• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
rpigca0_001979.y1
        

               
Conread position:
               
1-225
               

               
Cow position:
               
chr1:46885542-46885317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
49, 161
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr1:56720789-56721015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
49, 162
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr1:86325924-86326159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
52, 151
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr1:30440886-30440649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
47, 107
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr1:74086099-74086343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 158
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr1:31190647-31190905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
57, 159
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:19517721-19517993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
48, 156
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr1:40603736-40603445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 141
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr1:28413127-28413420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 89
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr1:23634448-23634777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
47, 136
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr1:27494949-27494637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 157
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr1:68854644-68854350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 48
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:44836805-44837124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:52507910-52508227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 160
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:66242353-66242667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:74302405-74302718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:95018356-95018674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 44
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:98559624-98559307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 88
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr1:16337394-16337702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
49, 58
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:31238472-31238799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 159
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:41736158-41736485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
49, 26
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr1:44229927-44229596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 159
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr1:70380701-70381065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr1:7746653-7746264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 128
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr1:68253041-68252659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chr1:3440674-3440289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 162
               

               
Conread position:
               
1-379
               

               
Cow position:
               
chr1:12057542-12057928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 110
               

               
Conread position:
               
1-381
               

               
Cow position:
               
chr1:22227314-22226942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
47, 24
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr1:4645846-4646215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
52, 63
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chr1:97075791-97076197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 110
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr1:53424639-53424232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 52
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr1:42554707-42554296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 37
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr1:99837635-99838060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 163
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr1:61283131-61282712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr1:78291269-78290834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr1:56190707-56191151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr1:68282249-68281816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 134
               

               
Conread position:
               
1-438
               

               
Cow position:
               
chr1:31351927-31352364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 13
               

               
Conread position:
               
1-443
               

               
Cow position:
               
chr1:67290324-67289878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 8
               

               
Conread position:
               
1-453
               

               
Cow position:
               
chr1:3263698-3263236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 133
               

               
Conread position:
               
1-456
               

               
Cow position:
               
chr1:82880136-82879678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 90
               

               
Conread position:
               
1-460
               

               
Cow position:
               
chr1:22253772-22253314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 73
               

               
Conread position:
               
1-466
               

               
Cow position:
               
chr1:13250836-13251312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 13
               

               
Conread position:
               
1-469
               

               
Cow position:
               
chr1:52434733-52434256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 158
               

               
Conread position:
               
1-470
               

               
Cow position:
               
chr1:42053872-42054327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 138
               

               
Conread position:
               
1-473
               

               
Cow position:
               
chr1:71691265-71690783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 91
               

               
Conread position:
               
1-475
               

               
Cow position:
               
chr1:16116687-16117174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 161
               

               
Conread position:
               
1-484
               

               
Cow position:
               
chr1:3930628-3931124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-484
               

               
Cow position:
               
chr1:33547688-33548185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 160
               

               
Conread position:
               
1-485
               

               
Cow position:
               
chr1:6165689-6165199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 154
               

               
Conread position:
               
1-485
               

               
Cow position:
               
chr1:29038252-29037755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 74
               

               
Conread position:
               
1-486
               

               
Cow position:
               
chr1:91902731-91902233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 162
               

               
Conread position:
               
1-487
               

               
Cow position:
               
chr1:6196568-6197063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-487
               

               
Cow position:
               
chr1:21352614-21353104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 63
               

               
Conread position:
               
1-487
               

               
Cow position:
               
chr1:24595303-24594825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 166
               

               
Conread position:
               
1-487
               

               
Cow position:
               
chr1:50764844-50764371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
323, 63
               

               
Conread position:
               
1-487
               

               
Cow position:
               
chr1:56140684-56141140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 20
               

               
Conread position:
               
1-487
               

               
Cow position:
               
chr1:79590549-79590072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
304, 57
               

               
Conread position:
               
1-487
               

               
Cow position:
               
chr1:98656259-98656741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 88
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:3340376-3339878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 63
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:4337469-4336974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:5505650-5505149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:8828732-8828232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:9595233-9595734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 154
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:10726335-10725835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 162
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:14240355-14240856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 160
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:17938041-17938541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:21376851-21377347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 133
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:25553514-25553018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 158
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:26811363-26811861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:29429316-29428810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:30372603-30372116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 111
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:36645740-36646240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 163
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:38545004-38545512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 137
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:40964455-40964935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:42887791-42888273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 161
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:52354962-52355461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 107
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:52754823-52755322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 106
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:53308947-53309446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 163
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:53368894-53368424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 161
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:53520358-53519875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 85
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:54477513-54477013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 237
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:54933639-54933139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:55043552-55044051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 160
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:55158670-55159172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 160
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:55327533-55328021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:55780580-55780082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:56438722-56439202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 29
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:57396630-57397102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 89
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:57571544-57571042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 160
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:58192094-58192594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:58419374-58418887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 14
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:61097212-61096710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 162
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:61221130-61220645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 14
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:61746469-61746957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 149
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:65390273-65389770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 163
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:66491289-66490792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 160
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:67078115-67078613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:68145259-68145760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 162
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:68601918-68602419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:69406870-69406369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:69770527-69770030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 26
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:72812867-72812372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:72987167-72986669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 160
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:73761839-73762334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 30
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:76748683-76749177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 161
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:82370119-82369631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 44
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:85338570-85338090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 73
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:85776750-85777248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:86599299-86599804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:88179570-88179069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 13
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:88327771-88328269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 161
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:88677180-88676666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 107
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:89492529-89493019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 88
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:90393047-90393544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 157
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:95474198-95474690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:99571882-99572353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 63
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:100421296-100420809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 120
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:100591062-100591561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 158
               

               
Conread position:
               
2-291
               

               
Cow position:
               
chr1:2599993-2600276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 82
               

               
Conread position:
               
2-291
               

               
Cow position:
               
chr1:13133629-13133909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
51, 135
               

               
Conread position:
               
2-328
               

               
Cow position:
               
chr1:96298566-96298879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
45, 153
               

               
Conread position:
               
2-489
               

               
Cow position:
               
chr1:85529713-85530202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
48, 106
               

               
Conread position:
               
4-247
               

               
Cow position:
               
chr1:72069377-72069620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 156
               

               
Conread position:
               
4-344
               

               
Cow position:
               
chr1:56619237-56619576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 156
               

               
Conread position:
               
4-365
               

               
Cow position:
               
chr1:60280241-60279867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 159
               

               
Conread position:
               
4-444
               

               
Cow position:
               
chr1:26838653-26838211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 153
               

               
Conread position:
               
4-483
               

               
Cow position:
               
chr1:89484808-89484319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 164
               

               
Conread position:
               
4-487
               

               
Cow position:
               
chr1:57759618-57759128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 156
               

               
Conread position:
               
4-489
               

               
Cow position:
               
chr1:20798530-20798032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 135
               

               
Conread position:
               
4-489
               

               
Cow position:
               
chr1:47454272-47454766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 156
               

               
Conread position:
               
4-489
               

               
Cow position:
               
chr1:52054533-52054032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 160
               

               
Conread position:
               
4-489
               

               
Cow position:
               
chr1:64941843-64942325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 153
               

               
Conread position:
               
4-489
               

               
Cow position:
               
chr1:90913537-90913040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 104
               

               
Conread position:
               
4-489
               

               
Cow position:
               
chr1:100887798-100888296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 157
               

               
Conread position:
               
5-239
               

               
Cow position:
               
chr1:37420552-37420789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
13, 156
               

               
Conread position:
               
5-263
               

               
Cow position:
               
chr1:8514970-8514725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
50, 88
               

               
Conread position:
               
5-452
               

               
Cow position:
               
chr1:4375096-4375536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 34
               

               
Conread position:
               
5-484
               

               
Cow position:
               
chr1:61342004-61342490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 106
               

               
Conread position:
               
5-487
               

               
Cow position:
               
chr1:20377899-20378383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 10
               

               
Conread position:
               
5-489
               

               
Cow position:
               
chr1:20001301-20001781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 20
               

               
Conread position:
               
5-489
               

               
Cow position:
               
chr1:67831427-67831925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 160
               

               
Conread position:
               
5-489
               

               
Cow position:
               
chr1:94663361-94662864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 155
               

               
Conread position:
               
6-489
               

               
Cow position:
               
chr1:24440354-24440848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 155
               

               
Conread position:
               
6-489
               

               
Cow position:
               
chr1:58439590-58440086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 67
               

               
Conread position:
               
6-489
               

               
Cow position:
               
chr1:63602081-63602578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 154
               

               
Conread position:
               
8-243
               

               
Cow position:
               
chr1:92009311-92009078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
42, 154
               

               
Conread position:
               
8-302
               

               
Cow position:
               
chr1:87830946-87830661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
42, 126
               

               
Conread position:
               
8-322
               

               
Cow position:
               
chr1:95765681-95765985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
45, 106
               

               
Conread position:
               
8-400
               

               
Cow position:
               
chr1:29915857-29915474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
287, 42
               

               
Conread position:
               
8-460
               

               
Cow position:
               
chr1:41093428-41093890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
25, 88
               

               
Conread position:
               
8-468
               

               
Cow position:
               
chr1:71045209-71044742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 152
               

               
Conread position:
               
8-471
               

               
Cow position:
               
chr1:5013093-5013576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 152
               

               
Conread position:
               
8-485
               

               
Cow position:
               
chr1:16973408-16973897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 162
               

               
Conread position:
               
8-488
               

               
Cow position:
               
chr1:28677750-28677270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 148
               

               
Conread position:
               
8-489
               

               
Cow position:
               
chr1:22480960-22481449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 134
               

               
Conread position:
               
8-489
               

               
Cow position:
               
chr1:33442491-33442956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 16
               

               
Conread position:
               
8-489
               

               
Cow position:
               
chr1:33987102-33987614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 147
               

               
Conread position:
               
9-241
               

               
Cow position:
               
chr1:77867479-77867255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 23
               

               
Conread position:
               
9-243
               

               
Cow position:
               
chr1:37661184-37660951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 150
               

               
Conread position:
               
9-251
               

               
Cow position:
               
chr1:76020237-76020479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 151
               

               
Conread position:
               
9-266
               

               
Cow position:
               
chr1:72284858-72285118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
39, 154
               

               
Conread position:
               
9-278
               

               
Cow position:
               
chr1:22616208-22616469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
46, 151
               

               
Conread position:
               
9-294
               

               
Cow position:
               
chr1:10067763-10068047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 151
               

               
Conread position:
               
9-322
               

               
Cow position:
               
chr1:72114840-72114534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
41, 83
               

               
Conread position:
               
9-322
               

               
Cow position:
               
chr1:76700037-76700350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 139
               

               
Conread position:
               
9-487
               

               
Cow position:
               
chr1:98618367-98617885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 151
               

               
Conread position:
               
9-489
               

               
Cow position:
               
chr1:2764833-2764328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 68
               

               
Conread position:
               
9-489
               

               
Cow position:
               
chr1:23099333-23098849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 91
               

               
Conread position:
               
9-489
               

               
Cow position:
               
chr1:57120130-57120620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 112
               

               
Conread position:
               
9-489
               

               
Cow position:
               
chr1:58196750-58197227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 143
               

               
Conread position:
               
9-489
               

               
Cow position:
               
chr1:68812238-68812702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 44
               

               
Conread position:
               
9-489
               

               
Cow position:
               
chr1:68846021-68846497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 149
               

               
Conread position:
               
9-489
               

               
Cow position:
               
chr1:71135593-71135114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 151
               

               
Conread position:
               
9-489
               

               
Cow position:
               
chr1:71792633-71792141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 151
               

               
Conread position:
               
9-489
               

               
Cow position:
               
chr1:76617776-76618263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 76
               

               
Conread position:
               
10-267
               

               
Cow position:
               
chr1:96390596-96390835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
75, 35
               

               
Conread position:
               
10-299
               

               
Cow position:
               
chr1:6335020-6335308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
40, 144
               

               
Conread position:
               
10-308
               

               
Cow position:
               
chr1:64973109-64972814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
40, 27
               

               
Conread position:
               
10-312
               

               
Cow position:
               
chr1:80974528-80974826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
43, 105
               

               
Conread position:
               
10-322
               

               
Cow position:
               
chr1:73017768-73018076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
40, 150
               

               
Conread position:
               
10-323
               

               
Cow position:
               
chr1:90297605-90297307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
76, 23
               

               
Conread position:
               
10-489
               

               
Cow position:
               
chr1:22012260-22012749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 151
               

               
Conread position:
               
11-489
               

               
Cow position:
               
chr1:11873941-11874428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 155
               

               
Conread position:
               
11-489
               

               
Cow position:
               
chr1:26446847-26446367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 14
               

               
Conread position:
               
11-489
               

               
Cow position:
               
chr1:34857998-34858462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 75
               

               
Conread position:
               
13-467
               

               
Cow position:
               
chr1:96193453-96193904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 144
               

               
Conread position:
               
15-489
               

               
Cow position:
               
chr1:39479783-39480273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 145
               

               
Conread position:
               
18-489
               

               
Cow position:
               
chr1:14528771-14529247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 83
               

               
Conread position:
               
19-261
               

               
Cow position:
               
chr1:38687915-38687677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
36, 115
               

               
Conread position:
               
23-489
               

               
Cow position:
               
chr1:7837067-7837541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 164
               

               
Conread position:
               
23-489
               

               
Cow position:
               
chr1:77103674-77104151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 161
               

               
Conread position:
               
24-317
               

               
Cow position:
               
chr1:21132175-21132460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
24, 59
               

               
Conread position:
               
24-489
               

               
Cow position:
               
chr1:53372053-53371569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 62
               

               
Conread position:
               
24-489
               

               
Cow position:
               
chr1:70534760-70535252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 136
               

               
Conread position:
               
24-489
               

               
Cow position:
               
chr1:99917128-99916650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 136
               

               
Conread position:
               
26-489
               

               
Cow position:
               
chr1:40509559-40510049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 252
               

               
Conread position:
               
30-489
               

               
Cow position:
               
chr1:46821295-46820826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 44
               

               
Conread position:
               
30-489
               

               
Cow position:
               
chr1:53650325-53649863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 56
               

               
Conread position:
               
30-489
               

               
Cow position:
               
chr1:99117700-99117226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 104
               

               
Conread position:
               
32-489
               

               
Cow position:
               
chr1:93413183-93413647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
54, 117
               

               
Conread position:
               
33-322
               

               
Cow position:
               
chr1:100339920-100340196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
53, 103
               

               
Conread position:
               
34-489
               

               
Cow position:
               
chr1:101834062-101833608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 116
               

               
Conread position:
               
35-487
               

               
Cow position:
               
chr1:21113751-21114208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 83
               

               
Conread position:
               
36-227
               

               
Cow position:
               
chr1:72462565-72462378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
50, 119
               

               
Conread position:
               
46-460
               

               
Cow position:
               
chr1:68951061-68950647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 105
               

               
Conread position:
               
46-489
               

               
Cow position:
               
chr1:13718178-13718623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 56
               

               
Conread position:
               
48-483
               

               
Cow position:
               
chr1:63240345-63239911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 28
               

               
Conread position:
               
49-474
               

               
Cow position:
               
chr1:3012159-3012567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
37, 106
               

               
Conread position:
               
49-484
               

               
Cow position:
               
chr1:24581050-24580622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 67
               

               
Conread position:
               
49-489
               

               
Cow position:
               
chr1:25052930-25053376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 69
               

               
Conread position:
               
49-489
               

               
Cow position:
               
chr1:52371630-52371183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
49-489
               

               
Cow position:
               
chr1:57946591-57946155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 106
               

               
Conread position:
               
50-433
               

               
Cow position:
               
chr1:19884247-19884635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
36, 53
               

               
Conread position:
               
51-485
               

               
Cow position:
               
chr1:12468142-12468575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 70
               

               
Conread position:
               
52-378
               

               
Cow position:
               
chr1:24202494-24202824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
126, 29
               

               
Conread position:
               
53-308
               

               
Cow position:
               
chr1:39702155-39701909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
33, 79
               

               
Conread position:
               
53-310
               

               
Cow position:
               
chr1:86574481-86574233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 98
               

               
Conread position:
               
53-379
               

               
Cow position:
               
chr1:15463505-15463175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 71
               

               
Conread position:
               
53-489
               

               
Cow position:
               
chr1:85323860-85323441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 97
               

               
Conread position:
               
54-489
               

               
Cow position:
               
chr1:100451025-100451456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 21
               

               
Conread position:
               
55-489
               

               
Cow position:
               
chr1:37323631-37324057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 33
               

               
Conread position:
               
58-396
               

               
Cow position:
               
chr1:6765452-6765793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 96
               

               
Conread position:
               
58-489
               

               
Cow position:
               
chr1:19145511-19145956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 93
               

               
Conread position:
               
67-316
               

               
Cow position:
               
chr1:58780038-58779807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
19, 88
               

               
Conread position:
               
72-225
               

               
Cow position:
               
chr1:81302770-81302622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
14, 83
               

               
Conread position:
               
72-290
               

               
Cow position:
               
chr1:100435943-100435738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
14, 83
               

               
Conread position:
               
72-322
               

               
Cow position:
               
chr1:15049435-15049203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
72-489
               

               
Cow position:
               
chr1:30079576-30079154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 60
               

               
Conread position:
               
72-489
               

               
Cow position:
               
chr1:56746520-56746095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 83
               

               
Conread position:
               
72-489
               

               
Cow position:
               
chr1:67913714-67913284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 32
               

               
Conread position:
               
72-489
               

               
Cow position:
               
chr1:73063706-73064124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 34
               

               
Conread position:
               
77-422
               

               
Cow position:
               
chr1:90622602-90622946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
79-322
               

               
Cow position:
               
chr1:9438675-9438897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
83-322
               

               
Cow position:
               
chr1:101801766-101801538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
83-489
               

               
Cow position:
               
chr1:72139814-72139405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 44
               

               
Conread position:
               
84-446
               

               
Cow position:
               
chr1:42740318-42739950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 69
               

               
Conread position:
               
84-489
               

               
Cow position:
               
chr1:61204006-61203595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 69
               

               
Conread position:
               
85-396
               

               
Cow position:
               
chr1:98797548-98797853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
238, 69
               

               
Conread position:
               
85-489
               

               
Cow position:
               
chr1:22727942-22727503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 68
               

               
Conread position:
               
99-321
               

               
Cow position:
               
chr1:24921911-24922114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
107-291
               

               
Cow position:
               
chr1:11728333-11728162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
108-347
               

               
Cow position:
               
chr1:99792022-99791786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
122, 45
               

               
Conread position:
               
113-322
               

               
Cow position:
               
chr1:19793292-19793097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
26, 43
               

               
Conread position:
               
113-489
               

               
Cow position:
               
chr1:70051812-70051450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 6
               

               
Conread position:
               
118-489
               

               
Cow position:
               
chr1:55145649-55145256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 35
               

               
Conread position:
               
119-489
               

               
Cow position:
               
chr1:3382732-3383106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 35
               

               
Conread position:
               
128-482
               

               
Cow position:
               
chr1:70387751-70388098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
176, 25
               

               
Conread position:
               
148-489
               

               
Cow position:
               
chr1:31341848-31342188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 27
               

               
Conread position:
               
154-489
               

               
Cow position:
               
chr1:38279183-38279529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 26
               

               
Conread position:
               
156-465
               

               
Cow position:
               
chr1:37541757-37542070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
138, 24
               

               
Conread position:
               
156-484
               

               
Cow position:
               
chr1:43448958-43449296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 17
               

               
Conread position:
               
162-489
               

               
Cow position:
               
chr1:30035161-30034838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
166, 18
               

               
Conread position:
               
178-489
               

               
Cow position:
               
chr1:99581921-99582246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 88
               

               
Conread position:
               
180-489
               

               
Cow position:
               
chr1:11771248-11771579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
181-489
               

               
Cow position:
               
chr1:40532352-40532659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
127, 85
               

               
Conread position:
               
182-489
               

               
Cow position:
               
chr1:57958025-57958352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 89
               

               
Conread position:
               
184-489
               

               
Cow position:
               
chr1:43567979-43568299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
35, 92
               

