13-457
               
               
               Cow position:chr7:46823392-46823837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 55

               
               
               Conread position:13-460
               
               
               Cow position:chr7:64364815-64364356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 53

               
               
               Conread position:13-476
               
               
               Cow position:chr7:19982122-19981656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 32

               
               
               Conread position:14-465
               
               
               Cow position:chr7:44596982-44596527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 13

               
               
               Conread position:16-444
               
               
               Cow position:chr7:25415114-25415548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 55

               
               
               Conread position:17-434
               
               
               Cow position:chr7:11870113-11869696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 96

               
               
               Conread position:17-465
               
               
               Cow position:chr7:29280301-29279844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:308
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):125, 52

               
               
               Conread position:19-459
               
               
               Cow position:chr7:25393010-25393468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 15

               
               
               Conread position:20-371
               
               
               Cow position:chr7:31204808-31204447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):108, 147

               
               
               Conread position:20-453
               
               
               Cow position:chr7:59844043-59843588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):20, 184

               
               
               Conread position:21-453
               
               
               Cow position:chr7:4892582-4893023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 198

               
               
               Conread position:23-450
               
               
               Cow position:chr7:14450078-14450485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:24-425
               
               
               Cow position:chr7:21649826-21650234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 58

               
               
               Conread position:24-437
               
               
               Cow position:chr7:48243402-48243820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 99

               
               
               Conread position:24-460
               
               
               Cow position:chr7:14536543-14536111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 14

               
               
               Conread position:25-459
               
               
               Cow position:chr7:40067374-40067829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 194

               
               
               Conread position:27-467
               
               
               Cow position:chr7:49750853-49751305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:305
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):106, 41

               
               
               Conread position:30-445
               
               
               Cow position:chr7:50773002-50772577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:278
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):98, 144

               
               
               Conread position:30-459
               
               
               Cow position:chr7:9136571-9137007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 38

               
               
               Conread position:31-469
               
               
               Cow position:chr7:21240379-21239948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 83

               
               
               Conread position:35-460
               
               
               Cow position:chr7:32914848-32915287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 33

               
               
               Conread position:37-443
               
               
               Cow position:chr7:47932060-47931643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 146

               
               
               Conread position:37-459
               
               
               Cow position:chr7:39444862-39444447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 59

               
               
               Conread position:49-449
               
               
               Cow position:chr7:65122090-65122491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 66

               
               
               Conread position:49-453
               
               
               Cow position:chr7:26911686-26911279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:50-460
               
               
               Cow position:chr7:12408495-12408070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 193

               
               
               Conread position:50-466
               
               
               Cow position:chr7:30932225-30931801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 39

               
               
               Conread position:52-484
               
               
               Cow position:chr7:10943801-10943366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:299
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):76, 61

               
               
               Conread position:54-266
               
               
               Cow position:chr7:32813501-32813289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):73, 63

               
               
               Conread position:57-444
               
               
               Cow position:chr7:24220428-24220822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 114

               
               
               Conread position:57-472
               
               
               Cow position:chr7:52776997-52776577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 57

               
               
               Conread position:58-459
               
               
               Cow position:chr7:48722148-48721737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 184

               
               
               Conread position:60-449
               
               
               Cow position:chr7:40894280-40894703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:60-460
               
               
               Cow position:chr7:34422501-34422100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:281
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:62-290
               
               
               Cow position:chr7:57610515-57610745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 164

               
               
               Conread position:63-373
               
               
               Cow position:chr7:65689768-65689457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):65, 141

               
               
               Conread position:63-456
               
               
               Cow position:chr7:11066236-11066645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 53

               
               
               Conread position:65-458
               
               
               Cow position:chr7:33385698-33386090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:274
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):63, 117

               
               
               Conread position:66-459
               
               
               Cow position:chr7:40008583-40008997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 121

               
               
               Conread position:66-460
               
               
               Cow position:chr7:28095651-28096044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 160

               
               
               Conread position:66-463
               
               
               Cow position:chr7:39415670-39416083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 164

               
               
               Conread position:67-449
               
               
               Cow position:chr7:58863113-58862725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:265
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):222, 50

               
               
               Conread position:67-459
               
               
               Cow position:chr7:36278061-36278466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:272
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):61, 169

               
               
               Conread position:68-419
               
               
               Cow position:chr7:25496511-25496853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):60, 9

               
               
               Conread position:70-283
               
               
               Cow position:chr7:3176179-3175968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):58, 87

               
               
               Conread position:71-356
               
               
               Cow position:chr7:44095169-44094876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:73-466
               
               
               Cow position:chr7:54513649-54513227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:281
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):55, 40

               
               
               Conread position:75-440
               
               
               Cow position:chr7:66748750-66748389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 98

               
               
               Conread position:77-274
               
               
               Cow position:chr7:29346160-29345960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:77-353
               
               
               Cow position:chr7:24718758-24718476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):57, 51

               
               
               Conread position:77-364
               
               
               Cow position:chr7:41445138-41445429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):56, 36

               
               
               Conread position:77-372
               
               
               Cow position:chr7:15608187-15608481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:77-452
               
               
               Cow position:chr7:40263877-40263497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):43, 155

               
               
               Conread position:77-456
               
               
               Cow position:chr7:23935892-23936277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:276
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):51, 34

               
               
               Conread position:77-459
               
               
               Cow position:chr7:25860412-25860036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:77-460
               
               
               Cow position:chr7:147187-147587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:274
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):32, 68

               
               
               Conread position:77-460
               
               
               Cow position:chr7:8776975-8777377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):51, 361

               
               
               Conread position:77-460
               
               
               Cow position:chr7:17713688-17713301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:270
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:77-460
               
               
               Cow position:chr7:33719829-33720205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 113

               
               
               Conread position:77-460
               
               
               Cow position:chr7:37455098-37455488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):37, 136

               
               
               Conread position:77-460
               
               
               Cow position:chr7:63022916-63023311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:270
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):51, 340

               
               
               Conread position:77-465
               
               
               Cow position:chr7:14459139-14458747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:252
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):50, 36

               
               
               Conread position:77-466
               
               
               Cow position:chr7:17967342-17966942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:276
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):51, 148

               
               
               Conread position:77-469
               
               
               Cow position:chr7:25263143-25263547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:272
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):40, 238

               
               
               Conread position:77-476
               
               
               Cow position:chr7:45748056-45747663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:277
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):215, 36

               
               
               Conread position:78-307
               
               
               Cow position:chr7:24213658-24213890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):49, 35

               
               
               Conread position:78-373
               
               
               Cow position:chr7:34223468-34223769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):92, 36

               
               
               Conread position:78-438
               
               
               Cow position:chr7:69066475-69066844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):29, 49

               
               
               Conread position:78-448
               
               
               Cow position:chr7:36830440-36830809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):50, 67

               
               
               Conread position:78-451
               
               
               Cow position:chr7:60153213-60153612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:78-460
               
               
               Cow position:chr7:31694839-31694466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):55, 21

               
               
               Conread position:78-476
               
               
               Cow position:chr7:44049587-44049184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):54, 36

               
               
               Conread position:78-483
               
               
               Cow position:chr7:37951958-37952372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:284
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):50, 13

               
               
               Conread position:79-434
               
               
               Cow position:chr7:53612924-53613277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):49, 157

               
               
               Conread position:80-431
               
               
               Cow position:chr7:50371877-50372234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:250
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):47, 8

               
               
               Conread position:82-358
               
               
               Cow position:chr7:12212825-12212539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:83-445
               
               
               Cow position:chr7:256026-255664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 31

               
               
               Conread position:83-460
               
               
               Cow position:chr7:38060651-38060256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:84-349
               
               
               Cow position:chr7:39529220-39528940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:84-373
               
               
               Cow position:chr7:1558519-1558809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):44, 142

               
               
               Conread position:84-450
               
               
               Cow position:chr7:51319583-51319969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:267
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):107, 33

               
               
               Conread position:84-459
               
               
               Cow position:chr7:27283462-27283845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 154

               
               
               Conread position:86-428
               
               
               Cow position:chr7:3283150-3283497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):42, 13

               
               
               Conread position:86-430
               
               
               Cow position:chr7:3311630-3311979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):42, 13

               
               
               Conread position:86-450
               
               
               Cow position:chr7:47697810-47698165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:86-453
               
               
               Cow position:chr7:600129-600489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 29

               
               
               Conread position:86-456
               
               
               Cow position:chr7:22793132-22793510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:270
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):42, 71

               
               
               Conread position:86-466
               
               
               Cow position:chr7:48406715-48406314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:87-287
               
               
               Cow position:chr7:20779937-20780139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):41, 30

               
               
               Conread position:87-370
               
               
               Cow position:chr7:19096244-19095955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 9

               
               
               Conread position:87-466
               
               
               Cow position:chr7:16022088-16022473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 95

               
               
               Conread position:88-289
               
               
               Cow position:chr7:57161936-57162140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:88-460
               
               
               Cow position:chr7:20537150-20537536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:88-460
               
               
               Cow position:chr7:42894238-42894619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 77

               
               
               Conread position:90-352
               
               
               Cow position:chr7:7142278-7142004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:90-473
               
               
               Cow position:chr7:19230712-19230331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:91-443
               
               
               Cow position:chr7:41315648-41315283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):37, 139

               
               
               Conread position:91-444
               
               
               Cow position:chr7:3026933-3026565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):41, 350

               
               
               Conread position:92-450
               
               
               Cow position:chr7:40303473-40303096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:92-460
               
               
               Cow position:chr7:63946780-63946416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):200, 32

               
               
               Conread position:93-248
               
               
               Cow position:chr7:27073087-27072931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):19, 133

               
               
               Conread position:93-446
               
               
               Cow position:chr7:25104157-25104527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):35, 20

               
               
               Conread position:96-444
               
               
               Cow position:chr7:33280194-33279843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:237
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):32, 111

               
               
               Conread position:96-459
               
               
               Cow position:chr7:26737544-26737177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):32, 134

               
               
               Conread position:96-460
               
               
               Cow position:chr7:44986453-44986823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 85

               
               
               Conread position:97-460
               
               
               Cow position:chr7:15855512-15855160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:97-464
               
               
               Cow position:chr7:38696644-38697019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 163

               
               
               Conread position:99-450
               
               
               Cow position:chr7:59075651-59076010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):85, 27

               
               
               Conread position:99-459
               
               
               Cow position:chr7:1761517-1761900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 53

               
               
               Conread position:100-356
               
               
               Cow position:chr7:61765113-61765376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):27, 98

               
               
               Conread position:100-373
               
               
               Cow position:chr7:41879703-41879414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 66

               
               
               Conread position:100-459
               
               
               Cow position:chr7:55694249-55693883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 109

               
               
               Conread position:101-408
               
               
               Cow position:chr7:25960272-25960584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 57

               
               
               Conread position:101-466
               
               
               Cow position:chr7:30156158-30155770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:257
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:104-445
               
               
               Cow position:chr7:4720431-4720076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):23, 52

               
               
               Conread position:107-352
               
               
               Cow position:chr7:12202110-12201872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):21, 50

               
               
               Conread position:107-458
               
               
               Cow position:chr7:34084444-34084092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 216

               
               
               Conread position:108-440
               
               
               Cow position:chr7:14174601-14174276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):32, 20

               
               
               Conread position:108-448
               
               
               Cow position:chr7:52536443-52536095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):24, 55

               
               
               Conread position:108-460
               
               
               Cow position:chr7:13963010-13963383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):20, 128

               
               
               Conread position:108-469
               
               
               Cow position:chr7:64135657-64135289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):20, 90

               
               
               Conread position:109-405
               
               
               Cow position:chr7:24932605-24932302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):19, 97

               
               
               Conread position:117-442
               
               
               Cow position:chr7:32079277-32079603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):175, 9

               
               
               Conread position:118-358
               
               
               Cow position:chr7:11715521-11715775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:118-457
               
               
               Cow position:chr7:67872999-67873360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:120-446
               
               
               Cow position:chr7:25195354-25195698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:130-373
               
               
               Cow position:chr7:32372689-32372936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):164, 94

               
               
               Conread position:130-460
               
               
               Cow position:chr7:31497548-31497880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):23, 73

               
               
               Conread position:130-464
               
               
               Cow position:chr7:39155403-39155753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 255

               
               
