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Cow genome map

           
Conread name:
           
rpgl15_e18.y1
        

               
Conread position:
               
23-218
               

               
Cow position:
               
chr1:80359043-80358840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
21, 60
               

               
Conread position:
               
28-178
               

               
Cow position:
               
chr1:33551062-33551212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
108, 53
               

               
Conread position:
               
30-198
               

               
Cow position:
               
chr1:18027623-18027455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
110, 51
               

               
Conread position:
               
32-183
               

               
Cow position:
               
chr1:67286640-67286785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
105, 25
               

               
Conread position:
               
32-210
               

               
Cow position:
               
chr1:72080928-72081105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
104, 9
               

               
Conread position:
               
33-184
               

               
Cow position:
               
chr1:62244498-62244347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
103, 48
               

               
Conread position:
               
33-198
               

               
Cow position:
               
chr1:82918516-82918350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
8, 49
               

               
Conread position:
               
33-213
               

               
Cow position:
               
chr1:62853696-62853511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
103, 48
               

               
Conread position:
               
33-218
               

               
Cow position:
               
chr1:78290014-78290199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
103, 8
               

               
Conread position:
               
35-163
               

               
Cow position:
               
chr1:40954054-40954181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-175
               

               
Cow position:
               
chr1:89740111-89739978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-178
               

               
Cow position:
               
chr1:85780629-85780486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
101, 46
               

               
Conread position:
               
35-184
               

               
Cow position:
               
chr1:58335987-58336135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
101, 10
               

               
Conread position:
               
35-184
               

               
Cow position:
               
chr1:60339457-60339606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
101, 46
               

               
Conread position:
               
35-191
               

               
Cow position:
               
chr1:42290540-42290691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
102, 6
               

               
Conread position:
               
35-191
               

               
Cow position:
               
chr1:52232963-52232807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-191
               

               
Cow position:
               
chr1:101857833-101857678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
102, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:13645865-13646026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
101, 42
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:33712215-33712378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
101, 46
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:38414952-38415112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:40308215-40308372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
102, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:59674602-59674764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:72657139-72657301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:87207275-87207114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:88635524-88635685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:89770533-89770370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
101, 49
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:89899551-89899391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:97123964-97124122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
81, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:99348885-99348723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr1:101149985-101150147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-218
               

               
Cow position:
               
chr1:45097849-45098031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-239
               

               
Cow position:
               
chr1:18406043-18405837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-254
               

               
Cow position:
               
chr1:57568103-57568324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
101, 46
               

               
Conread position:
               
35-278
               

               
Cow position:
               
chr1:72136791-72137041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
102, 50
               

               
Conread position:
               
35-432
               

               
Cow position:
               
chr1:40513226-40512822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 6
               

               
Conread position:
               
35-432
               

               
Cow position:
               
chr1:94253069-94253475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 46
               

               
Conread position:
               
36-192
               

               
Cow position:
               
chr1:39543922-39544078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
100, 45
               

               
Conread position:
               
36-198
               

               
Cow position:
               
chr1:28801250-28801086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
5, 46
               

               
Conread position:
               
36-218
               

               
Cow position:
               
chr1:72039196-72039014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
102, 48
               

               
Conread position:
               
37-197
               

               
Cow position:
               
chr1:8554482-8554642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
98, 44
               

               
Conread position:
               
38-197
               

               
Cow position:
               
chr1:40053510-40053669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
98, 43
               

               
Conread position:
               
39-278
               

               
Cow position:
               
chr1:102556206-102556443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
97, 42
               

               
Conread position:
               
40-197
               

               
Cow position:
               
chr1:17012582-17012425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
96, 46
               

               
Conread position:
               
40-198
               

               
Cow position:
               
chr1:1461175-1461018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
97, 43
               

               
Conread position:
               
40-198
               

               
Cow position:
               
chr1:28723029-28723190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
58, 44
               

               
Conread position:
               
40-198
               

               
Cow position:
               
chr1:69537056-69537211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
96, 41
               

               
Conread position:
               
40-198
               

               
Cow position:
               
chr1:87244967-87245125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
96, 41
               

               
Conread position:
               
40-200
               

               
Cow position:
               
chr1:82652810-82652974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
97, 41
               

               
Conread position:
               
41-165
               

               
Cow position:
               
chr1:99911116-99911240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
95, 39
               

               
Conread position:
               
41-171
               

               
Cow position:
               
chr1:68607386-68607256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-173
               

               
Cow position:
               
chr1:63605624-63605492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-178
               

               
Cow position:
               
chr1:79335647-79335510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-180
               

               
Cow position:
               
chr1:67834982-67834843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-181
               

               
Cow position:
               
chr1:40684533-40684393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-182
               

               
Cow position:
               
chr1:56489998-56490139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-183
               

               
Cow position:
               
chr1:42736610-42736751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-183
               

               
Cow position:
               
chr1:69403137-69403279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-183
               

               
Cow position:
               
chr1:69922281-69922139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-183
               

               
Cow position:
               
chr1:72981424-72981566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-183
               

               
Cow position:
               
chr1:85791844-85791986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr1:11291948-11291805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
95, 29
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr1:25179873-25179730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr1:28873231-28873374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr1:30283385-30283242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr1:56193774-56193631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr1:58883910-58883767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr1:59209981-59209838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr1:65386485-65386628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
95, 39
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr1:73070899-73070756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr1:85882160-85882302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr1:86699060-86698917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
96, 49
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr1:88130928-88131071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
95, 39
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr1:94659839-94659982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr1:95239527-95239670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr1:102434881-102434739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-197
               

               
Cow position:
               
chr1:18880235-18880079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
41-197
               

               
Cow position:
               
chr1:28711074-28711230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-197
               

               
Cow position:
               
chr1:31396848-31397004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
95, 42
               

               
Conread position:
               
41-197
               

               
Cow position:
               
chr1:61309160-61309317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-197
               

               
Cow position:
               
chr1:62925771-62925927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
41-197
               

               
Cow position:
               
chr1:86547977-86547821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-198
               

               
Cow position:
               
chr1:8825208-8825364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-198
               

               
Cow position:
               
chr1:57366975-57366818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-198
               

               
Cow position:
               
chr1:57656702-57656858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
41-198
               

               
Cow position:
               
chr1:71562416-71562259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-198
               

               
Cow position:
               
chr1:72186715-72186562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
132, 40
               

               
Conread position:
               
41-198
               

               
Cow position:
               
chr1:97226548-97226397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
97, 19
               

               
Conread position:
               
41-199
               

               
Cow position:
               
chr1:13450364-13450526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-199
               

               
Cow position:
               
chr1:17036399-17036237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-199
               

               
Cow position:
               
chr1:20829047-20829209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
93, 40
               

               
Conread position:
               
41-204
               

               
Cow position:
               
chr1:29362454-29362620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-213
               

               
Cow position:
               
chr1:82912986-82912815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-217
               

               
Cow position:
               
chr1:5502091-5502267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-217
               

               
Cow position:
               
chr1:100597216-100597038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
95, 50
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr1:21087571-21087754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr1:31365919-31365743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr1:79636773-79636598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
95, 24
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr1:82564661-82564844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr1:82924022-82923843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
95, 39
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr1:91899154-91899337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-222
               

               
Cow position:
               
chr1:18244227-18244044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-224
               

               
Cow position:
               
chr1:33851436-33851624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-224
               

               
Cow position:
               
chr1:40574373-40574560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
96, 42
               

               
Conread position:
               
41-224
               

               
Cow position:
               
chr1:56723313-56723501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
95, 29
               

               
Conread position:
               
41-224
               

               
Cow position:
               
chr1:69766620-69766809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-243
               

               
Cow position:
               
chr1:49974033-49973833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-278
               

               
Cow position:
               
chr1:25887003-25886760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
96, 43
               

               
Conread position:
               
41-278
               

               
Cow position:
               
chr1:30027389-30027146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
96, 44
               

               
Conread position:
               
41-391
               

               
Cow position:
               
chr1:55322900-55322544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
43-176
               

               
Cow position:
               
chr1:55276325-55276193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
93, 38
               

               
Conread position:
               
43-199
               

               
Cow position:
               
chr1:9382385-9382228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
93, 38
               

               
Conread position:
               
43-214
               

               
Cow position:
               
chr1:54365667-54365501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
86, 21
               

               
Conread position:
               
43-278
               

               
Cow position:
               
chr1:34689499-34689735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
93, 38
               

               
Conread position:
               
44-184
               

               
Cow position:
               
chr1:56163487-56163627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
92, 37
               

               
Conread position:
               
44-184
               

               
Cow position:
               
chr1:76622797-76622657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
92, 37
               

               
Conread position:
               
44-184
               

               
Cow position:
               
chr1:93854681-93854821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
92, 37
               

               
Conread position:
               
44-186
               

               
Cow position:
               
chr1:76545379-76545237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
92, 37
               

               
Conread position:
               
44-192
               

               
Cow position:
               
chr1:12062036-12061889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
93, 37
               

               
Conread position:
               
44-220
               

               
Cow position:
               
chr1:56144178-56143998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
92, 37
               

               
Conread position:
               
47-165
               

               
Cow position:
               
chr1:48245977-48246095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
47-184
               

               
Cow position:
               
chr1:52359114-52358977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
47-184
               

               
Cow position:
               
chr1:79456809-79456672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
47-196
               

               
Cow position:
               
chr1:76752490-76752340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
47-198
               

               
Cow position:
               
chr1:21999794-21999643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
90, 34
               

               
Conread position:
               
47-198
               

               
Cow position:
               
chr1:87516120-87515969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
90, 34
               

               
Conread position:
               
47-260
               

               
Cow position:
               
chr1:67901767-67901548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
47-421
               

               
Cow position:
               
chr1:42870079-42869691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 34
               

               
Conread position:
               
47-432
               

               
Cow position:
               
chr1:21720052-21720438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 34
               

               
Conread position:
               
50-199
               

               
Cow position:
               
chr1:91718472-91718323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
86, 31
               

               
Conread position:
               
52-178
               

               
Cow position:
               
chr1:30534857-30534730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
55-178
               

               
Cow position:
               
chr1:17941616-17941493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 35
               

               
Conread position:
               
62-184
               

               
Cow position:
               
chr1:91892945-91892823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
74, 19
               

               
Conread position:
               
62-217
               

               
Cow position:
               
chr1:5318921-5319076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
73, 24
               

               
Conread position:
               
62-218
               

               
Cow position:
               
chr1:89479484-89479639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
73, 19
               

               
Conread position:
               
63-434
               

               
Cow position:
               
chr1:24650935-24651317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 21
               

               
Conread position:
               
69-192
               

               
Cow position:
               
chr1:5355312-5355435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
67, 12
               

               
Conread position:
               
80-218
               

               
Cow position:
               
chr1:57424643-57424498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
135-382
               

               
Cow position:
               
chr1:38387456-38387212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 111
               

               
Conread position:
               
210-434
               

               
Cow position:
               
chr1:67286840-67287061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
7, 103
               

               
Conread position:
               
30-178
               

               
Cow position:
               
chr10:57989820-57989676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
106, 50
               

               
Conread position:
               
33-197
               

               
Cow position:
               
chr10:19758520-19758685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
21, 49
               

               
Conread position:
               
33-197
               

               
Cow position:
               
chr10:19802725-19802890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
21, 49
               

               
Conread position:
               
35-151
               

               
Cow position:
               
chr10:39905118-39905232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-184
               

               
Cow position:
               
chr10:21487090-21487239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
101, 46
               

               
Conread position:
               
35-184
               

               
Cow position:
               
chr10:39041127-39040978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
101, 46
               

               
Conread position:
               
35-185
               

               
Cow position:
               
chr10:13365695-13365545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
101, 46
               

               
Conread position:
               
35-194
               

               
Cow position:
               
chr10:46694200-46694044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-195
               

               
Cow position:
               
chr10:47157124-47157283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
101, 10
               

               
Conread position:
               
35-197
               

               
Cow position:
               
chr10:10477965-10477798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
72, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr10:25498528-25498690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
101, 10
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr10:39853838-39853672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
26, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr10:62216782-62216945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr10:62778523-62778686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
101, 10
               

               
Conread position:
               
35-205
               

               
Cow position:
               
chr10:34686069-34686239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
96, 6
               

               
Conread position:
               
35-212
               

               
Cow position:
               
chr10:60192306-60192483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
101, 48
               

               
Conread position:
               
35-238
               

               
Cow position:
               
chr10:19511782-19511983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
40-432
               

               
Cow position:
               
chr10:38546045-38545650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 45
               

               
Conread position:
               
41-170
               

               
Cow position:
               
chr10:29846470-29846341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-171
               

               
Cow position:
               
chr10:7282506-7282376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-178
               

               
Cow position:
               
chr10:62408676-62408539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-180
               

               
Cow position:
               
chr10:19497135-19496996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-183
               

               
Cow position:
               
chr10:47906959-47907101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr10:280440-280297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr10:1375712-1375857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
66, 39
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr10:2123081-2122938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr10:8290163-8290302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
95, 41
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr10:16925717-16925859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr10:21740571-21740428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr10:25359580-25359723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
93, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr10:32650914-32651057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
95, 39
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr10:38345181-38345038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr10:51952437-51952298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-191
               

               
Cow position:
               
chr10:32578470-32578620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-196
               

               
Cow position:
               
chr10:57559355-57559200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-198
               

               
Cow position:
               
chr10:11685490-11685331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-198
               

               
Cow position:
               
chr10:29696416-29696569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
41-198
               

               
Cow position:
               
chr10:37770002-37770161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-199
               

               
Cow position:
               
chr10:21400490-21400328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-199
               

               
Cow position:
               
chr10:25565077-25564915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
93, 40
               

               
Conread position:
               
41-199
               

               
Cow position:
               
chr10:41567284-41567445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-204
               

               
Cow position:
               
chr10:24977958-24977794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
96, 34
               

               
Conread position:
               
41-214
               

               
Cow position:
               
chr10:22842930-22843102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr10:124491-124668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
95, 39
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr10:4192052-4191862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr10:14804017-14804200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr10:39179964-39180146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr10:39817182-39816999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr10:40152274-40152094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
88, 40
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr10:41157628-41157811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-278
               

               
Cow position:
               
chr10:14860147-14860393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
148, 40
               

               
Conread position:
               
41-278
               

               
Cow position:
               
chr10:15861956-15861705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
175, 40
               

               
Conread position:
               
41-278
               

               
Cow position:
               
chr10:46191539-46191781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
94, 40
               

               
Conread position:
               
41-280
               

               
Cow position:
               
chr10:33346781-33347029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 43
               

               
Conread position:
               
41-434
               

               
Cow position:
               
chr10:42628804-42629202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
43-280
               

               
Cow position:
               
chr10:24298671-24298428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
150, 38
               

               
Conread position:
               
47-218
               

               
Cow position:
               
chr10:19496099-19495922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
47-278
               

               
Cow position:
               
chr10:8328082-8327846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
166, 37
               

               
Conread position:
               
47-310
               

               
Cow position:
               
chr10:31523985-31524253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
89, 37
               

               
Conread position:
               
49-218
               

               
Cow position:
               
chr10:41877107-41877281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
87, 32
               

               
Conread position:
               
51-346
               

               
Cow position:
               
chr10:54979280-54978978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 30
               

               
Conread position:
               
57-218
               

               
Cow position:
               
chr10:14952066-14952227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
78, 24
               

               
Conread position:
               
62-197
               

               
Cow position:
               
chr10:56064875-56065010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
74, 19
               

               
Conread position:
               
80-221
               

               
Cow position:
               
chr10:49310705-49310847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
81-183
               

               
Cow position:
               
chr10:68599073-68598970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
87-276
               

               
Cow position:
               
chr10:42679599-42679785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
50, 143
               

               
Conread position:
               
92-198
               

               
Cow position:
               
chr10:24061575-24061468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
116-278
               

               
Cow position:
               
chr10:60489849-60490022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 39
               

               
Conread position:
               
135-381
               

               
Cow position:
               
chr10:8339171-8339424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
67, 30
               

               
Conread position:
               
276-431
               

               
Cow position:
               
chr10:28931299-28931144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
119, 42
               

               
Conread position:
               
33-182
               

               
Cow position:
               
chr11:4041265-4041116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
103, 50
               

               
Conread position:
               
35-137
               

               
Cow position:
               
chr11:10210149-10210048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
35-158
               

               
Cow position:
               
chr11:40776729-40776606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
101, 46
               

               
Conread position:
               
35-185
               

               
Cow position:
               
chr11:30305044-30305196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
97, 46
               

               
Conread position:
               
35-194
               

               
Cow position:
               
chr11:8261889-8261732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-194
               

               
Cow position:
               
chr11:9220306-9220147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-197
               

               
Cow position:
               
chr11:87127654-87127813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr11:12351251-12351089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr11:37065308-37065142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
102, 46
               

               
Conread position:
               
35-199
               

               
Cow position:
               
chr11:8519807-8519966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
83, 6
               

               
Conread position:
               
35-217
               

               
Cow position:
               
chr11:25527372-25527557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-218
               

               
Cow position:
               
chr11:66726278-66726468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
97, 10
               

               
Conread position:
               
35-427
               

               
Cow position:
               
chr11:10090146-10090554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
36-143
               

               
Cow position:
               
chr11:44860714-44860608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
100, 12
               

               
Conread position:
               
36-199
               

               
Cow position:
               
chr11:34020703-34020867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
29, 45
               

               
Conread position:
               
40-198
               

               
Cow position:
               
chr11:9659569-9659411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
96, 41
               

               
Conread position:
               
40-198
               

               
Cow position:
               
chr11:21466895-21467053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
96, 41
               

               
Conread position:
               
40-198
               

               
Cow position:
               
chr11:37491824-37491670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
98, 30
               

               
Conread position:
               
41-165
               

               
Cow position:
               
chr11:9734828-9734705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-170
               

               
Cow position:
               
chr11:41170873-41170744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-171
               

               
Cow position:
               
chr11:12358606-12358476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-171
               

               
Cow position:
               
chr11:19102667-19102537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
41-171
               

               
Cow position:
               
chr11:28229934-28229804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
93, 40
               

               
Conread position:
               
41-171
               

               
Cow position:
               
chr11:77728701-77728571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-178
               

               
Cow position:
               
chr11:28054781-28054644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-178
               

               
Cow position:
               
chr11:29668809-29668675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
41-178
               

               
Cow position:
               
chr11:37093242-37093106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
41-182
               