               
Conread position:
               
185-489
               

               
Cow position:
               
chr1:61727558-61727866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 167
               

               
Conread position:
               
187-489
               

               
Cow position:
               
chr1:72864471-72864160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
141, 79
               

               
Conread position:
               
190-484
               

               
Cow position:
               
chr1:16573402-16573700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
109, 76
               

               
Conread position:
               
196-489
               

               
Cow position:
               
chr1:29656706-29656397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 55
               

               
Conread position:
               
206-489
               

               
Cow position:
               
chr1:12803577-12803303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
232-489
               

               
Cow position:
               
chr1:49132692-49132962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 38
               

               
Conread position:
               
255-488
               

               
Cow position:
               
chr1:64594852-64595098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
42, 15
               

               
Conread position:
               
314-485
               

               
Cow position:
               
chr1:12872069-12872240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
73, 56
               

               
Conread position:
               
314-489
               

               
Cow position:
               
chr1:18486791-18486966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
72, 43
               

               
Conread position:
               
314-489
               

               
Cow position:
               
chr1:31191039-31191213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 23
               

               
Conread position:
               
314-489
               

               
Cow position:
               
chr1:84284028-84284203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
72, 43
               

               
Conread position:
               
321-467
               

               
Cow position:
               
chr1:28413846-28413991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 42
               

               
Conread position:
               
321-489
               

               
Cow position:
               
chr1:21785860-21785694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 44
               

               
Conread position:
               
321-489
               

               
Cow position:
               
chr1:81860131-81860299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
69, 36
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr10:31116326-31116096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
47, 14
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr10:29278875-29278652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
50, 135
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr10:30456438-30456671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
43, 94
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr10:42347000-42347248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr10:39139398-39139155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
47, 160
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr10:16929949-16929691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr10:20506405-20506146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 160
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr10:14936799-14937054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
42, 79
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr10:5150759-5150500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 81
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr10:17836460-17836724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
49, 111
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr10:873924-873627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 130
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr10:11221141-11220856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 49
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr10:22471740-22471443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr10:29426686-29426387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 154
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr10:8093898-8094214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 121
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr10:24785510-24785202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 130
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr10:53075433-53075123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 39
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr10:9526966-9527283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 81
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr10:10859810-10860127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 19
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr10:24022862-24023169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
49, 37
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr10:24743700-24743386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 31
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr10:33665263-33664934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 261
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr10:51836740-51837058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 160
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr10:58265135-58265444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chr10:59676215-59676551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 138
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr10:49432837-49432500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 85
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr10:54141358-54141009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 115
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr10:32174164-32173796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 126
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr10:10082345-10082740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 160
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chr10:63626866-63626471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 134
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr10:43489364-43488938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr10:14963827-14964263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 163
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr10:43288647-43289073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 40
               

               
Conread position:
               
1-424
               

               
Cow position:
               
chr10:3998340-3997924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 13
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr10:31182444-31182872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr10:36465754-36466178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
49, 41
               

               
Conread position:
               
1-447
               

               
Cow position:
               
chr10:25259444-25258999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 160
               

               
Conread position:
               
1-454
               

               
Cow position:
               
chr10:38843859-38843393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 140
               

               
Conread position:
               
1-457
               

               
Cow position:
               
chr10:38013781-38013314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 161
               

               
Conread position:
               
1-467
               

               
Cow position:
               
chr10:53157693-53158163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 47
               

               
Conread position:
               
1-477
               

               
Cow position:
               
chr10:130650-130168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 146
               

               
Conread position:
               
1-483
               

               
Cow position:
               
chr10:16646568-16647068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 26
               

               
Conread position:
               
1-484
               

               
Cow position:
               
chr10:22320955-22320464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 8
               

               
Conread position:
               
1-484
               

               
Cow position:
               
chr10:48741743-48742230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 130
               

               
Conread position:
               
1-485
               

               
Cow position:
               
chr10:37041731-37041245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 14
               

               
Conread position:
               
1-485
               

               
Cow position:
               
chr10:37908412-37908910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 162
               

               
Conread position:
               
1-487
               

               
Cow position:
               
chr10:22528480-22528984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 14
               

               
Conread position:
               
1-487
               

               
Cow position:
               
chr10:50110477-50110969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 155
               

               
Conread position:
               
1-488
               

               
Cow position:
               
chr10:26922552-26923052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 159
               

               
Conread position:
               
1-488
               

               
Cow position:
               
chr10:29174959-29174461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 75
               

               
Conread position:
               
1-488
               

               
Cow position:
               
chr10:60960351-60959845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 158
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:325026-325528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 113
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:1720116-1720631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 117
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:2736752-2736251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:6539514-6539019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 160
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:7278368-7278865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:8459943-8459462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 31
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:9681437-9681932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:10148052-10147570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 157
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:10585857-10585362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:14332105-14332605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 158
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:15888712-15888218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 163
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:19522416-19522916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:21709493-21709999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 169
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:22105215-22104716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 110
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:23412782-23412282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 34
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:23648558-23649057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 157
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:23913119-23913618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:23935462-23934987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 68
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:25005993-25005502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 107
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:28775562-28775061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 78
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:31374683-31375180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 136
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:32700687-32700188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 162
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:32704499-32703998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 161
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:36878719-36879220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 162
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:37773616-37773115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 164
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:38154879-38154384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 87
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:39441900-39441405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:40376725-40376243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:40737429-40736918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:42636399-42635927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 91
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:44765416-44764924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 138
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:44786025-44785541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:44866611-44866110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 160
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:45730273-45730759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 63
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:46226557-46226060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 160
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:47773157-47772653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 14
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:48384499-48384989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 127
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:51559137-51558636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:54376211-54376698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 63
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:59840045-59840539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:64304303-64304790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 156
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr10:66495665-66496166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 162
               

               
Conread position:
               
2-488
               

               
Cow position:
               
chr10:38782170-38782659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
28, 131
               

               
Conread position:
               
4-322
               

               
Cow position:
               
chr10:34660795-34661102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 16
               

               
Conread position:
               
4-322
               

               
Cow position:
               
chr10:60936380-60936067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 62
               

               
Conread position:
               
4-322
               

               
Cow position:
               
chr10:61922853-61923169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 81
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chr10:58690348-58689980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
46, 84
               

               
Conread position:
               
4-461
               

               
Cow position:
               
chr10:51863637-51864075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 23
               

               
Conread position:
               
4-475
               

               
Cow position:
               
chr10:42644269-42643799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 31
               

               
Conread position:
               
4-487
               

               
Cow position:
               
chr10:19894730-19894248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 157
               

               
Conread position:
               
4-489
               

               
Cow position:
               
chr10:19541682-19542173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
60, 113
               

               
Conread position:
               
4-489
               

               
Cow position:
               
chr10:30720429-30719931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 162
               

               
Conread position:
               
4-489
               

               
Cow position:
               
chr10:32282749-32282250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 157
               

               
Conread position:
               
4-489
               

               
Cow position:
               
chr10:63881976-63881474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 156
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chr10:7095348-7095115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 9
               

               
Conread position:
               
5-268
               

               
Cow position:
               
chr10:54799171-54798907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 156
               

               
Conread position:
               
5-293
               

               
Cow position:
               
chr10:29933103-29933382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 37
               

               
Conread position:
               
5-322
               

               
Cow position:
               
chr10:35246347-35246663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 155
               

               
Conread position:
               
5-394
               

               
Cow position:
               
chr10:6253077-6253473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 101
               

               
Conread position:
               
5-463
               

               
Cow position:
               
chr10:25188-24728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 36
               

               
Conread position:
               
5-489
               

               
Cow position:
               
chr10:3984841-3984348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 155
               

               
Conread position:
               
5-489
               

               
Cow position:
               
chr10:20398626-20398149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 149
               

               
Conread position:
               
6-487
               

               
Cow position:
               
chr10:38941852-38941356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 147
               

               
Conread position:
               
6-489
               

               
Cow position:
               
chr10:34666187-34666676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 47
               

               
Conread position:
               
6-489
               

               
Cow position:
               
chr10:46195213-46194709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 154
               

               
Conread position:
               
7-487
               

               
Cow position:
               
chr10:21081559-21081074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 84
               

               
Conread position:
               
7-489
               

               
Cow position:
               
chr10:20372703-20373195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 104
               

               
Conread position:
               
8-242
               

               
Cow position:
               
chr10:28949490-28949274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
8-292
               

               
Cow position:
               
chr10:6567616-6567335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
42, 137
               

               
Conread position:
               
8-300
               

               
Cow position:
               
chr10:10753707-10753994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
38, 146
               

               
Conread position:
               
8-348
               

               
Cow position:
               
chr10:4343437-4343773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
42, 153
               

               
Conread position:
               
8-366
               

               
Cow position:
               
chr10:46378359-46378723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 133
               

               
Conread position:
               
8-489
               

               
Cow position:
               
chr10:20516665-20516148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 127
               

               
Conread position:
               
8-489
               

               
Cow position:
               
chr10:22978436-22978923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 57
               

               
Conread position:
               
8-489
               

               
Cow position:
               
chr10:42754766-42754295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 81
               

               
Conread position:
               
9-253
               

               
Cow position:
               
chr10:53908297-53908541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 151
               

               
Conread position:
               
9-308
               

               
Cow position:
               
chr10:45104219-45103928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
41, 80
               

               
Conread position:
               
9-344
               

               
Cow position:
               
chr10:15292687-15292359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
9-345
               

               
Cow position:
               
chr10:52288161-52288488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
44, 75
               

               
Conread position:
               
9-437
               

               
Cow position:
               
chr10:9451947-9452367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 42
               

               
Conread position:
               
9-437
               

               
Cow position:
               
chr10:9798790-9799229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 13
               

               
Conread position:
               
9-469
               

               
Cow position:
               
chr10:31669995-31669521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 151
               

               
Conread position:
               
9-485
               

               
Cow position:
               
chr10:2516761-2516276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 103
               

               
Conread position:
               
9-487
               

               
Cow position:
               
chr10:29628541-29629030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 151
               

               
Conread position:
               
9-487
               

               
Cow position:
               
chr10:56834690-56834214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 151
               

               
Conread position:
               
9-489
               

               
Cow position:
               
chr10:326818-326326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 151
               

               
Conread position:
               
9-489
               

               
Cow position:
               
chr10:6542199-6541709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
42, 151
               

               
Conread position:
               
9-489
               

               
Cow position:
               
chr10:28236229-28235740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 150
               

               
Conread position:
               
9-489
               

               
Cow position:
               
chr10:37788276-37788769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 150
               

               
Conread position:
               
10-242
               

               
Cow position:
               
chr10:45669820-45670050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
43, 136
               

               
Conread position:
               
10-487
               

               
Cow position:
               
chr10:21656839-21656361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 150
               

               
Conread position:
               
11-489
               

               
Cow position:
               
chr10:58937921-58938407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 5
               

               
Conread position:
               
14-322
               

               
Cow position:
               
chr10:37755130-37754824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
36, 66
               

               
Conread position:
               
21-293
               

               
Cow position:
               
chr10:3999512-3999242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 85
               

               
Conread position:
               
23-489
               

               
Cow position:
               
chr10:56687378-56687826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 50
               

               
Conread position:
               
24-258
               

               
Cow position:
               
chr10:63776791-63776557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
26, 136
               

               
Conread position:
               
24-450
               

               
Cow position:
               
chr10:29069513-29069077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 136
               

               
Conread position:
               
24-467
               

               
Cow position:
               
chr10:7737211-7736750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 136
               

               
Conread position:
               
24-489
               

               
Cow position:
               
chr10:15619669-15620151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
26, 68
               

               
Conread position:
               
25-322
               

               
Cow position:
               
chr10:3114669-3114376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
25, 136
               

               
Conread position:
               
26-295
               

               
Cow position:
               
chr10:35308556-35308292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
59, 27
               

               
Conread position:
               
27-382
               

               
Cow position:
               
chr10:60232738-60232386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
23, 107
               

               
Conread position:
               
33-326
               

               
Cow position:
               
chr10:6012628-6012924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
18, 127
               

               
Conread position:
               
33-489
               

               
Cow position:
               
chr10:11623024-11623490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 127
               

               
Conread position:
               
46-292
               

               
Cow position:
               
chr10:9569177-9569417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
40, 109
               

               
Conread position:
               
49-489
               

               
Cow position:
               
chr10:40643702-40643254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 87
               

               
Conread position:
               
52-412
               

               
Cow position:
               
chr10:66875706-66876062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
34, 19
               

               
Conread position:
               
53-453
               

               
Cow position:
               
chr10:2856485-2856090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
176, 30
               

               
Conread position:
               
53-487
               

               
Cow position:
               
chr10:9445595-9446045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 19
               

               
Conread position:
               
54-460
               

               
Cow position:
               
chr10:46491649-46492062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 101
               

               
Conread position:
               
55-489
               

               
Cow position:
               
chr10:63776506-63776064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 100
               

               
Conread position:
               
56-243
               

               
Cow position:
               
chr10:11216296-11216474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
29, 12
               

               
Conread position:
               
70-433
               

               
Cow position:
               
chr10:40148504-40148864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 85
               

               
Conread position:
               
72-389
               

               
Cow position:
               
chr10:41406327-41405998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
14, 88
               

               
Conread position:
               
72-489
               

               
Cow position:
               
chr10:2116788-2117206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 83
               

               
Conread position:
               
73-489
               

               
Cow position:
               
chr10:27120254-27120673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 82
               

               
Conread position:
               
75-489
               

               
Cow position:
               
chr10:57986040-57986460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 11
               

               
Conread position:
               
79-489
               

               
Cow position:
               
chr10:50016741-50017128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
262, 5
               

               
Conread position:
               
83-293
               

               
Cow position:
               
chr10:14640293-14640489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
84-387
               

               
Cow position:
               
chr10:39821233-39821537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
16, 70
               

               
Conread position:
               
84-489
               

               
Cow position:
               
chr10:19140975-19141373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 20
               

               
Conread position:
               
84-489
               

               
Cow position:
               
chr10:55098309-55098708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 33
               

               
Conread position:
               
86-477
               

               
Cow position:
               
chr10:39774955-39775334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 67
               

               
Conread position:
               
90-489
               

               
Cow position:
               
chr10:55011448-55011042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 62
               

               
Conread position:
               
93-293
               

               
Cow position:
               
chr10:69531254-69531067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
104-489
               

               
Cow position:
               
chr10:68095444-68095833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 7
               

               
Conread position:
               
108-466
               

               
Cow position:
               
chr10:60354759-60354397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 45
               

               
Conread position:
               
116-397
               

               
Cow position:
               
chr10:67105679-67105960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
207, 18
               

               
Conread position:
               
119-357
               

               
Cow position:
               
chr10:2527090-2526848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
159, 34
               

               
Conread position:
               
119-489
               

               
Cow position:
               
chr10:24751521-24751152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 34
               

               
Conread position:
               
125-326
               

               
Cow position:
               
chr10:63046196-63046005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
148-483
               

               
Cow position:
               
chr10:55036997-55036658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 15
               

               
Conread position:
               
157-489
               

               
Cow position:
               
chr10:12314132-12313798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
170, 13
               

               
Conread position:
               
160-489
               

               
Cow position:
               
chr10:3317322-3316997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
163, 10
               

               
Conread position:
               
173-489
               

               
Cow position:
               
chr10:48171095-48170758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
120, 201
               

               
Conread position:
               
174-489
               

               
Cow position:
               
chr10:25341670-25341345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 92
               

               
Conread position:
               
177-489
               

               
Cow position:
               
chr10:38542160-38542483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 183
               

               
Conread position:
               
178-475
               

               
Cow position:
               
chr10:60723425-60723729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
126, 84
               

               
Conread position:
               
180-356
               

               
Cow position:
               
chr10:60238455-60238634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
63, 87
               

               
Conread position:
               
180-429
               

               
Cow position:
               
chr10:31005758-31006019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
138, 90
               

               
Conread position:
               
180-489
               

               
Cow position:
               
chr10:29106268-29106585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 90
               

               
Conread position:
               
180-489
               

               
Cow position:
               
chr10:32560671-32560354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
65, 71
               

               
Conread position:
               
181-483
               

               
Cow position:
               
chr10:9580518-9580832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 62
               

               
Conread position:
               
181-489
               

               
Cow position:
               
chr10:18041513-18041217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
203, 62
               

               
Conread position:
               
182-489
               

               
Cow position:
               
chr10:28339888-28339573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
123, 84
               

               
Conread position:
               
184-370
               

               
Cow position:
               
chr10:22617482-22617661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
187-461
               

               
Cow position:
               
chr10:25866143-25866430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
108, 83
               

               
Conread position:
               
188-325
               

               
Cow position:
               
chr10:24308630-24308771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
107, 84
               

               
Conread position:
               
197-489
               

               
Cow position:
               
chr10:46172674-46172955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 69
               

               
Conread position:
               
201-486
               

               
Cow position:
               
chr10:8220040-8219748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
127, 69
               

               
Conread position:
               
203-454
               

               
Cow position:
               
chr10:16091617-16091353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
121, 63
               

               
Conread position:
               
206-489
               

               
Cow position:
               
chr10:10047011-10047304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
74, 64
               

               
Conread position:
               
210-489
               

               
Cow position:
               
chr10:60029249-60028959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
83, 154
               

               
Conread position:
               
232-486
               

               
Cow position:
               
chr10:18885742-18886009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
71, 38
               

               
Conread position:
               
233-489
               

               
Cow position:
               
chr10:49914254-49914523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 37
               

               
Conread position:
               
234-486
               

               
Cow position:
               
chr10:20380484-20380749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 36
               

               
Conread position:
               
248-483
               

               
Cow position:
               
chr10:17491916-17492159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
6, 23
               

               
Conread position:
               
292-489
               

               
Cow position:
               
chr10:42460503-42460696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
150, 66
               

               
Conread position:
               
314-487
               

               
Cow position:
               
chr10:31465693-31465520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
76, 43
               

               
Conread position:
               
314-489
               

               
Cow position:
               
chr10:16929574-16929399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
72, 43
               

               
Conread position:
               
314-489
               

               
Cow position:
               
chr10:61312895-61312720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
76, 45
               

               
Conread position:
               
321-483
               

               
Cow position:
               
chr10:42213863-42213704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
59, 37
               

               
Conread position:
               
321-489
               

               
Cow position:
               
chr10:19069194-19069026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
65, 36
               

               
Conread position:
               
328-489
               

               
Cow position:
               
chr10:48256726-48256891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
62, 31
               

               
Conread position:
               
340-489
               

               
Cow position:
               
chr10:24094378-24094232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr11:19112909-19113139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
52, 98
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr11:44031427-44031177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 144
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr11:16757722-16757976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr11:13061788-13062043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
49, 23
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr11:84796521-84796794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
49, 38
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr11:37159928-37159634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
47, 159
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr11:34841773-34842078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr11:7325551-7325241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
46, 119
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr11:21820030-21820343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 118
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr11:40133425-40133739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr11:75195769-75196087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 151
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr11:81337541-81337847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
49, 96
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chr11:51478000-51477624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 105
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chr11:31236030-31236438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 157
               

               
Conread position:
               
1-445
               

               
Cow position:
               
chr11:8246559-8246110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 160
               
1-453UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr11:30194843-30194395 (view  custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
45, 121
               
1-460UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr11:33601264-33601737 (view  custom track)

               
               
               
Alignm length:
483

               
               
               
Alignm identity:
353

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
49, 158
1-484UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr11:17279222-17279713 (view  custom track)

               
               
               
Alignm length:
498

               
               
               
Alignm identity:
354

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
48, 134

               
               
               Conread position:1-484
               
               
               Cow position:chr11:21471998-21471506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 120

               
               
               Conread position:1-485
               
               
               Cow position:chr11:1667992-1667502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 88

               
               
               Conread position:1-486
               
               
               Cow position:chr11:28382035-28381548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:328
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):50, 90

               
               
               Conread position:1-487
               
               
               Cow position:chr11:2835636-2835140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 140

               
               
               Conread position:1-487
               
               
               Cow position:chr11:7705046-7704572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 47