               Conread position:132-407
               
               
               Cow position:chr7:3773438-3773149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 95

               
               
               Conread position:132-474
               
               
               Cow position:chr7:61790523-61790171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:252
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):110, 46

               
               
               Conread position:133-460
               
               
               Cow position:chr7:41464296-41464638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):54, 148

               
               
               Conread position:135-444
               
               
               Cow position:chr7:8977987-8977670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):56, 94

               
               
               Conread position:136-457
               
               
               Cow position:chr7:29479358-29479695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 93

               
               
               Conread position:136-460
               
               
               Cow position:chr7:22651990-22651660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):73, 98

               
               
               Conread position:136-463
               
               
               Cow position:chr7:1375983-1376309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):156, 45

               
               
               Conread position:142-353
               
               
               Cow position:chr7:44942301-44942510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):150, 29

               
               
               Conread position:142-460
               
               
               Cow position:chr7:9800195-9800525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):9, 46

               
               
               Conread position:143-460
               
               
               Cow position:chr7:46051498-46051827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):156, 131

               
               
               Conread position:144-367
               
               
               Cow position:chr7:40335883-40336109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):149, 187

               
               
               Conread position:147-339
               
               
               Cow position:chr7:35742558-35742360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):145, 13

               
               
               Conread position:148-349
               
               
               Cow position:chr7:36714786-36714577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:149-470
               
               
               Cow position:chr7:30816437-30816112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 60

               
               
               Conread position:150-367
               
               
               Cow position:chr7:43055849-43055635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:155-460
               
               
               Cow position:chr7:2579389-2579067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):34, 175

               
               
               Conread position:164-356
               
               
               Cow position:chr7:5300527-5300333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):69, 84

               
               
               Conread position:164-445
               
               
               Cow position:chr7:34412410-34412123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:166-449
               
               
               Cow position:chr7:68315113-68315392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):124, 25

               
               
               Conread position:169-488
               
               
               Cow position:chr7:21122391-21122062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 303

               
               
               Conread position:177-433
               
               
               Cow position:chr7:23251684-23251423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:178-459
               
               
               Cow position:chr7:14524358-14524647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):115, 47

               
               
               Conread position:181-431
               
               
               Cow position:chr7:5212597-5212335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:181-459
               
               
               Cow position:chr7:58923277-58923567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:181-460
               
               
               Cow position:chr7:23636589-23636874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):113, 56

               
               
               Conread position:183-460
               
               
               Cow position:chr7:23090245-23089977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):156, 21

               
               
               Conread position:191-466
               
               
               Cow position:chr7:5199659-5199376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):105, 34

               
               
               Conread position:191-469
               
               
               Cow position:chr7:32945965-32946250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):105, 34

               
               
               Conread position:197-444
               
               
               Cow position:chr7:12358187-12357945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):178, 69

               
               
               Conread position:213-456
               
               
               Cow position:chr7:50566286-50566035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):81, 23

               
               
               Conread position:218-444
               
               
               Cow position:chr7:58351044-58350812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):19, 149

               
               
               Conread position:219-459
               
               
               Cow position:chr7:40308597-40308349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):138, 97

               
               
               Conread position:225-465
               
               
               Cow position:chr7:35300495-35300240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:226-445
               
               
               Cow position:chr7:53606397-53606178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):67, 88

               
               
               Conread position:226-490
               
               
               Cow position:chr7:2816197-2816464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):54, 95

               
               
               Conread position:227-466
               
               
               Cow position:chr7:30017590-30017341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):90, 27

               
               
               Conread position:227-483
               
               
               Cow position:chr7:24460885-24461146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):70, 50

               
               
               Conread position:229-469
               
               
               Cow position:chr7:68857661-68857409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:232-447
               
               
               Cow position:chr7:52758407-52758627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):27, 41

               
               
               Conread position:238-456
               
               
               Cow position:chr7:4811960-4812178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:238-459
               
               
               Cow position:chr7:32807401-32807617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):133, 16

               
               
               Conread position:241-457
               
               
               Cow position:chr7:168728-168500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):52, 213

               
               
               Conread position:241-459
               
               
               Cow position:chr7:54054528-54054754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):51, 181

               
               
               Conread position:246-439
               
               
               Cow position:chr7:63679023-63679222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 67

               
               
               Conread position:247-453
               
               
               Cow position:chr7:39823654-39823437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:254-467
               
               
               Cow position:chr7:38429758-38429535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 39

               
               
               Conread position:255-460
               
               
               Cow position:chr7:39838925-39838707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:258-460
               
               
               Cow position:chr7:11549622-11549834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:265-466
               
               
               Cow position:chr7:29505077-29505293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:268-466
               
               
               Cow position:chr7:8089128-8089343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:277-437
               
               
               Cow position:chr7:49630155-49630324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:296-440
               
               
               Cow position:chr7:37003815-37003958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 78

               
               
               Conread position:310-466
               
               
               Cow position:chr7:34464371-34464535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):60, 31

               
               
               Conread position:324-466
               
               
               Cow position:chr7:48563448-48563302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:324-467
               
               
               Cow position:chr7:39473077-39472935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 19

               
               
               Conread position:325-460
               
               
               Cow position:chr7:11015709-11015852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:2-341
               
               
               Cow position:chr8:46623857-46623531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):125, 7

               
               
               Conread position:2-460
               
               
               Cow position:chr8:39144441-39144875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:320
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):126, 7

               
               
               Conread position:2-466
               
               
               Cow position:chr8:6233227-6232746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 7

               
               
               Conread position:2-469
               
               
               Cow position:chr8:26625545-26626016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 7

               
               
               Conread position:2-474
               
               
               Cow position:chr8:1115121-1114660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 7

               
               
               Conread position:5-205
               
               
               Cow position:chr8:48955584-48955790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):72, 29

               
               
               Conread position:5-233
               
               
               Cow position:chr8:53320648-53320882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:5-285
               
               
               Cow position:chr8:33993841-33994115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 90

               
               
               Conread position:5-290
               
               
               Cow position:chr8:26600230-26600509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):73, 116

               
               
               Conread position:5-303
               
               
               Cow position:chr8:41943424-41943725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):119, 72

               
               
               Conread position:5-311
               
               
               Cow position:chr8:2166104-2165794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):119, 186

               
               
               Conread position:5-343
               
               
               Cow position:chr8:21827072-21826735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 61

               
               
               Conread position:5-358
               
               
               Cow position:chr8:1834583-1834950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 30

               
               
               Conread position:5-358
               
               
               Cow position:chr8:5485204-5484840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 26

               
               
               Conread position:5-358
               
               
               Cow position:chr8:53965075-53964717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):52, 93

               
               
               Conread position:5-366
               
               
               Cow position:chr8:31253481-31253850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:5-367
               
               
               Cow position:chr8:21960923-21961285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 121

               
               
               Conread position:5-370
               
               
               Cow position:chr8:9230208-9229843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):193, 48

               
               
               Conread position:5-373
               
               
               Cow position:chr8:45493554-45493923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 110

               
               
               Conread position:5-374
               
               
               Cow position:chr8:33693171-33693551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):83, 345

               
               
               Conread position:5-418
               
               
               Cow position:chr8:47342407-47342834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:5-435
               
               
               Cow position:chr8:10943062-10942632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 182

               
               
               Conread position:5-436
               
               
               Cow position:chr8:25871401-25871842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):105, 68

               
               
               Conread position:5-444
               
               
               Cow position:chr8:21221874-21222314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 130

               
               
               Conread position:5-444
               
               
               Cow position:chr8:24513464-24513024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 13

               
               
               Conread position:5-445
               
               
               Cow position:chr8:18017196-18017642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):128, 49

               
               
               Conread position:5-446
               
               
               Cow position:chr8:23179870-23179420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 54

               
               
               Conread position:5-446
               
               
               Cow position:chr8:24497925-24498367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 94

               
               
               Conread position:5-447
               
               
               Cow position:chr8:45245340-45244903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 31

               
               
               Conread position:5-448
               
               
               Cow position:chr8:43027980-43027530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:302
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):114, 31

               
               
               Conread position:5-452
               
               
               Cow position:chr8:39845306-39845746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 120

               
               
               Conread position:5-452
               
               
               Cow position:chr8:60454869-60455317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 30

               
               
               Conread position:5-453
               
               
               Cow position:chr8:13374216-13374677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 34

               
               
               Conread position:5-453
               
               
               Cow position:chr8:33431929-33432391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 182

               
               
               Conread position:5-453
               
               
               Cow position:chr8:43168352-43167896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 117

               
               
               Conread position:5-453
               
               
               Cow position:chr8:54051984-54052440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 39

               
               
               Conread position:5-456
               
               
               Cow position:chr8:15391479-15391024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 125

               
               
               Conread position:5-456
               
               
               Cow position:chr8:57218493-57218936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:302
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 33

               
               
               Conread position:5-457
               
               
               Cow position:chr8:4924236-4924702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 226

               
               
               Conread position:5-457
               
               
               Cow position:chr8:37881997-37882481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:328
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):55, 220

               
               
               Conread position:5-458
               
               
               Cow position:chr8:17047089-17046621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 241

               
               
               Conread position:5-458
               
               
               Cow position:chr8:60488955-60488495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 92

               
               
               Conread position:5-459
               
               
               Cow position:chr8:21077269-21077720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 110

               
               
               Conread position:5-459
               
               
               Cow position:chr8:24372037-24371579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 49

               
               
               Conread position:5-459
               
               
               Cow position:chr8:38893680-38894149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 223

               
               
               Conread position:5-459
               
               
               Cow position:chr8:43478725-43479173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:314
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):80, 35

               
               
               Conread position:5-459
               
               
               Cow position:chr8:53642759-53642296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 44

               
               
               Conread position:5-460
               
               
               Cow position:chr8:3891756-3891286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 196

               
               
               Conread position:5-460
               
               
               Cow position:chr8:20836800-20837258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 187

               
               
               Conread position:5-460
               
               
               Cow position:chr8:38596546-38596083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:323
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):72, 116

               
               
               Conread position:5-460
               
               
               Cow position:chr8:50708720-50709195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 226

               
               
               Conread position:5-461
               
               
               Cow position:chr8:18730109-18730587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 123

               
               
               Conread position:5-463
               
               
               Cow position:chr8:52926045-52925577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:304
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:5-464
               
               
               Cow position:chr8:10456128-10456611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:312
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):93, 192

               
               
               Conread position:5-466
               
               
               Cow position:chr8:1187610-1188063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:327
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:5-466
               
               
               Cow position:chr8:45878721-45879179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 15

               
               
               Conread position:5-466
               
               
               Cow position:chr8:45925303-45925761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 15

               
               
               Conread position:5-469
               
               
               Cow position:chr8:1999301-1999777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 22

               
               
               Conread position:5-469
               
               
               Cow position:chr8:15395181-15394713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 60

               
               
               Conread position:5-469
               
               
               Cow position:chr8:17199764-17199285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 121

               
               
               Conread position:6-224
               
               
               Cow position:chr8:59061346-59061564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):122, 14

               
               
               Conread position:6-230
               
               
               Cow position:chr8:22183245-22183475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:176
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:6-290
               
               
               Cow position:chr8:12303123-12303408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):121, 61

               
               
               Conread position:6-292
               
               
               Cow position:chr8:58229873-58230164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:6-307
               
               
               Cow position:chr8:49720809-49721115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 63

               
               
               Conread position:6-311
               
               
               Cow position:chr8:18648413-18648101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):184, 135

               
               
               Conread position:6-367
               
               
               Cow position:chr8:36398241-36397880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 34

               
               
               Conread position:6-373
               
               
               Cow position:chr8:1135841-1135477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):122, 40

               
               
               Conread position:6-398
               
               
               Cow position:chr8:43858377-43857986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 59

               
               
               Conread position:6-439
               
               
               Cow position:chr8:58417363-58417800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 110

               
               
               Conread position:6-444
               
               
               Cow position:chr8:24390520-24390073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 9

               
               
               Conread position:6-457
               
               
               Cow position:chr8:55716429-55716888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 242

               
               
               Conread position:6-459
               
               
               Cow position:chr8:1303584-1304043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 30

               
               
               Conread position:6-459
               
               
               Cow position:chr8:59766284-59766733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:301
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):122, 66

               
               
               Conread position:6-460
               
               
               Cow position:chr8:12795480-12795963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:323
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):53, 194