               
Cow position:
               
chr11:7113416-7113554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
95, 11
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr11:1496255-1496112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr11:5343398-5343255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr11:10847264-10847404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
95, 28
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr11:11987927-11988069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr11:17107867-17107724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr11:24393136-24393279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr11:26125112-26124969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr11:37477300-37477157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr11:38505785-38505643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
95, 15
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr11:43514811-43514668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr11:52419207-52419350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr11:53287636-53287494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
95, 45
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr11:57628227-57628084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr11:72110146-72110003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-191
               

               
Cow position:
               
chr11:54209436-54209582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
95, 34
               

               
Conread position:
               
41-197
               

               
Cow position:
               
chr11:12093376-12093533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-197
               

               
Cow position:
               
chr11:20920926-20920770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-197
               

               
Cow position:
               
chr11:36744361-36744205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-197
               

               
Cow position:
               
chr11:61401232-61401076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-197
               

               
Cow position:
               
chr11:64045817-64045973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-197
               

               
Cow position:
               
chr11:73477127-73477283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
95, 46
               

               
Conread position:
               
41-198
               

               
Cow position:
               
chr11:45111188-45111345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-199
               

               
Cow position:
               
chr11:15983443-15983605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-199
               

               
Cow position:
               
chr11:67450317-67450479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-212
               

               
Cow position:
               
chr11:42429152-42429324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
94, 40
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr11:3492830-3493013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr11:4027744-4027565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
97, 40
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr11:8244526-8244702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
95, 24
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr11:19064430-19064247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr11:67846752-67846569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-224
               

               
Cow position:
               
chr11:33194734-33194545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
93, 40
               

               
Conread position:
               
41-238
               

               
Cow position:
               
chr11:31925987-31926187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
41-239
               

               
Cow position:
               
chr11:71329463-71329661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-382
               

               
Cow position:
               
chr11:8282895-8283235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
43-176
               

               
Cow position:
               
chr11:77235536-77235669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
93, 38
               

               
Conread position:
               
43-184
               

               
Cow position:
               
chr11:63659760-63659626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
43-432
               

               
Cow position:
               
chr11:7316694-7317092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 37
               

               
Conread position:
               
44-184
               

               
Cow position:
               
chr11:85393989-85393849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
93, 37
               

               
Conread position:
               
47-184
               

               
Cow position:
               
chr11:23877127-23877264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
47-184
               

               
Cow position:
               
chr11:32450692-32450829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
48-212
               

               
Cow position:
               
chr11:4065407-4065239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
82, 33
               

               
Conread position:
               
49-278
               

               
Cow position:
               
chr11:17220388-17220161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
88, 32
               

               
Conread position:
               
51-192
               

               
Cow position:
               
chr11:76374371-76374231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
86, 30
               

               
Conread position:
               
53-198
               

               
Cow position:
               
chr11:8887327-8887182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
83, 28
               

               
Conread position:
               
62-178
               

               
Cow position:
               
chr11:53432226-53432110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
74, 28
               

               
Conread position:
               
62-215
               

               
Cow position:
               
chr11:28063516-28063667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
75, 19
               

               
Conread position:
               
74-194
               

               
Cow position:
               
chr11:59369460-59369580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
62, 7
               

               
Conread position:
               
75-171
               

               
Cow position:
               
chr11:15998788-15998885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
84-198
               

               
Cow position:
               
chr11:8267681-8267566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
93-198
               

               
Cow position:
               
chr11:256317-256211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
227-432
               

               
Cow position:
               
chr11:7113899-7114099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
167, 19
               

               
Conread position:
               
32-184
               

               
Cow position:
               
chr12:22205650-22205499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
105, 49
               

               
Conread position:
               
35-184
               

               
Cow position:
               
chr12:1402592-1402739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
101, 46
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr12:2282646-2282809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
101, 46
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr12:8311282-8311444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr12:21902040-21902202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
95, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr12:45261724-45261886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-223
               

               
Cow position:
               
chr12:18501135-18501315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
135, 43
               

               
Conread position:
               
35-226
               

               
Cow position:
               
chr12:2900-3091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
92, 6
               

               
Conread position:
               
36-198
               

               
Cow position:
               
chr12:21198061-21198223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
101, 47
               

               
Conread position:
               
36-199
               

               
Cow position:
               
chr12:37558657-37558824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
100, 45
               

               
Conread position:
               
40-205
               

               
Cow position:
               
chr12:23240109-23240273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
97, 41
               

               
Conread position:
               
41-178
               

               
Cow position:
               
chr12:42859721-42859584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr12:3361010-3361153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr12:11098348-11098491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
95, 80
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr12:21426800-21426943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr12:25100955-25100812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr12:27932839-27932696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-185
               

               
Cow position:
               
chr12:20998026-20997883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
97, 40
               

               
Conread position:
               
41-197
               

               
Cow position:
               
chr12:251951-251794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
41-197
               

               
Cow position:
               
chr12:21941871-21942031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
41-197
               

               
Cow position:
               
chr12:33986268-33986424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
95, 39
               

               
Conread position:
               
41-198
               

               
Cow position:
               
chr12:5861260-5861416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
95, 28
               

               
Conread position:
               
41-198
               

               
Cow position:
               
chr12:14662527-14662370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-213
               

               
Cow position:
               
chr12:43031278-43031108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
95, 43
               

               
Conread position:
               
41-214
               

               
Cow position:
               
chr12:2838748-2838582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr12:32653650-32653833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-224
               

               
Cow position:
               
chr12:21254550-21254362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-469
               

               
Cow position:
               
chr12:15951158-15950728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 33
               

               
Conread position:
               
44-198
               

               
Cow position:
               
chr12:22332733-22332887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
92, 37
               

               
Conread position:
               
44-217
               

               
Cow position:
               
chr12:28765910-28765737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
92, 37
               

               
Conread position:
               
47-238
               

               
Cow position:
               
chr12:6406536-6406348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
80-198
               

               
Cow position:
               
chr12:31544922-31545041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
89-197
               

               
Cow position:
               
chr12:4157530-4157639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
16-183
               

               
Cow position:
               
chr13:3654464-3654299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
120, 25
               

               
Conread position:
               
18-432
               

               
Cow position:
               
chr13:54284430-54284856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 290
               

               
Conread position:
               
27-218
               

               
Cow position:
               
chr13:30063996-30064179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
100, 42
               

               
Conread position:
               
33-227
               

               
Cow position:
               
chr13:34325801-34325604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
11, 51
               

               
Conread position:
               
33-429
               

               
Cow position:
               
chr13:20542500-20542096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 50
               

               
Conread position:
               
35-171
               

               
Cow position:
               
chr13:4483676-4483809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
35-175
               

               
Cow position:
               
chr13:2908570-2908430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
99, 6
               

               
Conread position:
               
35-185
               

               
Cow position:
               
chr13:3567674-3567823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-185
               

               
Cow position:
               
chr13:4178771-4178622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr13:3277034-3277196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr13:30657094-30656935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
102, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr13:33824851-33824693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr13:56730406-56730245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
35-199
               

               
Cow position:
               
chr13:34142779-34142615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
103, 6
               

               
Conread position:
               
35-212
               

               
Cow position:
               
chr13:46732347-46732174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
35-218
               

               
Cow position:
               
chr13:34186805-34186626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
102, 6
               

               
Conread position:
               
35-270
               

               
Cow position:
               
chr13:34767407-34767175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
172, 46
               

               
Conread position:
               
35-431
               

               
Cow position:
               
chr13:34937027-34937444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 6
               

               
Conread position:
               
40-198
               

               
Cow position:
               
chr13:34693047-34693207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
53, 41
               

               
Conread position:
               
40-198
               

               
Cow position:
               
chr13:62327700-62327540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
94, 41
               

               
Conread position:
               
41-169
               

               
Cow position:
               
chr13:47230102-47229974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-178
               

               
Cow position:
               
chr13:1593270-1593134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
95, 49
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr13:676761-676904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr13:2388933-2388790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr13:9044386-9044528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr13:17308360-17308503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr13:32544944-32545087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr13:32737937-32737794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr13:32986171-32986029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr13:35757126-35757269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr13:49973569-49973712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr13:50109347-50109490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr13:60466222-60466365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-195
               

               
Cow position:
               
chr13:31832485-31832636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-198
               

               
Cow position:
               
chr13:31612450-31612294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 41
               

               
Conread position:
               
41-198
               

               
Cow position:
               
chr13:34042484-34042327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-199
               

               
Cow position:
               
chr13:15520630-15520472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
41-200
               

               
Cow position:
               
chr13:21840309-21840147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
93, 40
               

               
Conread position:
               
41-204
               

               
Cow position:
               
chr13:3058226-3058059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr13:4872962-4873141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr13:13324634-13324817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
92, 40
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr13:34911493-34911315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
95, 42
               

               
Conread position:
               
41-238
               

               
Cow position:
               
chr13:4940973-4941170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-239
               

               
Cow position:
               
chr13:34868628-34868825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
43-171
               

               
Cow position:
               
chr13:6668236-6668108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
93, 38
               

               
Conread position:
               
47-184
               

               
Cow position:
               
chr13:15924493-15924356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
51-199
               

               
Cow position:
               
chr13:31734190-31734038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
85, 30
               

               
Conread position:
               
65-432
               

               
Cow position:
               
chr13:15451647-15451277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 16
               

               
Conread position:
               
66-212
               

               
Cow position:
               
chr13:11799852-11799708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 17
               

               
Conread position:
               
66-218
               

               
Cow position:
               
chr13:35030462-35030614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
70, 15
               

               
Conread position:
               
80-198
               

               
Cow position:
               
chr13:33927664-33927545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
33-184
               

               
Cow position:
               
chr14:7472128-7472272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
103, 8
               

               
Conread position:
               
33-198
               

               
Cow position:
               
chr14:41085033-41084861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
14, 49
               

               
Conread position:
               
33-218
               

               
Cow position:
               
chr14:38532539-38532352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
102, 48
               

               
Conread position:
               
34-213
               

               
Cow position:
               
chr14:46464828-46465007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
102, 7
               

               
Conread position:
               
35-178
               

               
Cow position:
               
chr14:13479978-13479836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-192
               

               
Cow position:
               
chr14:42152079-42152236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
101, 10
               

               
Conread position:
               
35-192
               

               
Cow position:
               
chr14:44422310-44422466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
101, 10
               

               
Conread position:
               
35-194
               

               
Cow position:
               
chr14:44130671-44130827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-195
               

               
Cow position:
               
chr14:45850978-45851137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
101, 17
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr14:5201325-5201163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr14:7830784-7830622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr14:13660232-13660068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr14:22242637-22242799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr14:23690473-23690311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
101, 10
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr14:45565084-45565246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr14:45712230-45712073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr14:45767758-45767920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
101, 10
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr14:47624316-47624471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
35-199
               

               
Cow position:
               
chr14:44855670-44855508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-218
               

               
Cow position:
               
chr14:44226153-44226335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
100, 8
               

               
Conread position:
               
35-393
               

               
Cow position:
               
chr14:40339438-40339797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
40-198
               

               
Cow position:
               
chr14:45771017-45770861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
97, 41
               

               
Conread position:
               
40-217
               

               
Cow position:
               
chr14:44551642-44551821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
95, 41
               

               
Conread position:
               
41-171
               

               
Cow position:
               
chr14:5511583-5511713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-178
               

               
Cow position:
               
chr14:17685157-17685295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
88, 40
               

               
Conread position:
               
41-178
               

               
Cow position:
               
chr14:19328507-19328370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-178
               

               
Cow position:
               
chr14:22031926-22031789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
41-178
               

               
Cow position:
               
chr14:44287489-44287352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr14:750331-750474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
93, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr14:2284100-2284243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
98, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr14:5528823-5528966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr14:9045327-9045470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr14:13778716-13778859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr14:20782217-20782360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr14:28994093-28993950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr14:45029362-45029220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr14:45672283-45672141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
95, 38
               

               
Conread position:
               
41-191
               

               
Cow position:
               
chr14:13621386-13621235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
41-197
               

               
Cow position:
               
chr14:16273534-16273380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
95, 42
               

               
Conread position:
               
41-197
               

               
Cow position:
               
chr14:23901039-23900883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
41-198
               

               
Cow position:
               
chr14:19619981-19620138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-198
               

               
Cow position:
               
chr14:30596623-30596466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
33, 41
               

               
Conread position:
               
41-198
               

               
Cow position:
               
chr14:36968016-36968173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-198
               

               
Cow position:
               
chr14:37223663-37223819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
41-198
               

               
Cow position:
               
chr14:45833915-45834074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
95, 39
               

               
Conread position:
               
41-198
               

               
Cow position:
               
chr14:45917179-45917336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-199
               

               
Cow position:
               
chr14:23257120-23257282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-199
               

               
Cow position:
               
chr14:29048142-29047980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-212
               

               
Cow position:
               
chr14:35928940-35929105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
41-217
               

               
Cow position:
               
chr14:17001293-17001122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr14:17491695-17491512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr14:30585190-30585008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr14:33394015-33393835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr14:41407582-41407754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-223
               

               
Cow position:
               
chr14:40169941-40169764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
94, 40
               

               
Conread position:
               
41-238
               

               
Cow position:
               
chr14:15276819-15276622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-243
               

               
Cow position:
               
chr14:45160858-45161059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
96, 43
               

               
Conread position:
               
41-270
               

               
Cow position:
               
chr14:37414125-37413896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
41-278
               

               
Cow position:
               
chr14:12608943-12609189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
108, 40
               

               
Conread position:
               
41-283
               

               
Cow position:
               
chr14:33675572-33675826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
7, 41
               

               
Conread position:
               
41-393
               

               
Cow position:
               
chr14:45303603-45303244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
41-426
               

               
Cow position:
               
chr14:35387388-35386998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 42
               

               
Conread position:
               
43-198
               

               
Cow position:
               
chr14:44685806-44685961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
93, 38
               

               
Conread position:
               
43-278
               

               
Cow position:
               
chr14:22019156-22019398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
174, 38
               

               
Conread position:
               
44-184
               

               
Cow position:
               
chr14:11154401-11154262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
93, 37
               

               
Conread position:
               
44-212
               

               
Cow position:
               
chr14:13302794-13302960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
92, 37
               

               
Conread position:
               
46-199
               

               
Cow position:
               
chr14:50134840-50134994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
90, 35
               

               
Conread position:
               
47-184
               

               
Cow position:
               
chr14:12743301-12743164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
47-184
               

               
Cow position:
               
chr14:13864315-13864178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
47-197
               

               
Cow position:
               
chr14:16919923-16919773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
47-218
               

               
Cow position:
               
chr14:50110333-50110506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
89, 33
               

               
Conread position:
               
47-243
               

               
Cow position:
               
chr14:44377203-44377403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
57, 37
               

               
Conread position:
               
52-198
               

               
Cow position:
               
chr14:45205850-45205995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
85, 29
               

               
Conread position:
               
60-218
               

               
Cow position:
               
chr14:38146355-38146513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
80, 21
               

               
Conread position:
               
62-218
               

               
Cow position:
               
chr14:13273029-13273187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
72, 19
               

               
Conread position:
               
64-430
               

               
Cow position:
               
chr14:46084401-46084778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 17
               

               
Conread position:
               
67-184
               

               
Cow position:
               
chr14:43557223-43557340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
69, 14
               

               
Conread position:
               
67-185
               

               
Cow position:
               
chr14:45080833-45080950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
69, 14
               

               
Conread position:
               
250-435
               

               
Cow position:
               
chr14:44377459-44377645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
145, 75
               

               
Conread position:
               
276-432
               

               
Cow position:
               
chr14:17764784-17764630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
119, 36
               

               
Conread position:
               
13-219
               

               
Cow position:
               
chr15:7934070-7934276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
19, 41
               

               
Conread position:
               
26-184
               

               
Cow position:
               
chr15:15347371-15347214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
110, 15
               

               
Conread position:
               
32-198
               

               
Cow position:
               
chr15:21961262-21961427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
105, 9
               

               
Conread position:
               
32-212
               

               
Cow position:
               
chr15:16542424-16542600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
33-178
               

               
Cow position:
               
chr15:42936468-42936613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
103, 48
               

               
Conread position:
               
33-185
               

               
Cow position:
               
chr15:3037758-3037605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
69, 8
               

               
Conread position:
               
33-246
               

               
Cow position:
               
chr15:51672103-51672328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
103, 10
               

               
Conread position:
               
33-432
               

               
Cow position:
               
chr15:369926-369525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 8
               

               
Conread position:
               
33-432
               

               
Cow position:
               
chr15:35648475-35648079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 8
               

               
Conread position:
               
35-159
               

               
Cow position:
               
chr15:35735213-35735337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-173
               

               
Cow position:
               
chr15:6554098-6553961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
102, 46
               

               
Conread position:
               
35-181
               

               
Cow position:
               
chr15:41365938-41366077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
35-184
               

               
Cow position:
               
chr15:4678234-4678382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
101, 46
               

               
Conread position:
               
35-185
               

               
Cow position:
               
chr15:4795436-4795583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-192
               

               
Cow position:
               
chr15:6472160-6472003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
35, 8
               

               
Conread position:
               
35-197
               

               
Cow position:
               
chr15:4671186-4671347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
96, 10
               

               
Conread position:
               
35-197
               

               
Cow position:
               
chr15:7234058-7234221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
94, 48
               

               
Conread position:
               
35-197
               

               
Cow position:
               
chr15:25789211-25789051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr15:690546-690709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
102, 46
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr15:6078497-6078660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
101, 49
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr15:6277504-6277340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
13, 47
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr15:6370021-6369860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr15:7522735-7522574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
102, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr15:7921884-7921723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr15:10787371-10787209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr15:17271639-17271475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
102, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr15:23157074-23156923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
36, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr15:35748051-35748213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-198
               

               
Cow position:
               
chr15:36648665-36648827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-199
               

               
Cow position:
               
chr15:4169941-4169778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
35-217
               

               
Cow position:
               
chr15:32494629-32494446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
102, 46
               

               
Conread position:
               
35-218
               

               
Cow position:
               
chr15:8408310-8408494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
12, 63
               

               
Conread position:
               
35-219
               

               
Cow position:
               
chr15:7894472-7894289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
102, 6
               

               
Conread position:
               
35-238
               

               
Cow position:
               
chr15:12421408-12421207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
102, 10
               

               
Conread position:
               
36-278
               

               
Cow position:
               
chr15:1237076-1237328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
61, 45
               

               
Conread position:
               
37-275
               

               
Cow position:
               
chr15:324695-324943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
84, 44
               

               
Conread position:
               
39-217
               

               
Cow position:
               
chr15:316107-315919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
40-191
               

               
Cow position:
               
chr15:8000470-8000320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
96, 41
               

               
Conread position:
               
40-198
               

               
Cow position:
               
chr15:21623460-21623615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
96, 29
               