               
               
               Conread position:1-487
               
               
               Cow position:chr11:58399694-58399208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 118

               
               
               Conread position:1-487
               
               
               Cow position:chr11:73512996-73513496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 75

               
               
               Conread position:1-489
               
               
               Cow position:chr11:1492498-1492974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 110

               
               
               Conread position:1-489
               
               
               Cow position:chr11:1504620-1505123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 105

               
               
               Conread position:1-489
               
               
               Cow position:chr11:3238677-3238175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr11:4023983-4024475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-489
               
               
               Cow position:chr11:4675246-4675741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 41

               
               
               Conread position:1-489
               
               
               Cow position:chr11:9388710-9388211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 99

               
               
               Conread position:1-489
               
               
               Cow position:chr11:12010444-12009953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 29

               
               
               Conread position:1-489
               
               
               Cow position:chr11:12316687-12317196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr11:12353517-12354018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr11:14259590-14260083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 155

               
               
               Conread position:1-489
               
               
               Cow position:chr11:17781668-17782153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr11:18920223-18920712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr11:19099113-19099611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 149

               
               
               Conread position:1-489
               
               
               Cow position:chr11:19507708-19507204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 165

               
               
               Conread position:1-489
               
               
               Cow position:chr11:21852869-21853377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr11:23495127-23494625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr11:23883706-23883221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 52

               
               
               Conread position:1-489
               
               
               Cow position:chr11:25565122-25564627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr11:25760119-25759627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 164

               
               
               Conread position:1-489
               
               
               Cow position:chr11:26550851-26550351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr11:27660612-27660108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr11:27938967-27938484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr11:30164925-30164446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 63

               
               
               Conread position:1-489
               
               
               Cow position:chr11:31836559-31836064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr11:31866024-31865507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 191

               
               
               Conread position:1-489
               
               
               Cow position:chr11:40458548-40458049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 66

               
               
               Conread position:1-489
               
               
               Cow position:chr11:41093491-41093988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 81

               
               
               Conread position:1-489
               
               
               Cow position:chr11:41167319-41167820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr11:42358556-42358076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 154

               
               
               Conread position:1-489
               
               
               Cow position:chr11:43361364-43361845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 143

               
               
               Conread position:1-489
               
               
               Cow position:chr11:44255446-44254948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr11:44915312-44915811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 8

               
               
               Conread position:1-489
               
               
               Cow position:chr11:46780695-46781194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr11:47972493-47972978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 63

               
               
               Conread position:1-489
               
               
               Cow position:chr11:49935373-49935874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr11:56651854-56652365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 104

               
               
               Conread position:1-489
               
               
               Cow position:chr11:65282384-65281893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 158

               
               
               Conread position:1-489
               
               
               Cow position:chr11:67295631-67296133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 161

               
               
               Conread position:1-489
               
               
               Cow position:chr11:67599958-67599453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 78

               
               
               Conread position:1-489
               
               
               Cow position:chr11:68130761-68130285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:1-489
               
               
               Cow position:chr11:71332874-71332375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr11:77745832-77746332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 117

               
               
               Conread position:1-489
               
               
               Cow position:chr11:84774537-84774039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:2-302
               
               
               Cow position:chr11:70715911-70716213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):51, 151

               
               
               Conread position:2-322
               
               
               Cow position:chr11:54361366-54361053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):51, 154

               
               
               Conread position:2-489
               
               
               Cow position:chr11:19490906-19490412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:335
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):191, 74

               
               
               Conread position:3-239
               
               
               Cow position:chr11:50198321-50198550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):48, 158

               
               
               Conread position:3-489
               
               
               Cow position:chr11:45651544-45652039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:330
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):47, 143

               
               
               Conread position:4-379
               
               
               Cow position:chr11:71078797-71078415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-394
               
               
               Cow position:chr11:37068872-37069278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 155

               
               
               Conread position:4-487
               
               
               Cow position:chr11:44107050-44106559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 96

               
               
               Conread position:4-489
               
               
               Cow position:chr11:7323280-7322791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:326
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):82, 97

               
               
               Conread position:4-489
               
               
               Cow position:chr11:74929179-74928677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 155

               
               
               Conread position:5-303
               
               
               Cow position:chr11:24601375-24601074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 158

               
               
               Conread position:5-316
               
               
               Cow position:chr11:64047744-64047449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):72, 40

               
               
               Conread position:5-439
               
               
               Cow position:chr11:17037163-17037590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 120

               
               
               Conread position:5-489
               
               
               Cow position:chr11:10851485-10850988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 156

               
               
               Conread position:5-489
               
               
               Cow position:chr11:11991370-11990871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 161

               
               
               Conread position:5-489
               
               
               Cow position:chr11:44153712-44154204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 155

               
               
               Conread position:5-489
               
               
               Cow position:chr11:49171133-49171624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 140

               
               
               Conread position:5-489
               
               
               Cow position:chr11:59872176-59871690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 84

               
               
               Conread position:6-489
               
               
               Cow position:chr11:18105322-18105813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 19

               
               
               Conread position:7-292
               
               
               Cow position:chr11:77746719-77747005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):19, 155

               
               
               Conread position:7-475
               
               
               Cow position:chr11:15995869-15995382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 26

               
               
               Conread position:8-241
               
               
               Cow position:chr11:41033267-41033034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):45, 24

               
               
               Conread position:8-269
               
               
               Cow position:chr11:46246857-46246590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):39, 27

               
               
               Conread position:8-285
               
               
               Cow position:chr11:80471575-80471843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 14

               
               
               Conread position:8-326
               
               
               Cow position:chr11:44938239-44937926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):36, 155

               
               
               Conread position:8-466
               
               
               Cow position:chr11:64844422-64843969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:293
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):39, 68

               
               
               Conread position:8-489
               
               
               Cow position:chr11:8829432-8829895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):315, 40

               
               
               Conread position:8-489
               
               
               Cow position:chr11:30057567-30057081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 153

               
               
               Conread position:8-489
               
               
               Cow position:chr11:41106026-41106513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 156

               
               
               Conread position:8-489
               
               
               Cow position:chr11:69402855-69403347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 150

               
               
               Conread position:9-243
               
               
               Cow position:chr11:27906682-27906463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):77, 49

               
               
               Conread position:9-326
               
               
               Cow position:chr11:14649874-14650183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 113

               
               
               Conread position:9-396
               
               
               Cow position:chr11:48659097-48658698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:9-431
               
               
               Cow position:chr11:70424753-70424324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 118

               
               
               Conread position:9-454
               
               
               Cow position:chr11:32956471-32956907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 125

               
               
               Conread position:9-489
               
               
               Cow position:chr11:5584080-5584562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 125

               
               
               Conread position:9-489
               
               
               Cow position:chr11:35737978-35738468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 23

               
               
               Conread position:10-322
               
               
               Cow position:chr11:28394431-28394127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 76

               
               
               Conread position:10-443
               
               
               Cow position:chr11:40402417-40402850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 124

               
               
               Conread position:10-485
               
               
               Cow position:chr11:28692617-28693092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:10-486
               
               
               Cow position:chr11:80591723-80591240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 151

               
               
               Conread position:10-487
               
               
               Cow position:chr11:80789022-80789515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 150

               
               
               Conread position:10-489
               
               
               Cow position:chr11:3681486-3681968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:333
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):40, 149

               
               
               Conread position:10-489
               
               
               Cow position:chr11:3796578-3796110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 89

               
               
               Conread position:10-489
               
               
               Cow position:chr11:35241517-35241995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 150

               
               
               Conread position:10-489
               
               
               Cow position:chr11:41102271-41101791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:325
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):40, 130

               
               
               Conread position:10-489
               
               
               Cow position:chr11:49236609-49237091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 150

               
               
               Conread position:10-489
               
               
               Cow position:chr11:67848595-67849106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 267

               
               
               Conread position:11-489
               
               
               Cow position:chr11:13453922-13454391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:313
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 19

               
               
               Conread position:11-489
               
               
               Cow position:chr11:62873352-62873824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:314
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):39, 139

               
               
               Conread position:16-450
               
               
               Cow position:chr11:12112290-12111840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 143

               
               
               Conread position:20-299
               
               
               Cow position:chr11:11996629-11996896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):30, 5

               
               
               Conread position:21-485
               
               
               Cow position:chr11:41726138-41725695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:309
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 68

               
               
               Conread position:21-487
               
               
               Cow position:chr11:4206540-4206056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 143

               
               
               Conread position:22-322
               
               
               Cow position:chr11:9214413-9214712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 125

               
               
               Conread position:22-467
               
               
               Cow position:chr11:38235417-38235873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 91

               
               
               Conread position:23-266
               
               
               Cow position:chr11:30191145-30190909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):27, 97

               
               
               Conread position:23-339
               
               
               Cow position:chr11:48649107-48648795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 139

               
               
               Conread position:24-322
               
               
               Cow position:chr11:17862824-17863116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 132

               
               
               Conread position:49-361
               
               
               Cow position:chr11:53280077-53280385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 106

               
               
               Conread position:49-448
               
               
               Cow position:chr11:43917756-43917349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 106

               
               
               Conread position:49-489
               
               
               Cow position:chr11:17831875-17832319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 106

               
               
               Conread position:49-489
               
               
               Cow position:chr11:22933286-22933749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 56

               
               
               Conread position:51-489
               
               
               Cow position:chr11:30790465-30790925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:310
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:52-489
               
               
               Cow position:chr11:4060634-4061065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 103

               
               
               Conread position:54-303
               
               
               Cow position:chr11:62881322-62881560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):32, 101

               
               
               Conread position:54-448
               
               
               Cow position:chr11:77033775-77034177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 106

               
               
               Conread position:56-489
               
               
               Cow position:chr11:18067508-18067927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 94

               
               
               Conread position:57-344
               
               
               Cow position:chr11:45632642-45632924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 98

               
               
               Conread position:62-313
               
               
               Cow position:chr11:44644152-44644392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 83

               
               
               Conread position:67-283
               
               
               Cow position:chr11:6733879-6734093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):19, 88

               
               
               Conread position:72-268
               
               
               Cow position:chr11:37290591-37290393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:72-303
               
               
               Cow position:chr11:7926008-7926213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):14, 42

               
               
               Conread position:72-433
               
               
               Cow position:chr11:8499361-8498997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:268
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):14, 77

               
               
               Conread position:72-487
               
               
               Cow position:chr11:21896405-21896819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 77

               
               
               Conread position:72-489
               
               
               Cow position:chr11:32077484-32077908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:72-489
               
               
               Cow position:chr11:38832180-38832603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:72-489
               
               
               Cow position:chr11:53428708-53429148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 83

               
               
               Conread position:72-489
               
               
               Cow position:chr11:70030718-70030295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:72-489
               
               
               Cow position:chr11:74990920-74990494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 87

               
               
               Conread position:78-322
               
               
               Cow position:chr11:32067962-32068200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):7, 77

               
               
               Conread position:79-489
               
               
               Cow position:chr11:21728730-21729146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 5

               
               
               Conread position:83-489
               
               
               Cow position:chr11:40772787-40773181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:294
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):197, 44

               
               
               Conread position:84-483
               
               
               Cow position:chr11:67347841-67348233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:283
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):254, 36

               
               
               Conread position:87-489
               
               
               Cow position:chr11:38069581-38069169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 66

               
               
               Conread position:91-489
               
               
               Cow position:chr11:81068008-81067623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:297
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):179, 62

               
               
               Conread position:94-489
               
               
               Cow position:chr11:7229635-7229234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 59

               
               
               Conread position:96-322
               
               
               Cow position:chr11:81388253-81388042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:99-489
               
               
               Cow position:chr11:10365132-10365516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:277
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):205, 53

               
               
               Conread position:101-469
               
               
               Cow position:chr11:3230589-3230218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 53

               
               
               Conread position:108-320
               
               
               Cow position:chr11:35861114-35861315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:113-487
               
               
               Cow position:chr11:37279326-37279698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 6

               
               
               Conread position:119-489
               
               
               Cow position:chr11:83285143-83284767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 34

               
               
               Conread position:120-489
               
               
               Cow position:chr11:58049683-58050051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):174, 28

               
               
               Conread position:155-432
               
               
               Cow position:chr11:38638112-38638394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):173, 24

               
               
               Conread position:163-480
               
               
               Cow position:chr11:56228142-56227812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):130, 103

               
               
               Conread position:163-487
               
               
               Cow position:chr11:61426884-61426568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:163-489
               
               
               Cow position:chr11:67863076-67863403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):129, 63

               
               
               Conread position:171-489
               
               
               Cow position:chr11:17980091-17980418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 55

               
               
               Conread position:178-403
               
               
               Cow position:chr11:37346141-37345903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):145, 88

               
               
               Conread position:178-483
               
               
               Cow position:chr11:40487351-40487036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):68, 93

               
               
               Conread position:180-489
               
               
               Cow position:chr11:11257242-11256941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):156, 26

               
               
               Conread position:180-489
               
               
               Cow position:chr11:33733390-33733704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):65, 87

               
               
               Conread position:234-485
               
               
               Cow position:chr11:42517481-42517219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):69, 42

               
               
               Conread position:237-487
               
               
               Cow position:chr11:66732266-66732006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):64, 37

               
               
               Conread position:238-483
               
               
               Cow position:chr11:26400618-26400364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):67, 9

               
               
               Conread position:262-489
               
               
               Cow position:chr11:38793693-38793461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):10, 121

               
               
               Conread position:267-489
               
               
               Cow position:chr11:62225352-62225132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 12

               
               
               Conread position:268-474
               
               
               Cow position:chr11:15128889-15128667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 102

               
               
               Conread position:1-228
               
               
               Cow position:chr12:9886349-9886578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:183
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):14, 162

               
               
               Conread position:1-235
               
               
               Cow position:chr12:21579127-21579362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-235
               
               
               Cow position:chr12:27986980-27987220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:187
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):56, 123

               
               
               Conread position:1-268
               
               
               Cow position:chr12:1408491-1408226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):49, 152

               
               
               Conread position:1-294
               
               
               Cow position:chr12:8673791-8674085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 160

               
               
               Conread position:1-299
               
               
               Cow position:chr12:25260094-25260391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-299
               
               
               Cow position:chr12:47415459-47415167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:1-303
               
               
               Cow position:chr12:37697818-37698116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 85

               
               
               Conread position:1-306
               
               
               Cow position:chr12:28707967-28708268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-311
               
               
               Cow position:chr12:2511739-2512039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-316
               
               
               Cow position:chr12:6404129-6404441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-319
               
               
               Cow position:chr12:20218154-20217838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-320
               
               
               Cow position:chr12:22286277-22286592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 114

               
               
               Conread position:1-322
               
               
               Cow position:chr12:5800438-5800120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr12:5905183-5904872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 63

               
               
               Conread position:1-322
               
               
               Cow position:chr12:27851996-27852310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr12:29485012-29485320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):85, 43

               
               
               Conread position:1-322
               
               
               Cow position:chr12:38774734-38774433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:1-322
               
               
               Cow position:chr12:40867991-40867673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-323
               
               
               Cow position:chr12:27929068-27929395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-326
               
               
               Cow position:chr12:44766487-44766167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 156

               
               
               Conread position:1-372
               
               
               Cow position:chr12:35135950-35135580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):63, 132

               
               
               Conread position:1-409
               
               
               Cow position:chr12:23441275-23441702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:301
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):48, 104

               
               
               Conread position:1-412
               
               
               Cow position:chr12:21946639-21946231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:301
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):49, 138

               
               
               Conread position:1-460
               
               
               Cow position:chr12:22202023-22202495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-460
               
               
               Cow position:chr12:28763357-28763827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 168

               
               
               Conread position:1-467
               
               
               Cow position:chr12:34177213-34176734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 159

               
               
               Conread position:1-487
               
               
               Cow position:chr12:21313758-21314270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 90

               
               
               Conread position:1-487
               
               
               Cow position:chr12:32849230-32848727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 168

               
               
               Conread position:1-487
               
               
               Cow position:chr12:33297287-33296792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 155

               
               
               Conread position:1-487
               
               
               Cow position:chr12:40306928-40306458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 163

               
               
               Conread position:1-488
               
               
               Cow position:chr12:17663605-17663121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 96

               
               
               Conread position:1-488
               
               
               Cow position:chr12:20994097-20994606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 260

               
               
               Conread position:1-488
               
               
               Cow position:chr12:21905027-21904525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 36

               
               
               Conread position:1-489
               
               
               Cow position:chr12:1774249-1774761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 133

               
               
               Conread position:1-489
               
               
               Cow position:chr12:3181067-3180572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr12:5110409-5110903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-489
               
               
               Cow position:chr12:5713620-5713121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr12:11101906-11101405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr12:15821375-15820889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:1-489
               
               
               Cow position:chr12:24028825-24029321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr12:27505992-27506492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr12:31328672-31329173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 122

               
               
               Conread position:1-489
               
               
               Cow position:chr12:41337571-41338075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 163

               
               
               Conread position:1-489
               
               
               Cow position:chr12:43681662-43681162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr12:48416095-48416588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 53

               
               
               Conread position:2-483
               
               
               Cow position:chr12:4544598-4545043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:313
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):245, 71

               
               
               Conread position:4-270
               
               
               Cow position:chr12:18421565-18421839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):82, 178

               
               
               Conread position:4-466
               
               
               Cow position:chr12:12177583-12178055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 87

               
               
               Conread position:4-489
               
               
               Cow position:chr12:3716621-3717116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 159

               
               
               Conread position:5-464
               
               
               Cow position:chr12:22480772-22480307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 81

               
               
               Conread position:5-484
               
               
               Cow position:chr12:249668-250156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 19

               
               
               Conread position:5-489
               
               
               Cow position:chr12:41973121-41973615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 92

               
               
               Conread position:6-321
               
               
               Cow position:chr12:10402739-10403049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):29, 24

               
               
               Conread position:6-353
               
               
               Cow position:chr12:22975606-22975961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):42, 157

               
               
               Conread position:6-487
               
               
               Cow position:chr12:19871884-19871371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 44

               
               
               Conread position:8-244
               
               
               Cow position:chr12:27439033-27439266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 23

               
               
               Conread position:8-293
               
               
               Cow position:chr12:19868866-19868592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):262, 39

               
               
               Conread position:8-302
               
               
               Cow position:chr12:5146219-5145918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):34, 153

               
               
               Conread position:8-322
               
               
               Cow position:chr12:30142061-30141758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):40, 67

               
               
               Conread position:8-409
               
               
               Cow position:chr12:19873207-19872822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 81

               
               
               Conread position:8-431
               
               
               Cow position:chr12:22687133-22686712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:303
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):20, 99

               
               
               Conread position:8-489
               
               
               Cow position:chr12:24558221-24557737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 24

               
               
               Conread position:8-489
               
               
               Cow position:chr12:25313063-25313556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:9-322
               
               
               Cow position:chr12:6441202-6441498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):39, 134

               
               
               Conread position:9-446
               
               
               Cow position:chr12:5226880-5226434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:9-483
               
               
               Cow position:chr12:21718522-21719014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:9-488
               
               
               Cow position:chr12:19198666-19198194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 120

               
               
               Conread position:9-489
               
               
               Cow position:chr12:8841398-8841898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 158

               
               
               Conread position:9-489
               
               
               Cow position:chr12:22594402-22593922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 109

               
               
               Conread position:11-463
               
               
               Cow position:chr12:3070510-3070040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 149

               
               
               Conread position:11-489
               
               
               Cow position:chr12:10931733-10931242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 148

               
               
               Conread position:11-489
               
               
               Cow position:chr12:15939233-15939704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 134

               
               
               Conread position:11-489
               
               
               Cow position:chr12:21057067-21057549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 131

               
               
               Conread position:23-489
               
               
               Cow position:chr12:12754530-12754999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 137

               
               
               Conread position:49-489
               
               
               Cow position:chr12:27994704-27994258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 104

               
               
               Conread position:51-489
               
               
               Cow position:chr12:17969564-17969146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 7

               
               
               Conread position:53-378
               
               
               Cow position:chr12:21557548-21557216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):33, 102

               
               