               
               
               Conread position:6-460
               
               
               Cow position:chr8:29764929-29765406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 199

               
               
               Conread position:6-460
               
               
               Cow position:chr8:53229710-53230161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:305
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):93, 30

               
               
               Conread position:6-466
               
               
               Cow position:chr8:7610252-7609792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 51

               
               
               Conread position:6-467
               
               
               Cow position:chr8:10399987-10400444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:307
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):72, 48

               
               
               Conread position:6-469
               
               
               Cow position:chr8:12058387-12058870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 109

               
               
               Conread position:7-466
               
               
               Cow position:chr8:61538166-61537699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:304
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):125, 61

               
               
               Conread position:8-290
               
               
               Cow position:chr8:45071050-45071330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 230

               
               
               Conread position:8-415
               
               
               Cow position:chr8:9917568-9917977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 105

               
               
               Conread position:9-367
               
               
               Cow position:chr8:51318648-51319010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:250
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):182, 250

               
               
               Conread position:9-444
               
               
               Cow position:chr8:3704298-3704745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 203

               
               
               Conread position:9-453
               
               
               Cow position:chr8:29026944-29026507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:319
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):70, 122

               
               
               Conread position:9-466
               
               
               Cow position:chr8:59250407-59250874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:307
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):119, 39

               
               
               Conread position:10-367
               
               
               Cow position:chr8:42607599-42607241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 44

               
               
               Conread position:13-285
               
               
               Cow position:chr8:54572327-54572598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 111

               
               
               Conread position:13-415
               
               
               Cow position:chr8:14947621-14947202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 104

               
               
               Conread position:13-446
               
               
               Cow position:chr8:538232-537788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 28

               
               
               Conread position:13-460
               
               
               Cow position:chr8:49687556-49687080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 470

               
               
               Conread position:13-465
               
               
               Cow position:chr8:48528272-48527814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:317
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):75, 56

               
               
               Conread position:14-289
               
               
               Cow position:chr8:25082949-25083234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):74, 198

               
               
               Conread position:14-445
               
               
               Cow position:chr8:35457160-35456718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:291
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):113, 31

               
               
               Conread position:14-450
               
               
               Cow position:chr8:25591500-25591943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 223

               
               
               Conread position:14-458
               
               
               Cow position:chr8:11606018-11606462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 63

               
               
               Conread position:15-354
               
               
               Cow position:chr8:20384472-20384805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:243
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):61, 104

               
               
               Conread position:15-453
               
               
               Cow position:chr8:11078551-11078991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 185

               
               
               Conread position:16-355
               
               
               Cow position:chr8:36648769-36648431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:238
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):111, 52

               
               
               Conread position:16-445
               
               
               Cow position:chr8:580391-579957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 84

               
               
               Conread position:18-453
               
               
               Cow position:chr8:4940624-4940187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 20

               
               
               Conread position:20-373
               
               
               Cow position:chr8:9517492-9517130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):108, 49

               
               
               Conread position:24-444
               
               
               Cow position:chr8:22273551-22273983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 92

               
               
               Conread position:24-473
               
               
               Cow position:chr8:25455098-25455559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 90

               
               
               Conread position:26-453
               
               
               Cow position:chr8:58519994-58520426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 89

               
               
               Conread position:28-466
               
               
               Cow position:chr8:36375816-36375372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 9

               
               
               Conread position:32-491
               
               
               Cow position:chr8:24471347-24471830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 181

               
               
               Conread position:36-452
               
               
               Cow position:chr8:32855099-32854691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):52, 34

               
               
               Conread position:37-418
               
               
               Cow position:chr8:38357145-38356760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:259
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):91, 150

               
               
               Conread position:37-454
               
               
               Cow position:chr8:45781962-45781538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 120

               
               
               Conread position:38-349
               
               
               Cow position:chr8:35966326-35966008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 47

               
               
               Conread position:38-459
               
               
               Cow position:chr8:10970533-10970972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:295
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):90, 201

               
               
               Conread position:39-441
               
               
               Cow position:chr8:19642177-19642588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:41-452
               
               
               Cow position:chr8:42146056-42145643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:292
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):137, 62

               
               
               Conread position:46-289
               
               
               Cow position:chr8:24201617-24201863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):82, 69

               
               
               Conread position:49-459
               
               
               Cow position:chr8:2774501-2774926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 187

               
               
               Conread position:49-472
               
               
               Cow position:chr8:2814336-2814777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:288
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):11, 180

               
               
               Conread position:50-460
               
               
               Cow position:chr8:37298197-37298616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 63

               
               
               Conread position:52-452
               
               
               Cow position:chr8:47665187-47664773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 176

               
               
               Conread position:54-458
               
               
               Cow position:chr8:47461586-47461998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 245

               
               
               Conread position:55-465
               
               
               Cow position:chr8:53383129-53383547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:293
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):73, 30

               
               
               Conread position:59-290
               
               
               Cow position:chr8:2881789-2882022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):69, 123

               
               
               Conread position:59-445
               
               
               Cow position:chr8:54031611-54032003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):69, 10

               
               
               Conread position:60-289
               
               
               Cow position:chr8:36059568-36059802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:61-290
               
               
               Cow position:chr8:48437672-48437449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):39, 174

               
               
               Conread position:62-280
               
               
               Cow position:chr8:29030367-29030151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 117

               
               
               Conread position:63-459
               
               
               Cow position:chr8:38780441-38780844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 89

               
               
               Conread position:63-460
               
               
               Cow position:chr8:36249687-36249280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:285
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):65, 33

               
               
               Conread position:64-354
               
               
               Cow position:chr8:39721397-39721694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):48, 148

               
               
               Conread position:66-456
               
               
               Cow position:chr8:48513273-48512878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 96

               
               
               Conread position:69-414
               
               
               Cow position:chr8:31775920-31776284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:69-466
               
               
               Cow position:chr8:20339022-20339423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 114

               
               
               Conread position:70-267
               
               
               Cow position:chr8:844198-844002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):58, 29

               
               
               Conread position:70-445
               
               
               Cow position:chr8:18207410-18207019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 170

               
               
               Conread position:72-367
               
               
               Cow position:chr8:16487563-16487264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):56, 43

               
               
               Conread position:76-469
               
               
               Cow position:chr8:11612291-11612698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 166

               
               
               Conread position:77-286
               
               
               Cow position:chr8:25249525-25249739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:77-289
               
               
               Cow position:chr8:44664839-44664620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):40, 168

               
               
               Conread position:77-290
               
               
               Cow position:chr8:10434553-10434766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):45, 90

               
               
               Conread position:77-290
               
               
               Cow position:chr8:39039774-39039988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):51, 28

               
               
               Conread position:77-353
               
               
               Cow position:chr8:16053286-16053559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):19, 49

               
               
               Conread position:77-354
               
               
               Cow position:chr8:24952079-24952373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):41, 139

               
               
               Conread position:77-367
               
               
               Cow position:chr8:48775560-48775857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):51, 255

               
               
               Conread position:77-442
               
               
               Cow position:chr8:39630515-39630893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 153

               
               
               Conread position:77-448
               
               
               Cow position:chr8:49600171-49599798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:253
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):167, 99

               
               
               Conread position:77-459
               
               
               Cow position:chr8:7149941-7149563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 89

               
               
               Conread position:77-460
               
               
               Cow position:chr8:18831484-18831883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:280
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):31, 47

               
               
               Conread position:77-460
               
               
               Cow position:chr8:20108038-20107652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:271
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):101, 49

               
               
               Conread position:77-465
               
               
               Cow position:chr8:6074052-6073672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):50, 78

               
               
               Conread position:77-466
               
               
               Cow position:chr8:18081280-18081678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 170

               
               
               Conread position:77-466
               
               
               Cow position:chr8:47136266-47135870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 152

               
               
               Conread position:77-484
               
               
               Cow position:chr8:9131182-9130765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):55, 115

               
               
               Conread position:78-290
               
               
               Cow position:chr8:36858354-36858147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):36, 83

               
               
               Conread position:78-445
               
               
               Cow position:chr8:25349454-25349836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:248
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):50, 152

               
               
               Conread position:78-445
               
               
               Cow position:chr8:37571962-37571580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:268
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):11, 64

               
               
               Conread position:78-447
               
               
               Cow position:chr8:8010646-8011029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):9, 163

               
               
               Conread position:78-452
               
               
               Cow position:chr8:45830633-45831010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 37

               
               
               Conread position:78-453
               
               
               Cow position:chr8:45127951-45127571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:266
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):113, 37

               
               
               Conread position:78-457
               
               
               Cow position:chr8:42762682-42762295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 104

               
               
               Conread position:78-458
               
               
               Cow position:chr8:42794564-42794185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 46

               
               
               Conread position:79-367
               
               
               Cow position:chr8:20212760-20212463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):49, 71

               
               
               Conread position:79-448
               
               
               Cow position:chr8:37122718-37123092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):49, 91

               
               
               Conread position:79-466
               
               
               Cow position:chr8:43113069-43112701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:266
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):221, 36

               
               
               Conread position:79-468
               
               
               Cow position:chr8:38681626-38682027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:277
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:80-304
               
               
               Cow position:chr8:45664522-45664747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):48, 105

               
               
               Conread position:82-445
               
               
               Cow position:chr8:44437517-44437891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:268
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):37, 111

               
               
               Conread position:82-446
               
               
               Cow position:chr8:8987187-8986823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):79, 42

               
               
               Conread position:82-458
               
               
               Cow position:chr8:6724591-6724209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):31, 133

               
               
               Conread position:83-367
               
               
               Cow position:chr8:40743600-40743317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):31, 122

               
               
               Conread position:83-424
               
               
               Cow position:chr8:22755775-22756124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:243
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):206, 34

               
               
               Conread position:83-460
               
               
               Cow position:chr8:34477865-34478236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):30, 148

               
               
               Conread position:83-466
               
               
               Cow position:chr8:20080315-20079938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):45, 59

               
               
               Conread position:83-472
               
               
               Cow position:chr8:8324110-8323719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 106

               
               
               Conread position:84-368
               
               
               Cow position:chr8:53485458-53485738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 149

               
               
               Conread position:84-436
               
               
               Cow position:chr8:10263411-10263050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 46

               
               
               Conread position:86-444
               
               
               Cow position:chr8:8668444-8668064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:255
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):42, 83

               
               
               Conread position:86-464
               
               
               Cow position:chr8:21212572-21212934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:257
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):295, 31

               
               
               Conread position:87-467
               
               
               Cow position:chr8:1023715-1024105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 26

               
               
               Conread position:88-356
               
               
               Cow position:chr8:28412856-28412586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):39, 92

               
               
               Conread position:91-460
               
               
               Cow position:chr8:20158001-20157621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:272
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):37, 16

               
               
               Conread position:92-419
               
               
               Cow position:chr8:225605-225283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):36, 111

               
               
               Conread position:92-445
               
               
               Cow position:chr8:2897861-2897491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):35, 145

               
               
               Conread position:93-453
               
               
               Cow position:chr8:1169507-1169154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:250
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):39, 20

               
               
               Conread position:94-463
               
               
               Cow position:chr8:60463278-60463651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):34, 134

               
               
               Conread position:95-446
               
               
               Cow position:chr8:29625201-29624844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:245
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):22, 142

               
               
               Conread position:96-352
               
               
               Cow position:chr8:1596408-1596148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):31, 214

               
               
               Conread position:96-368
               
               
               Cow position:chr8:28509728-28509444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:96-452
               
               
               Cow position:chr8:23030200-23030550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:244
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):203, 67

               
               
               Conread position:98-353
               
               
               Cow position:chr8:32295973-32295704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:98-419
               
               
               Cow position:chr8:20683738-20684070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):30, 61

               
               
               Conread position:99-343
               
               
               Cow position:chr8:54305849-54306093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):24, 94

               
               
               Conread position:99-443
               
               
               Cow position:chr8:53558836-53558487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):29, 73

               
               
               Conread position:103-460
               
               
               Cow position:chr8:16031799-16031440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):194, 23

               
               
               Conread position:104-442
               
               
               Cow position:chr8:35990818-35991171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):24, 126

               
               
               Conread position:105-416
               
               
               Cow position:chr8:5225264-5224950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):28, 70

               
               
               Conread position:105-460
               
               
               Cow position:chr8:20926864-20926492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:257
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):23, 72