               
Conread position:
               
41-133
               

               
Cow position:
               
chr15:22920888-22920979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
93
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
41-159
               

               
Cow position:
               
chr15:51800487-51800605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-171
               

               
Cow position:
               
chr15:19738291-19738161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-171
               

               
Cow position:
               
chr15:35753835-35753706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-178
               

               
Cow position:
               
chr15:17039491-17039358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
41-178
               

               
Cow position:
               
chr15:18333065-18332929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
95, 27
               

               
Conread position:
               
41-178
               

               
Cow position:
               
chr15:44069685-44069822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-183
               

               
Cow position:
               
chr15:29009602-29009744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr15:444372-444514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr15:1519387-1519244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr15:1772261-1772404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
41-184
               

               
Cow position:
               
chr15:2647893-2647750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
95, 40
               
41-184UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr15:4385030-4385173 (view  custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
96, 40
               
41-184UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr15:4812083-4812224 (view  custom track)

               
               
               
Alignm length:
145

               
               
               
Alignm identity:
113

               
               
               
Alignm E-value:
1e-25

               
               
               
Alignm gaps (pig, cow):
95, 40
41-184UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr15:4921906-4922056 (view  custom track)

               
               
               
Alignm length:
152

               
               
               
Alignm identity:
116

               
               
               
Alignm E-value:
1e-22

               
               
               
Alignm gaps (pig, cow):
27, 47

               
               
               Conread position:41-184
               
               
               Cow position:chr15:7260387-7260531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):22, 39

               
               
               Conread position:41-184
               
               
               Cow position:chr15:7837006-7837149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr15:17080438-17080296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:41-184
               
               
               Cow position:chr15:20749178-20749321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr15:24294854-24294997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr15:31358648-31358791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-184
               
               
               Cow position:chr15:32710456-32710599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr15:42320658-42320515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr15:50124176-50124036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-185
               
               
               Cow position:chr15:8099249-8099394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):88, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr15:4143054-4142899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr15:36970687-36970843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr15:2076410-2076567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-198
               
               
               Cow position:chr15:4649589-4649746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-198
               
               
               Cow position:chr15:4681995-4682152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:41-198
               
               
               Cow position:chr15:6593182-6593025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr15:10888372-10888524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):95, 31

               
               
               Conread position:41-198
               
               
               Cow position:chr15:18576476-18576633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr15:1782017-1782179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr15:2011845-2012006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):93, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr15:28490378-28490216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-205
               
               
               Cow position:chr15:4961394-4961554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):99, 40

               
               
               Conread position:41-210
               
               
               Cow position:chr15:4733621-4733790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-212
               
               
               Cow position:chr15:24715987-24716152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:41-217
               
               
               Cow position:chr15:12614830-12615001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):27, 15

               
               
               Conread position:41-218
               
               
               Cow position:chr15:56250-56432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr15:3010088-3009905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr15:36626908-36626731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr15:40105227-40105401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr15:50146841-50147024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-219
               
               
               Cow position:chr15:6156191-6156011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-219
               
               
               Cow position:chr15:8750189-8750368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):97, 40

               
               
               Conread position:41-219
               
               
               Cow position:chr15:37392259-37392434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):99, 40

               
               
               Conread position:41-224
               
               
               Cow position:chr15:4196226-4196414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-238
               
               
               Cow position:chr15:51216351-51216547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-243
               
               
               Cow position:chr15:17292201-17292402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-428
               
               
               Cow position:chr15:24793810-24794192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:41-432
               
               
               Cow position:chr15:36642377-36642771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:43-198
               
               
               Cow position:chr15:7544646-7544801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):93, 42

               
               
               Conread position:43-224
               
               
               Cow position:chr15:32733025-32732847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):161, 38

               
               
               Conread position:44-184
               
               
               Cow position:chr15:21665981-21665841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:44-198
               
               
               Cow position:chr15:4764971-4765124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:47-183
               
               
               Cow position:chr15:1763859-1763994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-197
               
               
               Cow position:chr15:1882736-1882587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:47-199
               
               
               Cow position:chr15:18268218-18268062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-252
               
               
               Cow position:chr15:1834692-1834484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):89, 30

               
               
               Conread position:49-184
               
               
               Cow position:chr15:3888650-3888785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):87, 32

               
               
               Conread position:49-305
               
               
               Cow position:chr15:15265891-15265624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):56, 32

               
               
               Conread position:51-178
               
               
               Cow position:chr15:42490976-42491103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):85, 30

               
               
               Conread position:51-179
               
               
               Cow position:chr15:2924658-2924786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):84, 30

               
               
               Conread position:51-218
               
               
               Cow position:chr15:5068623-5068790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):85, 27

               
               
               Conread position:62-184
               
               
               Cow position:chr15:2589687-2589565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):74, 19

               
               
               Conread position:62-184
               
               
               Cow position:chr15:2592048-2591926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):74, 19

               
               
               Conread position:62-192
               
               
               Cow position:chr15:53338807-53338937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):75, 19

               
               
               Conread position:81-218
               
               
               Cow position:chr15:5544594-5544735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):55, 127

               
               
               Conread position:83-198
               
               
               Cow position:chr15:6650196-6650080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:12-184
               
               
               Cow position:chr16:2727899-2727730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):124, 16

               
               
               Conread position:15-184
               
               
               Cow position:chr16:5483711-5483881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):21, 66

               
               
               Conread position:30-184
               
               
               Cow position:chr16:43897864-43897713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:31-212
               
               
               Cow position:chr16:18499944-18499767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:33-183
               
               
               Cow position:chr16:36361959-36361805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):11, 51

               
               
               Conread position:33-198
               
               
               Cow position:chr16:10808556-10808722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):8, 49

               
               
               Conread position:34-215
               
               
               Cow position:chr16:51685845-51686022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:35-173
               
               
               Cow position:chr16:27734393-27734255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-184
               
               
               Cow position:chr16:26663158-26663307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-192
               
               
               Cow position:chr16:11052571-11052726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:35-198
               
               
               Cow position:chr16:7906029-7906191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):101, 8

               
               
               Conread position:35-198
               
               
               Cow position:chr16:15492118-15492281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-198
               
               
               Cow position:chr16:20254901-20254739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr16:34529730-34529893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):101, 45

               
               
               Conread position:35-210
               
               
               Cow position:chr16:30047901-30048078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):102, 22

               
               
               Conread position:35-375
               
               
               Cow position:chr16:25156813-25156465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 25

               
               
               Conread position:35-432
               
               
               Cow position:chr16:42740013-42739610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 10

               
               
               Conread position:40-198
               
               
               Cow position:chr16:6549110-6548952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:40-198
               
               
               Cow position:chr16:19713472-19713317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):97, 40

               
               
               Conread position:41-156
               
               
               Cow position:chr16:42050972-42050857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):95, 43

               
               
               Conread position:41-171
               
               
               Cow position:chr16:14666414-14666284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-178
               
               
               Cow position:chr16:9777500-9777637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-178
               
               
               Cow position:chr16:12538509-12538373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-178
               
               
               Cow position:chr16:15184218-15184355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-178
               
               
               Cow position:chr16:15566165-15566296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):95, 19

               
               
               Conread position:41-180
               
               
               Cow position:chr16:5918898-5919037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr16:1568039-1567896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr16:2239317-2239182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:41-184
               
               
               Cow position:chr16:8816689-8816546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr16:10204015-10203872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr16:23253092-23252949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr16:25341380-25341523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr16:28471686-28471544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-196
               
               
               Cow position:chr16:6943047-6943202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr16:53045769-53045925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):95, 46

               
               
               Conread position:41-198
               
               
               Cow position:chr16:2483727-2483570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr16:23982726-23982882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr16:39821047-39821202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:41-199
               
               
               Cow position:chr16:5661265-5661427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr16:25188058-25188217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):95, 26

               
               
               Conread position:41-204
               
               
               Cow position:chr16:31832046-31832213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:41-214
               
               
               Cow position:chr16:31375865-31375694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 19

               
               
               Conread position:41-216
               
               
               Cow position:chr16:32155-32334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:41-218
               
               
               Cow position:chr16:335705-335877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):10, 41

               
               
               Conread position:41-218
               
               
               Cow position:chr16:31592489-31592313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):171, 40

               
               
               Conread position:41-226
               
               
               Cow position:chr16:28170948-28170758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-238
               
               
               Cow position:chr16:2411554-2411356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:41-303
               
               
               Cow position:chr16:49257168-49256896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 40

               
               
               Conread position:41-421
               
               
               Cow position:chr16:49235735-49235343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 37

               
               
               Conread position:41-434
               
               
               Cow position:chr16:29033131-29033532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 40

               
               
               Conread position:43-278
               
               
               Cow position:chr16:32935592-32935832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:47-171
               
               
               Cow position:chr16:40296757-40296633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-177
               
               
               Cow position:chr16:10437664-10437795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-184
               
               
               Cow position:chr16:29046443-29046580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-198
               
               
               Cow position:chr16:25085042-25085193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):89, 33

               
               
               Conread position:47-205
               
               
               Cow position:chr16:836450-836608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-278
               
               
               Cow position:chr16:9929961-9930197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):140, 31

               
               
               Conread position:48-191
               
               
               Cow position:chr16:36282819-36282963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):89, 36

               
               
               Conread position:48-214
               
               
               Cow position:chr16:52815065-52814903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):89, 33

               
               
               Conread position:51-184
               
               
               Cow position:chr16:407606-407473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):85, 30

               
               
               Conread position:62-319
               
               
               Cow position:chr16:16273398-16273132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 19

               
               
               Conread position:63-193
               
               
               Cow position:chr16:56551557-56551688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):73, 18

               
               
               Conread position:64-174
               
               
               Cow position:chr16:4302890-4302780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 17

               
               
               Conread position:65-195
               
               
               Cow position:chr16:29675939-29675810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):72, 9

               
               
               Conread position:70-200
               
               
               Cow position:chr16:25153167-25153297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):68, 11

               
               
               Conread position:81-432
               
               
               Cow position:chr16:25257058-25257420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 253

               
               
               Conread position:148-418
               
               
               Cow position:chr16:42050603-42050341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):55, 103

               
               
               Conread position:258-410
               
               
               Cow position:chr16:49234830-49234678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):137, 6

               
               
               Conread position:33-171
               
               
               Cow position:chr17:15323232-15323368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):103, 8

               
               
               Conread position:33-199
               
               
               Cow position:chr17:2287372-2287537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):103, 8

               
               
               Conread position:35-185
               
               
               Cow position:chr17:20183243-20183097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:35-195
               
               
               Cow position:chr17:44852944-44852786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr17:22132217-22132378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):101, 34

               
               
               Conread position:35-198
               
               
               Cow position:chr17:23857046-23856884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr17:35592201-35592364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):94, 6

               
               
               Conread position:35-205
               
               
               Cow position:chr17:15850383-15850556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):94, 46

               
               
               Conread position:35-212
               
               
               Cow position:chr17:20087756-20087582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):152, 6

               
               
               Conread position:35-218
               
               
               Cow position:chr17:2173865-2174046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):101, 45

               
               
               Conread position:35-277
               
               
               Cow position:chr17:42264491-42264738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):51, 6

               
               
               Conread position:36-212
               
               
               Cow position:chr17:3709222-3709047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):100, 45

               
               
               Conread position:40-198
               
               
               Cow position:chr17:1283713-1283555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:40-198
               
               
               Cow position:chr17:18026765-18026607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:40-198
               
               
               Cow position:chr17:22429501-22429338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 29

               
               
               Conread position:41-143
               
               
               Cow position:chr17:26205814-26205712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-156
               
               
               Cow position:chr17:249932-250047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:41-168
               
               
               Cow position:chr17:2556116-2556242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:41-181
               
               
               Cow position:chr17:9653463-9653323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-182
               
               
               Cow position:chr17:31768046-31767905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-183
               
               
               Cow position:chr17:43988526-43988668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr17:228315-228172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr17:1382821-1382678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr17:3642843-3642700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr17:15435784-15435927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr17:40804809-40804953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):97, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr17:43952570-43952427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):95, 43

               
               
               Conread position:41-196
               
               
               Cow position:chr17:15156970-15156816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):95, 7

               
               
               Conread position:41-197
               
               
               Cow position:chr17:2248591-2248435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr17:6089168-6089012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr17:22557615-22557771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 41

               
               
               Conread position:41-197
               
               
               Cow position:chr17:24633947-24634103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-198
               
               
               Cow position:chr17:27345792-27345948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr17:181356-181518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:41-199
               
               
               Cow position:chr17:20665733-20665571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-215
               
               
               Cow position:chr17:16890117-16890290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):93, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr17:8209099-8209282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr17:13856776-13856599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr17:14217030-14216850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-224
               
               
               Cow position:chr17:2262099-2262284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-224
               
               
               Cow position:chr17:15143374-15143192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-238
               
               
               Cow position:chr17:11087731-11087535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-238
               
               
               Cow position:chr17:14894146-14894343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-250
               
               
               Cow position:chr17:6259838-6260046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-278
               
               
               Cow position:chr17:4081625-4081876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):146, 40

               
               
               Conread position:41-336
               
               
               Cow position:chr17:15371042-15371345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 105

               
               
               Conread position:41-447
               
               
               Cow position:chr17:36987678-36987290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:42-184
               
               
               Cow position:chr17:34156122-34156264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):94, 39

               
               
               Conread position:43-218
               
               
               Cow position:chr17:23324459-23324278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:44-184
               
               
               Cow position:chr17:19269370-19269230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):93, 37

               
               
               Conread position:44-184
               
               
               Cow position:chr17:25737659-25737799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:44-223
               
               
               Cow position:chr17:13929664-13929846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:47-198
               
               
               Cow position:chr17:4060099-4060249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-218
               
               
               Cow position:chr17:1658569-1658396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 91

               
               
               Conread position:47-218
               
               
               Cow position:chr17:1880093-1880267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:48-198
               
               
               Cow position:chr17:18185532-18185385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):89, 33

               
               
               Conread position:49-198
               
               
               Cow position:chr17:14041044-14040896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):88, 37

               
               
               Conread position:51-277
               
               
               Cow position:chr17:4295349-4295581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):84, 16

               
               
               Conread position:52-195
               
               
               Cow position:chr17:602434-602291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):84, 29

               
               
               Conread position:57-214
               
               
               Cow position:chr17:152463-152310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):79, 24

               
               
               Conread position:60-168
               
               
               Cow position:chr17:602695-602803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):76, 21

               
               
               Conread position:60-198
               
               
               Cow position:chr17:1946982-1947119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):76, 21

               
               
               Conread position:62-430
               
               
               Cow position:chr17:14325493-14325121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 19

               
               
               Conread position:92-278
               
               
               Cow position:chr17:20401704-20401898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 186

               
               
               Conread position:35-172
               
               
               Cow position:chr18:114587-114722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:35-178
               
               
               Cow position:chr18:37505260-37505401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:35-184
               
               
               Cow position:chr18:28973708-28973559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-184
               
               
               Cow position:chr18:51481034-51481183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):101, 45

               
               
               Conread position:35-191
               
               
               Cow position:chr18:33359061-33359217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:136
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-191
               
               
               Cow position:chr18:43146731-43146574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):102, 46

               
               
               Conread position:35-192
               
               
               Cow position:chr18:2019490-2019335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-192
               
               
               Cow position:chr18:35335675-35335831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr18:19539384-19539227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:35-198
               
               
               Cow position:chr18:23944179-23944015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:141
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr18:32293962-32294116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:35-198
               
               
               Cow position:chr18:33269021-33269183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr18:39748774-39748935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr18:47719388-47719226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr18:48222075-48222236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:139
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr18:53786035-53786195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:35-199
               
               
               Cow position:chr18:51310781-51310942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-218
               
               
               Cow position:chr18:51258179-51258361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:37-184
               
               
               Cow position:chr18:24040536-24040388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):99, 44

               
               
               Conread position:37-220
               
               
               Cow position:chr18:16534175-16534360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):99, 47

               
               
               Conread position:40-198
               
               
               Cow position:chr18:17992221-17992063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:41-174
               
               
               Cow position:chr18:19352586-19352719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-178
               
               
               Cow position:chr18:14416177-14416313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-178
               
               
               Cow position:chr18:52651120-52651257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 45

               
               
               Conread position:41-184
               
               
               Cow position:chr18:16176413-16176274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:41-184
               
               
               Cow position:chr18:23797848-23797991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr18:36508533-36508676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr18:40478584-40478726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr18:41840624-41840481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr18:47742219-47742362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr18:22602688-22602844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr18:33953368-33953218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):97, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr18:51689825-51689981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr18:51341887-51342049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-213
               
               
               Cow position:chr18:55088724-55088552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-216
               
               
               Cow position:chr18:14130585-14130759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr18:11274905-11274722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr18:16078918-16079099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr18:51462877-51462695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-238
               
               
               Cow position:chr18:27987261-27987461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-278
               
               
               Cow position:chr18:29763571-29763812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):175, 40

               
               
               Conread position:41-286
               
               
               Cow position:chr18:2886820-2886564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 22

               
               
               Conread position:41-428
               
               
               Cow position:chr18:54171659-54171271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-504
               
               
               Cow position:chr18:56462702-56462234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:42-198
               
               
               Cow position:chr18:6869057-6868901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:134
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):94, 39

               
               
               Conread position:43-435
               
               
               Cow position:chr18:29237012-29237417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 9

               
               
               Conread position:44-184
               
               
               Cow position:chr18:27838112-27837973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):98, 39

               
               
               Conread position:44-184
               
               
               Cow position:chr18:54003729-54003864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:44-278
               
               
               Cow position:chr18:16843134-16842892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):91, 37

               
               
               Conread position:48-218
               
               
               Cow position:chr18:37599334-37599165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):87, 33

               
               
               Conread position:50-198
               
               
               Cow position:chr18:24700905-24700755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:53-192
               
               
               Cow position:chr18:33336075-33336214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):83, 28

               
               
               Conread position:62-214
               
               
               Cow position:chr18:51629663-51629809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:67-199
               
               
               Cow position:chr18:1521372-1521504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:68-198
               
               
               Cow position:chr18:54044494-54044365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):69, 13

               
               
               Conread position:6-184
               
               
               Cow position:chr19:43143881-43144064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):16, 80

               
               
               Conread position:11-198
               
               
               Cow position:chr19:341397-341583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):125, 16

               
               
               Conread position:33-432
               
               
               Cow position:chr19:377705-377309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:284
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):104, 27

               
               
               Conread position:35-178
               
               
               Cow position:chr19:32665730-32665867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-184
               
               
               Cow position:chr19:5729028-5729177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-197
               