               Conread position:71-489
               
               
               Cow position:chr12:18586252-18585830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 13

               
               
               Conread position:72-484
               
               
               Cow position:chr12:26869670-26870094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:84-300
               
               
               Cow position:chr12:34103750-34103963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):113, 65

               
               
               Conread position:85-293
               
               
               Cow position:chr12:6686503-6686302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:101-477
               
               
               Cow position:chr12:24206081-24205704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 52

               
               
               Conread position:104-489
               
               
               Cow position:chr12:36568779-36569187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:283
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):47, 173

               
               
               Conread position:111-489
               
               
               Cow position:chr12:25096727-25097108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 42

               
               
               Conread position:178-485
               
               
               Cow position:chr12:28738004-28737687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):57, 93

               
               
               Conread position:180-489
               
               
               Cow position:chr12:30687222-30686899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 87

               
               
               Conread position:184-420
               
               
               Cow position:chr12:3094147-3094397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):111, 82

               
               
               Conread position:196-489
               
               
               Cow position:chr12:47803616-47803329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):142, 70

               
               
               Conread position:201-401
               
               
               Cow position:chr12:19862145-19861948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):104, 65

               
               
               Conread position:206-489
               
               
               Cow position:chr12:32285325-32285044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):148, 60

               
               
               Conread position:246-488
               
               
               Cow position:chr12:21862024-21862265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):47, 24

               
               
               Conread position:250-436
               
               
               Cow position:chr12:39283107-39283307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:314-489
               
               
               Cow position:chr12:8674734-8674908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):72, 45

               
               
               Conread position:314-489
               
               
               Cow position:chr12:27929459-27929634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:314-489
               
               
               Cow position:chr12:35311586-35311754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):76, 41

               
               
               Conread position:314-489
               
               
               Cow position:chr12:42232642-42232467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:321-489
               
               
               Cow position:chr12:21089614-21089782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):68, 36

               
               
               Conread position:1-219
               
               
               Cow position:chr13:16270512-16270731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):49, 163

               
               
               Conread position:1-219
               
               
               Cow position:chr13:52859556-52859753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:1-223
               
               
               Cow position:chr13:7465647-7465864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):47, 153

               
               
               Conread position:1-226
               
               
               Cow position:chr13:10928462-10928240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-242
               
               
               Cow position:chr13:30694562-30694798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-253
               
               
               Cow position:chr13:34728305-34728051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:1-259
               
               
               Cow position:chr13:1011868-1012127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):45, 160

               
               
               Conread position:1-268
               
               
               Cow position:chr13:43383882-43383615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):47, 159

               
               
               Conread position:1-275
               
               
               Cow position:chr13:1155167-1154900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):48, 133

               
               
               Conread position:1-281
               
               
               Cow position:chr13:46428388-46428111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-284
               
               
               Cow position:chr13:53574540-53574820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 26

               
               
               Conread position:1-293
               
               
               Cow position:chr13:33466870-33466579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 159

               
               
               Conread position:1-294
               
               
               Cow position:chr13:6553021-6553303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):85, 105

               
               
               Conread position:1-302
               
               
               Cow position:chr13:47590604-47590305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:218
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):49, 76

               
               
               Conread position:1-320
               
               
               Cow position:chr13:24059790-24059461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 172

               
               
               Conread position:1-320
               
               
               Cow position:chr13:29658376-29658698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 163

               
               
               Conread position:1-322
               
               
               Cow position:chr13:2800334-2800016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr13:7365904-7365586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr13:30504997-30505308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 75

               
               
               Conread position:1-322
               
               
               Cow position:chr13:62479986-62479670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):49, 73

               
               
               Conread position:1-324
               
               
               Cow position:chr13:6417988-6417670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 39

               
               
               Conread position:1-424
               
               
               Cow position:chr13:41807291-41807709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-433
               
               
               Cow position:chr13:30431582-30431140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 158

               
               
               Conread position:1-440
               
               
               Cow position:chr13:28413842-28414291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:1-446
               
               
               Cow position:chr13:15446587-15447013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:316
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):118, 46

               
               
               Conread position:1-449
               
               
               Cow position:chr13:48627985-48627540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 37

               
               
               Conread position:1-452
               
               
               Cow position:chr13:13313039-13312577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-465
               
               
               Cow position:chr13:24931371-24931845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 35

               
               
               Conread position:1-475
               
               
               Cow position:chr13:33631700-33632171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 21

               
               
               Conread position:1-482
               
               
               Cow position:chr13:14302537-14303030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-484
               
               
               Cow position:chr13:9537687-9537195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-484
               
               
               Cow position:chr13:20778018-20778512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:1-484
               
               
               Cow position:chr13:48945475-48945981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 173

               
               
               Conread position:1-485
               
               
               Cow position:chr13:11795252-11795744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 163

               
               
               Conread position:1-486
               
               
               Cow position:chr13:21135182-21134686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 193

               
               
               Conread position:1-486
               
               
               Cow position:chr13:57027677-57027197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 158

               
               
               Conread position:1-489
               
               
               Cow position:chr13:9049049-9048544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:1-489
               
               
               Cow position:chr13:11254209-11254698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 182

               
               
               Conread position:1-489
               
               
               Cow position:chr13:12618552-12618072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:1-489
               
               
               Cow position:chr13:13903305-13902805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr13:14399625-14400128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr13:15280738-15280236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 163

               
               
               Conread position:1-489
               
               
               Cow position:chr13:15921010-15921508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr13:17496510-17496032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):307, 63

               
               
               Conread position:1-489
               
               
               Cow position:chr13:20538121-20538595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-489
               
               
               Cow position:chr13:32773906-32774400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr13:32793892-32794392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 161

               
               
               Conread position:1-489
               
               
               Cow position:chr13:32921863-32922361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr13:33162398-33161890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 186

               
               
               Conread position:1-489
               
               
               Cow position:chr13:33332915-33333432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr13:34345752-34345253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr13:34871409-34870909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 158

               
               
               Conread position:1-489
               
               
               Cow position:chr13:34905144-34905624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 81

               
               
               Conread position:1-489
               
               
               Cow position:chr13:35540851-35540355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr13:38013216-38013705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 72

               
               
               Conread position:1-489
               
               
               Cow position:chr13:44323519-44324012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr13:55406141-55405657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:341
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):85, 31

               
               
               Conread position:4-489
               
               
               Cow position:chr13:22774758-22774252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 100

               
               
               Conread position:4-489
               
               
               Cow position:chr13:33907293-33907804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 178

               
               
               Conread position:5-320
               
               
               Cow position:chr13:30794350-30794646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):77, 30

               
               
               Conread position:5-368
               
               
               Cow position:chr13:60489742-60489389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 156

               
               
               Conread position:5-396
               
               
               Cow position:chr13:43594276-43593878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 151

               
               
               Conread position:5-487
               
               
               Cow position:chr13:4664063-4663574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 137

               
               
               Conread position:5-489
               
               
               Cow position:chr13:560942-561437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 114

               
               
               Conread position:5-489
               
               
               Cow position:chr13:3315069-3314576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 155

               
               
               Conread position:5-489
               
               
               Cow position:chr13:4487299-4486802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 155

               
               
               Conread position:5-489
               
               
               Cow position:chr13:4944836-4944339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 155

               
               
               Conread position:5-489
               
               
               Cow position:chr13:22906827-22907320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 122

               
               
               Conread position:8-244
               
               
               Cow position:chr13:17317878-17318115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):42, 152

               
               
               Conread position:8-288
               
               
               Cow position:chr13:10755435-10755719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 155

               
               
               Conread position:9-267
               
               
               Cow position:chr13:24690841-24691098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:9-293
               
               
               Cow position:chr13:21657189-21657466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):39, 148

               
               
               Conread position:9-322
               
               
               Cow position:chr13:5619897-5620207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):41, 86

               
               
               Conread position:9-322
               
               
               Cow position:chr13:31606347-31606674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):40, 130

               
               
               Conread position:9-379
               
               
               Cow position:chr13:12978106-12978486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 153

               
               
               Conread position:9-449
               
               
               Cow position:chr13:31580266-31579832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 124

               
               
               Conread position:9-467
               
               
               Cow position:chr13:32152352-32152812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 77

               
               
               Conread position:9-484
               
               
               Cow position:chr13:9570563-9571053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 161

               
               
               Conread position:9-487
               
               
               Cow position:chr13:42114566-42115042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 132

               
               
               Conread position:9-489
               
               
               Cow position:chr13:20571278-20571760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:9-489
               
               
               Cow position:chr13:51184750-51184259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:320
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:10-322
               
               
               Cow position:chr13:14716796-14716487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 150

               
               
               Conread position:10-414
               
               
               Cow position:chr13:54864381-54863977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 20

               
               
               Conread position:10-489
               
               
               Cow position:chr13:17270808-17271287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 143

               
               
               Conread position:10-489
               
               
               Cow position:chr13:26822702-26823171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 120

               
               
               Conread position:11-489
               
               
               Cow position:chr13:3015618-3015118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 146

               
               
               Conread position:12-287
               
               
               Cow position:chr13:20175831-20176097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 122

               
               
               Conread position:12-313
               
               
               Cow position:chr13:11223520-11223825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 18

               
               
               Conread position:18-489
               
               
               Cow position:chr13:23266400-23266880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 136

               
               
               Conread position:21-286
               
               
               Cow position:chr13:38387027-38387286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):65, 44

               
               
               Conread position:23-489
               
               
               Cow position:chr13:35760968-35760491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 85

               
               
               Conread position:23-489
               
               
               Cow position:chr13:61954680-61954191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 136

               
               
               Conread position:24-485
               
               
               Cow position:chr13:1461095-1461579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 147

               
               
               Conread position:25-304
               
               
               Cow position:chr13:46597720-46597993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 56

               
               
               Conread position:26-489
               
               
               Cow position:chr13:837982-838458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 137

               
               
               Conread position:38-405
               
               
               Cow position:chr13:12572034-12572409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 119

               
               
               Conread position:46-389
               
               
               Cow position:chr13:54216288-54215933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:256
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):40, 134

               
               
               Conread position:49-489
               
               
               Cow position:chr13:13332550-13333005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 109

               
               
               Conread position:50-489
               
               
               Cow position:chr13:16248549-16248993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 105

               
               
               Conread position:51-275
               
               
               Cow position:chr13:12404064-12403844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):35, 104

               
               
               Conread position:52-484
               
               
               Cow position:chr13:34762631-34763032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 103

               
               
               Conread position:71-489
               
               
               Cow position:chr13:9301532-9301119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 84

               
               
               Conread position:72-290
               
               
               Cow position:chr13:36352158-36351950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):13, 83

               
               
               Conread position:72-312
               
               
               Cow position:chr13:35686577-35686341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:72-441
               
               
               Cow position:chr13:16344779-16345147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 62

               
               
               Conread position:72-445
               
               
               Cow position:chr13:30241938-30241558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 46

               
               
               Conread position:72-489
               
               
               Cow position:chr13:25694840-25694448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 71

               
               
               Conread position:72-489
               
               
               Cow position:chr13:39944861-39944456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:286
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):16, 43

               
               
               Conread position:72-489
               
               
               Cow position:chr13:42088110-42088519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 82

               
               
               Conread position:84-489
               
               
               Cow position:chr13:2804922-2805333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 69

               
               
               Conread position:99-368
               
               
               Cow position:chr13:47313350-47313616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):237, 54

               
               
               Conread position:101-489
               
               
               Cow position:chr13:60426377-60425977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 58

               
               
               Conread position:107-326
               
               
               Cow position:chr13:60392873-60392657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):187, 47

               
               
               Conread position:120-322
               
               
               Cow position:chr13:17456424-17456232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:148-428
               
               
               Cow position:chr13:47189313-47189027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):180, 25

               
               
               Conread position:176-489
               
               
               Cow position:chr13:19393849-19394173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):132, 94

               
               
               Conread position:177-489
               
               
               Cow position:chr13:54238174-54238494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 89

               
               
               Conread position:179-302
               
               
               Cow position:chr13:42249536-42249658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:180-476
               
               
               Cow position:chr13:15257159-15256842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):144, 86

               
               
               Conread position:181-489
               
               
               Cow position:chr13:46488627-46488932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):147, 17

               
               
               Conread position:184-489
               
               
               Cow position:chr13:52085033-52085348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):140, 82

               
               
               Conread position:185-489
               
               
               Cow position:chr13:22276053-22275729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):102, 89

               
               
               Conread position:196-487
               
               
               Cow position:chr13:33351676-33351406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):97, 70

               
               
               Conread position:198-429
               
               
               Cow position:chr13:60446507-60446276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):35, 163

               
               
               Conread position:205-489
               
               
               Cow position:chr13:32955218-32955512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:221
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):90, 32

               
               
               Conread position:205-489
               
               
               Cow position:chr13:32982159-32982453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:221
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):90, 32

               
               
               Conread position:205-489
               
               
               Cow position:chr13:58740815-58740524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 69

               
               
               Conread position:207-466
               
               
               Cow position:chr13:26381967-26381691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):53, 82

               
               
               Conread position:217-489
               
               
               Cow position:chr13:7609379-7609094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 78

               
               
               Conread position:232-489
               
               
               Cow position:chr13:18097403-18097673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):11, 21

               
               
               Conread position:314-489
               
               
               Cow position:chr13:52459045-52459212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):76, 44

               
               
               Conread position:317-483
               
               
               Cow position:chr13:47577714-47577547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):5, 54

               
               
               Conread position:323-468
               
               
               Cow position:chr13:29721636-29721491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:337-489
               
               
               Cow position:chr13:33500838-33500990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):51, 22

               
               
               Conread position:389-489
               
               
               Cow position:chr13:43593755-43593655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-227
               
               
               Cow position:chr14:2269626-2269843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 131

               
               
               Conread position:1-227
               
               
               Cow position:chr14:16916441-16916664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-241
               
               
               Cow position:chr14:25682550-25682794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:190
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):49, 154

               
               
               Conread position:1-241
               
               
               Cow position:chr14:25779703-25779936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:193
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:1-242
               
               
               Cow position:chr14:36880346-36880586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):12, 81

               
               
               Conread position:1-258
               
               
               Cow position:chr14:47583384-47583127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-293
               
               
               Cow position:chr14:37227513-37227222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-306
               
               
               Cow position:chr14:5491980-5492284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-306
               
               
               Cow position:chr14:41756874-41757177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):49, 113

               
               
               Conread position:1-307
               
               
               Cow position:chr14:30759735-30760037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):54, 158

               
               
               Conread position:1-312
               
               
               Cow position:chr14:9020623-9020931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 81

               
               
               Conread position:1-316
               
               
               Cow position:chr14:18811520-18811227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):67, 100

               
               
               Conread position:1-321
               
               
               Cow position:chr14:13385964-13386280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 155

               
               
               Conread position:1-322
               
               
               Cow position:chr14:46085326-46085007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-324
               
               
               Cow position:chr14:28138157-28138476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-326
               
               
               Cow position:chr14:46966972-46967270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1-369
               
               
               Cow position:chr14:19324029-19324391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 156

               
               
               Conread position:1-384
               
               
               Cow position:chr14:25459142-25458746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 158

               
               
               Conread position:1-407
               
               
               Cow position:chr14:37677693-37677281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:301
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):52, 99

               
               
               Conread position:1-411
               
               
               Cow position:chr14:38379881-38380284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-414
               
               
               Cow position:chr14:5379477-5379053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-440
               
               
               Cow position:chr14:18497305-18496856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-441
               
               
               Cow position:chr14:33773291-33772846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-453
               
               
               Cow position:chr14:24895990-24895526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 83

               
               
               Conread position:1-461
               
               
               Cow position:chr14:17219636-17219170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-464
               
               
               Cow position:chr14:9875982-9876438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 26

               
               
               Conread position:1-468
               
               
               Cow position:chr14:38391560-38391084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-469
               
               
               Cow position:chr14:46304172-46303691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 283

               
               
               Conread position:1-476
               
               
               Cow position:chr14:34667533-34668017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-482
               
               
               Cow position:chr14:22026458-22026948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 160

               
               
               Conread position:1-483
               
               
               Cow position:chr14:42626352-42626852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 123

               
               
               Conread position:1-485
               
               
               Cow position:chr14:50068879-50069375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:1-487
               
               
               Cow position:chr14:2298401-2297916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 91

               
               
               Conread position:1-487
               
               
               Cow position:chr14:30592938-30593442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 159

               
               
               Conread position:1-487
               
               
               Cow position:chr14:32471586-32472079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 85

               
               
               Conread position:1-488
               
               
               Cow position:chr14:8102365-8102852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 155

               
               
               Conread position:1-488
               
               
               Cow position:chr14:21390066-21390542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 156

               
               
               Conread position:1-489
               
               
               Cow position:chr14:193468-192969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 14

               
               
               Conread position:1-489
               
               
               Cow position:chr14:8884567-8885062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 105

               
               
               Conread position:1-489
               
               
               Cow position:chr14:10310879-10310378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr14:12613539-12613050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 47

               
               
               Conread position:1-489
               
               
               Cow position:chr14:12739729-12740230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr14:12834169-12833669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 68

               
               
               Conread position:1-489
               
               
               Cow position:chr14:13309051-13308551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr14:13560462-13559982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 29

               
               
               Conread position:1-489
               
               
               Cow position:chr14:13768976-13769472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr14:13810717-13811216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr14:17690445-17689947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 164

               
               
               Conread position:1-489
               
               
               Cow position:chr14:20786702-20786203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr14:23179588-23180068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:324
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):47, 99

               
               
               Conread position:1-489
               
               
               Cow position:chr14:24980867-24980366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr14:28993033-28993529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr14:29772815-29773310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 133

               
               
               Conread position:1-489
               
               
               Cow position:chr14:32583715-32584206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 109

               
               
               Conread position:1-489
               
               
               Cow position:chr14:33834688-33835191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 120

               
               
               Conread position:1-489
               
               
               Cow position:chr14:34395052-34394557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr14:35300722-35301208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:336
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):85, 119

               
               
               Conread position:1-489
               
               
               Cow position:chr14:35420177-35419690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 88

               
               
               Conread position:1-489
               
               
               Cow position:chr14:40475401-40475895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:1-489
               
               
               Cow position:chr14:41446324-41445824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 124

               
               
               Conread position:1-489
               
               
               Cow position:chr14:44026496-44026996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr14:44382599-44382099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr14:45848474-45847977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:1-489
               
               
               Cow position:chr14:48251136-48251629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr14:49995226-49995724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr14:50114661-50114186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 88

               
               
               Conread position:2-489
               
               
               Cow position:chr14:49219652-49219151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:334
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:4-265
               
               
               Cow position:chr14:21597011-21596750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 156

               
               
               Conread position:4-322
               
               
               Cow position:chr14:39433678-39433359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 155

               
               
               Conread position:4-486
               
               
               Cow position:chr14:48828537-48828039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-487
               
               
               Cow position:chr14:5501240-5500757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-489
               
               
               Cow position:chr14:5532658-5532159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 159

               
               
               Conread position:4-489
               
               
               Cow position:chr14:27040068-27040564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 157

               
               
               Conread position:5-322
               
               
               Cow position:chr14:40346575-40346261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 19

               
               
               Conread position:5-412
               
               
               Cow position:chr14:45300225-45299825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 35

               
               
               Conread position:5-487
               
               
               Cow position:chr14:45576930-45576467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:334
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):45, 62

               
               
               Conread position:5-489
               
               
               Cow position:chr14:32450269-32449775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 10

               
               
               Conread position:5-489
               
               
               Cow position:chr14:34906841-34906344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 164

               
               
               Conread position:5-489
               
               
               Cow position:chr14:36709775-36710242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 39

               
               
               Conread position:5-489
               
               
               Cow position:chr14:44293933-44293440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 160

               
               
               Conread position:6-241
               
               
               Cow position:chr14:48492194-48491959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):43, 154

               
               
               Conread position:6-489
               
               
               Cow position:chr14:21534445-21533957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 61

               
               
               Conread position:7-489
               
               
               Cow position:chr14:424487-424005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 152

               
               
               Conread position:8-322
               
               
               Cow position:chr14:35711361-35711052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 148