               
               
               Conread position:107-457
               
               
               Cow position:chr8:35504461-35504100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:258
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):21, 119

               
               
               Conread position:107-459
               
               
               Cow position:chr8:11278338-11277962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):84, 24

               
               
               Conread position:108-454
               
               
               Cow position:chr8:669790-669431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):20, 62

               
               
               Conread position:108-484
               
               
               Cow position:chr8:20102996-20102618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):24, 169

               
               
               Conread position:109-357
               
               
               Cow position:chr8:20111888-20112142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:115-356
               
               
               Cow position:chr8:1327217-1327457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):175, 108

               
               
               Conread position:118-355
               
               
               Cow position:chr8:37147905-37148148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:125-453
               
               
               Cow position:chr8:1011770-1012111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):63, 111

               
               
               Conread position:126-445
               
               
               Cow position:chr8:50311050-50310727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):166, 48

               
               
               Conread position:129-460
               
               
               Cow position:chr8:8097469-8097126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):100, 80

               
               
               Conread position:130-290
               
               
               Cow position:chr8:51493232-51493071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):83, 61

               
               
               Conread position:130-342
               
               
               Cow position:chr8:11217270-11217049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:130-379
               
               
               Cow position:chr8:59438485-59438230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):58, 107

               
               
               Conread position:130-436
               
               
               Cow position:chr8:21382896-21382576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):80, 97

               
               
               Conread position:130-446
               
               
               Cow position:chr8:28221769-28221442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):61, 109

               
               
               Conread position:130-457
               
               
               Cow position:chr8:32093681-32094009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):166, 50

               
               
               Conread position:130-460
               
               
               Cow position:chr8:24329048-24328723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):19, 44

               
               
               Conread position:130-460
               
               
               Cow position:chr8:45690102-45689763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):101, 33

               
               
               Conread position:130-460
               
               
               Cow position:chr8:57208681-57208334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):56, 133

               
               
               Conread position:130-483
               
               
               Cow position:chr8:6485137-6484773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):84, 318

               
               
               Conread position:132-286
               
               
               Cow position:chr8:4591272-4591119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:132-418
               
               
               Cow position:chr8:39181972-39181672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):59, 179

               
               
               Conread position:133-436
               
               
               Cow position:chr8:26304600-26304276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):61, 196

               
               
               Conread position:133-467
               
               
               Cow position:chr8:27138987-27138644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):80, 38

               
               
               Conread position:135-466
               
               
               Cow position:chr8:33125301-33125644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:237
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):39, 126

               
               
               Conread position:136-460
               
               
               Cow position:chr8:39174445-39174103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):54, 93

               
               
               Conread position:147-463
               
               
               Cow position:chr8:12213827-12214146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 80

               
               
               Conread position:147-466
               
               
               Cow position:chr8:19011974-19011650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):150, 26

               
               
               Conread position:149-460
               
               
               Cow position:chr8:43439424-43439750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):42, 80

               
               
               Conread position:150-416
               
               
               Cow position:chr8:3760348-3760071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:151-456
               
               
               Cow position:chr8:3922911-3922581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):56, 181

               
               
               Conread position:151-466
               
               
               Cow position:chr8:5893763-5894086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):145, 74

               
               
               Conread position:153-466
               
               
               Cow position:chr8:37347633-37347309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):87, 9

               
               
               Conread position:167-370
               
               
               Cow position:chr8:32332655-32332445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:177-463
               
               
               Cow position:chr8:27730888-27731181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):115, 60

               
               
               Conread position:179-465
               
               
               Cow position:chr8:53633383-53633081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):58, 159

               
               
               Conread position:181-355
               
               
               Cow position:chr8:11135408-11135236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:183-445
               
               
               Cow position:chr8:935559-935829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):136, 106

               
               
               Conread position:186-460
               
               
               Cow position:chr8:16060943-16061207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:186-460
               
               
               Cow position:chr8:26008735-26009024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):111, 86

               
               
               Conread position:186-466
               
               
               Cow position:chr8:23586101-23585813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 206

               
               
               Conread position:186-466
               
               
               Cow position:chr8:38711456-38711737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):114, 46

               
               
               Conread position:186-469
               
               
               Cow position:chr8:40280543-40280832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):27, 23

               
               
               Conread position:188-460
               
               
               Cow position:chr8:48955792-48956081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):16, 71

               
               
               Conread position:193-370
               
               
               Cow position:chr8:48422678-48422858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):99, 124

               
               
               Conread position:194-442
               
               
               Cow position:chr8:37292223-37291969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):167, 31

               
               
               Conread position:195-460
               
               
               Cow position:chr8:16413946-16413674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:197-460
               
               
               Cow position:chr8:25388008-25388278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):95, 28

               
               
               Conread position:212-446
               
               
               Cow position:chr8:37862459-37862696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):80, 96

               
               
               Conread position:212-453
               
               
               Cow position:chr8:6193850-6194109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:212-453
               
               
               Cow position:chr8:19698530-19698772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):81, 21

               
               
               Conread position:212-459
               
               
               Cow position:chr8:19475205-19474945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 24

               
               
               Conread position:212-465
               
               
               Cow position:chr8:28228128-28228389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 62

               
               
               Conread position:213-453
               
               
               Cow position:chr8:37334054-37334297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):80, 12

               
               
               Conread position:213-459
               
               
               Cow position:chr8:38851980-38852230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):97, 18

               
               
               Conread position:215-453
               
               
               Cow position:chr8:53360347-53360107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):85, 10

               
               
               Conread position:216-419
               
               
               Cow position:chr8:43227857-43228071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):76, 9

               
               
               Conread position:218-445
               
               
               Cow position:chr8:19204558-19204322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):74, 36

               
               
               Conread position:218-448
               
               
               Cow position:chr8:40143968-40143725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 7

               
               
               Conread position:218-459
               
               
               Cow position:chr8:6224548-6224300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):78, 7

               
               
               Conread position:224-453
               
               
               Cow position:chr8:13723301-13723538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):68, 203

               
               
               Conread position:225-453
               
               
               Cow position:chr8:61067185-61067417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):89, 69

               
               
               Conread position:230-481
               
               
               Cow position:chr8:17232465-17232201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):63, 109

               
               
               Conread position:238-458
               
               
               Cow position:chr8:40579506-40579278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):61, 221

               
               
               Conread position:238-466
               
               
               Cow position:chr8:9652582-9652817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:246-459
               
               
               Cow position:chr8:4524998-4525219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):46, 75

               
               
               Conread position:251-452
               
               
               Cow position:chr8:20657444-20657231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:253-455
               
               
               Cow position:chr8:10846165-10846373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 41

               
               
               Conread position:253-460
               
               
               Cow position:chr8:60485129-60485347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:253-461
               
               
               Cow position:chr8:49656505-49656289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:254-458
               
               
               Cow position:chr8:34042374-34042588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):39, 68

               
               
               Conread position:254-460
               
               
               Cow position:chr8:49659052-49659266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):38, 53

               
               
               Conread position:260-460
               
               
               Cow position:chr8:29958330-29958537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):32, 117

               
               
               Conread position:262-452
               
               
               Cow position:chr8:37709080-37709281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:278-453
               
               
               Cow position:chr8:50335577-50335393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):14, 157

               
               
               Conread position:279-456
               
               
               Cow position:chr8:19860712-19860534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 91

               
               
               Conread position:289-460
               
               
               Cow position:chr8:60478669-60478497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:296-460
               
               
               Cow position:chr8:31265937-31265771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:314-460
               
               
               Cow position:chr8:43104309-43104153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:324-458
               
               
               Cow position:chr8:18647363-18647226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 61

               
               
               Conread position:324-460
               
               
               Cow position:chr8:35497685-35497544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:324-466
               
               
               Cow position:chr8:19784857-19785008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:1-455
               
               
               Cow position:chr9:5434002-5433538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 114

               
               
               Conread position:2-437
               
               
               Cow position:chr9:47905911-47906355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 7

               
               
               Conread position:2-456
               
               
               Cow position:chr9:56031960-56032411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 11

               
               
               Conread position:2-463
               
               
               Cow position:chr9:44466980-44467444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 8

               
               
               Conread position:2-466
               
               
               Cow position:chr9:63784559-63785019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:322
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):126, 7

               
               
               Conread position:2-469
               
               
               Cow position:chr9:30402048-30402534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 7

               
               
               Conread position:5-230
               
               
               Cow position:chr9:34355566-34355788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):153, 49

               
               
               Conread position:5-286
               
               
               Cow position:chr9:2398265-2398540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 177

               
               
               Conread position:5-288
               
               
               Cow position:chr9:15982715-15983001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):108, 49

               
               
               Conread position:5-290
               
               
               Cow position:chr9:22361380-22361097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):57, 73

               
               
               Conread position:5-290
               
               
               Cow position:chr9:26577495-26577773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):123, 64

               
               
               Conread position:5-304
               
               
               Cow position:chr9:27697364-27697662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:5-311
               
               
               Cow position:chr9:42998095-42998410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 157

               
               
               Conread position:5-330
               
               
               Cow position:chr9:1984139-1984485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):66, 132

               
               
               Conread position:5-339
               
               
               Cow position:chr9:1997496-1997167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):269, 62

               
               
               Conread position:5-357
               
               
               Cow position:chr9:20942246-20942598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):41, 32

               
               
               Conread position:5-402
               
               
               Cow position:chr9:41789654-41789243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 141

               
               
               Conread position:5-409
               
               
               Cow position:chr9:35375788-35375378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 119

               
               
               Conread position:5-422
               
               
               Cow position:chr9:17929123-17928696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:298
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):108, 63

               
               
               Conread position:5-422
               
               
               Cow position:chr9:22114274-22114696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 15

               
               
               Conread position:5-437
               
               
               Cow position:chr9:3220486-3220060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:302
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):123, 102

               
               
               Conread position:5-443
               
               
               Cow position:chr9:9443225-9443683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 114

               
               
               Conread position:5-443
               
               
               Cow position:chr9:26404156-26403703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 308

               
               
               Conread position:5-444
               
               
               Cow position:chr9:18252563-18252995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 63

               
               
               Conread position:5-445
               
               
               Cow position:chr9:9461292-9461738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 33

               
               
               Conread position:5-445
               
               
               Cow position:chr9:34696929-34697383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 108

               
               
               Conread position:5-445
               
               
               Cow position:chr9:39681725-39681255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 145

               
               
               Conread position:5-445
               
               
               Cow position:chr9:55074768-55075212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 97

               
               
               Conread position:5-445
               
               
               Cow position:chr9:55322018-55321553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:320
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):73, 43

               
               
               Conread position:5-446
               
               
               Cow position:chr9:62657159-62656718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 167

               
               
               Conread position:5-452
               
               
               Cow position:chr9:6880135-6879688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 73

               
               
               Conread position:5-453
               
               
               Cow position:chr9:5594867-5594408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 273

               
               
               Conread position:5-453
               
               
               Cow position:chr9:9552452-9551997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 72

               
               
               Conread position:5-453
               
               
               Cow position:chr9:50080679-50081134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 291

               
               
               Conread position:5-454
               
               
               Cow position:chr9:5501214-5500757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 33

               
               
               Conread position:5-456
               
               
               Cow position:chr9:7634631-7634176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 45

               
               
               Conread position:5-456
               
               
               Cow position:chr9:61739280-61738827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 20

               
               
               Conread position:5-456
               
               
               Cow position:chr9:64050193-64050656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 86

               
               
               Conread position:5-457
               
               
               Cow position:chr9:42445606-42446078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 122

               
               
               Conread position:5-458
               
               
               Cow position:chr9:7410149-7409665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:5-458
               
               
               Cow position:chr9:62400322-62399865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-459
               
               
               Cow position:chr9:17410822-17411293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 118

               
               
               Conread position:5-459
               
               
               Cow position:chr9:26057085-26057529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 98

               
               
               Conread position:5-459
               
               
               Cow position:chr9:37017251-37016800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 289

               
               
               Conread position:5-459
               
               
               Cow position:chr9:55796117-55795659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:316
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):185, 17

               
               
               Conread position:5-460
               
               
               Cow position:chr9:3388058-3387607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 380

               
               
               Conread position:5-460
               
               
               Cow position:chr9:4645967-4646426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 60

               
               