               
               Cow position:chr19:1032275-1032436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr19:416861-417022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:35-198
               
               
               Cow position:chr19:28376683-28376848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):64, 46

               
               
               Conread position:35-217
               
               
               Cow position:chr19:10672107-10671924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:40-197
               
               
               Cow position:chr19:40817499-40817341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):96, 39

               
               
               Conread position:41-154
               
               
               Cow position:chr19:32244889-32245002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-160
               
               
               Cow position:chr19:439256-439137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:41-171
               
               
               Cow position:chr19:893410-893280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-177
               
               
               Cow position:chr19:2274173-2274036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-178
               
               
               Cow position:chr19:7488518-7488655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-183
               
               
               Cow position:chr19:439452-439310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:41-183
               
               
               Cow position:chr19:20104918-20105060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr19:38100-38243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr19:170542-170399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr19:687270-687411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):86, 39

               
               
               Conread position:41-184
               
               
               Cow position:chr19:32211868-32211725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr19:33873631-33873774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr19:33941815-33941958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:41-197
               
               
               Cow position:chr19:40852233-40852077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr19:772804-772964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr19:7342273-7342435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):92, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr19:52151625-52151442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-219
               
               
               Cow position:chr19:42249009-42249186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-238
               
               
               Cow position:chr19:39390713-39390910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-259
               
               
               Cow position:chr19:6553807-6554026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 32

               
               
               Conread position:41-278
               
               
               Cow position:chr19:42648907-42648664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):175, 40

               
               
               Conread position:41-290
               
               
               Cow position:chr19:35376992-35377242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 43

               
               
               Conread position:44-193
               
               
               Cow position:chr19:76061-75911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:46-198
               
               
               Cow position:chr19:29209807-29209959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):90, 35

               
               
               Conread position:47-178
               
               
               Cow position:chr19:28581448-28581317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-191
               
               
               Cow position:chr19:172422-172566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):89, 33

               
               
               Conread position:47-198
               
               
               Cow position:chr19:204172-204323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-198
               
               
               Cow position:chr19:4532418-4532276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:51-433
               
               
               Cow position:chr19:163215-162823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:272
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):85, 32

               
               
               Conread position:57-432
               
               
               Cow position:chr19:42906-43289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 24

               
               
               Conread position:61-398
               
               
               Cow position:chr19:27052623-27052289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 20

               
               
               Conread position:65-319
               
               
               Cow position:chr19:32223220-32222955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:75-197
               
               
               Cow position:chr19:5208411-5208533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):61, 6

               
               
               Conread position:135-432
               
               
               Cow position:chr19:137057-136752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):82, 53

               
               
               Conread position:168-433
               
               
               Cow position:chr19:44532444-44532725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):49, 168

               
               
               Conread position:168-433
               
               
               Cow position:chr19:47610415-47610135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):48, 168

               
               
               Conread position:233-434
               
               
               Cow position:chr19:3138002-3138211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):149, 92

               
               
               Conread position:33-196
               
               
               Cow position:chr2:78762112-78762272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):104, 48

               
               
               Conread position:34-198
               
               
               Cow position:chr2:11159486-11159323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):102, 7

               
               
               Conread position:35-135
               
               
               Cow position:chr2:52656107-52656206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:35-183
               
               
               Cow position:chr2:26868909-26869056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:35-185
               
               
               Cow position:chr2:52152221-52152073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:35-191
               
               
               Cow position:chr2:11969127-11968971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-191
               
               
               Cow position:chr2:44346358-44346513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-192
               
               
               Cow position:chr2:5481025-5480871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-194
               
               
               Cow position:chr2:5485611-5485452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:35-194
               
               
               Cow position:chr2:78741772-78741933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):58, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr2:422708-422872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):81, 45

               
               
               Conread position:35-198
               
               
               Cow position:chr2:2101828-2101666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr2:6772529-6772368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr2:10711794-10711632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr2:10843709-10843546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:138
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-198
               
               
               Cow position:chr2:41172320-41172484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr2:44106467-44106305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr2:53473515-53473357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr2:72922189-72922027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr2:82167251-82167413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-219
               
               
               Cow position:chr2:16076653-16076468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-224
               
               
               Cow position:chr2:7211341-7211528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):100, 46

               
               
               Conread position:35-384
               
               
               Cow position:chr2:36054010-36053659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 6

               
               
               Conread position:35-421
               
               
               Cow position:chr2:1673026-1672638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 46

               
               
               Conread position:35-432
               
               
               Cow position:chr2:14822142-14822548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:36-197
               
               
               Cow position:chr2:2088530-2088368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):100, 46

               
               
               Conread position:38-217
               
               
               Cow position:chr2:49604360-49604538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):98, 46

               
               
               Conread position:39-224
               
               
               Cow position:chr2:74391470-74391273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):58, 42

               
               
               Conread position:40-191
               
               
               Cow position:chr2:2363830-2363982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:40-196
               
               
               Cow position:chr2:80516717-80516862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 42

               
               
               Conread position:40-198
               
               
               Cow position:chr2:46946314-46946471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:40-432
               
               
               Cow position:chr2:34565283-34564891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 41

               
               
               Conread position:41-176
               
               
               Cow position:chr2:283045-282910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-183
               
               
               Cow position:chr2:51990883-51990741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr2:212572-212431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr2:2413149-2413006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr2:10186586-10186443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr2:16899894-16900039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):23, 42

               
               
               Conread position:41-184
               
               
               Cow position:chr2:42671740-42671598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):95, 15

               
               
               Conread position:41-184
               
               
               Cow position:chr2:47810658-47810803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):61, 39

               
               
               Conread position:41-184
               
               
               Cow position:chr2:50983581-50983439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr2:67419652-67419509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-185
               
               
               Cow position:chr2:4404700-4404557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-191
               
               
               Cow position:chr2:32654982-32655134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-192
               
               
               Cow position:chr2:10611979-10611828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-196
               
               
               Cow position:chr2:42333644-42333488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 45

               
               
               Conread position:41-197
               
               
               Cow position:chr2:2184609-2184453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr2:3324917-3324761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr2:5474163-5474319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr2:26921343-26921500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-197
               
               
               Cow position:chr2:49471894-49472050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr2:49590048-49590204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-197
               
               
               Cow position:chr2:52062314-52062470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr2:57142039-57141883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr2:80955989-80955833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr2:13046058-13045902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr2:19009880-19010036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):88, 28

               
               
               Conread position:41-198
               
               
               Cow position:chr2:36980022-36980179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr2:81256452-81256609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr2:44090947-44091110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr2:175881-175703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):97, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr2:9907560-9907743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr2:25030828-25030646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):95, 17

               
               
               Conread position:41-218
               
               
               Cow position:chr2:39421225-39421409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):86, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr2:41656730-41656912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):145, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr2:41686163-41686344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:150
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr2:44935440-44935263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr2:47038765-47038584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr2:52616120-52616300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr2:54737155-54737336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr2:63292919-63292743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):88, 40

               
               
               Conread position:41-233
               
               
               Cow position:chr2:768740-768547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):93, 37

               
               
               Conread position:41-238
               
               
               Cow position:chr2:10269013-10268816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):95, 44

               
               
               Conread position:41-238
               
               
               Cow position:chr2:28792898-28793096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):92, 40

               
               
               Conread position:41-262
               
               
               Cow position:chr2:51305083-51304862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):153, 40

               
               
               Conread position:41-280
               
               
               Cow position:chr2:7901930-7902174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):95, 28

               
               
               Conread position:41-369
               
               
               Cow position:chr2:36031087-36030757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-435
               
               
               Cow position:chr2:15577914-15577519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 11

               
               
               Conread position:42-432
               
               
               Cow position:chr2:28621179-28620799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:42-434
               
               
               Cow position:chr2:39621937-39622345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:43-184
               
               
               Cow position:chr2:57334846-57334986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:43-192
               
               
               Cow position:chr2:59414031-59413882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:43-194
               
               
               Cow position:chr2:2380760-2380907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:44-199
               
               
               Cow position:chr2:45213639-45213480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:44-217
               
               
               Cow position:chr2:53329396-53329568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:44-218
               
               
               Cow position:chr2:28616556-28616384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:44-219
               
               
               Cow position:chr2:6960396-6960574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 10

               
               
               Conread position:45-259
               
               
               Cow position:chr2:50321934-50322149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:46-423
               
               
               Cow position:chr2:16288878-16289262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 31

               
               
               Conread position:47-170
               
               
               Cow position:chr2:65938796-65938674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):90, 20

               
               
               Conread position:47-184
               
               
               Cow position:chr2:24922052-24922190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):89, 43

               
               
               Conread position:47-198
               
               
               Cow position:chr2:22077444-22077591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:47-199
               
               
               Cow position:chr2:5905208-5905058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):89, 33

               
               
               Conread position:47-238
               
               
               Cow position:chr2:4926523-4926332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-432
               
               
               Cow position:chr2:2356812-2356423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 34

               
               
               Conread position:48-212
               
               
               Cow position:chr2:75676265-75676098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):72, 33

               
               
               Conread position:48-434
               
               
               Cow position:chr2:28643477-28643088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 33

               
               
               Conread position:51-184
               
               
               Cow position:chr2:28650574-28650441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):85, 30

               
               
               Conread position:51-278
               
               
               Cow position:chr2:32389447-32389680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):166, 28

               
               
               Conread position:54-335
               
               
               Cow position:chr2:41149652-41149941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):145, 25

               
               
               Conread position:60-243
               
               
               Cow position:chr2:85068893-85068713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):77, 24

               
               
               Conread position:62-197
               
               
               Cow position:chr2:5870685-5870551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 15

               
               
               Conread position:68-200
               
               
               Cow position:chr2:3837336-3837204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:71-198
               
               
               Cow position:chr2:1490299-1490172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:80-218
               
               
               Cow position:chr2:57588382-57588526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):54, 27

               
               
               Conread position:122-299
               
               
               Cow position:chr2:24393442-24393258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 137

               
               
               Conread position:214-432
               
               
               Cow position:chr2:5485456-5485242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):38, 59

               
               
               Conread position:235-385
               
               
               Cow position:chr2:28616191-28616043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):17, 11

               
               
               Conread position:33-205
               
               
               Cow position:chr20:12438606-12438435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):103, 8

               
               
               Conread position:35-184
               
               
               Cow position:chr20:13763060-13763209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-184
               
               
               Cow position:chr20:25850835-25850686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-185
               
               
               Cow position:chr20:24614691-24614841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):61, 6

               
               
               Conread position:35-191
               
               
               Cow position:chr20:8313283-8313127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:35-195
               
               
               Cow position:chr20:15947222-15947064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):101, 43

               
               
               Conread position:35-196
               
               
               Cow position:chr20:3033218-3033379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr20:3251977-3251816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr20:5484346-5484509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):98, 6

               
               
               Conread position:38-198
               
               
               Cow position:chr20:15064925-15065084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):98, 38

               
               
               Conread position:41-178
               
               
               Cow position:chr20:29948661-29948798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-183
               
               
               Cow position:chr20:21914489-21914631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):13, 41

               
               
               Conread position:41-184
               
               
               Cow position:chr20:5535099-5535242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr20:8004064-8003921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr20:23799048-23799190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-184
               
               
               Cow position:chr20:27869359-27869502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-191
               
               
               Cow position:chr20:7116307-7116157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr20:5560553-5560397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr20:3684326-3684168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:138
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-213
               
               
               Cow position:chr20:19438109-19438278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):145, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr20:822929-823112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr20:9953824-9953651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr20:10845960-10845781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr20:10856871-10856698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:41-218
               
               
               Cow position:chr20:21393755-21393934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-219
               
               
               Cow position:chr20:3270866-3271045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):90, 49

               
               
               Conread position:41-239
               
               
               Cow position:chr20:15292172-15292370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-267
               
               
               Cow position:chr20:13679896-13679660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:43-197
               
               
               Cow position:chr20:25961267-25961421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:47-170
               
               
               Cow position:chr20:28160939-28161061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):89, 23

               
               
               Conread position:47-184
               
               
               Cow position:chr20:28565428-28565291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-200
               
               
               Cow position:chr20:35104462-35104309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:48-183
               
               
               Cow position:chr20:35119739-35119873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:50-184
               
               
               Cow position:chr20:15097706-15097572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):86, 31

               
               
               Conread position:66-198
               
               
               Cow position:chr20:19495170-19495304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:67-184
               
               
               Cow position:chr20:23469478-23469361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:81-432
               
               
               Cow position:chr20:18315411-18315062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 233

               
               
               Conread position:251-434
               
               
               Cow position:chr20:8215554-8215739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):73, 148

               
               
               Conread position:21-427
               
               
               Cow position:chr21:9870008-9870414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 20

               
               
               Conread position:26-239
               
               
               Cow position:chr21:3779033-3779245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):110, 15

               
               
               Conread position:35-198
               
               
               Cow position:chr21:2529851-2529690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr21:3798096-3797933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:137
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):101, 48

               
               
               Conread position:35-198
               
               
               Cow position:chr21:4457102-4457264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):100, 10

               
               
               Conread position:35-198
               
               
               Cow position:chr21:35596644-35596804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:35-199
               
               
               Cow position:chr21:3615588-3615750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:35-218
               
               
               Cow position:chr21:2502166-2502350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):86, 25

               
               
               Conread position:35-224
               
               
               Cow position:chr21:2416503-2416682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):101, 19

               
               
               Conread position:35-408
               
               
               Cow position:chr21:30226295-30226666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:36-191
               
               
               Cow position:chr21:2716442-2716286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):100, 45

               
               
               Conread position:40-185
               
               
               Cow position:chr21:2788712-2788568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:40-198
               
               
               Cow position:chr21:13123726-13123568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:136
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:40-199
               
               
               Cow position:chr21:39425343-39425506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:40-432
               
               
               Cow position:chr21:2541132-2540733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 41

               
               
               Conread position:41-170
               
               
               Cow position:chr21:2883467-2883338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-171
               
               
               Cow position:chr21:10850361-10850490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):94, 39

               
               
               Conread position:41-178
               
               
               Cow position:chr21:31559375-31559238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-183
               
               
               Cow position:chr21:12055720-12055578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-183
               
               
               Cow position:chr21:27282666-27282808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-183
               
               
               Cow position:chr21:37045191-37045333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr21:1191444-1191587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr21:2674330-2674188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr21:6339847-6339990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr21:11453375-11453232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr21:30562083-30562226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-184
               
               
               Cow position:chr21:30599645-30599502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr21:2510932-2511088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr21:4090930-4091086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr21:26650322-26650478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-197
               
               
               Cow position:chr21:46915869-46916025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr21:146204-146360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr21:34293297-34293453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr21:40271396-40271238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):93, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr21:11505868-11506060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:41-218
               
               
               Cow position:chr21:18820147-18819970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-224
               
               
               Cow position:chr21:26638184-26637995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-270
               
               
               Cow position:chr21:21517407-21517646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):19, 42

               
               
               Conread position:41-396
               
               
               Cow position:chr21:23812156-23812519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 40

               
               
               Conread position:41-431
               
               
               Cow position:chr21:9891883-9892294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 118

               
               
               Conread position:41-434
               
               
               Cow position:chr21:359315-359718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 17

               
               
               Conread position:41-434
               
               
               Cow position:chr21:4183801-4184184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 36

               
               
               Conread position:43-198
               
               
               Cow position:chr21:1291908-1291753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):94, 38

               
               
               Conread position:44-170
               
               
               Cow position:chr21:33251790-33251916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):92, 49

               
               
               Conread position:44-178
               
               
               Cow position:chr21:48116385-48116519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):92, 46

               
               
               Conread position:44-210
               
               
               Cow position:chr21:4589707-4589541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:45-205
               
               
               Cow position:chr21:21914571-21914729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:47-157
               
               
               Cow position:chr21:47948396-47948505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):89, 31

               
               
               Conread position:47-198
               
               
               Cow position:chr21:34258703-34258551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:65-239
               
               
               Cow position:chr21:7267231-7267055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):121, 16

               
               
               Conread position:97-432
               
               
               Cow position:chr21:29105-29448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 235

               
               
               Conread position:32-184
               
               
               Cow position:chr22:36861430-36861279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):104, 9

               
               
               Conread position:33-218
               
               
               Cow position:chr22:1048503-1048685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:35-184
               
               
               Cow position:chr22:15313850-15313701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-184
               
               
               Cow position:chr22:39469420-39469272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-185
               
               
               Cow position:chr22:1319500-1319649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-191
               
               
               Cow position:chr22:117739-117583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:137
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr22:36736861-36737024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):62, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr22:38937980-38937818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:35-198
               
               
               Cow position:chr22:39882073-39881911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr22:42771557-42771720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):102, 48

               
               
               Conread position:35-199
               
               
               Cow position:chr22:36533640-36533475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-212
               
               
               Cow position:chr22:44352855-44352687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:35-218
               
               
               Cow position:chr22:1321696-1321872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:35-276
               
               
               Cow position:chr22:34598769-34599010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):154, 22

               
               
               Conread position:35-292
               
               
               Cow position:chr22:6503574-6503308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:35-397
               
               
               Cow position:chr22:8136101-8135737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 6

               
               
               Conread position:35-431
               
               
               Cow position:chr22:1283548-1283148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 46

               
               
               Conread position:35-432
               
               
               Cow position:chr22:41419591-41419193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-435
               
               
               Cow position:chr22:44609699-44610090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 6

               
               
               Conread position:36-198
               
               
               Cow position:chr22:15851432-15851584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:40-198
               
               
               Cow position:chr22:157800-157641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):89, 41

               
               
               Conread position:40-198
               
               
               Cow position:chr22:46547557-46547399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:40-218
               
               
               Cow position:chr22:5672844-5673024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:41-163
               
               
               Cow position:chr22:45879502-45879379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:41-164
               
               
               Cow position:chr22:44396558-44396681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-170
               
               
               Cow position:chr22:560597-560468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):66, 19

               
               
               Conread position:41-178
               
               
               Cow position:chr22:21589432-21589569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-178
               
               
               Cow position:chr22:36183866-36184001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:41-184
               
               
               Cow position:chr22:3278246-3278105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:41-184
               
               
               Cow position:chr22:10909725-10909582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr22:19143591-19143448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr22:20240733-20240591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr22:31313449-31313590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):92, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr22:31334927-31334787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):97, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr22:42991280-42991423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr22:44934087-44934230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr22:46581479-46581337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):95, 21

               
               
               Conread position:41-191
               
               
               Cow position:chr22:16200582-16200733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-192
               
               
               Cow position:chr22:5233197-5233046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-192
               
               
               Cow position:chr22:18027387-18027538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-198
               