               
               
               Conread position:8-322
               
               
               Cow position:chr14:45328105-45327804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):45, 115

               
               
               Conread position:8-326
               
               
               Cow position:chr14:18128912-18128596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 132

               
               
               Conread position:8-487
               
               
               Cow position:chr14:45186521-45187014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 154

               
               
               Conread position:8-488
               
               
               Cow position:chr14:14420095-14420585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 152

               
               
               Conread position:8-489
               
               
               Cow position:chr14:8517825-8517335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 154

               
               
               Conread position:8-489
               
               
               Cow position:chr14:24837121-24836622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 86

               
               
               Conread position:8-489
               
               
               Cow position:chr14:38406293-38405795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 149

               
               
               Conread position:8-489
               
               
               Cow position:chr14:44253496-44253995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 153

               
               
               Conread position:9-268
               
               
               Cow position:chr14:49411640-49411381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:9-269
               
               
               Cow position:chr14:27844640-27844380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 140

               
               
               Conread position:9-269
               
               
               Cow position:chr14:49421107-49420852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):41, 64

               
               
               Conread position:9-287
               
               
               Cow position:chr14:13990409-13990678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):44, 85

               
               
               Conread position:9-292
               
               
               Cow position:chr14:47608775-47608496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):41, 19

               
               
               Conread position:9-320
               
               
               Cow position:chr14:29898338-29898025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 89

               
               
               Conread position:9-322
               
               
               Cow position:chr14:12243783-12243480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 77

               
               
               Conread position:9-355
               
               
               Cow position:chr14:18983736-18983384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 33

               
               
               Conread position:9-485
               
               
               Cow position:chr14:39821769-39822254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 192

               
               
               Conread position:9-488
               
               
               Cow position:chr14:22689589-22690075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 124

               
               
               Conread position:9-489
               
               
               Cow position:chr14:10541583-10542070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 146

               
               
               Conread position:9-489
               
               
               Cow position:chr14:12545993-12545483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 151

               
               
               Conread position:9-489
               
               
               Cow position:chr14:45085228-45084734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 156

               
               
               Conread position:10-322
               
               
               Cow position:chr14:13464648-13464345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):40, 110

               
               
               Conread position:10-413
               
               
               Cow position:chr14:23259615-23260030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):40, 27

               
               
               Conread position:10-484
               
               
               Cow position:chr14:35382189-35382664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 150

               
               
               Conread position:21-489
               
               
               Cow position:chr14:11564830-11564354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 124

               
               
               Conread position:23-450
               
               
               Cow position:chr14:40166491-40166905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):26, 131

               
               
               Conread position:24-322
               
               
               Cow position:chr14:33666121-33665827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 88

               
               
               Conread position:24-489
               
               
               Cow position:chr14:50028544-50029002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 76

               
               
               Conread position:25-487
               
               
               Cow position:chr14:44076366-44076864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 135

               
               
               Conread position:30-489
               
               
               Cow position:chr14:30476058-30476522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 125

               
               
               Conread position:46-489
               
               
               Cow position:chr14:13860266-13860722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 109

               
               
               Conread position:49-356
               
               
               Cow position:chr14:1867755-1867444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):37, 106

               
               
               Conread position:49-487
               
               
               Cow position:chr14:13276340-13275894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:318
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):37, 57

               
               
               Conread position:49-489
               
               
               Cow position:chr14:45583570-45583133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 28

               
               
               Conread position:52-475
               
               
               Cow position:chr14:46752335-46752752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 30

               
               
               Conread position:56-355
               
               
               Cow position:chr14:9108494-9108787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 103

               
               
               Conread position:56-472
               
               
               Cow position:chr14:46225424-46225016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):268, 20

               
               
               Conread position:59-489
               
               
               Cow position:chr14:40246546-40246970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 96

               
               
               Conread position:64-482
               
               
               Cow position:chr14:44584503-44584070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:306
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):23, 65

               
               
               Conread position:72-489
               
               
               Cow position:chr14:50141781-50142204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 69

               
               
               Conread position:75-489
               
               
               Cow position:chr14:8998845-8998434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 80

               
               
               Conread position:85-483
               
               
               Cow position:chr14:44555069-44554671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 14

               
               
               Conread position:87-245
               
               
               Cow position:chr14:38295532-38295380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:90-468
               
               
               Cow position:chr14:34354761-34354390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 63

               
               
               Conread position:105-489
               
               
               Cow position:chr14:28117265-28116880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:111-489
               
               
               Cow position:chr14:8925299-8924915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 45

               
               
               Conread position:116-318
               
               
               Cow position:chr14:12859341-12859530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:120-322
               
               
               Cow position:chr14:2171872-2171680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:155-322
               
               
               Cow position:chr14:39774118-39773959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):111, 18

               
               
               Conread position:155-489
               
               
               Cow position:chr14:33714141-33713821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):140, 43

               
               
               Conread position:179-306
               
               
               Cow position:chr14:25886435-25886561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:181-373
               
               
               Cow position:chr14:34124359-34124163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):141, 85

               
               
               Conread position:181-484
               
               
               Cow position:chr14:42849461-42849777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):112, 85

               
               
               Conread position:183-489
               
               
               Cow position:chr14:44772699-44773010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):125, 83

               
               
               Conread position:185-489
               
               
               Cow position:chr14:30662901-30663221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:232
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):107, 81

               
               
               Conread position:186-449
               
               
               Cow position:chr14:23813835-23814105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):132, 76

               
               
               Conread position:198-487
               
               
               Cow position:chr14:48360763-48361048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):126, 72

               
               
               Conread position:207-489
               
               
               Cow position:chr14:18323056-18322769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 45

               
               
               Conread position:215-461
               
               
               Cow position:chr14:45067066-45066814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):113, 55

               
               
               Conread position:229-489
               
               
               Cow position:chr14:21540826-21541093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):5, 47

               
               
               Conread position:250-487
               
               
               Cow position:chr14:25683727-25683974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):54, 20

               
               
               Conread position:314-489
               
               
               Cow position:chr14:16916733-16916908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:314-489
               
               
               Cow position:chr14:50145222-50145045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:321-489
               
               
               Cow position:chr14:45789958-45789790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):65, 36

               
               
               Conread position:322-489
               
               
               Cow position:chr14:16997052-16997219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):64, 35

               
               
               Conread position:1-243
               
               
               Cow position:chr15:37370531-37370770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-266
               
               
               Cow position:chr15:36435856-36436118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-267
               
               
               Cow position:chr15:13641414-13641148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):15, 161

               
               
               Conread position:1-273
               
               
               Cow position:chr15:33605570-33605838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:1-278
               
               
               Cow position:chr15:6380593-6380870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):49, 166

               
               
               Conread position:1-322
               
               
               Cow position:chr15:52390473-52390806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:1-345
               
               
               Cow position:chr15:31086190-31086532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:258
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):49, 137

               
               
               Conread position:1-418
               
               
               Cow position:chr15:10839284-10838862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:298
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):49, 83

               
               
               Conread position:1-420
               
               
               Cow position:chr15:17773025-17773458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-441
               
               
               Cow position:chr15:22095751-22096196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 88

               
               
               Conread position:1-459
               
               
               Cow position:chr15:34140665-34141126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 160

               
               
               Conread position:1-461
               
               
               Cow position:chr15:1128672-1129146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 138

               
               
               Conread position:1-463
               
               
               Cow position:chr15:7575126-7574651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 98

               
               
               Conread position:1-468
               
               
               Cow position:chr15:7841643-7841163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 75

               
               
               Conread position:1-477
               
               
               Cow position:chr15:794378-793890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 106

               
               
               Conread position:1-480
               
               
               Cow position:chr15:22855233-22855724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 159

               
               
               Conread position:1-483
               
               
               Cow position:chr15:45244912-45244428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-484
               
               
               Cow position:chr15:5242733-5243212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:1-484
               
               
               Cow position:chr15:6331423-6330949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 31

               
               
               Conread position:1-486
               
               
               Cow position:chr15:3257191-3257679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 159

               
               
               Conread position:1-486
               
               
               Cow position:chr15:17193234-17193737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 8

               
               
               Conread position:1-487
               
               
               Cow position:chr15:4713232-4712732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-487
               
               
               Cow position:chr15:5983953-5983452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 158

               
               
               Conread position:1-489
               
               
               Cow position:chr15:336999-336508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:338
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):49, 112

               
               
               Conread position:1-489
               
               
               Cow position:chr15:442466-442964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 166

               
               
               Conread position:1-489
               
               
               Cow position:chr15:608806-609296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 62

               
               
               Conread position:1-489
               
               
               Cow position:chr15:1329461-1328975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 14

               
               
               Conread position:1-489
               
               
               Cow position:chr15:1776484-1775984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 157

               
               
               Conread position:1-489
               
               
               Cow position:chr15:2015793-2015297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 157

               
               
               Conread position:1-489
               
               
               Cow position:chr15:2805949-2806431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr15:2898932-2899435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 165

               
               
               Conread position:1-489
               
               
               Cow position:chr15:3720818-3721310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:1-489
               
               
               Cow position:chr15:4218595-4219091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 148

               
               
               Conread position:1-489
               
               
               Cow position:chr15:4389071-4388570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr15:4626101-4626596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 81

               
               
               Conread position:1-489
               
               
               Cow position:chr15:4728473-4727987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 66

               
               
               Conread position:1-489
               
               
               Cow position:chr15:4769827-4769327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr15:4829652-4829159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 81

               
               
               Conread position:1-489
               
               
               Cow position:chr15:4925469-4924981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 130

               
               
               Conread position:1-489
               
               
               Cow position:chr15:5913270-5913755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr15:6152320-6152821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr15:6464385-6463896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 156

               
               
               Conread position:1-489
               
               
               Cow position:chr15:7271664-7271158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 166

               
               
               Conread position:1-489
               
               
               Cow position:chr15:7319889-7319389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr15:7548166-7547691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:1-489
               
               
               Cow position:chr15:7553940-7553430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:345
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr15:8629629-8629131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 139

               
               
               Conread position:1-489
               
               
               Cow position:chr15:11628721-11628225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 14

               
               
               Conread position:1-489
               
               
               Cow position:chr15:12417391-12417887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr15:13076849-13076343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 182

               
               
               Conread position:1-489
               
               
               Cow position:chr15:14572999-14573484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 75

               
               
               Conread position:1-489
               
               
               Cow position:chr15:15343785-15344280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr15:16787317-16787808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 147

               
               
               Conread position:1-489
               
               
               Cow position:chr15:17034310-17034804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr15:18019070-18019560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 28

               
               
               Conread position:1-489
               
               
               Cow position:chr15:18214892-18214394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:1-489
               
               
               Cow position:chr15:18661810-18661310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 165

               
               
               Conread position:1-489
               
               
               Cow position:chr15:20413898-20413398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr15:21608085-21607598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 143

               
               
               Conread position:1-489
               
               
               Cow position:chr15:21826190-21825688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr15:24797151-24796689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 53

               
               
               Conread position:1-489
               
               
               Cow position:chr15:26933367-26932865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 154

               
               
               Conread position:1-489
               
               
               Cow position:chr15:27747191-27747697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr15:28071113-28071609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr15:28236299-28235820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:335
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):45, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr15:31357277-31357775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr15:32064970-32065466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 66

               
               
               Conread position:1-489
               
               
               Cow position:chr15:33228734-33229228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr15:33700841-33700329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr15:35749975-35750473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 126

               
               
               Conread position:1-489
               
               
               Cow position:chr15:36940059-36940559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 164

               
               
               Conread position:1-489
               
               
               Cow position:chr15:39090901-39091375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:1-489
               
               
               Cow position:chr15:41360318-41359826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 45

               
               
               Conread position:1-489
               
               
               Cow position:chr15:42533362-42532873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 94

               
               
               Conread position:1-489
               
               
               Cow position:chr15:42940232-42939734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:1-489
               
               
               Cow position:chr15:48557043-48556542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr15:50344414-50344907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:3-489
               
               
               Cow position:chr15:13683650-13683166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:4-266
               
               
               Cow position:chr15:53352920-53352658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-473
               
               
               Cow position:chr15:35739550-35739079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-489
               
               
               Cow position:chr15:6550293-6550791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-489
               
               
               Cow position:chr15:13388016-13388523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 137

               
               
               Conread position:4-489
               
               
               Cow position:chr15:24044074-24043599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 110

               
               
               Conread position:5-293
               
               
               Cow position:chr15:4918429-4918139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 152

               
               
               Conread position:7-489
               
               
               Cow position:chr15:40343937-40344424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 8

               
               
               Conread position:8-228
               
               
               Cow position:chr15:5461142-5460917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 153

               
               
               Conread position:8-447
               
               
               Cow position:chr15:17214686-17215115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:309
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):45, 148

               
               
               Conread position:8-485
               
               
               Cow position:chr15:12456437-12455959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 117

               
               
               Conread position:8-489
               
               
               Cow position:chr15:13545765-13546229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 84

               
               
               Conread position:8-489
               
               
               Cow position:chr15:20347955-20348440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 150

               
               
               Conread position:8-489
               
               
               Cow position:chr15:44073762-44073270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 152

               
               
               Conread position:9-365
               
               
               Cow position:chr15:21910982-21911348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 112

               
               
               Conread position:9-378
               
               
               Cow position:chr15:41793014-41793395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 151

               
               
               Conread position:9-382
               
               
               Cow position:chr15:22752113-22752485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:9-411
               
               
               Cow position:chr15:8937720-8937311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:294
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:9-487
               
               
               Cow position:chr15:4689344-4688858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 130

               
               
               Conread position:9-487
               
               
               Cow position:chr15:5498370-5497884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 151

               
               
               Conread position:9-487
               
               
               Cow position:chr15:47201246-47201743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 163

               
               
               Conread position:9-489
               
               
               Cow position:chr15:6120694-6120200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 150

               
               
               Conread position:9-489
               
               
               Cow position:chr15:7578476-7577989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:9-489
               
               
               Cow position:chr15:8028702-8029185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 73

               
               
               Conread position:9-489
               
               
               Cow position:chr15:14757499-14757004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 152

               
               
               Conread position:9-489
               
               
               Cow position:chr15:19725063-19724591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 145

               
               
               Conread position:9-489
               
               
               Cow position:chr15:21532824-21533314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 79

               
               
               Conread position:9-489
               
               
               Cow position:chr15:29884006-29884488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:9-489
               
               
               Cow position:chr15:37382278-37382766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 41

               
               
               Conread position:9-489
               
               
               Cow position:chr15:38683849-38684308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 104

               
               
               Conread position:10-461
               
               
               Cow position:chr15:1082747-1082282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 129

               
               
               Conread position:10-485
               
               
               Cow position:chr15:12440027-12439574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 129

               
               
               Conread position:10-489
               
               
               Cow position:chr15:36671472-36670999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 82

               
               
               Conread position:10-489
               
               
               Cow position:chr15:51910210-51910713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 158

               
               
               Conread position:12-315
               
               
               Cow position:chr15:25907880-25908181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):38, 27

               
               
               Conread position:16-489
               
               
               Cow position:chr15:23561329-23560858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 141

               
               
               Conread position:23-322
               
               
               Cow position:chr15:39406966-39407268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 137

               
               
               Conread position:23-424
               
               
               Cow position:chr15:24568751-24569165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 137

               
               
               Conread position:23-486
               
               
               Cow position:chr15:2925505-2925037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 136

               
               
               Conread position:24-489
               
               
               Cow position:chr15:19734498-19734976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 136

               
               
               Conread position:25-489
               
               
               Cow position:chr15:22713024-22712552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 122

               
               
               Conread position:27-489
               
               
               Cow position:chr15:2928556-2928082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 133

               
               
               Conread position:31-306
               
               
               Cow position:chr15:8001273-8001544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):18, 99

               
               
               Conread position:46-293
               
               
               Cow position:chr15:32225975-32225741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):40, 108

               
               
               Conread position:49-311
               
               
               Cow position:chr15:29899739-29899486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):37, 49

               
               
               Conread position:49-361
               
               
               Cow position:chr15:51683150-51682841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):27, 101

               
               
               Conread position:49-489
               
               
               Cow position:chr15:26158272-26157833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:322
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):242, 43

               
               
               Conread position:51-489
               
               
               Cow position:chr15:29340833-29341282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:52-243
               
               
               Cow position:chr15:24863000-24862813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):27, 50

               
               
               Conread position:53-322
               
               
               Cow position:chr15:30725981-30726233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):33, 81

               
               
               Conread position:54-308
               
               
               Cow position:chr15:52740361-52740116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 61

               
               
               Conread position:54-487
               
               
               Cow position:chr15:16515468-16515035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 75

               
               
               Conread position:54-489
               
               
               Cow position:chr15:10569913-10569500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 103

               
               
               Conread position:56-489
               
               
               Cow position:chr15:4628976-4629423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 100

               
               
               Conread position:56-489
               
               
               Cow position:chr15:42418687-42419123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 90

               
               
               Conread position:57-489
               
               
               Cow position:chr15:5198218-5197778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 98

               
               
               Conread position:58-268
               
               
               Cow position:chr15:31161030-31161236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):28, 97

               
               
               Conread position:63-318
               
               
               Cow position:chr15:6494302-6494054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 11

               
               
               Conread position:65-445
               
               
               Cow position:chr15:47842341-47841955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 44

               
               
               Conread position:69-413
               
               
               Cow position:chr15:29811470-29811845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):17, 216

               
               
               Conread position:69-487
               
               
               Cow position:chr15:22162029-22162431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 7

               
               
               Conread position:71-489
               
               
               Cow position:chr15:17236643-17237050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 70

               
               
               Conread position:72-290
               
               
               Cow position:chr15:40006730-40006507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):14, 50

               
               
               Conread position:72-487
               
               
               Cow position:chr15:33527325-33527734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:72-489
               
               
               Cow position:chr15:2080578-2080154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:74-453
               
               
               Cow position:chr15:6367244-6367628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 81

               
               
               Conread position:76-489
               
               
               Cow position:chr15:9909860-9910278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 77

               
               
               Conread position:83-486
               
               
               Cow position:chr15:52867862-52867462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:285
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):212, 51

               
               
               Conread position:84-327
               
               
               Cow position:chr15:4730863-4730634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):87, 61

               
               
               Conread position:84-489
               
               
               Cow position:chr15:10476896-10477302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 69

               
               
               Conread position:94-489
               
               
               Cow position:chr15:32689711-32690103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:287
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):139, 59

               
               
               Conread position:98-417
               
               
               Cow position:chr15:53356987-53357315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):99, 55

               
               
               Conread position:111-489
               
               
               Cow position:chr15:4815761-4815382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 123

               
               
               Conread position:119-489
               
               
               Cow position:chr15:36622472-36622839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 34

               
               
               Conread position:155-447
               
               
               Cow position:chr15:21453300-21453002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):140, 20

               
               
               Conread position:155-489
               
               
               Cow position:chr15:23774460-23774126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 25

               
               
               Conread position:159-425
               
               
               Cow position:chr15:33455524-33455258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):134, 16

               
               
               Conread position:168-489
               
               
               Cow position:chr15:52464091-52464425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):140, 104

               
               
               Conread position:180-489
               
               
               Cow position:chr15:5003958-5004260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 85

               
               
               Conread position:180-489
               
               
               Cow position:chr15:32717472-32717788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):147, 91

               
               
               Conread position:181-489
               
               
               Cow position:chr15:29273102-29273419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 90

               
               
               Conread position:182-489
               
               
               Cow position:chr15:23172936-23173246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:183-489
               
               
               Cow position:chr15:36355927-36356246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):138, 92

               
               
               Conread position:185-489
               
               
               Cow position:chr15:24097735-24097424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):108, 85

               
               
               Conread position:193-489
               
               
               Cow position:chr15:9522067-9522377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):115, 78

               
               
               Conread position:198-489
               
               
               Cow position:chr15:25554266-25553965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 68

               
               
               Conread position:201-486
               
               
               Cow position:chr15:4077009-4077303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):107, 71

               
               
               Conread position:201-489
               
               
               Cow position:chr15:17296123-17295823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):79, 39

               
               