               Conread position:5-460
               
               
               Cow position:chr9:16300201-16300671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 137

               
               
               Conread position:5-460
               
               
               Cow position:chr9:29006934-29006457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 167

               
               
               Conread position:5-460
               
               
               Cow position:chr9:31347320-31346851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-460
               
               
               Cow position:chr9:42498195-42497726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 34

               
               
               Conread position:5-474
               
               
               Cow position:chr9:54528882-54528400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 316

               
               
               Conread position:5-477
               
               
               Cow position:chr9:44914745-44915212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:336
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):122, 62

               
               
               Conread position:5-486
               
               
               Cow position:chr9:24997137-24997645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:341
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):65, 151

               
               
               Conread position:6-289
               
               
               Cow position:chr9:3594163-3594448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):109, 47

               
               
               Conread position:6-353
               
               
               Cow position:chr9:57950965-57951305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 29

               
               
               Conread position:6-356
               
               
               Cow position:chr9:20739069-20738709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:250
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):75, 193

               
               
               Conread position:6-356
               
               
               Cow position:chr9:26391130-26390782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):286, 111

               
               
               Conread position:6-373
               
               
               Cow position:chr9:1951904-1952274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 109

               
               
               Conread position:6-408
               
               
               Cow position:chr9:35904385-35904792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 186

               
               
               Conread position:6-414
               
               
               Cow position:chr9:648139-647724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:285
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):121, 15

               
               
               Conread position:6-437
               
               
               Cow position:chr9:25964458-25964908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 438

               
               
               Conread position:6-455
               
               
               Cow position:chr9:35167539-35167080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:6-456
               
               
               Cow position:chr9:22318704-22318257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 174

               
               
               Conread position:6-458
               
               
               Cow position:chr9:8534320-8534793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 88

               
               
               Conread position:6-458
               
               
               Cow position:chr9:11299335-11299777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 29

               
               
               Conread position:6-458
               
               
               Cow position:chr9:63746167-63745718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 62

               
               
               Conread position:6-459
               
               
               Cow position:chr9:17740579-17741038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 81

               
               
               Conread position:6-459
               
               
               Cow position:chr9:36445987-36445514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:6-460
               
               
               Cow position:chr9:21888535-21888071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 313

               
               
               Conread position:6-465
               
               
               Cow position:chr9:8998721-8998243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 174

               
               
               Conread position:6-466
               
               
               Cow position:chr9:22443248-22443733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 64

               
               
               Conread position:6-466
               
               
               Cow position:chr9:31078718-31079186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 31

               
               
               Conread position:6-476
               
               
               Cow position:chr9:28948219-28947745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 91

               
               
               Conread position:7-228
               
               
               Cow position:chr9:24904852-24904619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:9-367
               
               
               Cow position:chr9:54997663-54998027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):119, 11

               
               
               Conread position:9-437
               
               
               Cow position:chr9:5510087-5509650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 220

               
               
               Conread position:9-445
               
               
               Cow position:chr9:5763267-5763714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 237

               
               
               Conread position:9-447
               
               
               Cow position:chr9:34310397-34309943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 314

               
               
               Conread position:9-449
               
               
               Cow position:chr9:38961074-38961516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 174

               
               
               Conread position:9-452
               
               
               Cow position:chr9:33218590-33219042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 15

               
               
               Conread position:9-457
               
               
               Cow position:chr9:62442644-62442194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 106

               
               
               Conread position:9-487
               
               
               Cow position:chr9:10308646-10309125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 29

               
               
               Conread position:10-322
               
               
               Cow position:chr9:33682037-33681731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):180, 49

               
               
               Conread position:10-467
               
               
               Cow position:chr9:824317-823854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:303
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):122, 162

               
               
               Conread position:13-435
               
               
               Cow position:chr9:41680092-41679673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 55

               
               
               Conread position:13-460
               
               
               Cow position:chr9:1520370-1520838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 313

               
               
               Conread position:14-343
               
               
               Cow position:chr9:32812704-32812375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 100

               
               
               Conread position:14-453
               
               
               Cow position:chr9:23388321-23388767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 54

               
               
               Conread position:14-460
               
               
               Cow position:chr9:38793377-38792917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 226

               
               
               Conread position:16-229
               
               
               Cow position:chr9:32787748-32787966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):65, 101

               
               
               Conread position:17-280
               
               
               Cow position:chr9:3192323-3192591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:18-445
               
               
               Cow position:chr9:5218826-5219256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 97

               
               
               Conread position:18-459
               
               
               Cow position:chr9:13169321-13169764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:309
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:20-351
               
               
               Cow position:chr9:18002600-18002936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 48

               
               
               Conread position:20-445
               
               
               Cow position:chr9:43871324-43870891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 142

               
               
               Conread position:20-459
               
               
               Cow position:chr9:28726374-28726828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 108

               
               
               Conread position:21-460
               
               
               Cow position:chr9:22151741-22152184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 38

               
               
               Conread position:21-478
               
               
               Cow position:chr9:62357177-62357647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 173

               
               
               Conread position:24-373
               
               
               Cow position:chr9:38344243-38343883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 207

               
               
               Conread position:24-443
               
               
               Cow position:chr9:5226817-5227257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 89

               
               
               Conread position:24-445
               
               
               Cow position:chr9:19714418-19713996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 148

               
               
               Conread position:25-439
               
               
               Cow position:chr9:5319977-5319544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 201

               
               
               Conread position:26-460
               
               
               Cow position:chr9:4267647-4268085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:307
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):165, 76

               
               
               Conread position:27-290
               
               
               Cow position:chr9:5141418-5141161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):95, 61

               
               
               Conread position:27-457
               
               
               Cow position:chr9:26434719-26435156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:303
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):93, 156

               
               
               Conread position:28-466
               
               
               Cow position:chr9:9199441-9199886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 85

               
               
               Conread position:37-469
               
               
               Cow position:chr9:15805586-15806031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 203

               
               
               Conread position:39-459
               
               
               Cow position:chr9:32677015-32676587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 54

               
               
               Conread position:48-376
               
               
               Cow position:chr9:22227761-22228086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):62, 138

               
               
               Conread position:48-453
               
               
               Cow position:chr9:64155532-64155943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 182

               
               
               Conread position:49-466
               
               
               Cow position:chr9:5393373-5392963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 190

               
               
               Conread position:52-449
               
               
               Cow position:chr9:54681821-54681421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 53

               
               
               Conread position:54-456
               
               
               Cow position:chr9:57896809-57897207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:266
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):74, 33

               
               
               Conread position:54-470
               
               
               Cow position:chr9:50976928-50977362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 156

               
               
               Conread position:57-463
               
               
               Cow position:chr9:55256235-55256656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):70, 60

               
               
               Conread position:58-443
               
               
               Cow position:chr9:32371446-32371833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:63-460
               
               
               Cow position:chr9:18343032-18342634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:262
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):12, 153

               
               
               Conread position:64-440
               
               
               Cow position:chr9:45285223-45285614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):64, 146

               
               
               Conread position:66-469
               
               
               Cow position:chr9:10011108-10010707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:281
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):22, 35

               
               
               Conread position:69-290
               
               
               Cow position:chr9:45170866-45171085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):59, 103

               
               
               Conread position:69-460
               
               
               Cow position:chr9:8724104-8723695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):6, 194

               
               
               Conread position:72-445
               
               
               Cow position:chr9:22696516-22696139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:265
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):56, 43

               
               
               Conread position:74-446
               
               
               Cow position:chr9:50076363-50075979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:260
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):54, 39

               
               
               Conread position:75-368
               
               
               Cow position:chr9:35850195-35849905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):53, 38

               
               
               Conread position:75-465
               
               
               Cow position:chr9:41513916-41513528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 128

               
               
               Conread position:76-460
               
               
               Cow position:chr9:60110528-60110151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):22, 13

               
               
               Conread position:77-447
               
               
               Cow position:chr9:49764951-49764572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 148

               
               
               Conread position:77-453
               
               
               Cow position:chr9:33940902-33940512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 243

               
               
               Conread position:77-458
               
               
               Cow position:chr9:20579331-20579692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:265
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):239, 40

               
               
               Conread position:77-460
               
               
               Cow position:chr9:5327546-5327159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 47

               
               
               Conread position:77-469
               
               
               Cow position:chr9:26278882-26279277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:277
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):51, 25

               
               
               Conread position:78-339
               
               
               Cow position:chr9:35305823-35306088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):7, 107

               
               
               Conread position:78-350
               
               
               Cow position:chr9:30138419-30138153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):49, 35

               
               
               Conread position:78-356
               
               
               Cow position:chr9:29034742-29035023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):33, 106

               
               
               Conread position:78-373
               
               
               Cow position:chr9:35533658-35533957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:78-452
               
               
               Cow position:chr9:55084003-55084392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 158

               
               
               Conread position:78-458
               
               
               Cow position:chr9:32306946-32307328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 39

               
               
               Conread position:78-459
               
               
               Cow position:chr9:56453626-56453240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:260
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:78-460
               
               
               Cow position:chr9:58133730-58134103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:269
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:78-466
               
               
               Cow position:chr9:17871814-17872217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:78-469
               
               
               Cow position:chr9:15215387-15215795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 133

               
               
               Conread position:79-351
               
               
               Cow position:chr9:64516804-64517081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:79-359
               
               
               Cow position:chr9:36067198-36066915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):53, 34

               
               
               Conread position:79-445
               
               
               Cow position:chr9:44710114-44709745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 34

               
               
               Conread position:79-460
               
               
               Cow position:chr9:17310269-17310661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:80-368
               
               
               Cow position:chr9:5400008-5399737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):5, 38

               
               
               Conread position:80-453
               
               
               Cow position:chr9:20091330-20090954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):216, 104

               
               
               Conread position:80-466
               
               
               Cow position:chr9:5836456-5836035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:288
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):34, 151

               
               
               Conread position:81-453
               
               
               Cow position:chr9:34468302-34468670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):52, 58

               
               
               Conread position:84-457
               
               
               Cow position:chr9:3070135-3070506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 108

               
               
               Conread position:85-460
               
               
               Cow position:chr9:8288904-8288519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:85-466
               
               
               Cow position:chr9:13670924-13670526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 154

               
               
               Conread position:86-460
               
               
               Cow position:chr9:10144186-10144573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:263
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):42, 380

               
               
               Conread position:86-460
               
               
               Cow position:chr9:11319358-11319733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:265
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):89, 38

               
               
               Conread position:88-456
               
               
               Cow position:chr9:61846866-61847219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):40, 99

               
               
               Conread position:90-290
               
               
               Cow position:chr9:10877584-10877790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:90-469
               
               
               Cow position:chr9:41283310-41282907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 65

               
               
               Conread position:91-339
               
               
               Cow position:chr9:16182210-16182457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:91-373
               
               
               Cow position:chr9:6225166-6225459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:91-450
               
               
               Cow position:chr9:37069288-37069647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 204

               
               
               Conread position:91-452
               
               
               Cow position:chr9:5756722-5757080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:257
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):37, 151

               
               
               Conread position:91-457
               
               
               Cow position:chr9:1751616-1751241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:261
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):23, 136

               
               
               Conread position:92-452
               
               
               Cow position:chr9:55287611-55287980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 149

               
               
               Conread position:92-467
               
               
               Cow position:chr9:48118422-48118790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:250
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):5, 10

               
               
               Conread position:93-367
               
               
               Cow position:chr9:30749306-30749587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 248

               
               
               Conread position:96-367
               
               
               Cow position:chr9:4128507-4128779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):18, 144

               
               
               Conread position:96-460
               
               
               Cow position:chr9:64559610-64559981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:255
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):18, 116

               
               
               Conread position:97-458
               
               
               Cow position:chr9:34901842-34902197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:98-450
               
               
               Cow position:chr9:32732411-32732768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:256
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):16, 95

               
               
               Conread position:99-453
               
               
               Cow position:chr9:51620708-51620352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:100-446
               
               
               Cow position:chr9:47869278-47868931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:243
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):28, 13

               
               
               Conread position:100-457
               
               
               Cow position:chr9:55118350-55117992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 44

               
               
               Conread position:101-454
               
               
               Cow position:chr9:54716351-54716695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:247
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):220, 85

               
               
               Conread position:103-290
               
               
               Cow position:chr9:41653058-41652867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):24, 127

               
               