               
               Cow position:chr22:525585-525428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr22:1860847-1861004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr22:5308212-5308369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):95, 28

               
               
               Conread position:41-198
               
               
               Cow position:chr22:5932888-5932735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:41-198
               
               
               Cow position:chr22:46853451-46853607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):67, 38

               
               
               Conread position:41-199
               
               
               Cow position:chr22:537209-537371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr22:1878901-1879063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr22:6020770-6020932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr22:27309665-27309503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr22:37266081-37266241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:41-199
               
               
               Cow position:chr22:44489995-44490155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-203
               
               
               Cow position:chr22:10546753-10546918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-204
               
               
               Cow position:chr22:27284139-27284305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-205
               
               
               Cow position:chr22:34168440-34168603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:41-218
               
               
               Cow position:chr22:693734-693914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-224
               
               
               Cow position:chr22:35672248-35672059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-243
               
               
               Cow position:chr22:18816277-18816076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-389
               
               
               Cow position:chr22:1270424-1270085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 14

               
               
               Conread position:41-432
               
               
               Cow position:chr22:23853439-23853840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-433
               
               
               Cow position:chr22:13917611-13918015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:43-197
               
               
               Cow position:chr22:44369514-44369362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):93, 37

               
               
               Conread position:47-197
               
               
               Cow position:chr22:16814000-16814150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):89, 33

               
               
               Conread position:47-197
               
               
               Cow position:chr22:17328625-17328475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-299
               
               
               Cow position:chr22:11031074-11031337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 37

               
               
               Conread position:51-184
               
               
               Cow position:chr22:327050-326919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):85, 15

               
               
               Conread position:60-435
               
               
               Cow position:chr22:3306606-3306219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 7

               
               
               Conread position:84-198
               
               
               Cow position:chr22:13773045-13773159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):11, 62

               
               
               Conread position:216-434
               
               
               Cow position:chr22:46547862-46548074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 106

               
               
               Conread position:252-432
               
               
               Cow position:chr22:1322134-1322307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):143, 31

               
               
               Conread position:26-184
               
               
               Cow position:chr23:30636208-30636050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):69, 15

               
               
               Conread position:32-184
               
               
               Cow position:chr23:2716487-2716639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):104, 49

               
               
               Conread position:32-198
               
               
               Cow position:chr23:15525709-15525875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):104, 49

               
               
               Conread position:35-156
               
               
               Cow position:chr23:2524094-2523974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-178
               
               
               Cow position:chr23:2757696-2757839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-198
               
               
               Cow position:chr23:988543-988383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr23:2574638-2574800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):103, 46

               
               
               Conread position:35-198
               
               
               Cow position:chr23:2765350-2765188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr23:4277058-4277220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr23:15219789-15219626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):102, 46

               
               
               Conread position:35-198
               
               
               Cow position:chr23:31591700-31591537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-199
               
               
               Cow position:chr23:7273734-7273897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-205
               
               
               Cow position:chr23:8980217-8980049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-270
               
               
               Cow position:chr23:16615892-16615651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):181, 8

               
               
               Conread position:35-384
               
               
               Cow position:chr23:29474454-29474100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):153, 17

               
               
               Conread position:38-184
               
               
               Cow position:chr23:20302318-20302463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):98, 43

               
               
               Conread position:40-218
               
               
               Cow position:chr23:5778980-5778803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):97, 41

               
               
               Conread position:41-171
               
               
               Cow position:chr23:31595128-31594998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:41-177
               
               
               Cow position:chr23:20156109-20155972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):52, 39

               
               
               Conread position:41-178
               
               
               Cow position:chr23:2027011-2026874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-178
               
               
               Cow position:chr23:22147142-22147009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:41-184
               
               
               Cow position:chr23:3881597-3881454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr23:4359938-4360081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr23:4640516-4640373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr23:14965644-14965501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr23:16616738-16616595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr23:19489650-19489793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr23:28217398-28217541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:41-197
               
               
               Cow position:chr23:31446923-31447079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr23:28913505-28913660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-211
               
               
               Cow position:chr23:25683953-25683786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-214
               
               
               Cow position:chr23:38578385-38578555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:41-218
               
               
               Cow position:chr23:2313130-2312949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):95, 17

               
               
               Conread position:41-218
               
               
               Cow position:chr23:14974455-14974277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:41-218
               
               
               Cow position:chr23:15177182-15177358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr23:19950475-19950295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr23:22875566-22875401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:41-219
               
               
               Cow position:chr23:4434568-4434744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):95, 43

               
               
               Conread position:41-238
               
               
               Cow position:chr23:27399612-27399808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-294
               
               
               Cow position:chr23:1327366-1327102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 43

               
               
               Conread position:45-184
               
               
               Cow position:chr23:4888785-4888924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:47-184
               
               
               Cow position:chr23:967236-967099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:47-198
               
               
               Cow position:chr23:11778601-11778753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 34

               
               
               Conread position:47-198
               
               
               Cow position:chr23:29452206-29452053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):79, 34

               
               
               Conread position:47-217
               
               
               Cow position:chr23:36031259-36031090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:53-278
               
               
               Cow position:chr23:31650790-31650559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 28

               
               
               Conread position:62-198
               
               
               Cow position:chr23:4510201-4510342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:79-339
               
               
               Cow position:chr23:1402737-1402471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:204
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):14, 52

               
               
               Conread position:33-199
               
               
               Cow position:chr24:35838429-35838265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):104, 8

               
               
               Conread position:33-278
               
               
               Cow position:chr24:16376712-16376949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):79, 8

               
               
               Conread position:35-174
               
               
               Cow position:chr24:4415341-4415202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-215
               
               
               Cow position:chr24:12237242-12237419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):100, 46

               
               
               Conread position:35-218
               
               
               Cow position:chr24:14585265-14585444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-257
               
               
               Cow position:chr24:6537728-6537951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:40-298
               
               
               Cow position:chr24:14333236-14333504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):93, 41

               
               
               Conread position:40-434
               
               
               Cow position:chr24:36559894-36559504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 41

               
               
               Conread position:41-135
               
               
               Cow position:chr24:22952330-22952423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:81
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:41-168
               
               
               Cow position:chr24:44017740-44017867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-174
               
               
               Cow position:chr24:6645897-6646030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-177
               
               
               Cow position:chr24:15392144-15392010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-184
               
               
               Cow position:chr24:148425-148282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr24:5993035-5992892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:41-184
               
               
               Cow position:chr24:12485123-12484980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr24:22793366-22793509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:41-184
               
               
               Cow position:chr24:29187477-29187620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr24:33739143-33739003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-192
               
               
               Cow position:chr24:6084211-6084362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-192
               
               
               Cow position:chr24:7061583-7061734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr24:6434434-6434592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):93, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr24:8030345-8030501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:41-197
               
               
               Cow position:chr24:17696779-17696628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):95, 48

               
               
               Conread position:41-197
               
               
               Cow position:chr24:40549068-40549224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr24:6145562-6145719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:41-198
               
               
               Cow position:chr24:12086392-12086549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr24:33933560-33933717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr24:16084466-16084303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):53, 40

               
               
               Conread position:41-211
               
               
               Cow position:chr24:37217194-37217364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-213
               
               
               Cow position:chr24:12113852-12113676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr24:9092088-9091914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-238
               
               
               Cow position:chr24:19833579-19833776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):93, 40

               
               
               Conread position:41-274
               
               
               Cow position:chr24:36708040-36708277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-277
               
               
               Cow position:chr24:1447750-1447996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):94, 39

               
               
               Conread position:41-422
               
               
               Cow position:chr24:16649123-16648735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 43

               
               
               Conread position:41-432
               
               
               Cow position:chr24:12797574-12797176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:43-191
               
               
               Cow position:chr24:9188535-9188387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):145, 38

               
               
               Conread position:47-184
               
               
               Cow position:chr24:12335574-12335438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:47-198
               
               
               Cow position:chr24:14384415-14384264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-224
               
               
               Cow position:chr24:35841422-35841244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):93, 30

               
               
               Conread position:48-184
               
               
               Cow position:chr24:6024895-6024761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):89, 33

               
               
               Conread position:60-199
               
               
               Cow position:chr24:6660386-6660246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):76, 21

               
               
               Conread position:65-194
               
               
               Cow position:chr24:6335901-6336029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):72, 16

               
               
               Conread position:66-199
               
               
               Cow position:chr24:43813983-43814120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:32-184
               
               
               Cow position:chr25:12942559-12942407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):105, 49

               
               
               Conread position:33-143
               
               
               Cow position:chr25:18027483-18027373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):103, 48

               
               
               Conread position:35-191
               
               
               Cow position:chr25:11375203-11375048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-194
               
               
               Cow position:chr25:33665728-33665570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):58, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr25:14016310-14016472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):102, 10

               
               
               Conread position:35-198
               
               
               Cow position:chr25:17468553-17468395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):68, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr25:18060455-18060295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr25:34656301-34656139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:41-165
               
               
               Cow position:chr25:25506800-25506923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):95, 26

               
               
               Conread position:41-178
               
               
               Cow position:chr25:22147645-22147782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-183
               
               
               Cow position:chr25:26922367-26922508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr25:13781180-13781323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr25:18889866-18889722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):72, 40

               
               
               Conread position:41-191
               
               
               Cow position:chr25:27022416-27022265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr25:35362279-35362123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr25:18303551-18303707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr25:17589404-17589242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr25:18194948-18194786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr25:19917234-19917396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-207
               
               
               Cow position:chr25:18275683-18275512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:41-212
               
               
               Cow position:chr25:36240706-36240870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:41-224
               
               
               Cow position:chr25:12759447-12759265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):175, 40

               
               
               Conread position:41-238
               
               
               Cow position:chr25:34346867-34346670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-239
               
               
               Cow position:chr25:26279407-26279607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 40

               
               
               Conread position:41-278
               
               
               Cow position:chr25:11933380-11933132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):97, 40

               
               
               Conread position:41-278
               
               
               Cow position:chr25:18093160-18093407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:43-183
               
               
               Cow position:chr25:20776746-20776610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):20, 44

               
               
               Conread position:43-184
               
               
               Cow position:chr25:32580118-32580258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:47-185
               
               
               Cow position:chr25:9544219-9544355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):88, 26

               
               
               Conread position:47-197
               
               
               Cow position:chr25:6172059-6172209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):89, 33

               
               
               Conread position:47-197
               
               
               Cow position:chr25:34014330-34014182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 31

               
               
               Conread position:47-198
               
               
               Cow position:chr25:8675072-8675223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):89, 33

               
               
               Conread position:47-217
               
               
               Cow position:chr25:17560476-17560309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:35-156
               
               
               Cow position:chr26:23603601-23603481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-432
               
               
               Cow position:chr26:9845413-9845024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 46

               
               
               Conread position:36-185
               
               
               Cow position:chr26:4605022-4604873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):5, 46

               
               
               Conread position:36-197
               
               
               Cow position:chr26:12588397-12588238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:40-198
               
               
               Cow position:chr26:12574239-12574081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:134
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:41-182
               
               
               Cow position:chr26:3030658-3030517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr26:5675330-5675473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr26:6849266-6849123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr26:8919021-8919164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr26:18852391-18852533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):95, 26

               
               
               Conread position:41-184
               
               
               Cow position:chr26:18855260-18855402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):95, 26

               
               
               Conread position:41-184
               
               
               Cow position:chr26:19351343-19351200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-191
               
               
               Cow position:chr26:15144589-15144438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-196
               
               
               Cow position:chr26:12656446-12656598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr26:17396760-17396603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-204
               
               
               Cow position:chr26:11253885-11253719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-212
               
               
               Cow position:chr26:12666277-12666444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-213
               
               
               Cow position:chr26:2352188-2352018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):95, 43

               
               
               Conread position:41-218
               
               
               Cow position:chr26:2198797-2198980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr26:8282890-8282715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:41-218
               
               
               Cow position:chr26:30782914-30783097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-227
               
               
               Cow position:chr26:8870053-8870245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-276
               
               
               Cow position:chr26:9849754-9849509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 29

               
               
               Conread position:41-276
               
               
               Cow position:chr26:9853265-9853020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 29

               
               
               Conread position:42-183
               
               
               Cow position:chr26:3691971-3692104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):94, 36

               
               
               Conread position:44-198
               
               
               Cow position:chr26:9112912-9113067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:51-171
               
               
               Cow position:chr26:30589189-30589071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):86, 30

               
               
               Conread position:51-184
               
               
               Cow position:chr26:9563177-9563044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):85, 30

               
               
               Conread position:52-215
               
               
               Cow position:chr26:20255382-20255538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:66-204
               
               
               Cow position:chr26:4806365-4806224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:30-184
               
               
               Cow position:chr27:1209448-1209602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):106, 51

               
               
               Conread position:33-217
               
               
               Cow position:chr27:14460355-14460170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):104, 8

               
               
               Conread position:35-183
               
               
               Cow position:chr27:26324917-26325065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):101, 45

               
               
               Conread position:35-198
               
               
               Cow position:chr27:15277967-15277808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:35-198
               
               
               Cow position:chr27:25002434-25002270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-198
               
               
               Cow position:chr27:27051779-27051949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):35, 6

               
               
               Conread position:35-224
               
               
               Cow position:chr27:28078550-28078737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):17, 40

               
               
               Conread position:35-429
               
               
               Cow position:chr27:26555901-26555485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:37-198
               
               
               Cow position:chr27:16439432-16439593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:139
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):99, 44

               
               
               Conread position:38-192
               
               
               Cow position:chr27:27753091-27752937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):98, 43

               
               
               Conread position:40-163
               
               
               Cow position:chr27:23335287-23335409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):96, 28

               
               
               Conread position:40-198
               
               
               Cow position:chr27:16432527-16432681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:41-156
               
               
               Cow position:chr27:2364858-2364973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-166
               
               
               Cow position:chr27:15638247-15638124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr27:893315-893458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr27:9993097-9992952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):72, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr27:15541437-15541593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr27:5910971-5911128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr27:16034286-16034103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:44-218
               
               
               Cow position:chr27:25804784-25804607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):87, 37

               
               
               Conread position:47-392
               
               
               Cow position:chr27:8561655-8562008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:35-184
               
               
               Cow position:chr28:18520317-18520164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):32, 50

               
               
               Conread position:35-184
               
               
               Cow position:chr28:34594125-34594274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-185
               
               
               Cow position:chr28:7901502-7901658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):77, 10

               
               
               Conread position:35-191
               
               
               Cow position:chr28:9136903-9136749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-197
               
               
               Cow position:chr28:17324203-17324036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):23, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr28:2592062-2592224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:140
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr28:4380697-4380535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:138
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):100, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr28:9155132-9154974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):152, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr28:9954279-9954442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):102, 46

               
               
               Conread position:35-198
               
               
               Cow position:chr28:24667727-24667888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-278
               
               
               Cow position:chr28:2846028-2845780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):100, 46

               
               
               Conread position:36-184
               
               
               Cow position:chr28:14705523-14705376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):97, 42

               
               
               Conread position:36-198
               
               
               Cow position:chr28:1387252-1387091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):101, 45

               
               
               Conread position:37-218
               
               
               Cow position:chr28:10463002-10462821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):101, 44

               
               
               Conread position:40-198
               
               
               Cow position:chr28:13490302-13490462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:40-199
               
               
               Cow position:chr28:1931833-1931672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:41-165
               
               
               Cow position:chr28:5566006-5566130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-171
               
               
               Cow position:chr28:1505004-1505134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-173
               
               
               Cow position:chr28:17667361-17667229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-178
               
               
               Cow position:chr28:782547-782684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-178
               
               
               Cow position:chr28:1814715-1814578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-178
               
               
               Cow position:chr28:5937633-5937766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:41-183
               
               
               Cow position:chr28:8378721-8378863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr28:485410-485267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):96, 38

               
               
               Conread position:41-184
               
               
               Cow position:chr28:2083749-2083891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr28:3192639-3192496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr28:5114659-5114516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr28:7740638-7740776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):32, 37

               
               
               Conread position:41-184
               
               
               Cow position:chr28:12410071-12409930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):95, 17

               
               
               Conread position:41-184
               
               
               Cow position:chr28:13460122-13460265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr28:14750700-14750842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):95, 7

               
               
               Conread position:41-184
               
               
               Cow position:chr28:17388634-17388777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr28:29819886-29820029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-191
               
               
               Cow position:chr28:6539109-6538958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-196
               
               
               Cow position:chr28:33252466-33252615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr28:13440724-13440568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr28:30805535-30805379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr28:1167729-1167572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr28:2724738-2724581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr28:7002142-7002299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr28:10581834-10581675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr28:22260998-22260842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr28:6780181-6780019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr28:7822410-7822572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-213
               
               
               Cow position:chr28:1953282-1953459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-217
               
               
               Cow position:chr28:34649095-34649271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):86, 39

               
               
               Conread position:41-218
               
               
               Cow position:chr28:15682273-15682443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):172, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr28:22233245-22233064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):95, 33

               
               
               Conread position:41-218
               
               
               Cow position:chr28:24587587-24587770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-246
               
               
               Cow position:chr28:8721295-8721097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):96, 42

               
               
               Conread position:41-307
               
               
               Cow position:chr28:10618962-10618695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 44

               
               
               Conread position:41-412
               
               
               Cow position:chr28:2989565-2989175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 41

               
               
               Conread position:41-428
               
               
               Cow position:chr28:5797584-5797978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-430
               
               
               Cow position:chr28:21359154-21359554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:42-292
               
               
               Cow position:chr28:21325944-21326193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):94, 39

               
               
               Conread position:44-184
               
               
               Cow position:chr28:5751551-5751410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):57, 37

               
               
               Conread position:47-184
               
               
               Cow position:chr28:15377833-15377697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):89, 28

               
               
               Conread position:48-184
               
               
               Cow position:chr28:32792220-32792085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):89, 33

               
               
               Conread position:48-432
               
               
               Cow position:chr28:5812851-5813232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 33

               
               
               Conread position:49-184
               
               
               Cow position:chr28:26426091-26425956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):87, 32

               
               
               Conread position:50-386
               
               
               Cow position:chr28:7790125-7789784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 233

               
               
               Conread position:58-199
               
               
               Cow position:chr28:24652947-24652806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):78, 23

               
               
               Conread position:62-432
               
               
               Cow position:chr28:10071153-10071518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 19

               
               
               Conread position:84-274
               
               
               Cow position:chr28:11357519-11357320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:128-432
               
               
               Cow position:chr28:7817377-7817698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):9, 135

               
               
               Conread position:141-434
               
               
               Cow position:chr28:5764499-5764787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):75, 106

               
               
               Conread position:232-432
               
               
               Cow position:chr28:28117845-28118048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):20, 13

               
               