               Conread position:206-474
               
               
               Cow position:chr15:51632224-51631961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 60

               
               
               Conread position:213-489
               
               
               Cow position:chr15:2021338-2021624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):95, 57

               
               
               Conread position:233-487
               
               
               Cow position:chr15:11290689-11290945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:234-489
               
               
               Cow position:chr15:1601657-1601389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):88, 36

               
               
               Conread position:251-489
               
               
               Cow position:chr15:26077798-26077557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):77, 20

               
               
               Conread position:255-487
               
               
               Cow position:chr15:1298586-1298828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):73, 15

               
               
               Conread position:256-489
               
               
               Cow position:chr15:38937835-38937591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):64, 14

               
               
               Conread position:314-489
               
               
               Cow position:chr15:4380327-4380499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):75, 43

               
               
               Conread position:314-489
               
               
               Cow position:chr15:4654466-4654291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:321-489
               
               
               Cow position:chr15:5197341-5197173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):65, 39

               
               
               Conread position:1-213
               
               
               Cow position:chr16:22124724-22124935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:176
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):48, 121

               
               
               Conread position:1-228
               
               
               Cow position:chr16:14568819-14569045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:181
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):49, 113

               
               
               Conread position:1-228
               
               
               Cow position:chr16:24974484-24974704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):49, 139

               
               
               Conread position:1-258
               
               
               Cow position:chr16:10202958-10203211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:200
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-278
               
               
               Cow position:chr16:34533391-34533119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):150, 43

               
               
               Conread position:1-280
               
               
               Cow position:chr16:51043077-51042803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 159

               
               
               Conread position:1-285
               
               
               Cow position:chr16:7701751-7701461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:1-293
               
               
               Cow position:chr16:45683667-45683372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):49, 26

               
               
               Conread position:1-293
               
               
               Cow position:chr16:47518285-47517994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 75

               
               
               Conread position:1-299
               
               
               Cow position:chr16:41858638-41858340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-312
               
               
               Cow position:chr16:15805278-15804975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):48, 97

               
               
               Conread position:1-319
               
               
               Cow position:chr16:6379663-6379977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 159

               
               
               Conread position:1-321
               
               
               Cow position:chr16:14758165-14757846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 139

               
               
               Conread position:1-322
               
               
               Cow position:chr16:19409379-19409697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr16:24229212-24228899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 105

               
               
               Conread position:1-322
               
               
               Cow position:chr16:46223528-46223853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-332
               
               
               Cow position:chr16:48677171-48677497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):45, 151

               
               
               Conread position:1-345
               
               
               Cow position:chr16:55151299-55150964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 140

               
               
               Conread position:1-347
               
               
               Cow position:chr16:49169914-49170243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-349
               
               
               Cow position:chr16:44689180-44689529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):49, 168

               
               
               Conread position:1-355
               
               
               Cow position:chr16:30143990-30144329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):49, 89

               
               
               Conread position:1-411
               
               
               Cow position:chr16:2223956-2224396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-412
               
               
               Cow position:chr16:32118553-32118131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 124

               
               
               Conread position:1-414
               
               
               Cow position:chr16:42745508-42745922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-421
               
               
               Cow position:chr16:51641223-51640792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-433
               
               
               Cow position:chr16:49577950-49577522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 155

               
               
               Conread position:1-440
               
               
               Cow position:chr16:5350532-5350984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-441
               
               
               Cow position:chr16:44676330-44675876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-446
               
               
               Cow position:chr16:23737629-23737211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):374, 63

               
               
               Conread position:1-477
               
               
               Cow position:chr16:28022094-28022570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-478
               
               
               Cow position:chr16:13421950-13422436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 157

               
               
               Conread position:1-478
               
               
               Cow position:chr16:53509544-53510038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 170

               
               
               Conread position:1-484
               
               
               Cow position:chr16:14029180-14029661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 160

               
               
               Conread position:1-486
               
               
               Cow position:chr16:50190146-50190636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 161

               
               
               Conread position:1-487
               
               
               Cow position:chr16:8813129-8813626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-487
               
               
               Cow position:chr16:39033376-39033856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 129

               
               
               Conread position:1-488
               
               
               Cow position:chr16:16096173-16095675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 161

               
               
               Conread position:1-489
               
               
               Cow position:chr16:192963-193460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr16:840246-839756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr16:1563411-1563913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr16:2724248-2724749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr16:3148065-3148561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 111

               
               
               Conread position:1-489
               
               
               Cow position:chr16:3769032-3769536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr16:4461352-4461836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr16:5435801-5435300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr16:5833795-5833276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 14

               
               
               Conread position:1-489
               
               
               Cow position:chr16:7467584-7467088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 161

               
               
               Conread position:1-489
               
               
               Cow position:chr16:10441214-10440714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr16:11054943-11054466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 137

               
               
               Conread position:1-489
               
               
               Cow position:chr16:11632868-11633369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr16:12160317-12160805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 32

               
               
               Conread position:1-489
               
               
               Cow position:chr16:14040401-14039901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr16:14662147-14662633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr16:15188031-15187543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:1-489
               
               
               Cow position:chr16:15495426-15494933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:1-489
               
               
               Cow position:chr16:15979402-15979903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr16:23248986-23249480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 47

               
               
               Conread position:1-489
               
               
               Cow position:chr16:23810488-23809996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 102

               
               
               Conread position:1-489
               
               
               Cow position:chr16:23986289-23985788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr16:24240424-24240925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr16:25043023-25042527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 156

               
               
               Conread position:1-489
               
               
               Cow position:chr16:25344951-25344453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 102

               
               
               Conread position:1-489
               
               
               Cow position:chr16:25444852-25444352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 158

               
               
               Conread position:1-489
               
               
               Cow position:chr16:26666686-26666179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 266

               
               
               Conread position:1-489
               
               
               Cow position:chr16:27013366-27012877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 25

               
               
               Conread position:1-489
               
               
               Cow position:chr16:28206135-28206636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr16:28468147-28468648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr16:43894287-43894787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:1-489
               
               
               Cow position:chr16:45534429-45533937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 80

               
               
               Conread position:1-489
               
               
               Cow position:chr16:45654594-45655117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 164

               
               
               Conread position:1-489
               
               
               Cow position:chr16:46101643-46102142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 161

               
               
               Conread position:1-489
               
               
               Cow position:chr16:47017792-47018274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 112

               
               
               Conread position:1-489
               
               
               Cow position:chr16:48411620-48411110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 168

               
               
               Conread position:1-489
               
               
               Cow position:chr16:52527204-52526708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 37

               
               
               Conread position:1-489
               
               
               Cow position:chr16:54322434-54322943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr16:56913265-56913759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:2-432
               
               
               Cow position:chr16:15369966-15369529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 158

               
               
               Conread position:4-291
               
               
               Cow position:chr16:7673404-7673692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:187
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):46, 157

               
               
               Conread position:4-322
               
               
               Cow position:chr16:18205204-18204886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 128

               
               
               Conread position:4-356
               
               
               Cow position:chr16:48494946-48495310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-487
               
               
               Cow position:chr16:7457014-7457505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 60

               
               
               Conread position:4-489
               
               
               Cow position:chr16:2232754-2233251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 155

               
               
               Conread position:4-489
               
               
               Cow position:chr16:25157435-25157919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 155

               
               
               Conread position:4-489
               
               
               Cow position:chr16:26500603-26500138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 133

               
               
               Conread position:4-489
               
               
               Cow position:chr16:41163805-41164296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 34

               
               
               Conread position:5-322
               
               
               Cow position:chr16:11007696-11007363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 166

               
               
               Conread position:5-327
               
               
               Cow position:chr16:22810602-22810917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:243
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):44, 120

               
               
               Conread position:5-424
               
               
               Cow position:chr16:48341236-48341667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 132

               
               
               Conread position:5-460
               
               
               Cow position:chr16:9786289-9785812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 157

               
               
               Conread position:5-489
               
               
               Cow position:chr16:21018530-21018034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 101

               
               
               Conread position:5-489
               
               
               Cow position:chr16:29158572-29158097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 155

               
               
               Conread position:6-487
               
               
               Cow position:chr16:31426025-31425527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 80

               
               
               Conread position:7-447
               
               
               Cow position:chr16:27817973-27818418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 67

               
               
               Conread position:7-449
               
               
               Cow position:chr16:23563403-23562969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 17

               
               
               Conread position:8-241
               
               
               Cow position:chr16:46254284-46254519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):10, 85

               
               
               Conread position:8-467
               
               
               Cow position:chr16:47367938-47367487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:333
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):39, 105

               
               
               Conread position:8-489
               
               
               Cow position:chr16:13601653-13602162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:347
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):41, 92

               
               
               Conread position:9-287
               
               
               Cow position:chr16:17665087-17664802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:216
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):28, 152

               
               
               Conread position:9-313
               
               
               Cow position:chr16:56149746-56149447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:9-321
               
               
               Cow position:chr16:54297918-54297626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):121, 55

               
               
               Conread position:9-322
               
               
               Cow position:chr16:6389688-6389998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:9-322
               
               
               Cow position:chr16:44972776-44973089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 26

               
               
               Conread position:9-486
               
               
               Cow position:chr16:340704-340260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:318
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:9-487
               
               
               Cow position:chr16:3332857-3332384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:9-487
               
               
               Cow position:chr16:20634276-20634740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 141

               
               
               Conread position:9-489
               
               
               Cow position:chr16:8481646-8482145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 151

               
               
               Conread position:9-489
               
               
               Cow position:chr16:44256153-44256650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 277

               
               
               Conread position:10-467
               
               
               Cow position:chr16:43851392-43851842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:307
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):38, 28

               
               
               Conread position:10-489
               
               
               Cow position:chr16:51087749-51087259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 149

               
               
               Conread position:11-476
               
               
               Cow position:chr16:49515815-49516296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 149

               
               
               Conread position:13-489
               
               
               Cow position:chr16:43562431-43562920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:15-489
               
               
               Cow position:chr16:37670547-37671022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 145

               
               
               Conread position:15-489
               
               
               Cow position:chr16:53225372-53225845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 150

               
               
               Conread position:19-489
               
               
               Cow position:chr16:44089-43637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 13

               
               
               Conread position:23-489
               
               
               Cow position:chr16:2305314-2304835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 77

               
               
               Conread position:24-489
               
               
               Cow position:chr16:49742576-49743048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 136

               
               
               Conread position:31-481
               
               
               Cow position:chr16:7136904-7137358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 129

               
               
               Conread position:31-487
               
               
               Cow position:chr16:600366-599902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 129

               
               
               Conread position:46-414
               
               
               Cow position:chr16:5844841-5844457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 109

               
               
               Conread position:49-318
               
               
               Cow position:chr16:31001648-31001395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):37, 100

               
               
               Conread position:49-489
               
               
               Cow position:chr16:25169148-25168712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 77

               
               
               Conread position:51-489
               
               
               Cow position:chr16:55682430-55681988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 104

               
               
               Conread position:57-489
               
               
               Cow position:chr16:37058086-37058534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 98

               
               
               Conread position:59-489
               
               
               Cow position:chr16:28267805-28268240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 54

               
               
               Conread position:61-488
               
               
               Cow position:chr16:20434488-20434069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):25, 94

               
               
               Conread position:64-487
               
               
               Cow position:chr16:43770250-43770674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 65

               
               
               Conread position:71-431
               
               
               Cow position:chr16:7541378-7541019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 13

               
               
               Conread position:83-489
               
               
               Cow position:chr16:4972637-4973050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 72

               
               
               Conread position:84-489
               
               
               Cow position:chr16:14351797-14352206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 70

               
               
               Conread position:84-489
               
               
               Cow position:chr16:34833303-34833687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:263
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):314, 64

               
               
               Conread position:93-440
               
               
               Cow position:chr16:8871564-8871915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 60

               
               
               Conread position:101-487
               
               
               Cow position:chr16:12737150-12736757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 52

               
               
               Conread position:104-322
               
               
               Cow position:chr16:16237111-16237323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):85, 49

               
               
               Conread position:105-489
               
               
               Cow position:chr16:41576107-41575729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:288
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:107-488
               
               
               Cow position:chr16:23065862-23065479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:285
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):216, 44

               
               
               Conread position:114-489
               
               
               Cow position:chr16:55591133-55591505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):77, 39

               
               
               Conread position:115-489
               
               
               Cow position:chr16:45560157-45559781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 38

               
               
               Conread position:119-487
               
               
               Cow position:chr16:25964750-25964388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 34

               
               
               Conread position:120-489
               
               
               Cow position:chr16:44049074-44049448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 33

               
               
               Conread position:123-389
               
               
               Cow position:chr16:39457234-39456965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):92, 30

               
               
               Conread position:132-484
               
               
               Cow position:chr16:41804612-41804966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 21

               
               
               Conread position:155-489
               
               
               Cow position:chr16:7673641-7673986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:219
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):140, 72

               
               
               Conread position:157-489
               
               
               Cow position:chr16:7155415-7155078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 12

               
               
               Conread position:157-489
               
               
               Cow position:chr16:41515950-41515607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 16

               
               
               Conread position:158-489
               
               
               Cow position:chr16:32326678-32326339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:159-472
               
               
               Cow position:chr16:4367441-4367117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):14, 115

               
               
               Conread position:179-489
               
               
               Cow position:chr16:41623893-41624205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 40

               
               
               Conread position:180-489
               
               
               Cow position:chr16:10859528-10859852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:180-489
               
               
               Cow position:chr16:36247266-36246948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):114, 86

               
               
               Conread position:182-489
               
               
               Cow position:chr16:37454692-37455006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 61

               
               
               Conread position:183-475
               
               
               Cow position:chr16:55868115-55867817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):50, 88

               
               
               Conread position:183-489
               
               
               Cow position:chr16:49219159-49219474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 87

               
               
               Conread position:184-484
               
               
               Cow position:chr16:37925191-37925505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 83

               
               
               Conread position:184-487
               
               
               Cow position:chr16:20204791-20204481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 48

               
               
               Conread position:184-489
               
               
               Cow position:chr16:45704005-45704319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 57

               
               
               Conread position:185-368
               
               
               Cow position:chr16:39645776-39645594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):158, 81

               
               
               Conread position:185-397
               
               
               Cow position:chr16:13790828-13790617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):109, 90

               
               
               Conread position:186-484
               
               
               Cow position:chr16:52856055-52856355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):91, 54

               
               
               Conread position:193-489
               
               
               Cow position:chr16:23711503-23711812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):30, 40

               
               
               Conread position:204-486
               
               
               Cow position:chr16:12244271-12244563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):8, 30

               
               
               Conread position:206-447
               
               
               Cow position:chr16:54703267-54703014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):102, 64

               
               
               Conread position:207-471
               
               
               Cow position:chr16:29093891-29093614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):94, 63

               
               
               Conread position:240-471
               
               
               Cow position:chr16:15409348-15409596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):65, 34

               
               
               Conread position:249-474
               
               
               Cow position:chr16:54287269-54287027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:251-477
               
               
               Cow position:chr16:20201799-20201558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):29, 19

               
               
               Conread position:314-484
               
               
               Cow position:chr16:14569547-14569717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):75, 43

               
               
               Conread position:314-489
               
               
               Cow position:chr16:37486606-37486782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 45

               
               
               Conread position:322-469
               
               
               Cow position:chr16:24702448-24702593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:322-489
               
               
               Cow position:chr16:6264335-6264502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):64, 35

               
               
               Conread position:322-489
               
               
               Cow position:chr16:39475470-39475305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):62, 36

               
               
               Conread position:329-489
               
               
               Cow position:chr16:20643123-20642964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):57, 30

               
               
               Conread position:329-489
               
               
               Cow position:chr16:49511166-49511325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):62, 30

               
               
               Conread position:332-489
               
               
               Cow position:chr16:53991587-53991429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):84, 27

               
               
               Conread position:1-241
               
               
               Cow position:chr17:11102538-11102791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 174

               
               
               Conread position:1-268
               
               
               Cow position:chr17:17478655-17478390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):49, 154

               
               
               Conread position:1-307
               
               
               Cow position:chr17:19998627-19998324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 126

               
               
               Conread position:1-322
               
               
               Cow position:chr17:923157-922840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr17:2034028-2033710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 21

               
               
               Conread position:1-332
               
               
               Cow position:chr17:41014696-41014365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 152

               
               
               Conread position:1-397
               
               
               Cow position:chr17:40802301-40801879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 189

               
               
               Conread position:1-432
               
               
               Cow position:chr17:8450246-8449805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 154

               
               
               Conread position:1-432
               
               
               Cow position:chr17:29083700-29083269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 128

               
               
               Conread position:1-446
               
               
               Cow position:chr17:7615154-7615609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:328
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):24, 129

               
               
               Conread position:1-450
               
               
               Cow position:chr17:2201833-2201371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-460
               
               
               Cow position:chr17:11913215-11913685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 152

               
               
               Conread position:1-484
               
               
               Cow position:chr17:2244537-2245025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 164

               
               
               Conread position:1-487
               
               
               Cow position:chr17:50578-51062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 26

               
               
               Conread position:1-488
               
               
               Cow position:chr17:22563676-22563181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 154

               
               
               Conread position:1-489
               
               
               Cow position:chr17:148444-147957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr17:1568686-1569179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr17:1654223-1654727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:344
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):49, 167

               
               
               Conread position:1-489
               
               
               Cow position:chr17:2177510-2177015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 163

               
               
               Conread position:1-489
               
               
               Cow position:chr17:3306121-3305610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr17:4063865-4063375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 89

               
               
               Conread position:1-489
               
               
               Cow position:chr17:6082032-6081540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 135

               
               
               Conread position:1-489
               
               
               Cow position:chr17:6123319-6122818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr17:6263390-6262891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 158

               
               
               Conread position:1-489
               
               
               Cow position:chr17:11083604-11084100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 41

               
               
               Conread position:1-489
               
               
               Cow position:chr17:16117941-16118424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 58

               
               
               Conread position:1-489
               
               
               Cow position:chr17:16446946-16447443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 66

               
               
               Conread position:1-489
               
               
               Cow position:chr17:16904115-16903620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr17:18099541-18100039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 81

               
               
               Conread position:1-489
               
               
               Cow position:chr17:18591936-18591457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 158

               
               
               Conread position:1-489
               
               
               Cow position:chr17:21666535-21666039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr17:24026450-24026948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 105

               
               
               Conread position:1-489
               
               
               Cow position:chr17:25739832-25739331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr17:29471966-29471474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr17:33792614-33792118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 168

               
               
               Conread position:1-489
               
               
               Cow position:chr17:36265746-36266224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 13

               
               
               Conread position:1-489
               
               
               Cow position:chr17:36790594-36790105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 51

               
               
               Conread position:2-313
               
               
               Cow position:chr17:32456914-32457235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):45, 165

               
               
               Conread position:3-322
               
               
               Cow position:chr17:12477399-12477086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):48, 120

               
               
               Conread position:4-474
               
               
               Cow position:chr17:2839545-2839075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 127

               
               
               Conread position:4-487
               
               
               Cow position:chr17:20093631-20094120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 157

               
               
               Conread position:4-489
               
               
               Cow position:chr17:18777303-18777795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 107

               
               
               Conread position:5-219
               
               
               Cow position:chr17:18884844-18885059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):45, 155

               
               
               Conread position:5-322
               
               
               Cow position:chr17:997648-997958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 68

               
               
               Conread position:5-484
               
               
               Cow position:chr17:29156913-29156418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 155

               
               
               Conread position:5-489
               
               
               Cow position:chr17:4211463-4210964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:5-489
               
               
               Cow position:chr17:14243364-14242864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 179

               
               
               Conread position:7-382
               
               
               Cow position:chr17:13725792-13725407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 153

               
               
               Conread position:8-482
               
               
               Cow position:chr17:144689-145156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 114

               
               
               Conread position:9-375
               
               
               Cow position:chr17:979660-980035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 77

               
               
               Conread position:9-484
               
               
               Cow position:chr17:18201251-18200777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:9-487
               
               
               Cow position:chr17:23337532-23338012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 136

               
               
               Conread position:9-489
               
               
               Cow position:chr17:2079156-2078678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 66