               Conread position:104-306
               
               
               Cow position:chr9:41995982-41995772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:104-446
               
               
               Cow position:chr9:9753128-9753475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):141, 77

               
               
               Conread position:104-457
               
               
               Cow position:chr9:33598249-33597890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 187

               
               
               Conread position:104-460
               
               
               Cow position:chr9:34287062-34286700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):24, 56

               
               
               Conread position:105-288
               
               
               Cow position:chr9:37141494-37141315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:105-466
               
               
               Cow position:chr9:9595686-9596060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):14, 123

               
               
               Conread position:106-450
               
               
               Cow position:chr9:64637811-64637463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):26, 121

               
               
               Conread position:107-407
               
               
               Cow position:chr9:63905339-63905653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):21, 221

               
               
               Conread position:110-459
               
               
               Cow position:chr9:38846087-38846430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):18, 88

               
               
               Conread position:116-444
               
               
               Cow position:chr9:35027917-35028248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 56

               
               
               Conread position:118-290
               
               
               Cow position:chr9:38875320-38875495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:118-453
               
               
               Cow position:chr9:55890063-55889723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):10, 141

               
               
               Conread position:118-453
               
               
               Cow position:chr9:58979655-58979316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):10, 112

               
               
               Conread position:126-453
               
               
               Cow position:chr9:52131263-52130923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):104, 35

               
               
               Conread position:126-469
               
               
               Cow position:chr9:33119637-33119996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):65, 103

               
               
               Conread position:129-446
               
               
               Cow position:chr9:15225048-15225381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):101, 68

               
               
               Conread position:130-356
               
               
               Cow position:chr9:40604191-40603958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):61, 191

               
               
               Conread position:130-426
               
               
               Cow position:chr9:49710085-49709782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):69, 60

               
               
               Conread position:130-457
               
               
               Cow position:chr9:1729435-1729770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):83, 61

               
               
               Conread position:130-458
               
               
               Cow position:chr9:18216859-18217196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):61, 107

               
               
               Conread position:130-460
               
               
               Cow position:chr9:50139522-50139184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):162, 49

               
               
               Conread position:130-460
               
               
               Cow position:chr9:61544890-61544562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):64, 88

               
               
               Conread position:130-464
               
               
               Cow position:chr9:388774-389119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):116, 59

               
               
               Conread position:130-466
               
               
               Cow position:chr9:64106147-64105793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):125, 20

               
               
               Conread position:131-461
               
               
               Cow position:chr9:6840251-6839892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:135-466
               
               
               Cow position:chr9:3186378-3186019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:136-460
               
               
               Cow position:chr9:11313271-11313613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):9, 35

               
               
               Conread position:140-436
               
               
               Cow position:chr9:6339033-6338719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 303

               
               
               Conread position:141-356
               
               
               Cow position:chr9:32711162-32710942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 178

               
               
               Conread position:141-453
               
               
               Cow position:chr9:62724776-62724439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:144-465
               
               
               Cow position:chr9:53762928-53762590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 85

               
               
               Conread position:145-354
               
               
               Cow position:chr9:58734601-58734383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:145-459
               
               
               Cow position:chr9:27279544-27279207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:148-460
               
               
               Cow position:chr9:1973165-1972849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):144, 166

               
               
               Conread position:148-466
               
               
               Cow position:chr9:61303224-61302893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):143, 12

               
               
               Conread position:150-461
               
               
               Cow position:chr9:28354739-28354417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):142, 75

               
               
               Conread position:150-463
               
               
               Cow position:chr9:30652489-30652811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):142, 13

               
               
               Conread position:151-357
               
               
               Cow position:chr9:1879596-1879392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):170, 137

               
               
               Conread position:151-466
               
               
               Cow position:chr9:17799850-17799525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 23

               
               
               Conread position:155-451
               
               
               Cow position:chr9:43444011-43443714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):137, 42

               
               
               Conread position:156-466
               
               
               Cow position:chr9:11123277-11123590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):135, 24

               
               
               Conread position:164-465
               
               
               Cow position:chr9:8920205-8919895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):125, 225

               
               
               Conread position:165-460
               
               
               Cow position:chr9:37678093-37677795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):79, 127

               
               
               Conread position:165-467
               
               
               Cow position:chr9:19493253-19493568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):26, 64

               
               
               Conread position:171-460
               
               
               Cow position:chr9:28391835-28392125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):198, 121

               
               
               Conread position:177-439
               
               
               Cow position:chr9:49417181-49416909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):115, 139

               
               
               Conread position:177-469
               
               
               Cow position:chr9:9815611-9815305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:178-460
               
               
               Cow position:chr9:30124113-30123830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):118, 47

               
               
               Conread position:181-459
               
               
               Cow position:chr9:41728445-41728163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):129, 10

               
               
               Conread position:181-487
               
               
               Cow position:chr9:19555564-19555248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 45

               
               
               Conread position:183-460
               
               
               Cow position:chr9:56065736-56065464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):187, 42

               
               
               Conread position:186-460
               
               
               Cow position:chr9:9654127-9654408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):106, 48

               
               
               Conread position:191-375
               
               
               Cow position:chr9:31270959-31270773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):101, 34

               
               
               Conread position:191-460
               
               
               Cow position:chr9:8901044-8901327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:191-466
               
               
               Cow position:chr9:11168910-11168626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):101, 125

               
               
               Conread position:194-458
               
               
               Cow position:chr9:40215420-40215149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):39, 123

               
               
               Conread position:197-457
               
               
               Cow position:chr9:17518315-17518585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:212-444
               
               
               Cow position:chr9:6851909-6852150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):85, 232

               
               
               Conread position:212-452
               
               
               Cow position:chr9:51720743-51720988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):80, 96

               
               
               Conread position:212-457
               
               
               Cow position:chr9:49292987-49293237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):153, 13

               
               
               Conread position:212-459
               
               
               Cow position:chr9:11303919-11304172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):19, 68

               
               
               Conread position:212-465
               
               
               Cow position:chr9:5456015-5456281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):24, 85

               
               
               Conread position:216-452
               
               
               Cow position:chr9:36843942-36843702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):149, 78

               
               
               Conread position:216-465
               
               
               Cow position:chr9:12910247-12910509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):80, 9

               
               
               Conread position:223-458
               
               
               Cow position:chr9:35105642-35105891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):69, 31

               
               
               Conread position:225-450
               
               
               Cow position:chr9:34284094-34283865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):99, 64

               
               
               Conread position:225-457
               
               
               Cow position:chr9:3774307-3774069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):67, 92

               
               
               Conread position:227-452
               
               
               Cow position:chr9:1867594-1867359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):66, 90

               
               
               Conread position:238-460
               
               
               Cow position:chr9:40005609-40005376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):56, 212

               
               
               Conread position:238-469
               
               
               Cow position:chr9:6596101-6596338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:244-459
               
               
               Cow position:chr9:29339197-29339412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):53, 33

               
               
               Conread position:244-466
               
               
               Cow position:chr9:4630232-4629999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:245-460
               
               
               Cow position:chr9:52513326-52513547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):74, 44

               
               
               Conread position:246-452
               
               
               Cow position:chr9:52839761-52839972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):54, 72

               
               
               Conread position:248-466
               
               
               Cow position:chr9:1877884-1878109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:253-459
               
               
               Cow position:chr9:9311979-9311760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:253-460
               
               
               Cow position:chr9:38645224-38645443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 91

               
               
               Conread position:255-474
               
               
               Cow position:chr9:38941315-38941547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:258-459
               
               
               Cow position:chr9:50310660-50310858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):112, 19

               
               
               Conread position:258-460
               
               
               Cow position:chr9:46664935-46664724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):98, 60

               
               
               Conread position:264-452
               
               
               Cow position:chr9:55532922-55532724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):29, 186

               
               
               Conread position:273-460
               
               
               Cow position:chr9:41781752-41781555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:277-457
               
               
               Cow position:chr9:23797331-23797139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:277-460
               
               
               Cow position:chr9:43342424-43342232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 58

               
               
               Conread position:296-460
               
               
               Cow position:chr9:34278982-34279157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:297-436
               
               
               Cow position:chr9:38289253-38289397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:308-442
               
               
               Cow position:chr9:26859409-26859274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:309-490
               
               
               Cow position:chr9:34888237-34888423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):10, 41

               
               
               Conread position:324-458
               
               
               Cow position:chr9:9243584-9243454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 34

               
               
               Conread position:2-357
               
               
               Cow position:chrX:14924687-14925044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 7

               
               
               Conread position:2-459
               
               
               Cow position:chrX:161115-161566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 7

               
               
               Conread position:2-466
               
               
               Cow position:chrX:31729145-31729605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 8

               
               
               Conread position:2-466
               
               
               Cow position:chrX:45430331-45429862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:312
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):82, 8

               
               
               Conread position:3-460
               
               
               Cow position:chrX:42247488-42247023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 6

               
               
               Conread position:4-351
               
               
               Cow position:chrX:41743601-41743952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 109

               
               
               Conread position:4-476
               
               
               Cow position:chrX:20801465-20801942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:315
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:5-229
               
               
               Cow position:chrX:35633064-35632838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):122, 70

               
               
               Conread position:5-230
               
               
               Cow position:chrX:7382013-7382238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 28

               
               
               Conread position:5-266
               
               
               Cow position:chrX:42855100-42855365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-287
               
               
               Cow position:chrX:47211161-47210874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):109, 278

               
               
               Conread position:5-289
               
               
               Cow position:chrX:35388218-35387929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 226

               
               
               Conread position:5-289
               
               
               Cow position:chrX:38967340-38967621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 49

               
               
               Conread position:5-290
               
               
               Cow position:chrX:35609675-35609963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:5-304
               
               
               Cow position:chrX:42587740-42587437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):123, 161

               
               
               Conread position:5-305
               
               
               Cow position:chrX:21665902-21665602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 48

               
               
               Conread position:5-339
               
               
               Cow position:chrX:38439163-38439507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 8

               
               
               Conread position:5-352
               
               
               Cow position:chrX:34754503-34754153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):122, 267

               
               
               Conread position:5-353
               
               
               Cow position:chrX:12115730-12116087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 72

               
               
               Conread position:5-354
               
               
               Cow position:chrX:35681024-35681383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 168

               
               
               Conread position:5-355
               
               
               Cow position:chrX:18244678-18245028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):122, 94

               
               
               Conread position:5-356
               
               
               Cow position:chrX:8899713-8900070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 299

               
               
               Conread position:5-356
               
               
               Cow position:chrX:15139859-15139504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):33, 237

               
               
               Conread position:5-359
               
               
               Cow position:chrX:32128305-32127947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):84, 122

               
               
               Conread position:5-365
               
               
               Cow position:chrX:42462059-42461692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 233

               
               
               Conread position:5-370
               
               
               Cow position:chrX:12249490-12249861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:263
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):83, 161

               
               
               Conread position:5-374
               
               
               Cow position:chrX:25232275-25232654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:249
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):65, 246

               
               
               Conread position:5-414
               
               
               Cow position:chrX:7508815-7509248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:290
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):70, 159

               
               
               Conread position:5-421
               
               
               Cow position:chrX:38936388-38936816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):69, 112

               
               
               Conread position:5-431
               
               
               Cow position:chrX:35223991-35224422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 119

               
               
               Conread position:5-437
               
               
               Cow position:chrX:36778094-36778530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 287

               
               
               Conread position:5-440
               
               
               Cow position:chrX:4996304-4996722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:282
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):287, 49

               
               
               Conread position:5-440
               
               
               Cow position:chrX:5638479-5638023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 55

               
               
               Conread position:5-442
               
               
               Cow position:chrX:10412297-10411847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 119

               
               
               Conread position:5-443
               
               
               Cow position:chrX:44054494-44054940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 41

               
               
               Conread position:5-444
               
               
               Cow position:chrX:41122761-41123198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 108

               
               
               Conread position:5-445
               
               
               Cow position:chrX:21592975-21593427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 62

               
               
               Conread position:5-445
               
               
               Cow position:chrX:45967851-45968288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 183

               
               
               Conread position:5-446
               
               
               Cow position:chrX:25337866-25338328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 45

               
               
               Conread position:5-446
               
               
               Cow position:chrX:34238409-34238862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 111

               
               
               Conread position:5-449
               
               
               Cow position:chrX:7571595-7572052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 186

               
               