               Conread position:3-171
               
               
               Cow position:chr29:42802224-42802394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 12

               
               
               Conread position:27-184
               
               
               Cow position:chr29:26164719-26164561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):9, 55

               
               
               Conread position:30-218
               
               
               Cow position:chr29:24709145-24708954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):17, 56

               
               
               Conread position:33-184
               
               
               Cow position:chr29:13582178-13582329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):8, 49

               
               
               Conread position:33-385
               
               
               Cow position:chr29:5983093-5982740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 12

               
               
               Conread position:35-171
               
               
               Cow position:chr29:42650397-42650534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):99, 10

               
               
               Conread position:35-175
               
               
               Cow position:chr29:17663016-17663155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:81
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:35-178
               
               
               Cow position:chr29:19653220-19653363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-178
               
               
               Cow position:chr29:38227092-38227234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-185
               
               
               Cow position:chr29:10847979-10847826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-191
               
               
               Cow position:chr29:16770236-16770392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):101, 8

               
               
               Conread position:35-198
               
               
               Cow position:chr29:21543256-21543094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-218
               
               
               Cow position:chr29:21426911-21426733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):177, 6

               
               
               Conread position:35-236
               
               
               Cow position:chr29:23975952-23976153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-238
               
               
               Cow position:chr29:410412-410210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:36-190
               
               
               Cow position:chr29:14013577-14013731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):99, 45

               
               
               Conread position:36-190
               
               
               Cow position:chr29:14072834-14072680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):99, 45

               
               
               Conread position:36-209
               
               
               Cow position:chr29:2750304-2750135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):102, 45

               
               
               Conread position:39-214
               
               
               Cow position:chr29:30811643-30811813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):13, 43

               
               
               Conread position:40-198
               
               
               Cow position:chr29:27040652-27040497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:40-198
               
               
               Cow position:chr29:35196784-35196939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:41-173
               
               
               Cow position:chr29:34799690-34799558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-178
               
               
               Cow position:chr29:6266383-6266246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-178
               
               
               Cow position:chr29:14586040-14586177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-178
               
               
               Cow position:chr29:40502862-40502727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-183
               
               
               Cow position:chr29:15894732-15894590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr29:2099963-2100106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr29:2690020-2690161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):95, 27

               
               
               Conread position:41-184
               
               
               Cow position:chr29:7431097-7430958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr29:7840915-7841057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:41-184
               
               
               Cow position:chr29:18856826-18856683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr29:20251278-20251420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 35

               
               
               Conread position:41-184
               
               
               Cow position:chr29:25932426-25932283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr29:27980799-27980658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr29:35296992-35297135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr29:39079594-39079451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr29:45459831-45459977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):79, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr29:27250224-27250068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr29:34925597-34925753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr29:2466216-2466059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr29:2841255-2841098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr29:5957722-5957879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr29:11049396-11049553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr29:610494-610332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-200
               
               
               Cow position:chr29:19885188-19885351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr29:9643642-9643461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):19, 44

               
               
               Conread position:41-219
               
               
               Cow position:chr29:10823851-10823671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 42

               
               
               Conread position:41-243
               
               
               Cow position:chr29:32539928-32540130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-266
               
               
               Cow position:chr29:104685-104913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:43-184
               
               
               Cow position:chr29:669937-669796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:44-178
               
               
               Cow position:chr29:19623126-19622992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):92, 39

               
               
               Conread position:44-184
               
               
               Cow position:chr29:48357-48219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):93, 37

               
               
               Conread position:44-278
               
               
               Cow position:chr29:1715363-1715606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):160, 42

               
               
               Conread position:47-184
               
               
               Cow position:chr29:45587236-45587099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:49-184
               
               
               Cow position:chr29:16022656-16022791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 30

               
               
               Conread position:49-218
               
               
               Cow position:chr29:803222-803061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):67, 26

               
               
               Conread position:49-238
               
               
               Cow position:chr29:10648125-10647936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):87, 32

               
               
               Conread position:53-184
               
               
               Cow position:chr29:31181545-31181676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):80, 28

               
               
               Conread position:60-435
               
               
               Cow position:chr29:14086311-14085937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:273
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):76, 21

               
               
               Conread position:62-238
               
               
               Cow position:chr29:43322694-43322869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):74, 19

               
               
               Conread position:66-184
               
               
               Cow position:chr29:15968718-15968600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:120-313
               
               
               Cow position:chr29:8331136-8330939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:215-354
               
               
               Cow position:chr29:2749914-2749781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):37, 97

               
               
               Conread position:12-198
               
               
               Cow position:chr3:53713049-53713241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):11, 75

               
               
               Conread position:23-198
               
               
               Cow position:chr3:26822491-26822316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:145
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):113, 58

               
               
               Conread position:32-432
               
               
               Cow position:chr3:66990814-66991196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 9

               
               
               Conread position:33-184
               
               
               Cow position:chr3:7481203-7481053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):103, 8

               
               
               Conread position:33-238
               
               
               Cow position:chr3:21182656-21182454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):104, 48

               
               
               Conread position:34-278
               
               
               Cow position:chr3:45775063-45774815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):106, 33

               
               
               Conread position:35-135
               
               
               Cow position:chr3:5047153-5047055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:35-171
               
               
               Cow position:chr3:70083621-70083488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:35-184
               
               
               Cow position:chr3:48060801-48060653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:35-184
               
               
               Cow position:chr3:72630100-72630249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-195
               
               
               Cow position:chr3:42579936-42579779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):97, 6

               
               
               Conread position:35-197
               
               
               Cow position:chr3:59861397-59861558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr3:2633956-2634113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:35-198
               
               
               Cow position:chr3:2654137-2654295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:35-198
               
               
               Cow position:chr3:3806370-3806522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):103, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr3:5829597-5829436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr3:9716845-9717003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):102, 13

               
               
               Conread position:35-198
               
               
               Cow position:chr3:31897946-31897784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr3:66119686-66119848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr3:77474791-77474955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):94, 6

               
               
               Conread position:35-199
               
               
               Cow position:chr3:472563-472726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-218
               
               
               Cow position:chr3:14754267-14754086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):103, 46

               
               
               Conread position:35-218
               
               
               Cow position:chr3:45869186-45869003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:35-238
               
               
               Cow position:chr3:594606-594809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-292
               
               
               Cow position:chr3:2908328-2908070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):17, 47

               
               
               Conread position:35-380
               
               
               Cow position:chr3:6685492-6685830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 6

               
               
               Conread position:37-424
               
               
               Cow position:chr3:63004701-63004315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 141

               
               
               Conread position:40-195
               
               
               Cow position:chr3:40157471-40157319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:40-217
               
               
               Cow position:chr3:34396046-34395874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:41-161
               
               
               Cow position:chr3:50915342-50915462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-165
               
               
               Cow position:chr3:18811539-18811663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:41-170
               
               
               Cow position:chr3:19756923-19756794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-171
               
               
               Cow position:chr3:53515649-53515779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-178
               
               
               Cow position:chr3:64017328-64017192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-180
               
               
               Cow position:chr3:32622999-32622861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-183
               
               
               Cow position:chr3:56340391-56340249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:41-184
               
               
               Cow position:chr3:7158697-7158554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr3:14439725-14439582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr3:18542372-18542229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr3:22335924-22336067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr3:23214026-23213883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr3:30314602-30314745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-184
               
               
               Cow position:chr3:34030863-34030720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr3:41211701-41211558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr3:49137504-49137361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr3:49613941-49613798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr3:56321352-56321494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):95, 26

               
               
               Conread position:41-184
               
               
               Cow position:chr3:57484693-57484551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr3:68873718-68873576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:41-184
               
               
               Cow position:chr3:75041132-75040991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr3:78027374-78027231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-192
               
               
               Cow position:chr3:66890927-66890776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-194
               
               
               Cow position:chr3:3523057-3523210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-196
               
               
               Cow position:chr3:10239685-10239840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):93, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr3:36117699-36117855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr3:36864323-36864167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr3:64028050-64027894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr3:68699933-68699781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:41-198
               
               
               Cow position:chr3:207125-206968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr3:31354229-31354072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr3:45895522-45895365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr3:45974533-45974690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr3:66638776-66638933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr3:6782420-6782582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):93, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr3:18859452-18859612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):91, 17

               
               
               Conread position:41-199
               
               
               Cow position:chr3:64650661-64650824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):88, 40

               
               
               Conread position:41-204
               
               
               Cow position:chr3:2917497-2917663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-205
               
               
               Cow position:chr3:29331241-29331077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-214
               
               
               Cow position:chr3:36127427-36127602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):79, 40

               
               
               Conread position:41-215
               
               
               Cow position:chr3:66620210-66620379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):95, 29

               
               
               Conread position:41-215
               
               
               Cow position:chr3:77423716-77423882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:41-216
               
               
               Cow position:chr3:19938921-19939098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr3:3980426-3980595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):95, 26

               
               
               Conread position:41-218
               
               
               Cow position:chr3:19878694-19878876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr3:45032777-45032960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr3:47081622-47081439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr3:47179167-47178986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr3:55229665-55229486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-219
               
               
               Cow position:chr3:24314505-24314687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-220
               
               
               Cow position:chr3:7168829-7169013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-239
               
               
               Cow position:chr3:69933430-69933628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-243
               
               
               Cow position:chr3:2710926-2710725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-246
               
               
               Cow position:chr3:26949548-26949756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):97, 42

               
               
               Conread position:41-278
               
               
               Cow position:chr3:4027308-4027557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-278
               
               
               Cow position:chr3:36098684-36098434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):71, 40

               
               
               Conread position:41-299
               
               
               Cow position:chr3:39326753-39327020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-350
               
               
               Cow position:chr3:14632662-14632348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 40

               
               
               Conread position:41-409
               
               
               Cow position:chr3:29595230-29595607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 42

               
               
               Conread position:41-415
               
               
               Cow position:chr3:48230976-48230591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 277

               
               
               Conread position:41-426
               
               
               Cow position:chr3:52864430-52864037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:43-218
               
               
               Cow position:chr3:46861265-46861084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:43-434
               
               
               Cow position:chr3:64358132-64357729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 38

               
               
               Conread position:44-178
               
               
               Cow position:chr3:49545168-49545034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:44-194
               
               
               Cow position:chr3:58947497-58947646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:46-205
               
               
               Cow position:chr3:19890946-19890788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):91, 35

               
               
               Conread position:47-184
               
               
               Cow position:chr3:5954144-5954007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-184
               
               
               Cow position:chr3:40340070-40339933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-184
               
               
               Cow position:chr3:40823429-40823566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-184
               
               
               Cow position:chr3:42432273-42432410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-199
               
               
               Cow position:chr3:5995655-5995503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-216
               
               
               Cow position:chr3:49677828-49677997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-218
               
               
               Cow position:chr3:26837721-26837554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:47-277
               
               
               Cow position:chr3:3054638-3054867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:48-171
               
               
               Cow position:chr3:19944093-19944216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:48-184
               
               
               Cow position:chr3:36881879-36881743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):87, 33

               
               
               Conread position:51-218
               
               
               Cow position:chr3:51940375-51940212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:61-430
               
               
               Cow position:chr3:24591571-24591214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 26

               
               
               Conread position:62-198
               
               
               Cow position:chr3:18463535-18463396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):75, 24

               
               
               Conread position:62-219
               
               
               Cow position:chr3:32842387-32842235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):74, 19

               
               
               Conread position:71-385
               
               
               Cow position:chr3:19802717-19803038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:83-192
               
               
               Cow position:chr3:37969124-37969234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:95-215
               
               
               Cow position:chr3:63241688-63241567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:23-184
               
               
               Cow position:chr4:27333259-27333419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):114, 6

               
               
               Conread position:29-256
               
               
               Cow position:chr4:17530602-17530366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):10, 56

               
               
               Conread position:34-385
               
               
               Cow position:chr4:21338168-21337818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 7

               
               
               Conread position:35-184
               
               
               Cow position:chr4:44724919-44725067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-184
               
               
               Cow position:chr4:47717770-47717623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):121, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr4:10408513-10408671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):69, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr4:61256732-61256889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr4:66179152-66178990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:139
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-205
               
               
               Cow position:chr4:51044094-51043928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):102, 26

               
               
               Conread position:35-224
               
               
               Cow position:chr4:8598322-8598134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):181, 46

               
               
               Conread position:35-369
               
               
               Cow position:chr4:1464089-1463761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):181, 46

               
               
               Conread position:36-199
               
               
               Cow position:chr4:41954308-41954477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):7, 47

               
               
               Conread position:36-218
               
               
               Cow position:chr4:11393510-11393328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):134, 45

               
               
               Conread position:40-198
               
               
               Cow position:chr4:66925839-66925995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):93, 40

               
               
               Conread position:41-143
               
               
               Cow position:chr4:4905987-4906089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-173
               
               
               Cow position:chr4:355751-355881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):95, 19

               
               
               Conread position:41-178
               
               
               Cow position:chr4:3961432-3961569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-178
               
               
               Cow position:chr4:17926414-17926277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr4:4415923-4416066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr4:5880006-5880149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr4:6490524-6490381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr4:12587139-12587282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr4:13492417-13492559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):95, 28

               
               
               Conread position:41-184
               
               
               Cow position:chr4:24445360-24445223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr4:25599778-25599635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr4:26887022-26886881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:41-184
               
               
               Cow position:chr4:32212008-32212151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr4:41331278-41331422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):77, 39

               
               
               Conread position:41-184
               
               
               Cow position:chr4:43319805-43319663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 49

               
               
               Conread position:41-184
               
               
               Cow position:chr4:43880949-43881092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr4:45049457-45049315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr4:47764329-47764187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):95, 29

               
               
               Conread position:41-191
               
               
               Cow position:chr4:158356-158507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:41-191
               
               
               Cow position:chr4:16056442-16056593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr4:602834-602990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr4:9354930-9354774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr4:9587104-9587260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-197
               
               
               Cow position:chr4:13547870-13548026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr4:65223693-65223537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr4:11618694-11618848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr4:18516737-18516894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr4:1930783-1930621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr4:18424684-18424522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr4:101092-100910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr4:3125636-3125819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr4:6268787-6268608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):151, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr4:30307618-30307435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-224
               
               
               Cow position:chr4:16359724-16359911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-238
               
               
               Cow position:chr4:12241377-12241180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-254
               
               
               Cow position:chr4:48026238-48026451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-384
               
               
               Cow position:chr4:60264727-60264376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 43

               
               
               Conread position:41-422
               
               
               Cow position:chr4:28830870-28831255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:42-217
               
               
               Cow position:chr4:31565463-31565285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:43-212
               
               
               Cow position:chr4:11384802-11384967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):94, 38

               
               
               Conread position:44-174
               
               
               Cow position:chr4:41119857-41119987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):90, 37

               
               
               Conread position:44-178
               
               
               Cow position:chr4:33073265-33073132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):92, 11

               
               
               Conread position:44-184
               
               
               Cow position:chr4:57979472-57979611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:48-432
               
               
               Cow position:chr4:46664040-46664422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 19

               
               
               Conread position:49-199
               
               
               Cow position:chr4:18190255-18190408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):88, 32

               
               
               Conread position:50-199
               
               
               Cow position:chr4:41957979-41958132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):86, 31

               
               
               Conread position:52-198
               
               
               Cow position:chr4:33493677-33493822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):84, 29

               
               
               Conread position:53-197
               
               
               Cow position:chr4:31669122-31669268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 28

               
               
               Conread position:62-382
               
               
               Cow position:chr4:34185018-34184716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):75, 17

               
               
               Conread position:169-398
               
               
               Cow position:chr4:54955717-54955954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):48, 132

               
               
               Conread position:31-185
               
               
               Cow position:chr5:25206765-25206605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 9

               
               
               Conread position:32-218
               
               
               Cow position:chr5:32945800-32945988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:155
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):104, 49

               
               
               Conread position:33-184
               
               
               Cow position:chr5:24098577-24098727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):103, 8

               
               
               Conread position:33-272
               
               
               Cow position:chr5:46630513-46630273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):104, 8

               
               
               Conread position:35-156
               
               
               Cow position:chr5:3504321-3504200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):101, 48

               
               
               Conread position:35-178
               
               
               Cow position:chr5:76123650-76123509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):101, 25

               
               
               Conread position:35-180
               
               
               Cow position:chr5:57977189-57977332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-185
               
               
               Cow position:chr5:32733322-32733173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:35-191
               
               
               Cow position:chr5:26769740-26769890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):102, 10

               
               
               Conread position:35-191
               
               
               Cow position:chr5:27570042-27570197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr5:27652052-27651890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:35-198
               
               
               Cow position:chr5:29009285-29009445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):77, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr5:34202865-34203027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr5:41550997-41550834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):94, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr5:49182198-49182361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):96, 32

               
               
               Conread position:35-217
               
               
               Cow position:chr5:41962308-41962127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:156
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:35-271
               
               
               Cow position:chr5:25000714-25000475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):100, 45

               
               
               Conread position:35-378
               
               
               Cow position:chr5:49593525-49593174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 6

               
               
               Conread position:36-185
               
               
               Cow position:chr5:12644009-12643864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):101, 45

               
               
               Conread position:37-184
               
               
               Cow position:chr5:14380094-14380240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):99, 44

               
               
               Conread position:37-191
               
               
               Cow position:chr5:28031408-28031563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):101, 44

               
               
               Conread position:40-171
               
               
               Cow position:chr5:24330208-24330339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):76, 44

               
               
               Conread position:40-198
               
               
               Cow position:chr5:9686494-9686335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):89, 43

               
               
               Conread position:40-198
               
               
               Cow position:chr5:45700200-45700358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:40-210
               
               
               Cow position:chr5:17774106-17773935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):95, 41

               
               
               Conread position:41-155
               
               
               Cow position:chr5:61273252-61273138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-165
               
               
               Cow position:chr5:10918733-10918857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-170
               
               
               Cow position:chr5:34696537-34696667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-171
               
               
               Cow position:chr5:48808780-48808650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-171
               
               
               Cow position:chr5:54792700-54792570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-178
               
               
               Cow position:chr5:30579257-30579393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-178
               
               
               Cow position:chr5:64782083-64781946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-183
               
               
               Cow position:chr5:2430197-2430055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-183
               
               
               Cow position:chr5:23960380-23960238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-183
               
               
               Cow position:chr5:54932283-54932141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):95, 36

               
               
               Conread position:41-184
               
               
               Cow position:chr5:415787-415644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr5:2914386-2914526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr5:29042446-29042589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr5:37732281-37732424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr5:46663938-46664081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-184
               
               
               Cow position:chr5:49518593-49518736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr5:73489626-73489483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-192
               