               
               
               Conread position:9-489
               
               
               Cow position:chr17:20215608-20215126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 151

               
               
               Conread position:10-287
               
               
               Cow position:chr17:13716776-13717043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):40, 151

               
               
               Conread position:23-432
               
               
               Cow position:chr17:22134709-22134289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 138

               
               
               Conread position:23-489
               
               
               Cow position:chr17:15854247-15853769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 132

               
               
               Conread position:24-302
               
               
               Cow position:chr17:13916334-13916606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):24, 66

               
               
               Conread position:49-264
               
               
               Cow position:chr17:38617121-38616911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):37, 106

               
               
               Conread position:49-489
               
               
               Cow position:chr17:15374865-15374440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 66

               
               
               Conread position:52-320
               
               
               Cow position:chr17:25567677-25567419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):33, 104

               
               
               Conread position:72-485
               
               
               Cow position:chr17:1456920-1457337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 64

               
               
               Conread position:72-489
               
               
               Cow position:chr17:14028887-14029311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:72-489
               
               
               Cow position:chr17:19369908-19369479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:310
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:84-489
               
               
               Cow position:chr17:4635345-4635740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 9

               
               
               Conread position:87-455
               
               
               Cow position:chr17:38829321-38828952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:108-470
               
               
               Cow position:chr17:29041483-29041845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):184, 44

               
               
               Conread position:111-489
               
               
               Cow position:chr17:1672716-1672335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 42

               
               
               Conread position:115-475
               
               
               Cow position:chr17:38629540-38629205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):269, 38

               
               
               Conread position:156-489
               
               
               Cow position:chr17:31233051-31232712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 110

               
               
               Conread position:159-396
               
               
               Cow position:chr17:42313260-42313012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):138, 19

               
               
               Conread position:160-489
               
               
               Cow position:chr17:2583760-2583427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 15

               
               
               Conread position:180-489
               
               
               Cow position:chr17:18198711-18198389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):148, 86

               
               
               Conread position:186-489
               
               
               Cow position:chr17:4085414-4085102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):136, 61

               
               
               Conread position:198-489
               
               
               Cow position:chr17:29950551-29950250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 72

               
               
               Conread position:201-489
               
               
               Cow position:chr17:18242316-18242033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):133, 70

               
               
               Conread position:204-489
               
               
               Cow position:chr17:20055450-20055162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):99, 47

               
               
               Conread position:206-489
               
               
               Cow position:chr17:29897966-29897678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):117, 39

               
               
               Conread position:240-483
               
               
               Cow position:chr17:14871980-14871724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):55, 30

               
               
               Conread position:251-487
               
               
               Cow position:chr17:10270073-10270315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):57, 19

               
               
               Conread position:264-489
               
               
               Cow position:chr17:4570486-4570248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):64, 33

               
               
               Conread position:327-489
               
               
               Cow position:chr17:15364367-15364205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):37, 111

               
               
               Conread position:341-489
               
               
               Cow position:chr17:41014070-41013920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:370-489
               
               
               Cow position:chr17:16464234-16464118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1-217
               
               
               Cow position:chr18:1955112-1955328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-228
               
               
               Cow position:chr18:40722082-40721864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):85, 52

               
               
               Conread position:1-264
               
               
               Cow position:chr18:25003455-25003712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):50, 157

               
               
               Conread position:1-266
               
               
               Cow position:chr18:3150802-3151066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):49, 23

               
               
               Conread position:1-292
               
               
               Cow position:chr18:51692063-51692352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 157

               
               
               Conread position:1-295
               
               
               Cow position:chr18:51713304-51713597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr18:7649407-7649093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 13

               
               
               Conread position:1-322
               
               
               Cow position:chr18:9365302-9364991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr18:29585853-29586171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-328
               
               
               Cow position:chr18:50114529-50114847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 13

               
               
               Conread position:1-352
               
               
               Cow position:chr18:36133510-36133167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:249
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-353
               
               
               Cow position:chr18:27833668-27834014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-361
               
               
               Cow position:chr18:33158281-33157935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):14, 87

               
               
               Conread position:1-361
               
               
               Cow position:chr18:43638150-43637796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):49, 76

               
               
               Conread position:1-365
               
               
               Cow position:chr18:32121923-32122288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 32

               
               
               Conread position:1-367
               
               
               Cow position:chr18:4954893-4954531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 85

               
               
               Conread position:1-396
               
               
               Cow position:chr18:26306024-26305624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 53

               
               
               Conread position:1-410
               
               
               Cow position:chr18:36224193-36223780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-413
               
               
               Cow position:chr18:29241080-29240655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 163

               
               
               Conread position:1-414
               
               
               Cow position:chr18:27194262-27193842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-420
               
               
               Cow position:chr18:51272380-51272805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:307
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):46, 66

               
               
               Conread position:1-425
               
               
               Cow position:chr18:55699760-55700197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 144

               
               
               Conread position:1-433
               
               
               Cow position:chr18:7050344-7049899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 161

               
               
               Conread position:1-475
               
               
               Cow position:chr18:16390470-16390934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 161

               
               
               Conread position:1-481
               
               
               Cow position:chr18:47985626-47985162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 86

               
               
               Conread position:1-483
               
               
               Cow position:chr18:15688740-15688288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1-484
               
               
               Cow position:chr18:41208692-41208203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:333
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):43, 137

               
               
               Conread position:1-484
               
               
               Cow position:chr18:54065321-54065809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 154

               
               
               Conread position:1-486
               
               
               Cow position:chr18:33522991-33522488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr18:2853029-2853532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr18:5536729-5536230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 66

               
               
               Conread position:1-489
               
               
               Cow position:chr18:12269914-12269413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr18:13508325-13508803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:1-489
               
               
               Cow position:chr18:14419736-14419235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr18:16094637-16094143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 12

               
               
               Conread position:1-489
               
               
               Cow position:chr18:16172859-16173355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 29

               
               
               Conread position:1-489
               
               
               Cow position:chr18:17944275-17943770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 164

               
               
               Conread position:1-489
               
               
               Cow position:chr18:21304263-21303759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr18:25355274-25354775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:1-489
               
               
               Cow position:chr18:25972321-25972802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 80

               
               
               Conread position:1-489
               
               
               Cow position:chr18:28968530-28969031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr18:29862849-29863346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr18:33607991-33607493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 126

               
               
               Conread position:1-489
               
               
               Cow position:chr18:36512386-36511892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr18:36770784-36771274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 96

               
               
               Conread position:1-489
               
               
               Cow position:chr18:37509717-37509226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 132

               
               
               Conread position:1-489
               
               
               Cow position:chr18:38341788-38342253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 156

               
               
               Conread position:1-489
               
               
               Cow position:chr18:40195870-40195371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr18:42242581-42243096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 128

               
               
               Conread position:1-489
               
               
               Cow position:chr18:43430757-43430265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-489
               
               
               Cow position:chr18:51485346-51484848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr18:52656555-52656065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 161

               
               
               Conread position:1-489
               
               
               Cow position:chr18:54033454-54032976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 94

               
               
               Conread position:1-489
               
               
               Cow position:chr18:55555010-55554509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:2-321
               
               
               Cow position:chr18:17341692-17341366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):47, 129

               
               
               Conread position:4-468
               
               
               Cow position:chr18:30034955-30035450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 255

               
               
               Conread position:4-484
               
               
               Cow position:chr18:33407047-33406571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 119

               
               
               Conread position:4-489
               
               
               Cow position:chr18:41837334-41837832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:5-243
               
               
               Cow position:chr18:35637568-35637334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:190
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):45, 146

               
               
               Conread position:5-488
               
               
               Cow position:chr18:6733218-6733704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:5-489
               
               
               Cow position:chr18:14127533-14128028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 33

               
               
               Conread position:5-489
               
               
               Cow position:chr18:23659140-23659636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 30

               
               
               Conread position:5-489
               
               
               Cow position:chr18:42080265-42080758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 101

               
               
               Conread position:6-305
               
               
               Cow position:chr18:6878220-6878518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 154

               
               
               Conread position:6-488
               
               
               Cow position:chr18:35057765-35057285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 122

               
               
               Conread position:6-489
               
               
               Cow position:chr18:39002391-39002852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 26

               
               
               Conread position:8-322
               
               
               Cow position:chr18:45614529-45614219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):45, 138

               
               
               Conread position:8-475
               
               
               Cow position:chr18:17334992-17335468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 80

               
               
               Conread position:8-489
               
               
               Cow position:chr18:4890252-4889775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:327
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):78, 56

               
               
               Conread position:8-489
               
               
               Cow position:chr18:5570273-5569799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 132

               
               
               Conread position:8-489
               
               
               Cow position:chr18:11779073-11778601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 113

               
               
               Conread position:8-489
               
               
               Cow position:chr18:17324127-17323638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 153

               
               
               Conread position:8-489
               
               
               Cow position:chr18:26845821-26845357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:325
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):28, 22

               
               
               Conread position:8-489
               
               
               Cow position:chr18:30876525-30877007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 73

               
               
               Conread position:8-489
               
               
               Cow position:chr18:33498226-33498712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:323
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):44, 28

               
               
               Conread position:8-489
               
               
               Cow position:chr18:52699020-52698531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:339
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):42, 78

               
               
               Conread position:8-489
               
               
               Cow position:chr18:55136728-55137211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:323
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):31, 25

               
               
               Conread position:9-245
               
               
               Cow position:chr18:24293270-24293034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 151

               
               
               Conread position:9-305
               
               
               Cow position:chr18:7965679-7965398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):41, 116

               
               
               Conread position:9-355
               
               
               Cow position:chr18:50224937-50225259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):61, 50

               
               
               Conread position:9-360
               
               
               Cow position:chr18:42746981-42746626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 78

               
               
               Conread position:9-364
               
               
               Cow position:chr18:14479867-14479526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):102, 56

               
               
               Conread position:9-469
               
               
               Cow position:chr18:37692534-37693009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:9-483
               
               
               Cow position:chr18:15172582-15172119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 94

               
               
               Conread position:9-484
               
               
               Cow position:chr18:12241563-12241110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 153

               
               
               Conread position:9-487
               
               
               Cow position:chr18:36649139-36648665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 150

               
               
               Conread position:9-489
               
               
               Cow position:chr18:16134910-16135406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:9-489
               
               
               Cow position:chr18:36122107-36122588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:345
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:10-484
               
               
               Cow position:chr18:29797334-29797822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 150

               
               
               Conread position:10-487
               
               
               Cow position:chr18:10113740-10113275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 145

               
               
               Conread position:13-353
               
               
               Cow position:chr18:51487164-51487497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:239
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):57, 126

               
               
               Conread position:17-486
               
               
               Cow position:chr18:33851285-33850791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 143

               
               
               Conread position:22-489
               
               
               Cow position:chr18:14816946-14816471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:306
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):64, 49

               
               
               Conread position:23-484
               
               
               Cow position:chr18:44261791-44261331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 54

               
               
               Conread position:25-304
               
               
               Cow position:chr18:44229510-44229772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):25, 113

               
               
               Conread position:34-295
               
               
               Cow position:chr18:51679489-51679742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):17, 86

               
               
               Conread position:35-489
               
               
               Cow position:chr18:1022310-1022761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:52-405
               
               
               Cow position:chr18:36477487-36477136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):34, 84

               
               
               Conread position:55-346
               
               
               Cow position:chr18:4369646-4369930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):31, 104

               
               
               Conread position:91-489
               
               
               Cow position:chr18:55133453-55133843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):9, 68

               
               
               Conread position:95-320
               
               
               Cow position:chr18:42466694-42466900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:104-326
               
               
               Cow position:chr18:31563826-31564034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):9, 50

               
               
               Conread position:104-473
               
               
               Cow position:chr18:16025005-16025385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 50

               
               
               Conread position:113-322
               
               
               Cow position:chr18:2439414-2439613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):20, 44

               
               
               Conread position:115-489
               
               
               Cow position:chr18:43284681-43285047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 38

               
               
               Conread position:157-489
               
               
               Cow position:chr18:36776875-36776534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 23

               
               
               Conread position:159-486
               
               
               Cow position:chr18:7930994-7931318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):71, 15

               
               
               Conread position:165-479
               
               
               Cow position:chr18:32259095-32259397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):189, 63

               
               
               Conread position:173-460
               
               
               Cow position:chr18:48501066-48500788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):217, 86

               
               
               Conread position:184-389
               
               
               Cow position:chr18:24219116-24219333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):117, 82

               
               
               Conread position:200-321
               
               
               Cow position:chr18:21199543-21199662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):77, 66

               
               
               Conread position:253-484
               
               
               Cow position:chr18:48240840-48240615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 17

               
               
               Conread position:321-484
               
               
               Cow position:chr18:22790996-22791159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):57, 130

               
               
               Conread position:321-489
               
               
               Cow position:chr18:31564255-31564429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):24, 126

               
               
               Conread position:1-244
               
               
               Cow position:chr19:33932706-33932945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-288
               
               
               Cow position:chr19:9542938-9543227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):44, 162

               
               
               Conread position:1-294
               
               
               Cow position:chr19:29365292-29365008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:1-315
               
               
               Cow position:chr19:30518498-30518188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-318
               
               
               Cow position:chr19:7346146-7345834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 12

               
               
               Conread position:1-318
               
               
               Cow position:chr19:15068555-15068861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 26

               
               
               Conread position:1-320
               
               
               Cow position:chr19:47670875-47670553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 156

               
               
               Conread position:1-322
               
               
               Cow position:chr19:14581047-14580727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 160

               
               
               Conread position:1-322
               
               
               Cow position:chr19:19500927-19501244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 158

               
               
               Conread position:1-322
               
               
               Cow position:chr19:32683341-32683012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):49, 186

               
               
               Conread position:1-322
               
               
               Cow position:chr19:44216084-44216404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-325
               
               
               Cow position:chr19:48218610-48218927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:236
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):50, 141

               
               
               Conread position:1-326
               
               
               Cow position:chr19:15842706-15843033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 163

               
               
               Conread position:1-326
               
               
               Cow position:chr19:42725795-42725459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 90

               
               
               Conread position:1-363
               
               
               Cow position:chr19:20433478-20433847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:1-379
               
               
               Cow position:chr19:54542229-54542617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 83

               
               
               Conread position:1-396
               
               
               Cow position:chr19:15797185-15796781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-450
               
               
               Cow position:chr19:34985843-34985392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 156

               
               
               Conread position:1-453
               
               
               Cow position:chr19:12600939-12601399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-460
               
               
               Cow position:chr19:20671841-20672302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 130

               
               
               Conread position:1-482
               
               
               Cow position:chr19:930584-930090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-482
               
               
               Cow position:chr19:28794569-28795054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:1-482
               
               
               Cow position:chr19:36352033-36351540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-484
               
               
               Cow position:chr19:7491845-7491356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 8

               
               
               Conread position:1-484
               
               
               Cow position:chr19:25085958-25085477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-485
               
               
               Cow position:chr19:12209166-12209666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 158

               
               
               Conread position:1-489
               
               
               Cow position:chr19:42101-41597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 164

               
               
               Conread position:1-489
               
               
               Cow position:chr19:1152425-1151926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 247

               
               
               Conread position:1-489
               
               
               Cow position:chr19:2260684-2261179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 84

               
               
               Conread position:1-489
               
               
               Cow position:chr19:2588949-2588453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr19:5733256-5732759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 153

               
               
               Conread position:1-489
               
               
               Cow position:chr19:7065421-7064948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 88

               
               
               Conread position:1-489
               
               
               Cow position:chr19:12652640-12652134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr19:28597135-28596640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 89

               
               
               Conread position:1-489
               
               
               Cow position:chr19:29367293-29366792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr19:29624800-29624300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:1-489
               
               
               Cow position:chr19:30937452-30937966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 164

               
               
               Conread position:1-489
               
               
               Cow position:chr19:33877181-33876680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr19:33945331-33944831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr19:35381327-35381810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 63

               
               
               Conread position:1-489
               
               
               Cow position:chr19:35843611-35843118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 30

               
               
               Conread position:1-489
               
               
               Cow position:chr19:37844013-37844516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 126

               
               
               Conread position:1-489
               
               
               Cow position:chr19:39181770-39182276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 90

               
               
               Conread position:1-489
               
               
               Cow position:chr19:40790593-40791092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr19:40848725-40849225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 68

               
               
               Conread position:1-489
               
               
               Cow position:chr19:44839425-44839905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr19:48534486-48533992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:2-293
               
               
               Cow position:chr19:5023689-5023965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 62

               
               
               Conread position:4-322
               
               
               Cow position:chr19:42240859-42241174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 10

               
               
               Conread position:4-322
               
               
               Cow position:chr19:50833145-50833456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-326
               
               
               Cow position:chr19:42274465-42274779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 155

               
               
               Conread position:4-368
               
               
               Cow position:chr19:39077195-39076838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 141

               
               
               Conread position:5-278
               
               
               Cow position:chr19:31762377-31762659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):16, 120

               
               
               Conread position:5-487
               
               
               Cow position:chr19:1581144-1581643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 155

               
               
               Conread position:5-489
               
               
               Cow position:chr19:28611125-28610641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:6-290
               
               
               Cow position:chr19:2065365-2065084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):44, 142

               
               
               Conread position:8-228
               
               
               Cow position:chr19:41212503-41212719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):42, 77

               
               
               Conread position:8-295
               
               
               Cow position:chr19:2821010-2820728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):40, 152

               
               
               Conread position:8-302
               
               
               Cow position:chr19:42871121-42870824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 19

               
               
               Conread position:8-484
               
               
               Cow position:chr19:42580568-42581046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 133

               
               
               Conread position:8-488
               
               
               Cow position:chr19:42647639-42648119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 12

               
               
               Conread position:8-489
               
               
               Cow position:chr19:39602736-39603206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:320
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):42, 81

               
               
               Conread position:8-489
               
               
               Cow position:chr19:46873267-46873761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 67

               
               
               Conread position:9-322
               
               
               Cow position:chr19:3032583-3032890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):41, 147

               
               
               Conread position:9-489
               
               
               Cow position:chr19:541874-542359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 91

               
               
               Conread position:9-489
               
               
               Cow position:chr19:7472805-7472324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 148

               
               
               Conread position:10-268
               
               
               Cow position:chr19:53737752-53737492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):36, 64

               
               
               Conread position:11-312
               
               
               Cow position:chr19:15766529-15766237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):39, 75

               
               
               Conread position:11-321
               
               
               Cow position:chr19:30565301-30564998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:11-440
               
               
               Cow position:chr19:28575647-28576085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 149

               
               
               Conread position:23-489
               
               
               Cow position:chr19:9098184-9098664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:323
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):27, 98

               
               
               Conread position:24-235
               
               
               Cow position:chr19:35288818-35289024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):26, 45

               
               
               Conread position:32-305
               
               
               Cow position:chr19:29071315-29071577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 21

               
               
               Conread position:46-469
               
               
               Cow position:chr19:27612778-27613219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:49-486
               
               
               Cow position:chr19:32952533-32952093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 108

               
               
               Conread position:50-257
               
               
               Cow position:chr19:33616773-33616567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):36, 112

               
               
               Conread position:50-488
               
               
               Cow position:chr19:34655401-34655855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:307
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):25, 107

               
               
               Conread position:51-489
               
               
               Cow position:chr19:55217514-55217069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 32

               
               
               Conread position:52-485
               
               
               Cow position:chr19:35782690-35783128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 25

               
               
               Conread position:53-466
               
               
               Cow position:chr19:32209083-32208676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):34, 57

               
               
               Conread position:57-487
               
               
               Cow position:chr19:39697178-39696756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 72

               
               
               Conread position:72-489
               
               
               Cow position:chr19:435647-436074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:72-489
               
               
               Cow position:chr19:2269615-2270037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 57

               
               
               Conread position:83-489
               
               
               Cow position:chr19:30473472-30473885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 44

               
               
               Conread position:84-489
               
               
               Cow position:chr19:427102-427515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 27

               
               
               Conread position:84-489
               
               
               Cow position:chr19:20403954-20403548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 69

               
               