               Conread position:5-450
               
               
               Cow position:chrX:47054827-47054380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:309
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):114, 63

               
               
               Conread position:5-451
               
               
               Cow position:chrX:13648095-13647637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 167

               
               
               Conread position:5-452
               
               
               Cow position:chrX:4044169-4043720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 124

               
               
               Conread position:5-453
               
               
               Cow position:chrX:31443131-31442680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 30

               
               
               Conread position:5-456
               
               
               Cow position:chrX:14974039-14973595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 31

               
               
               Conread position:5-456
               
               
               Cow position:chrX:15007462-15006997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:5-456
               
               
               Cow position:chrX:42994303-42994740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 151

               
               
               Conread position:5-457
               
               
               Cow position:chrX:5872002-5872469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 65

               
               
               Conread position:5-458
               
               
               Cow position:chrX:18695232-18694779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 199

               
               
               Conread position:5-459
               
               
               Cow position:chrX:878680-878226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 64

               
               
               Conread position:5-459
               
               
               Cow position:chrX:9252485-9252010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 71

               
               
               Conread position:5-459
               
               
               Cow position:chrX:33855551-33855066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:326
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):72, 28

               
               
               Conread position:5-460
               
               
               Cow position:chrX:3654297-3654762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:313
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):128, 55

               
               
               Conread position:5-460
               
               
               Cow position:chrX:7277617-7278066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:323
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):42, 65

               
               
               Conread position:5-460
               
               
               Cow position:chrX:7718545-7718987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 54

               
               
               Conread position:5-460
               
               
               Cow position:chrX:15545586-15546040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 119

               
               
               Conread position:5-460
               
               
               Cow position:chrX:27516222-27516675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 70

               
               
               Conread position:5-460
               
               
               Cow position:chrX:31436169-31436629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 177

               
               
               Conread position:5-460
               
               
               Cow position:chrX:34441758-34441299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-460
               
               
               Cow position:chrX:34532220-34532674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 94

               
               
               Conread position:5-460
               
               
               Cow position:chrX:35268579-35269016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):305, 123

               
               
               Conread position:5-460
               
               
               Cow position:chrX:38094836-38094364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 108

               
               
               Conread position:5-460
               
               
               Cow position:chrX:38963800-38964263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 66

               
               
               Conread position:5-460
               
               
               Cow position:chrX:40557987-40557525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 167

               
               
               Conread position:5-460
               
               
               Cow position:chrX:42171607-42171139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:5-461
               
               
               Cow position:chrX:34564989-34565438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 57

               
               
               Conread position:5-466
               
               
               Cow position:chrX:1616362-1615889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 228

               
               
               Conread position:5-466
               
               
               Cow position:chrX:13177768-13177313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:316
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):88, 45

               
               
               Conread position:5-466
               
               
               Cow position:chrX:38218407-38218881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 70

               
               
               Conread position:5-469
               
               
               Cow position:chrX:12309699-12309222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 61

               
               
               Conread position:5-469
               
               
               Cow position:chrX:31489201-31489684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 192

               
               
               Conread position:5-476
               
               
               Cow position:chrX:11718091-11717610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 112

               
               
               Conread position:5-478
               
               
               Cow position:chrX:5017717-5017248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 81

               
               
               Conread position:5-484
               
               
               Cow position:chrX:11082925-11082445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 109

               
               
               Conread position:5-484
               
               
               Cow position:chrX:43527192-43527685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 320

               
               
               Conread position:6-280
               
               
               Cow position:chrX:4123525-4123802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 176

               
               
               Conread position:6-285
               
               
               Cow position:chrX:11806326-11806044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):122, 25

               
               
               Conread position:6-292
               
               
               Cow position:chrX:20742676-20742967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):121, 241

               
               
               Conread position:6-368
               
               
               Cow position:chrX:24105316-24105679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 249

               
               
               Conread position:6-368
               
               
               Cow position:chrX:28845534-28845888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 117

               
               
               Conread position:6-436
               
               
               Cow position:chrX:917680-917237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 124

               
               
               Conread position:6-443
               
               
               Cow position:chrX:13868387-13868841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 62

               
               
               Conread position:6-445
               
               
               Cow position:chrX:4633161-4632715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 46

               
               
               Conread position:6-450
               
               
               Cow position:chrX:7695454-7695893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 21

               
               
               Conread position:6-453
               
               
               Cow position:chrX:151591-152048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 154

               
               
               Conread position:6-457
               
               
               Cow position:chrX:11655769-11656233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 231

               
               
               Conread position:6-457
               
               
               Cow position:chrX:42470247-42469792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 174

               
               
               Conread position:6-458
               
               
               Cow position:chrX:17794685-17795134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 62

               
               
               Conread position:6-459
               
               
               Cow position:chrX:8796941-8797403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 21

               
               
               Conread position:6-460
               
               
               Cow position:chrX:20340201-20339737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 161

               
               
               Conread position:6-460
               
               
               Cow position:chrX:34401688-34402163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 31

               
               
               Conread position:6-460
               
               
               Cow position:chrX:40269166-40269651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 232

               
               
               Conread position:6-460
               
               
               Cow position:chrX:41526828-41526372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:296
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):160, 12

               
               
               Conread position:6-460
               
               
               Cow position:chrX:46532830-46532340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 118

               
               
               Conread position:6-464
               
               
               Cow position:chrX:45113326-45113780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 62

               
               
               Conread position:6-465
               
               
               Cow position:chrX:45501838-45502306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:316
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):126, 232

               
               
               Conread position:6-466
               
               
               Cow position:chrX:6413736-6414206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 146

               
               
               Conread position:6-469
               
               
               Cow position:chrX:12290427-12290889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:325
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):122, 31

               
               
               Conread position:6-469
               
               
               Cow position:chrX:27705283-27705750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 115

               
               
               Conread position:6-469
               
               
               Cow position:chrX:34554425-34554887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:311
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):112, 28

               
               
               Conread position:6-476
               
               
               Cow position:chrX:34502613-34503091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 62

               
               
               Conread position:6-489
               
               
               Cow position:chrX:30543592-30543096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 93

               
               
               Conread position:7-288
               
               
               Cow position:chrX:45043249-45043533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):103, 96

               
               
               Conread position:7-445
               
               
               Cow position:chrX:33639659-33640115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 26

               
               
               Conread position:7-445
               
               
               Cow position:chrX:37232102-37232547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 57

               
               
               Conread position:8-290
               
               
               Cow position:chrX:44737299-44737011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):31, 27

               
               
               Conread position:9-403
               
               
               Cow position:chrX:26441087-26440687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 308

               
               
               Conread position:9-414
               
               
               Cow position:chrX:34663166-34662737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:290
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):68, 120

               
               
               Conread position:9-421
               
               
               Cow position:chrX:40827054-40826635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:289
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):119, 148

               
               
               Conread position:9-460
               
               
               Cow position:chrX:15147491-15147041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 37

               
               
               Conread position:9-485
               
               
               Cow position:chrX:38007075-38006590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 221

               
               
               Conread position:10-289
               
               
               Cow position:chrX:15485931-15485651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 58

               
               
               Conread position:10-372
               
               
               Cow position:chrX:33466311-33466666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 83

               
               
               Conread position:13-290
               
               
               Cow position:chrX:3653460-3653733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):115, 197

               
               
               Conread position:13-457
               
               
               Cow position:chrX:10831815-10831336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 240

               
               
               Conread position:13-460
               
               
               Cow position:chrX:14599230-14599691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:13-485
               
               
               Cow position:chrX:40481175-40480685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 20

               
               
               Conread position:14-435
               
               
               Cow position:chrX:19689910-19690345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:298
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):42, 105

               
               
               Conread position:14-448
               
               
               Cow position:chrX:30133626-30133176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 128

               
               
               Conread position:16-373
               
               
               Cow position:chrX:6234735-6234389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:253
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):276, 80

               
               
               Conread position:20-278
               
               
               Cow position:chrX:19015146-19015400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 150

               
               
               Conread position:20-465
               
               
               Cow position:chrX:41238659-41238195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 104

               
               
               Conread position:24-311
               
               
               Cow position:chrX:25237886-25238168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 67

               
               
               Conread position:25-373
               
               
               Cow position:chrX:1176265-1175922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):166, 82

               
               
               Conread position:26-459
               
               
               Cow position:chrX:4269357-4268911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 32

               
               
               Conread position:28-469
               
               
               Cow position:chrX:31294828-31294406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):342, 49

               
               
               Conread position:30-424
               
               
               Cow position:chrX:46723027-46722614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:30-464
               
               
               Cow position:chrX:46033004-46032566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:299
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):180, 85

               
               
               Conread position:33-425
               
               
               Cow position:chrX:2467597-2468005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 48

               
               
               Conread position:33-469
               
               
               Cow position:chrX:27509300-27508861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 17

               
               
               Conread position:35-484
               
               
               Cow position:chrX:8925425-8925879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 33

               
               
               Conread position:37-294
               
               
               Cow position:chrX:9997610-9997357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):91, 25

               
               
               Conread position:37-460
               
               
               Cow position:chrX:8730800-8731250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:303
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:39-286
               
               
               Cow position:chrX:30921908-30922156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):93, 103

               
               
               Conread position:41-417
               
               
               Cow position:chrX:7496974-7497354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:265
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):86, 13

               
               
               Conread position:48-368
               
               
               Cow position:chrX:12018007-12018347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:48-448
               
               
               Cow position:chrX:17541696-17542102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):86, 65

               
               
               Conread position:49-290
               
               
               Cow position:chrX:32020389-32020145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:50-356
               
               
               Cow position:chrX:40647712-40648029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 63

               
               
               Conread position:50-478
               
               
               Cow position:chrX:6278774-6278323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:53-457
               
               
               Cow position:chrX:6690511-6690108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 27

               
               
               Conread position:57-466
               
               
               Cow position:chrX:20151591-20152016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 123

               
               
               Conread position:60-469
               
               
               Cow position:chrX:9635437-9635026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:286
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:62-459
               
               
               Cow position:chrX:41673849-41674259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:280
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):33, 7

               
               
               Conread position:62-460
               
               
               Cow position:chrX:24366083-24365668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):122, 34

               
               
               Conread position:62-460
               
               
               Cow position:chrX:28878416-28878019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 111

               
               
               Conread position:62-467
               
               
               Cow position:chrX:11073445-11073029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 151

               
               
               Conread position:64-274
               
               
               Cow position:chrX:678820-678608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):64, 150

               
               
               Conread position:69-466
               
               
               Cow position:chrX:27432166-27431753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:280
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):59, 162

               
               
               Conread position:72-451
               
               
               Cow position:chrX:45174600-45174996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 159

               
               
               Conread position:74-311
               
               
               Cow position:chrX:35284375-35284618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):33, 112

               
               
               Conread position:77-290
               
               
               Cow position:chrX:25411601-25411815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):85, 40

               
               
               Conread position:77-356
               
               
               Cow position:chrX:9953902-9954182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):51, 204

               
               
               Conread position:77-368
               
               
               Cow position:chrX:9855061-9855353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):55, 204

               
               
               Conread position:77-372
               
               
               Cow position:chrX:44053019-44053320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):55, 149

               
               
               Conread position:77-379
               
               
               Cow position:chrX:39938756-39938457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):114, 27

               
               
               Conread position:77-419
               
               
               Cow position:chrX:43049103-43049445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):31, 241

               
               
               Conread position:77-431
               
               
               Cow position:chrX:11455291-11454923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:77-450
               
               
               Cow position:chrX:37119360-37119737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):51, 88

               
               
               Conread position:77-451
               
               
               Cow position:chrX:44961508-44961897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 130

               
               
               Conread position:77-453
               
               
               Cow position:chrX:33493536-33493923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:77-457
               
               
               Cow position:chrX:16416269-16416652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 49

               
               
               Conread position:77-457
               
               
               Cow position:chrX:41884657-41884260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):51, 153

               
               
               Conread position:77-459
               
               
               Cow position:chrX:9416932-9416528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:277
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):51, 149

               
               
               Conread position:77-459
               
               
               Cow position:chrX:23514257-23513866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 151

               
               
               Conread position:77-459
               
               
               Cow position:chrX:38642021-38642404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):114, 47

               
               
               Conread position:77-460
               
               
               Cow position:chrX:27394253-27393871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 129

               
               