               
               Cow position:chr5:27909337-27909186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-194
               
               
               Cow position:chr5:32673805-32673652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:131
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-195
               
               
               Cow position:chr5:27001544-27001696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:41-197
               
               
               Cow position:chr5:9042973-9043129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-197
               
               
               Cow position:chr5:24576850-24577006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr5:44459418-44459574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr5:48468344-48468188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr5:59482189-59482344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr5:39164865-39164708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr5:49119346-49119189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:41-199
               
               
               Cow position:chr5:4019263-4019101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr5:26079283-26079124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr5:31706509-31706671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr5:32772417-32772579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):93, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr5:45182168-45182006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr5:58195937-58196099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:41-205
               
               
               Cow position:chr5:46644622-46644789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):95, 43

               
               
               Conread position:41-214
               
               
               Cow position:chr5:18271543-18271714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):74, 39

               
               
               Conread position:41-218
               
               
               Cow position:chr5:6589086-6588902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):66, 45

               
               
               Conread position:41-218
               
               
               Cow position:chr5:10776329-10776146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr5:10843484-10843301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-218
               
               
               Cow position:chr5:46738650-46738476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr5:47831176-47830995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):145, 40

               
               
               Conread position:41-224
               
               
               Cow position:chr5:46776014-46776203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):7, 41

               
               
               Conread position:41-224
               
               
               Cow position:chr5:59060553-59060742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-238
               
               
               Cow position:chr5:57482611-57482414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-258
               
               
               Cow position:chr5:41529658-41529428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:183
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-270
               
               
               Cow position:chr5:27489182-27489422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):94, 38

               
               
               Conread position:41-270
               
               
               Cow position:chr5:52433902-52434141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):126, 40

               
               
               Conread position:41-432
               
               
               Cow position:chr5:46659650-46660051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 40

               
               
               Conread position:43-184
               
               
               Cow position:chr5:2531208-2531349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:43-218
               
               
               Cow position:chr5:23228168-23228340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:43-219
               
               
               Cow position:chr5:3964401-3964571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):143, 38

               
               
               Conread position:45-218
               
               
               Cow position:chr5:51162838-51163010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:47-184
               
               
               Cow position:chr5:55627928-55628064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-198
               
               
               Cow position:chr5:20972104-20971954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:47-223
               
               
               Cow position:chr5:27682803-27682622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):83, 33

               
               
               Conread position:52-278
               
               
               Cow position:chr5:27059178-27058939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):85, 29

               
               
               Conread position:52-278
               
               
               Cow position:chr5:27060081-27059842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):85, 29

               
               
               Conread position:53-169
               
               
               Cow position:chr5:31101667-31101548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 30

               
               
               Conread position:65-199
               
               
               Cow position:chr5:18665953-18666089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):69, 16

               
               
               Conread position:67-198
               
               
               Cow position:chr5:6611972-6612103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:67-434
               
               
               Cow position:chr5:40053420-40053777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 14

               
               
               Conread position:68-198
               
               
               Cow position:chr5:4385210-4385338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:72-184
               
               
               Cow position:chr5:18122502-18122390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):64, 9

               
               
               Conread position:72-197
               
               
               Cow position:chr5:10482814-10482939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 9

               
               
               Conread position:86-197
               
               
               Cow position:chr5:4089050-4089162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:89-184
               
               
               Cow position:chr5:35299835-35299931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:90-197
               
               
               Cow position:chr5:56145038-56144930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:168-367
               
               
               Cow position:chr5:61272800-61272597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):27, 146

               
               
               Conread position:223-432
               
               
               Cow position:chr5:41962148-41961929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 6

               
               
               Conread position:276-434
               
               
               Cow position:chr5:39247141-39246983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):129, 49

               
               
               Conread position:305-432
               
               
               Cow position:chr5:41528880-41528752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 19

               
               
               Conread position:23-235
               
               
               Cow position:chr6:20561052-20560841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):113, 25

               
               
               Conread position:26-184
               
               
               Cow position:chr6:8201800-8201957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):110, 15

               
               
               Conread position:26-255
               
               
               Cow position:chr6:27529944-27529717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):110, 15

               
               
               Conread position:33-278
               
               
               Cow position:chr6:35420537-35420286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):11, 24

               
               
               Conread position:35-181
               
               
               Cow position:chr6:66231864-66232011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):67, 45

               
               
               Conread position:35-185
               
               
               Cow position:chr6:65007760-65007907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-197
               
               
               Cow position:chr6:40315124-40315277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:35-198
               
               
               Cow position:chr6:19453989-19454149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr6:65928007-65928170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-199
               
               
               Cow position:chr6:10558588-10558425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-217
               
               
               Cow position:chr6:13276872-13277056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:40-432
               
               
               Cow position:chr6:43608282-43607887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:41-165
               
               
               Cow position:chr6:5951169-5951045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-165
               
               
               Cow position:chr6:28275059-28275183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-177
               
               
               Cow position:chr6:25214335-25214470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):94, 49

               
               
               Conread position:41-178
               
               
               Cow position:chr6:6566682-6566819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-178
               
               
               Cow position:chr6:17046132-17046269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-178
               
               
               Cow position:chr6:64715306-64715443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr6:2374777-2374920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr6:2554783-2554926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:41-184
               
               
               Cow position:chr6:3277873-3277730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr6:13104135-13104278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr6:13847112-13847252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr6:16051957-16052100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr6:24239142-24239285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr6:27169654-27169801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):64, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr6:28491437-28491294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr6:30275101-30274959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr6:33459940-33460083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr6:34127430-34127573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr6:34892929-34892786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr6:35876641-35876498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr6:40251740-40251883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:41-184
               
               
               Cow position:chr6:55544250-55544107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr6:58408835-58408692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-191
               
               
               Cow position:chr6:65822049-65821898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr6:7866674-7866518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr6:28063413-28063571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr6:27469328-27469481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):95, 37

               
               
               Conread position:41-198
               
               
               Cow position:chr6:29311568-29311725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-198
               
               
               Cow position:chr6:65880944-65881101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr6:44029120-44029278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-200
               
               
               Cow position:chr6:3488321-3488163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-214
               
               
               Cow position:chr6:32330713-32330544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:41-215
               
               
               Cow position:chr6:65841661-65841834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-217
               
               
               Cow position:chr6:40554509-40554334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr6:1405161-1404978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr6:1411863-1411680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr6:3149081-3149264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr6:13943986-13944167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr6:26670781-26670598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr6:44150479-44150297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr6:65899826-65899647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):61, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr6:68026869-68027052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-243
               
               
               Cow position:chr6:30479176-30479380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:159
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-270
               
               
               Cow position:chr6:7179619-7179383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):92, 40

               
               
               Conread position:41-304
               
               
               Cow position:chr6:10641237-10641509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 42

               
               
               Conread position:41-385
               
               
               Cow position:chr6:38232354-38232706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-434
               
               
               Cow position:chr6:37116216-37116602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 28

               
               
               Conread position:42-199
               
               
               Cow position:chr6:331390-331230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):94, 30

               
               
               Conread position:43-199
               
               
               Cow position:chr6:39908606-39908766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:44-184
               
               
               Cow position:chr6:15141100-15140960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:44-184
               
               
               Cow position:chr6:15280472-15280332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:44-198
               
               
               Cow position:chr6:28105764-28105612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):94, 31

               
               
               Conread position:44-199
               
               
               Cow position:chr6:17598199-17598040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:47-178
               
               
               Cow position:chr6:913725-913867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:47-178
               
               
               Cow position:chr6:8761221-8761091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:47-198
               
               
               Cow position:chr6:36526126-36526280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 37

               
               
               Conread position:47-199
               
               
               Cow position:chr6:43617798-43617954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):89, 36

               
               
               Conread position:47-218
               
               
               Cow position:chr6:7141403-7141227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:48-178
               
               
               Cow position:chr6:3889395-3889265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:48-218
               
               
               Cow position:chr6:59919201-59919029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:49-278
               
               
               Cow position:chr6:59740973-59740734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):88, 32

               
               
               Conread position:52-171
               
               
               Cow position:chr6:33388926-33389048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):85, 29

               
               
               Conread position:57-159
               
               
               Cow position:chr6:9738793-9738895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):79, 24

               
               
               Conread position:60-224
               
               
               Cow position:chr6:1822544-1822380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):76, 21

               
               
               Conread position:61-178
               
               
               Cow position:chr6:58026855-58026971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):75, 16

               
               
               Conread position:62-238
               
               
               Cow position:chr6:47043101-47042925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):74, 19

               
               
               Conread position:64-197
               
               
               Cow position:chr6:10499624-10499491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):72, 17

               
               
               Conread position:65-391
               
               
               Cow position:chr6:6476388-6476063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 16

               
               
               Conread position:66-198
               
               
               Cow position:chr6:52693125-52693257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:68-198
               
               
               Cow position:chr6:12650845-12650715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):70, 13

               
               
               Conread position:80-197
               
               
               Cow position:chr6:65914328-65914445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 91

               
               
               Conread position:86-184
               
               
               Cow position:chr6:40275209-40275308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:84
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:87-218
               
               
               Cow position:chr6:49520197-49520063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):50, 25

               
               
               Conread position:91-197
               
               
               Cow position:chr6:24323255-24323148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:257-434
               
               
               Cow position:chr6:35419849-35419674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):138, 26

               
               
               Conread position:30-219
               
               
               Cow position:chr7:68478598-68478786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):106, 42

               
               
               Conread position:33-165
               
               
               Cow position:chr7:33878211-33878080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):103, 8

               
               
               Conread position:33-165
               
               
               Cow position:chr7:62679510-62679382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:33-198
               
               
               Cow position:chr7:68232100-68232264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):104, 8

               
               
               Conread position:33-210
               
               
               Cow position:chr7:68907985-68908163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):9, 47

               
               
               Conread position:35-153
               
               
               Cow position:chr7:36085498-36085614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:35-168
               
               
               Cow position:chr7:41869784-41869652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):83, 6

               
               
               Conread position:35-183
               
               
               Cow position:chr7:994397-994539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):102, 13

               
               
               Conread position:35-184
               
               
               Cow position:chr7:33406080-33405932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):101, 28

               
               
               Conread position:35-198
               
               
               Cow position:chr7:35297109-35296944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr7:41490273-41490433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr7:63385501-63385664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-198
               
               
               Cow position:chr7:67417206-67417366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr7:68479328-68479491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-199
               
               
               Cow position:chr7:52119923-52119760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-259
               
               
               Cow position:chr7:58993355-58993585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):100, 46

               
               
               Conread position:35-306
               
               
               Cow position:chr7:35287398-35287118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):58, 19

               
               
               Conread position:35-378
               
               
               Cow position:chr7:68777991-68777653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-430
               
               
               Cow position:chr7:29470285-29470684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:35-432
               
               
               Cow position:chr7:29370421-29370032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:35-432
               
               
               Cow position:chr7:53990914-53991310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:37-175
               
               
               Cow position:chr7:1357523-1357385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):95, 44

               
               
               Conread position:40-360
               
               
               Cow position:chr7:24934798-24934476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 20

               
               
               Conread position:41-165
               
               
               Cow position:chr7:27786790-27786912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-174
               
               
               Cow position:chr7:34149265-34149398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-175
               
               
               Cow position:chr7:54603018-54603152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):91, 40

               
               
               Conread position:41-178
               
               
               Cow position:chr7:10431251-10431114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:41-178
               
               
               Cow position:chr7:45948983-45948848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:41-183
               
               
               Cow position:chr7:24808300-24808158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-183
               
               
               Cow position:chr7:34486080-34486223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:41-184
               
               
               Cow position:chr7:1372485-1372342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr7:6642710-6642567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr7:7257362-7257503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:41-184
               
               
               Cow position:chr7:8145077-8144934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr7:14139434-14139291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr7:20515605-20515462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr7:20528508-20528365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr7:20555881-20556024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr7:20799275-20799136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr7:21985566-21985709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr7:39791922-39792065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr7:46901913-46901771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):96, 42

               
               
               Conread position:41-184
               
               
               Cow position:chr7:60463316-60463459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr7:64241781-64241638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr7:67799018-67799161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):96, 42

               
               
               Conread position:41-185
               
               
               Cow position:chr7:48633547-48633690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 23

               
               
               Conread position:41-191
               
               
               Cow position:chr7:1449651-1449800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr7:16705-16549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr7:21320323-21320479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr7:23815803-23815647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr7:43830858-43830702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr7:61559380-61559536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr7:446464-446307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr7:5183572-5183729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):92, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr7:3300987-3300829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr7:11466571-11466410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):95, 29

               
               
               Conread position:41-217
               
               
               Cow position:chr7:52804542-52804374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):163, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr7:1611044-1610867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:41-218
               
               
               Cow position:chr7:6648488-6648306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr7:11446722-11446906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):27, 41

               
               
               Conread position:41-218
               
               
               Cow position:chr7:25439673-25439860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-224
               
               
               Cow position:chr7:3234516-3234327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-238
               
               
               Cow position:chr7:13537416-13537220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-238
               
               
               Cow position:chr7:55537750-55537557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:41-239
               
               
               Cow position:chr7:5662541-5662738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:41-244
               
               
               Cow position:chr7:41487721-41487927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):75, 40

               
               
               Conread position:41-252
               
               
               Cow position:chr7:21310372-21310593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:175
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-260
               
               
               Cow position:chr7:49290828-49291058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-278
               
               
               Cow position:chr7:1400193-1399949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):92, 40

               
               
               Conread position:41-278
               
               
               Cow position:chr7:63021015-63021254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):97, 40

               
               
               Conread position:41-322
               
               
               Cow position:chr7:68857947-68857666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 41

               
               
               Conread position:41-385
               
               
               Cow position:chr7:3154933-3155294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 42

               
               
               Conread position:42-267
               
               
               Cow position:chr7:27540196-27539961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:42-278
               
               
               Cow position:chr7:55280635-55280390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:43-271
               
               
               Cow position:chr7:39555927-39555689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):94, 38

               
               
               Conread position:47-178
               
               
               Cow position:chr7:21127489-21127359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:47-184
               
               
               Cow position:chr7:21234839-21234702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):82, 34

               
               
               Conread position:47-198
               
               
               Cow position:chr7:21929317-21929466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):89, 22

               
               
               Conread position:47-432
               
               
               Cow position:chr7:39108067-39107686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 39

               
               
               Conread position:47-432
               
               
               Cow position:chr7:51014125-51014504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 37

               
               
               Conread position:48-278
               
               
               Cow position:chr7:47050857-47051098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):89, 33

               
               
               Conread position:53-218
               
               
               Cow position:chr7:27147429-27147594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):83, 14

               
               
               Conread position:60-405
               
               
               Cow position:chr7:54196071-54195729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 21

               
               
               Conread position:74-198
               
               
               Cow position:chr7:21975546-21975423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):63, 7

               
               
               Conread position:117-278
               
               
               Cow position:chr7:6489096-6488923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:23-183
               
               
               Cow position:chr8:19330073-19330232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):113, 18

               
               
               Conread position:32-178
               
               
               Cow position:chr8:60060728-60060870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:32-278
               
               
               Cow position:chr8:47672817-47673072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 9

               
               
               Conread position:35-165
               
               
               Cow position:chr8:27983446-27983319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:35-168
               
               
               Cow position:chr8:47885383-47885510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:35-184
               
               
               Cow position:chr8:47661977-47661828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-185
               
               
               Cow position:chr8:42759292-42759442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-191
               
               
               Cow position:chr8:11821661-11821817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-197
               
               
               Cow position:chr8:11761628-11761789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):102, 26

               
               
               Conread position:35-198
               
               
               Cow position:chr8:44036430-44036267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):84, 10

               
               
               Conread position:35-210
               
               
               Cow position:chr8:47670809-47670973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:35-218
               
               
               Cow position:chr8:17311366-17311551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-430
               
               
               Cow position:chr8:42161377-42160991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 6

               
               
               Conread position:35-432
               
               
               Cow position:chr8:11970242-11969848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-432
               
               
               Cow position:chr8:33430272-33430676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:36-218
               
               
               Cow position:chr8:22571946-22571758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):100, 45

               
               
               Conread position:36-218
               
               
               Cow position:chr8:51667947-51667764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):100, 47

               
               
               Conread position:38-217
               
               
               Cow position:chr8:11832051-11832230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):98, 43

               
               
               Conread position:39-434
               
               
               Cow position:chr8:44693636-44694036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 42

               
               
               Conread position:40-158
               
               
               Cow position:chr8:61066893-61066775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):98, 41

               
               
               Conread position:40-198
               
               
               Cow position:chr8:23217113-23217271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):97, 43

               
               
               Conread position:40-198
               
               
               Cow position:chr8:32930863-32931021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:136
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):94, 41

               
               
               Conread position:40-198
               
               
               Cow position:chr8:46600647-46600805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):97, 41

               
               
               Conread position:40-218
               
               
               Cow position:chr8:45448810-45448988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):68, 40

               
               
               Conread position:40-240
               
               
               Cow position:chr8:45316772-45316565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:40-431
               
               
               Cow position:chr8:61035015-61034597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 41

               
               
               Conread position:41-156
               
               
               Cow position:chr8:8910575-8910690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:41-163
               
               
               Cow position:chr8:14928639-14928517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-171
               
               
               Cow position:chr8:14591548-14591418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-171
               
               
               Cow position:chr8:25522755-25522885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-178
               
               
               Cow position:chr8:5016535-5016672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-178
               
               
               Cow position:chr8:23770989-23771126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-178
               
               
               Cow position:chr8:24915983-24915846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-183
               
               
               Cow position:chr8:34348033-34348174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):95, 28

               
               
               Conread position:41-184
               
               
               Cow position:chr8:6065414-6065271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr8:8556794-8556651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr8:10743276-10743133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr8:10748729-10748872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr8:27578756-27578899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr8:32319195-32319052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr8:32631672-32631530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:41-184
               
               
               Cow position:chr8:39195862-39195720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):95, 41

               
               
               Conread position:41-184
               
               
               Cow position:chr8:42484266-42484409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr8:44244219-44244076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr8:47069451-47069308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr8:49214781-49214924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-184
               
               
               Cow position:chr8:50288797-50288654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr8:50994142-50994285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-185
               
               
               Cow position:chr8:42420211-42420066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-193
               
               
               Cow position:chr8:21158464-21158312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-194
               
               
               Cow position:chr8:50934455-50934608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-195
               
               
               Cow position:chr8:45189438-45189592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr8:8655864-8655708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr8:9275365-9275521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr8:2171025-2170868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr8:8229427-8229270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr8:19050830-19050989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):90, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr8:25776319-25776162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr8:27925669-27925826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr8:46944566-46944408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):67, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr8:59262539-59262382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr8:8518228-8518067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):95, 26

               
               
               Conread position:41-213
               
               
               Cow position:chr8:1153953-1153782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr8:1319399-1319582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr8:9735601-9735784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr8:26005243-26005059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):51, 23

               
               
               Conread position:41-219
               
               
               Cow position:chr8:4686747-4686921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-235
               
               
               Cow position:chr8:3785064-3785258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:41-278
               
               
               Cow position:chr8:25542856-25543103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):47, 39

               
               
               Conread position:41-420
               
               
               Cow position:chr8:16083682-16084090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:284
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-430
               
               
               Cow position:chr8:38607170-38606777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 40

               
               
               Conread position:41-432
               
               
               Cow position:chr8:24420179-24419775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 19

               
               
               Conread position:41-433
               
               
               Cow position:chr8:45161021-45160619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 37

               
               
               Conread position:43-168
               
               
               Cow position:chr8:9540137-9540015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:43-199
               
               
               Cow position:chr8:2886107-2886267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):94, 38

               
               
               Conread position:43-218
               
               
               Cow position:chr8:45693273-45693095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:44-184
               
               
               Cow position:chr8:3856657-3856519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:44-184
               
               
               Cow position:chr8:12449305-12449445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):92, 37

               
               
               Conread position:44-435
               
               
               Cow position:chr8:58187142-58186773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:279
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):172, 37

               
               
               Conread position:45-218
               
               
               Cow position:chr8:11056224-11056397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:47-171
               
               
               Cow position:chr8:38390728-38390852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-184
               
               
               Cow position:chr8:33588734-33588871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-197
               
               
               Cow position:chr8:1348875-1348725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-197
               
               
               Cow position:chr8:45797955-45797805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:47-197
               
               
               Cow position:chr8:47074629-47074778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):89, 20

               
               
               Conread position:49-238
               
               
               Cow position:chr8:36636181-36635993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):87, 32

               
               
               Conread position:52-432
               
               
               Cow position:chr8:44076522-44076147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 29

               
               
               Conread position:54-170
               
               
               Cow position:chr8:7160871-7160987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):82, 27

               
               
               Conread position:93-197
               
               
               Cow position:chr8:6683852-6683957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:235-398
               
               
               Cow position:chr8:1117452-1117615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 87

               
               
               Conread position:33-198
               
               
               Cow position:chr9:59455600-59455435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):103, 48

               
               
               Conread position:35-192
               
               
               Cow position:chr9:54361436-54361588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):101, 38

               
               
               Conread position:35-195
               
               
               Cow position:chr9:15072516-15072674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:35-196
               
               
               Cow position:chr9:34992394-34992554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):100, 6

               
               
               Conread position:35-197
               
               
               Cow position:chr9:31020823-31020984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:35-198
               
               
               Cow position:chr9:8968948-8968794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:35-198
               
               
               Cow position:chr9:28626039-28625878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:139
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr9:37063795-37063640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr9:37129536-37129382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:35-198
               
               
               Cow position:chr9:59443851-59444013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):83, 46

               
               
               Conread position:35-219
               
               
               Cow position:chr9:3156029-3156207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):100, 8

               
               
               Conread position:35-243
               
               
               Cow position:chr9:2500294-2500086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):101, 48

               
               
               Conread position:35-434
               
               
               Cow position:chr9:44817860-44818270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:36-196
               
               
               Cow position:chr9:3586371-3586530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):101, 45

               
               
               Conread position:41-144
               
               
               Cow position:chr9:1251969-1251866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-154
               
               
               Cow position:chr9:18067213-18067100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-158
               
               
               Cow position:chr9:37162800-37162683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-165
               
               
               Cow position:chr9:3548165-3548042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):95, 17

               
               
               Conread position:41-171
               
               
               Cow position:chr9:792507-792377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):80, 22

               
               
               Conread position:41-172
               
               
               Cow position:chr9:9013113-9013244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-172
               
               
               Cow position:chr9:27034707-27034837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-178
               
               
               Cow position:chr9:3566846-3566709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):95, 36

               
               
               Conread position:41-178
               
               
               Cow position:chr9:7002527-7002664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:41-178
               
               
               Cow position:chr9:47002195-47002332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-183
               
               
               Cow position:chr9:30826688-30826830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr9:780798-780655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr9:1076191-1076048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr9:5004005-5004148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr9:7062086-7061943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr9:25755217-25755074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr9:27934097-27934238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr9:29628740-29628598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr9:31807540-31807682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr9:32968975-32969116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr9:37971204-37971061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr9:42309689-42309832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):94, 39

               
               
               Conread position:41-184
               
               
               Cow position:chr9:42568878-42569020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-184
               
               
               Cow position:chr9:50789683-50789826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chr9:59174154-59174011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-191
               
               
               Cow position:chr9:16268378-16268528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-191
               
               
               Cow position:chr9:31194160-31194009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-196
               
               
               Cow position:chr9:3006239-3006084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr9:163497-163341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):95, 46

               
               
               Conread position:41-197
               
               
               Cow position:chr9:25023295-25023139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):95, 36

               
               
               Conread position:41-197
               
               
               Cow position:chr9:31064439-31064595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr9:40191670-40191514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-197
               
               
               Cow position:chr9:49177821-49177665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):96, 46

               
               
               Conread position:41-197
               
               
               Cow position:chr9:64018453-64018297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr9:2171065-2171220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 26

               
               
               Conread position:41-198
               
               
               Cow position:chr9:10315372-10315530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):52, 39

               
               
               Conread position:41-198
               
               
               Cow position:chr9:25483880-25484038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr9:30672374-30672531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:41-198
               
               
               Cow position:chr9:45873355-45873514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):93, 40

               
               
               Conread position:41-199
               
               
               Cow position:chr9:51182188-51182030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-200
               
               
               Cow position:chr9:131183-131020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-217
               
               
               Cow position:chr9:9055059-9054881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-217
               
               
               Cow position:chr9:59536101-59536279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr9:1995907-1995729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chr9:28677979-28678162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-219
               
               
               Cow position:chr9:3542813-3542993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-238
               
               
               Cow position:chr9:6051043-6050846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):72, 40

               
               
               Conread position:41-238
               
               
               Cow position:chr9:22653572-22653769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-271
               
               
               Cow position:chr9:59482666-59482436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-278
               
               
               Cow position:chr9:3355986-3355744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):87, 40

               
               
               Conread position:41-278
               
               
               Cow position:chr9:39992925-39993166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):172, 40

               
               
               Conread position:41-278
               
               
               Cow position:chr9:64118831-64119068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 92

               
               
               Conread position:41-280
               
               
               Cow position:chr9:1979985-1980222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:41-432
               
               
               Cow position:chr9:13477213-13476815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 41

               
               
               Conread position:42-199
               
               
               Cow position:chr9:36724509-36724668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):94, 39

               
               
               Conread position:43-219
               
               
               Cow position:chr9:18837017-18837196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 33

               
               
               Conread position:43-278
               
               
               Cow position:chr9:20309523-20309282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):92, 38

               
               
               Conread position:47-182
               
               
               Cow position:chr9:2488118-2487983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-184
               
               
               Cow position:chr9:4532503-4532640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-184
               
               
               Cow position:chr9:60278010-60277873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-212
               
               
               Cow position:chr9:1635554-1635718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):88, 34

               
               
               Conread position:47-218
               
               
               Cow position:chr9:34242585-34242410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-238
               
               
               Cow position:chr9:16175779-16175970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-238
               
               
               Cow position:chr9:18509791-18509600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-285
               
               
               Cow position:chr9:6974141-6974387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:48-199
               
               
               Cow position:chr9:17064370-17064215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:52-218
               
               
               Cow position:chr9:3803059-3803225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):84, 29

               
               
               Conread position:149-363
               
               
               Cow position:chr9:44794577-44794796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):54, 177

               
               
               Conread position:212-433
               
               
               Cow position:chr9:3803192-3803408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):174, 16

               
               
               Conread position:284-433
               
               
               Cow position:chr9:13222671-13222819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):111, 40

               
               
               Conread position:302-430
               
               
               Cow position:chr9:34721415-34721543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):93, 22

               
               
               Conread position:26-184
               
               
               Cow position:chrX:16699198-16699355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):110, 15

               
               
               Conread position:32-184
               
               
               Cow position:chrX:26767294-26767143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):106, 9

               
               
               Conread position:33-198
               
               
               Cow position:chrX:320373-320536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):103, 8

               
               
               Conread position:33-278
               
               
               Cow position:chrX:28549770-28550024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):102, 8

               
               
               Conread position:34-197
               
               
               Cow position:chrX:30055831-30055668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):102, 47

               
               
               Conread position:35-157
               
               
               Cow position:chrX:5834057-5833936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-171
               
               
               Cow position:chrX:14594660-14594797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):12, 47

               
               
               Conread position:35-178
               
               
               Cow position:chrX:30183988-30183845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-184
               
               
               Cow position:chrX:23455671-23455523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-191
               
               
               Cow position:chrX:16461584-16461733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):151, 6

               
               
               Conread position:35-191
               
               
               Cow position:chrX:26505091-26505247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):103, 6

               
               
               Conread position:35-192
               
               
               Cow position:chrX:40057158-40057001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chrX:6275711-6275548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):94, 6

               
               
               Conread position:35-198
               
               
               Cow position:chrX:13006718-13006556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chrX:20804033-20804196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):94, 6

               
               
               Conread position:35-198
               
               
               Cow position:chrX:21289584-21289422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:35-198
               
               
               Cow position:chrX:21602786-21602948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:139
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chrX:24122014-24121851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):100, 46

               
               
               Conread position:35-198
               
               
               Cow position:chrX:26628125-26627963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:139
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chrX:27494616-27494779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:35-198
               
               
               Cow position:chrX:28603551-28603390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chrX:30044238-30044076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:140
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-198
               
               
               Cow position:chrX:35017715-35017878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):94, 6

               
               
               Conread position:35-198
               
               
               Cow position:chrX:39719345-39719509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:35-210
               
               
               Cow position:chrX:24275577-24275751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):101, 13

               
               
               Conread position:35-243
               
               
               Cow position:chrX:970673-970881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):101, 45

               
               
               Conread position:35-258
               
               
               Cow position:chrX:29998697-29998915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):181, 46

               
               
               Conread position:35-278
               
               
               Cow position:chrX:12973322-12973072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):181, 44

               
               
               Conread position:35-304
               
               
               Cow position:chrX:35021171-35021449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-309
               
               
               Cow position:chrX:44386383-44386660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):101, 6

               
               
               Conread position:35-358
               
               
               Cow position:chrX:30142488-30142168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):16, 6

               
               
               Conread position:35-380
               
               
               Cow position:chrX:16017236-16016865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):78, 67

               
               
               Conread position:36-218
               
               
               Cow position:chrX:16275585-16275772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):100, 19

               
               
               Conread position:36-220
               
               
               Cow position:chrX:29950666-29950487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):151, 45

               
               
               Conread position:37-184
               
               
               Cow position:chrX:12280361-12280215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):99, 44

               
               
               Conread position:37-238
               
               
               Cow position:chrX:29872649-29872457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):148, 44

               
               
               Conread position:38-218
               
               
               Cow position:chrX:22619400-22619214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):98, 43

               
               
               Conread position:40-184
               
               
               Cow position:chrX:12353151-12353295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:40-198
               
               
               Cow position:chrX:21632676-21632518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:136
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:40-198
               
               
               Cow position:chrX:37142679-37142521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:41-154
               
               
               Cow position:chrX:2859889-2859776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-154
               
               
               Cow position:chrX:5395050-5394937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 43

               
               
               Conread position:41-155
               
               
               Cow position:chrX:32095054-32094937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):54, 40

               
               
               Conread position:41-160
               
               
               Cow position:chrX:29853654-29853535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):92, 40

               
               
               Conread position:41-170
               
               
               Cow position:chrX:13413204-13413075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-171
               
               
               Cow position:chrX:11663593-11663463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-171
               
               
               Cow position:chrX:23276934-23277064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-178
               
               
               Cow position:chrX:5299311-5299174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):95, 49

               
               
               Conread position:41-178
               
               
               Cow position:chrX:21829436-21829573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-178
               
               
               Cow position:chrX:23391687-23391550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-178
               
               
               Cow position:chrX:26527888-26528025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-182
               
               
               Cow position:chrX:12803952-12803811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-183
               
               
               Cow position:chrX:13076785-13076643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-183
               
               
               Cow position:chrX:13097359-13097217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-183
               
               
               Cow position:chrX:15179519-15179377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-183
               
               
               Cow position:chrX:27989867-27989727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chrX:1943132-1942989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chrX:2562945-2562802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chrX:5863310-5863453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chrX:7093510-7093653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chrX:9008250-9008393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):93, 42

               
               
               Conread position:41-184
               
               
               Cow position:chrX:10531646-10531503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chrX:11465090-11464947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chrX:13398208-13398065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chrX:14786960-14786817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chrX:15127330-15127187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chrX:17051006-17051150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chrX:18219309-18219452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:41-184
               
               
               Cow position:chrX:20360139-20359996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chrX:21222840-21222983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-184
               
               
               Cow position:chrX:22488093-22488236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:41-184
               
               
               Cow position:chrX:24089314-24089457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chrX:28562302-28562159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chrX:30179083-30178940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-184
               
               
               Cow position:chrX:30232196-30232053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chrX:30711267-30711404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:41-184
               
               
               Cow position:chrX:31493333-31493475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-184
               
               
               Cow position:chrX:35529772-35529917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):87, 42

               
               
               Conread position:41-184
               
               
               Cow position:chrX:37848926-37849069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-192
               
               
               Cow position:chrX:22582788-22582636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:41-196
               
               
               Cow position:chrX:5323811-5323656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):93, 42

               
               
               Conread position:41-196
               
               
               Cow position:chrX:9125271-9125426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-196
               
               
               Cow position:chrX:21340312-21340471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):68, 42

               
               
               Conread position:41-196
               
               
               Cow position:chrX:22778224-22778380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chrX:982550-982706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chrX:5283823-5283667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chrX:7481515-7481671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chrX:8454664-8454820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chrX:8670504-8670659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chrX:9192732-9192576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chrX:11433613-11433769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-197
               
               
               Cow position:chrX:12478633-12478788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chrX:16363212-16363056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chrX:17478610-17478454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chrX:21304614-21304458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-197
               
               
               Cow position:chrX:23047058-23047212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:41-197
               
               
               Cow position:chrX:39521819-39521975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-197
               
               
               Cow position:chrX:41411109-41410953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-198
               
               
               Cow position:chrX:12669952-12669795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-198
               
               
               Cow position:chrX:23019237-23019393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chrX:29285329-29285485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-198
               
               
               Cow position:chrX:29794202-29794047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:41-198
               
               
               Cow position:chrX:30056557-30056714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chrX:2603960-2604122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):7, 41

               
               
               Conread position:41-199
               
               
               Cow position:chrX:30010951-30011112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-199
               
               
               Cow position:chrX:37812074-37812236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-204
               
               
               Cow position:chrX:30173758-30173593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):95, 29

               
               
               Conread position:41-212
               
               
               Cow position:chrX:5840244-5840415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-213
               
               
               Cow position:chrX:20316143-20315972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-214
               
               
               Cow position:chrX:34988810-34988982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):78, 39

               
               
               Conread position:41-217
               
               
               Cow position:chrX:1546847-1547025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chrX:1833740-1833921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chrX:2101771-2101954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chrX:7030101-7030281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):95, 7

               
               
               Conread position:41-218
               
               
               Cow position:chrX:7751812-7751995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:41-218
               
               
               Cow position:chrX:18659870-18659694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):95, 34

               
               
               Conread position:41-218
               
               
               Cow position:chrX:22525692-22525510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chrX:28758729-28758546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chrX:29947619-29947802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chrX:31187333-31187151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-218
               
               
               Cow position:chrX:39564019-39563837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-225
               
               
               Cow position:chrX:20698384-20698201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):94, 24

               
               
               Conread position:41-227
               
               
               Cow position:chrX:8587006-8587196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-238
               
               
               Cow position:chrX:2482726-2482528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-238
               
               
               Cow position:chrX:18954610-18954416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:41-238
               
               
               Cow position:chrX:38146217-38146414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-239
               
               
               Cow position:chrX:23041211-23041013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-243
               
               
               Cow position:chrX:24484500-24484298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-254
               
               
               Cow position:chrX:22814294-22814502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:41-278
               
               
               Cow position:chrX:22130768-22130518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):63, 39

               
               
               Conread position:41-382
               
               
               Cow position:chrX:2536868-2536541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:41-382
               
               
               Cow position:chrX:31724938-31725289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:42-176
               
               
               Cow position:chrX:38575906-38575774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):94, 39

               
               
               Conread position:43-154
               
               
               Cow position:chrX:26400553-26400444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:43-184
               
               
               Cow position:chrX:27426402-27426265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:43-184
               
               
               Cow position:chrX:28584894-28585035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:43-192
               
               
               Cow position:chrX:6873157-6873010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):92, 38

               
               
               Conread position:43-192
               
               
               Cow position:chrX:16812679-16812531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):94, 38

               
               
               Conread position:43-218
               
               
               Cow position:chrX:28634502-28634322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:44-212
               
               
               Cow position:chrX:2143197-2143363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:47-165
               
               
               Cow position:chrX:15598848-15598966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):89, 31

               
               
               Conread position:47-198
               
               
               Cow position:chrX:32467170-32467321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:47-431
               
               
               Cow position:chrX:6283176-6282768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 34

               
               
               Conread position:48-184
               
               
               Cow position:chrX:26758686-26758550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:48-185
               
               
               Cow position:chrX:41851480-41851343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):88, 35

               
               
               Conread position:49-198
               
               
               Cow position:chrX:24136479-24136336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):88, 32

               
               
               Conread position:50-224
               
               
               Cow position:chrX:30369097-30368922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):85, 33

               
               
               Conread position:51-198
               
               
               Cow position:chrX:4795811-4795960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):67, 30

               
               
               Conread position:53-184
               
               
               Cow position:chrX:12654836-12654705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):83, 28

               
               
               Conread position:54-198
               
               
               Cow position:chrX:30990016-30990162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:60-432
               
               
               Cow position:chrX:21587122-21587510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 21

               
               
               Conread position:70-280
               
               
               Cow position:chrX:17668361-17668142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):66, 11

               
               
               Conread position:74-198
               
               
               Cow position:chrX:6909401-6909277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):62, 7

               
               
               Conread position:80-184
               
               
               Cow position:chrX:3376158-3376053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:231-391
               
               
               Cow position:chrX:27959851-27960007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 0