               Conread position:77-476
               
               
               Cow position:chrX:1514643-1514249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 113

               
               
               Conread position:78-306
               
               
               Cow position:chrX:19019348-19019112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):36, 17

               
               
               Conread position:78-373
               
               
               Cow position:chrX:41167202-41166902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:78-460
               
               
               Cow position:chrX:17888644-17888266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 77

               
               
               Conread position:78-460
               
               
               Cow position:chrX:42492748-42492369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 21

               
               
               Conread position:78-466
               
               
               Cow position:chrX:40035687-40035279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):39, 15

               
               
               Conread position:79-451
               
               
               Cow position:chrX:17662834-17662452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 151

               
               
               Conread position:79-459
               
               
               Cow position:chrX:27772193-27771814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):288, 38

               
               
               Conread position:79-465
               
               
               Cow position:chrX:4768513-4768895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:264
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):49, 91

               
               
               Conread position:80-357
               
               
               Cow position:chrX:20752027-20752299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):219, 35

               
               
               Conread position:80-373
               
               
               Cow position:chrX:11589828-11589528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):49, 35

               
               
               Conread position:82-472
               
               
               Cow position:chrX:38549214-38549614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 158

               
               
               Conread position:82-472
               
               
               Cow position:chrX:39558582-39558184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 130

               
               
               Conread position:83-460
               
               
               Cow position:chrX:36975716-36976106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):45, 183

               
               
               Conread position:83-465
               
               
               Cow position:chrX:9201314-9201709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:272
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):45, 32

               
               
               Conread position:84-460
               
               
               Cow position:chrX:13382092-13382480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:85-455
               
               
               Cow position:chrX:5900226-5900614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 107

               
               
               Conread position:85-460
               
               
               Cow position:chrX:12980060-12979679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):43, 10

               
               
               Conread position:85-485
               
               
               Cow position:chrX:37910222-37910623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:86-343
               
               
               Cow position:chrX:37048811-37048551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 160

               
               
               Conread position:86-399
               
               
               Cow position:chrX:12405599-12405287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):143, 29

               
               
               Conread position:86-453
               
               
               Cow position:chrX:7721754-7722138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 145

               
               
               Conread position:86-459
               
               
               Cow position:chrX:35542661-35543041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 144

               
               
               Conread position:86-469
               
               
               Cow position:chrX:42381330-42380947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 113

               
               
               Conread position:87-230
               
               
               Cow position:chrX:18812029-18812169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:87-447
               
               
               Cow position:chrX:10959631-10959253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):24, 7

               
               
               Conread position:90-453
               
               
               Cow position:chrX:44396789-44397160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):38, 17

               
               
               Conread position:91-290
               
               
               Cow position:chrX:46315604-46315403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):37, 23

               
               
               Conread position:91-356
               
               
               Cow position:chrX:29509669-29509395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:91-407
               
               
               Cow position:chrX:21642703-21642380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):37, 22

               
               
               Conread position:92-274
               
               
               Cow position:chrX:16324187-16324006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 13

               
               
               Conread position:93-458
               
               
               Cow position:chrX:6488363-6488723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):35, 84

               
               
               Conread position:93-466
               
               
               Cow position:chrX:6265809-6265436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):35, 85

               
               
               Conread position:94-379
               
               
               Cow position:chrX:36961414-36961707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):34, 23

               
               
               Conread position:95-436
               
               
               Cow position:chrX:37574635-37574971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):33, 111

               
               
               Conread position:96-448
               
               
               Cow position:chrX:1503119-1503470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:96-453
               
               
               Cow position:chrX:46073042-46072669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 93

               
               
               Conread position:96-459
               
               
               Cow position:chrX:23091661-23092027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 130

               
               
               Conread position:96-460
               
               
               Cow position:chrX:29602053-29601673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 133

               
               
               Conread position:96-469
               
               
               Cow position:chrX:36283125-36283503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 134

               
               
               Conread position:98-444
               
               
               Cow position:chrX:11633460-11633821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:99-457
               
               
               Cow position:chrX:37781330-37780956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:257
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:99-479
               
               
               Cow position:chrX:29120841-29121223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:262
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):193, 27

               
               
               Conread position:100-343
               
               
               Cow position:chrX:45015369-45015606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 79

               
               
               Conread position:101-484
               
               
               Cow position:chrX:39126123-39126505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:247
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):255, 25

               
               
               Conread position:104-460
               
               
               Cow position:chrX:27174782-27175153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:250
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:105-445
               
               
               Cow position:chrX:3579735-3580084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):27, 12

               
               
               Conread position:109-349
               
               
               Cow position:chrX:26285772-26286017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):19, 138

               
               
               Conread position:109-459
               
               
               Cow position:chrX:4826035-4825679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 116

               
               
               Conread position:110-459
               
               
               Cow position:chrX:46587611-46587978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:118-450
               
               
               Cow position:chrX:43780051-43779707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):9, 208

               
               
               Conread position:118-452
               
               
               Cow position:chrX:1499471-1499816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):14, 64

               
               
               Conread position:126-466
               
               
               Cow position:chrX:8869598-8869236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 106

               
               
               Conread position:129-453
               
               
               Cow position:chrX:36355936-36356253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):168, 24

               
               
               Conread position:130-289
               
               
               Cow position:chrX:31256682-31256839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:130-432
               
               
               Cow position:chrX:47484457-47484138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):62, 312

               
               
               Conread position:130-440
               
               
               Cow position:chrX:7161886-7162191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):180, 9

               
               
               Conread position:130-452
               
               
               Cow position:chrX:42235719-42235376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:248
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):40, 109

               
               
               Conread position:130-458
               
               
               Cow position:chrX:31311840-31312182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:246
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):61, 110

               
               
               Conread position:130-458
               
               
               Cow position:chrX:33000718-33001060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):83, 67

               
               
               Conread position:130-460
               
               
               Cow position:chrX:23785468-23785803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):58, 170

               
               
               Conread position:130-460
               
               
               Cow position:chrX:35383205-35382882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:132-351
               
               
               Cow position:chrX:45874815-45875036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):175, 0

               
               
               Conread position:132-460
               
               
               Cow position:chrX:43730398-43730069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:240
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):81, 58

               
               
               Conread position:133-460
               
               
               Cow position:chrX:32820847-32821187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:240
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:134-307
               
               
               Cow position:chrX:7336645-7336822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:136-460
               
               
               Cow position:chrX:45098932-45099283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:137-469
               
               
               Cow position:chrX:31252239-31252571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):24, 89

               
               
               Conread position:142-462
               
               
               Cow position:chrX:22387421-22387093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):28, 184

               
               
               Conread position:142-466
               
               
               Cow position:chrX:35885903-35885564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:143-444
               
               
               Cow position:chrX:46433310-46433630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:143-474
               
               
               Cow position:chrX:6407376-6407712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):67, 48

               
               
               Conread position:144-460
               
               
               Cow position:chrX:4398954-4399274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):47, 85

               
               
               Conread position:144-466
               
               
               Cow position:chrX:34792482-34792152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):47, 84

               
               
               Conread position:150-370
               
               
               Cow position:chrX:41992207-41991988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):87, 21

               
               
               Conread position:152-448
               
               
               Cow position:chrX:41068564-41068868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):140, 21

               
               
               Conread position:164-453
               
               
               Cow position:chrX:27227972-27228275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):72, 148

               
               
               Conread position:166-460
               
               
               Cow position:chrX:29680409-29680105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):126, 59

               
               
               Conread position:172-462
               
               
               Cow position:chrX:11614556-11614849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 140

               
               
               Conread position:177-453
               
               
               Cow position:chrX:45976782-45977076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:177-460
               
               
               Cow position:chrX:34313891-34314179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 27

               
               
               Conread position:178-460
               
               
               Cow position:chrX:7710680-7710383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:181-405
               
               
               Cow position:chrX:27685113-27685349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:181-460
               
               
               Cow position:chrX:616396-616103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):113, 44

               
               
               Conread position:181-460
               
               
               Cow position:chrX:41027023-41027314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):111, 56

               
               
               Conread position:186-445
               
               
               Cow position:chrX:45875262-45875531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):56, 250

               
               
               Conread position:186-448
               
               
               Cow position:chrX:48385489-48385226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):40, 110

               
               
               Conread position:186-459
               
               
               Cow position:chrX:40685460-40685174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):110, 48

               
               
               Conread position:186-459
               
               
               Cow position:chrX:42873263-42873539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):38, 27

               
               
               Conread position:186-460
               
               
               Cow position:chrX:43115022-43115305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):28, 49

               
               
               Conread position:186-470
               
               
               Cow position:chrX:38728608-38728897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):183, 129

               
               
               Conread position:187-460
               
               
               Cow position:chrX:11085185-11084908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):180, 117

               
               
               Conread position:188-460
               
               
               Cow position:chrX:9365802-9365521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):104, 49

               
               
               Conread position:191-460
               
               
               Cow position:chrX:27946183-27945897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:192-478
               
               
               Cow position:chrX:5679688-5679399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):177, 5

               
               
               Conread position:196-450
               
               
               Cow position:chrX:13853501-13853766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):14, 28

               
               
               Conread position:198-460
               
               
               Cow position:chrX:26881685-26881407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 27

               
               
               Conread position:213-460
               
               
               Cow position:chrX:16348672-16348416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):14, 225

               
               
               Conread position:216-437
               
               
               Cow position:chrX:31515070-31515306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):76, 17

               
               
               Conread position:216-451
               
               
               Cow position:chrX:29194135-29194376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):76, 9

               
               
               Conread position:216-460
               
               
               Cow position:chrX:169639-169389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):78, 38

               
               
               Conread position:219-460
               
               
               Cow position:chrX:29549644-29549395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):73, 193

               
               
               Conread position:221-453
               
               
               Cow position:chrX:23113181-23113434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):9, 47

               
               
               Conread position:221-460
               
               
               Cow position:chrX:27261093-27261347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:225-457
               
               
               Cow position:chrX:29050156-29050400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):71, 130

               
               
               Conread position:226-461
               
               
               Cow position:chrX:42855365-42855614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):66, 51

               
               
               Conread position:227-467
               
               
               Cow position:chrX:34222625-34222876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):62, 185

               
               
               Conread position:238-453
               
               
               Cow position:chrX:39220002-39220227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:238-457
               
               
               Cow position:chrX:23562557-23562784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):54, 39

               
               
               Conread position:243-453
               
               
               Cow position:chrX:25036914-25037135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:246-444
               
               
               Cow position:chrX:36514964-36514753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:252-459
               
               
               Cow position:chrX:23561797-23562013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):40, 65

               
               
               Conread position:254-452
               
               
               Cow position:chrX:6463549-6463745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 105

               
               
               Conread position:254-453
               
               
               Cow position:chrX:15820535-15820742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):39, 61

               
               
               Conread position:254-458
               
               
               Cow position:chrX:38654494-38654288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):38, 132

               
               
               Conread position:254-489
               
               
               Cow position:chrX:41271059-41270802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:258-446
               
               
               Cow position:chrX:25788954-25788764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):112, 44

               
               
               Conread position:258-466
               
               
               Cow position:chrX:27511369-27511589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:259-458
               
               
               Cow position:chrX:40108573-40108363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 53

               
               
               Conread position:259-459
               
               
               Cow position:chrX:31627038-31626823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:260-469
               
               
               Cow position:chrX:32978133-32977922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 56

               
               
               Conread position:269-444
               
               
               Cow position:chrX:19943284-19943097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):23, 127

               
               
               Conread position:270-484
               
               
               Cow position:chrX:6260194-6259969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:274-460
               
               
               Cow position:chrX:29553243-29553441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:277-460
               
               
               Cow position:chrX:18964864-18964673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:286-455
               
               
               Cow position:chrX:17966316-17966492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:292-466
               
               
               Cow position:chrX:23188798-23188621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):83, 22

               
               
               Conread position:301-459
               
               
               Cow position:chrX:3806670-3806837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:304-458
               
               
               Cow position:chrX:4559728-4559886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:313-459
               
               
               Cow position:chrX:1337279-1337136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:314-460
               
               
               Cow position:chrX:42506226-42506078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:316-458
               
               
               Cow position:chrX:23498674-23498527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:324-460
               
               
               Cow position:chrX:1122532-1122392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:327-460
               
               
               Cow position:chrX:23266429-23266569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):41, 122