               Conread position:99-489
               
               
               Cow position:chr19:39394861-39394465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 63

               
               
               Conread position:100-437
               
               
               Cow position:chr19:14528489-14528148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 53

               
               
               Conread position:104-489
               
               
               Cow position:chr19:4599665-4599280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 49

               
               
               Conread position:104-489
               
               
               Cow position:chr19:28450470-28450089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 49

               
               
               Conread position:108-487
               
               
               Cow position:chr19:743064-743436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 45

               
               
               Conread position:115-480
               
               
               Cow position:chr19:3221747-3221379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 39

               
               
               Conread position:155-460
               
               
               Cow position:chr19:45464740-45464427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):143, 25

               
               
               Conread position:178-405
               
               
               Cow position:chr19:49360125-49360352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):134, 88

               
               
               Conread position:178-482
               
               
               Cow position:chr19:27347480-27347781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):121, 88

               
               
               Conread position:178-489
               
               
               Cow position:chr19:7345607-7345298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):55, 93

               
               
               Conread position:180-322
               
               
               Cow position:chr19:39665548-39665686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:183-353
               
               
               Cow position:chr19:29628107-29628278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):141, 83

               
               
               Conread position:184-489
               
               
               Cow position:chr19:38811936-38811648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):24, 83

               
               
               Conread position:189-489
               
               
               Cow position:chr19:14156531-14156839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):116, 48

               
               
               Conread position:190-448
               
               
               Cow position:chr19:15720311-15720568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):131, 76

               
               
               Conread position:197-489
               
               
               Cow position:chr19:799935-799641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 38

               
               
               Conread position:229-470
               
               
               Cow position:chr19:33648786-33649041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 67

               
               
               Conread position:238-489
               
               
               Cow position:chr19:48478090-48477837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):90, 32

               
               
               Conread position:265-489
               
               
               Cow position:chr19:444448-444671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):45, 23

               
               
               Conread position:314-489
               
               
               Cow position:chr19:33573281-33573453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:331-487
               
               
               Cow position:chr19:35621950-35621795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):55, 39

               
               
               Conread position:333-486
               
               
               Cow position:chr19:1355160-1355004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):57, 143

               
               
               Conread position:1-262
               
               
               Cow position:chr2:48749273-48749533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):45, 141

               
               
               Conread position:1-269
               
               
               Cow position:chr2:42938946-42939214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):85, 47

               
               
               Conread position:1-269
               
               
               Cow position:chr2:82648642-82648912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:206
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):48, 140

               
               
               Conread position:1-281
               
               
               Cow position:chr2:76341218-76341497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-292
               
               
               Cow position:chr2:72789804-72790090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):48, 14

               
               
               Conread position:1-292
               
               
               Cow position:chr2:84866933-84866646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-293
               
               
               Cow position:chr2:33287916-33288200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:1-293
               
               
               Cow position:chr2:57557485-57557776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-295
               
               
               Cow position:chr2:43878060-43877765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 169

               
               
               Conread position:1-309
               
               
               Cow position:chr2:14938879-14938572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-318
               
               
               Cow position:chr2:74210487-74210801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):52, 38

               
               
               Conread position:1-320
               
               
               Cow position:chr2:16308830-16308520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:1-320
               
               
               Cow position:chr2:63274472-63274785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 68

               
               
               Conread position:1-322
               
               
               Cow position:chr2:14806891-14807204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:1-322
               
               
               Cow position:chr2:30959340-30959025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 129

               
               
               Conread position:1-322
               
               
               Cow position:chr2:65452052-65451742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr2:65935001-65935318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr2:70933745-70934059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 160

               
               
               Conread position:1-322
               
               
               Cow position:chr2:85739575-85739250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-326
               
               
               Cow position:chr2:3440744-3440416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:233
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-326
               
               
               Cow position:chr2:14349214-14348886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-347
               
               
               Cow position:chr2:5756555-5756222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):85, 63

               
               
               Conread position:1-355
               
               
               Cow position:chr2:53485636-53485990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 12

               
               
               Conread position:1-356
               
               
               Cow position:chr2:76984709-76985070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 109

               
               
               Conread position:1-367
               
               
               Cow position:chr2:4224189-4224555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-368
               
               
               Cow position:chr2:10640262-10639902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):293, 52

               
               
               Conread position:1-370
               
               
               Cow position:chr2:15963339-15963721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-389
               
               
               Cow position:chr2:56365737-56366136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-396
               
               
               Cow position:chr2:1199640-1200048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 161

               
               
               Conread position:1-409
               
               
               Cow position:chr2:2688585-2688165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-420
               
               
               Cow position:chr2:77281383-77280956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 155

               
               
               Conread position:1-424
               
               
               Cow position:chr2:37008864-37008438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 152

               
               
               Conread position:1-432
               
               
               Cow position:chr2:3786778-3787216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:307
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:1-432
               
               
               Cow position:chr2:4930955-4931397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 165

               
               
               Conread position:1-433
               
               
               Cow position:chr2:52128128-52128570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 154

               
               
               Conread position:1-437
               
               
               Cow position:chr2:6698046-6698469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 83

               
               
               Conread position:1-439
               
               
               Cow position:chr2:31512229-31511788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-477
               
               
               Cow position:chr2:18062192-18062657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 129

               
               
               Conread position:1-481
               
               
               Cow position:chr2:41157381-41156895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 23

               
               
               Conread position:1-482
               
               
               Cow position:chr2:70498431-70498916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-482
               
               
               Cow position:chr2:72543020-72542531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:1-483
               
               
               Cow position:chr2:31456934-31456448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 157

               
               
               Conread position:1-484
               
               
               Cow position:chr2:21169548-21169061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 128

               
               
               Conread position:1-484
               
               
               Cow position:chr2:77468007-77468481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 157

               
               
               Conread position:1-484
               
               
               Cow position:chr2:77859527-77859037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-487
               
               
               Cow position:chr2:29032031-29031572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:330
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):58, 112

               
               
               Conread position:1-487
               
               
               Cow position:chr2:51921361-51921855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 12

               
               
               Conread position:1-489
               
               
               Cow position:chr2:279045-279536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 94

               
               
               Conread position:1-489
               
               
               Cow position:chr2:778245-778742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 158

               
               
               Conread position:1-489
               
               
               Cow position:chr2:982222-981708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 191

               
               
               Conread position:1-489
               
               
               Cow position:chr2:1186647-1187157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr2:2018764-2018273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr2:4804530-4805031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr2:6003614-6004128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 161

               
               
               Conread position:1-489
               
               
               Cow position:chr2:9186693-9187172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 105

               
               
               Conread position:1-489
               
               
               Cow position:chr2:11899598-11899091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr2:12221090-12221584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 13

               
               
               Conread position:1-489
               
               
               Cow position:chr2:12286403-12285911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 110

               
               
               Conread position:1-489
               
               
               Cow position:chr2:13066799-13067297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 161

               
               
               Conread position:1-489
               
               
               Cow position:chr2:13603563-13603070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr2:13726422-13726891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr2:14556531-14557024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr2:15568884-15569378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 128

               
               
               Conread position:1-489
               
               
               Cow position:chr2:16319641-16319145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 8

               
               
               Conread position:1-489
               
               
               Cow position:chr2:20856405-20856886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):323, 16

               
               
               Conread position:1-489
               
               
               Cow position:chr2:21606751-21606249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr2:24875994-24876485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr2:25742063-25742562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 124

               
               
               Conread position:1-489
               
               
               Cow position:chr2:25930202-25930703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr2:28646418-28646918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:1-489
               
               
               Cow position:chr2:29219171-29218673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 152

               
               
               Conread position:1-489
               
               
               Cow position:chr2:30380484-30379983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 164

               
               
               Conread position:1-489
               
               
               Cow position:chr2:31499439-31498941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 136

               
               
               Conread position:1-489
               
               
               Cow position:chr2:32062531-32063020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-489
               
               
               Cow position:chr2:32417427-32417913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 110

               
               
               Conread position:1-489
               
               
               Cow position:chr2:32659639-32659156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 128

               
               
               Conread position:1-489
               
               
               Cow position:chr2:33251409-33251922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 43

               
               
               Conread position:1-489
               
               
               Cow position:chr2:34502940-34502471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:320
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):47, 88

               
               
               Conread position:1-489
               
               
               Cow position:chr2:35949206-35949691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr2:36047115-36047604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 103

               
               
               Conread position:1-489
               
               
               Cow position:chr2:36104690-36104180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 134

               
               
               Conread position:1-489
               
               
               Cow position:chr2:37120638-37120159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 63

               
               
               Conread position:1-489
               
               
               Cow position:chr2:37325093-37324594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr2:41009225-41009718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 112

               
               
               Conread position:1-489
               
               
               Cow position:chr2:41954206-41953722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 13

               
               
               Conread position:1-489
               
               
               Cow position:chr2:42502734-42502236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 130

               
               
               Conread position:1-489
               
               
               Cow position:chr2:42667498-42667998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr2:46182326-46182827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr2:49630532-49630034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr2:50979963-50980447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 130

               
               
               Conread position:1-489
               
               
               Cow position:chr2:53003005-53003496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-489
               
               
               Cow position:chr2:53203916-53204419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 164

               
               
               Conread position:1-489
               
               
               Cow position:chr2:53557373-53556873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 165

               
               
               Conread position:1-489
               
               
               Cow position:chr2:54655158-54655638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 90

               
               
               Conread position:1-489
               
               
               Cow position:chr2:56830609-56831089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 86

               
               
               Conread position:1-489
               
               
               Cow position:chr2:63890037-63890528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 52

               
               
               Conread position:1-489
               
               
               Cow position:chr2:70524965-70524464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr2:72535490-72534991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 150

               
               
               Conread position:1-489
               
               
               Cow position:chr2:72757759-72757255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 145

               
               
               Conread position:1-489
               
               
               Cow position:chr2:72930883-72931377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-489
               
               
               Cow position:chr2:73992923-73992433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr2:79977885-79978373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 156

               
               
               Conread position:1-489
               
               
               Cow position:chr2:84101461-84101962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:2-241
               
               
               Cow position:chr2:9042451-9042691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):53, 124

               
               
               Conread position:2-489
               
               
               Cow position:chr2:46272025-46272513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:340
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):48, 126

               
               
               Conread position:4-299
               
               
               Cow position:chr2:46302487-46302767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 33

               
               
               Conread position:4-320
               
               
               Cow position:chr2:31783390-31783080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 113

               
               
               Conread position:4-377
               
               
               Cow position:chr2:80892865-80893253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-396
               
               
               Cow position:chr2:36435460-36435062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:286
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:4-396
               
               
               Cow position:chr2:36467608-36467210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:289
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:4-446
               
               
               Cow position:chr2:12237818-12238260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 146

               
               
               Conread position:4-484
               
               
               Cow position:chr2:817645-817169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 12

               
               
               Conread position:4-488
               
               
               Cow position:chr2:10972276-10971780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 156

               
               
               Conread position:4-489
               
               
               Cow position:chr2:24928589-24928092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 157

               
               
               Conread position:4-489
               
               
               Cow position:chr2:56306629-56307122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 146

               
               
               Conread position:5-312
               
               
               Cow position:chr2:74763654-74763956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 127

               
               
               Conread position:5-478
               
               
               Cow position:chr2:4017414-4017873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 79

               
               
               Conread position:5-489
               
               
               Cow position:chr2:2590499-2590977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 72

               
               
               Conread position:5-489
               
               
               Cow position:chr2:10183032-10183520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 104

               
               
               Conread position:6-354
               
               
               Cow position:chr2:53850213-53849863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 151

               
               
               Conread position:7-326
               
               
               Cow position:chr2:32455259-32455572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:7-396
               
               
               Cow position:chr2:19294087-19293697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 127

               
               
               Conread position:8-303
               
               
               Cow position:chr2:17426620-17426327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 155

               
               
               Conread position:8-322
               
               
               Cow position:chr2:16334061-16333757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):78, 8

               
               
               Conread position:8-371
               
               
               Cow position:chr2:62225616-62225249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 125

               
               
               Conread position:8-488
               
               
               Cow position:chr2:71467872-71468351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:318
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):42, 12

               
               
               Conread position:8-489
               
               
               Cow position:chr2:27145909-27146400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 107

               
               
               Conread position:8-489
               
               
               Cow position:chr2:34739234-34739713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:326
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):42, 83

               
               
               Conread position:8-489
               
               
               Cow position:chr2:36867353-36867844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 91

               
               
               Conread position:8-489
               
               
               Cow position:chr2:37809329-37809822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:344
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):40, 19

               
               
               Conread position:8-489
               
               
               Cow position:chr2:43525638-43526141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 147

               
               
               Conread position:8-489
               
               
               Cow position:chr2:51480372-51479877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 172

               
               
               Conread position:9-219
               
               
               Cow position:chr2:276153-275945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:175
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):41, 68

               
               
               Conread position:9-293
               
               
               Cow position:chr2:42733208-42732926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):42, 151

               
               
               Conread position:9-389
               
               
               Cow position:chr2:34467458-34467834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 153

               
               
               Conread position:9-405
               
               
               Cow position:chr2:78749978-78749574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 152

               
               
               Conread position:9-467
               
               
               Cow position:chr2:33390584-33390143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 79

               
               
               Conread position:9-484
               
               
               Cow position:chr2:208904-209393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 154

               
               
               Conread position:9-487
               
               
               Cow position:chr2:16071980-16072438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 88

               
               
               Conread position:9-488
               
               
               Cow position:chr2:76985283-76985765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:331
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):41, 127

               
               
               Conread position:9-489
               
               
               Cow position:chr2:4416865-4417351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 18

               
               
               Conread position:9-489
               
               
               Cow position:chr2:9407758-9407270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:327
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):40, 72

               
               
               Conread position:9-489
               
               
               Cow position:chr2:11735945-11735444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 9

               
               
               Conread position:9-489
               
               
               Cow position:chr2:16717709-16718195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 82

               
               
               Conread position:9-489
               
               
               Cow position:chr2:27358262-27357786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 23

               
               
               Conread position:9-489
               
               
               Cow position:chr2:30909693-30909208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 133

               
               
               Conread position:9-489
               
               
               Cow position:chr2:32499442-32499926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 73

               
               
               Conread position:9-489
               
               
               Cow position:chr2:45936545-45937020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 135

               
               
               Conread position:9-489
               
               
               Cow position:chr2:54740668-54740181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 160

               
               
               Conread position:10-322
               
               
               Cow position:chr2:18243205-18242904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):40, 67

               
               
               Conread position:10-322
               
               
               Cow position:chr2:31125221-31124906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 149

               
               
               Conread position:10-481
               
               
               Cow position:chr2:50407291-50406829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 113

               
               
               Conread position:10-489
               
               
               Cow position:chr2:28797050-28796554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 97

               
               
               Conread position:13-326
               
               
               Cow position:chr2:38272980-38272669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 151

               
               
               Conread position:13-489
               
               
               Cow position:chr2:16415315-16414825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:333
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):35, 147

               
               
               Conread position:16-285
               
               
               Cow position:chr2:15812123-15811854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 73

               
               
               Conread position:16-322
               
               
               Cow position:chr2:35463898-35463594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):30, 201

               
               
               Conread position:18-478
               
               
               Cow position:chr2:80839979-80840450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 142

               
               
               Conread position:23-243
               
               
               Cow position:chr2:13579336-13579116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):27, 138

               
               
               Conread position:23-465
               
               
               Cow position:chr2:46939818-46940252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 134

               
               
               Conread position:23-478
               
               
               Cow position:chr2:5998015-5997548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 17

               
               
               Conread position:23-486
               
               
               Cow position:chr2:944195-943740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 139

               
               
               Conread position:23-489
               
               
               Cow position:chr2:78301223-78301687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 63

               
               
               Conread position:24-293
               
               
               Cow position:chr2:65930227-65930490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):25, 135

               
               
               Conread position:25-489
               
               
               Cow position:chr2:9688120-9688593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 135

               
               
               Conread position:25-489
               
               
               Cow position:chr2:62683851-62683373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 130

               
               
               Conread position:26-485
               
               
               Cow position:chr2:36058273-36058730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 66

               
               
               Conread position:35-489
               
               
               Cow position:chr2:12331104-12330638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 131

               
               
               Conread position:46-417
               
               
               Cow position:chr2:9370681-9371053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 67

               
               
               Conread position:46-489
               
               
               Cow position:chr2:26033119-26032675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:299
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):30, 90

               
               
               Conread position:49-489
               
               
               Cow position:chr2:62735325-62734877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 106

               
               
               Conread position:50-355
               
               
               Cow position:chr2:33398301-33398601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):36, 105

               
               
               Conread position:52-453
               
               
               Cow position:chr2:38206870-38207279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 103

               
               
               Conread position:53-322
               
               
               Cow position:chr2:85474610-85474872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):47, 101

               
               
               Conread position:55-286
               
               
               Cow position:chr2:77743008-77742789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 86

               
               
               Conread position:56-288
               
               
               Cow position:chr2:1992453-1992682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):30, 122

               
               
               Conread position:65-489
               
               
               Cow position:chr2:52170537-52170109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 90

               
               
               Conread position:66-489
               
               
               Cow position:chr2:13006449-13006016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 89

               
               
               Conread position:72-447
               
               
               Cow position:chr2:1657426-1657050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:72-489
               
               
               Cow position:chr2:12184890-12184477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 60

               
               
               Conread position:72-489
               
               
               Cow position:chr2:54699654-54699234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:83-243
               
               
               Cow position:chr2:16413037-16412884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:84-322
               
               
               Cow position:chr2:31858086-31858303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:84-460
               
               
               Cow position:chr2:29610883-29610540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:84-487
               
               
               Cow position:chr2:35883350-35883759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 68

               
               
               Conread position:84-489
               
               
               Cow position:chr2:28617289-28617682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:280
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):218, 69

               
               
               Conread position:84-489
               
               
               Cow position:chr2:30924596-30924174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:293
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):116, 69

               
               
               Conread position:84-489
               
               
               Cow position:chr2:54716557-54716145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 69

               
               
               Conread position:84-489
               
               
               Cow position:chr2:68489215-68489620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 59

               
               
               Conread position:84-489
               
               
               Cow position:chr2:72903386-72903793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 193

               
               
               Conread position:85-484
               
               
               Cow position:chr2:82894993-82895401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 63

               
               
               Conread position:88-489
               
               
               Cow position:chr2:41184130-41183727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 13

               
               
               Conread position:94-455
               
               
               Cow position:chr2:14825608-14825250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 59

               
               
               Conread position:99-301
               
               
               Cow position:chr2:28681854-28682048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:107-489
               
               
               Cow position:chr2:75913981-75913595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:262
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):33, 47

               
               
               Conread position:110-322
               
               
               Cow position:chr2:25590161-25590363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:111-489
               
               
               Cow position:chr2:6064405-6064778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:272
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):183, 22

               
               
               Conread position:113-461
               
               
               Cow position:chr2:21407582-21407209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 166

               
               
               Conread position:113-489
               
               
               Cow position:chr2:7370755-7370375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 6

               
               
               Conread position:119-489
               
               
               Cow position:chr2:25024193-25023826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 34

               
               
               Conread position:125-489
               
               
               Cow position:chr2:55481147-55481511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 28

               
               
               Conread position:149-480
               
               
               Cow position:chr2:79966927-79967259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 13

               
               
               Conread position:149-489
               
               
               Cow position:chr2:27075665-27075325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):156, 24

               
               
               Conread position:155-489
               
               
               Cow position:chr2:16324725-16324389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 18

               
               
               Conread position:156-322
               
               
               Cow position:chr2:14883234-14883072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):149, 19

               
               
               Conread position:163-322
               
               
               Cow position:chr2:997960-997805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:182-485
               
               
               Cow position:chr2:63059055-63058752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 92

               
               
               Conread position:182-489
               
               
               Cow position:chr2:193920-194228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 84

               
               
               Conread position:182-489
               
               
               Cow position:chr2:38376177-38375878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):82, 95

               
               
               Conread position:183-486
               
               
               Cow position:chr2:15059959-15060258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 66

               
               
               Conread position:184-411
               
               
               Cow position:chr2:38271330-38271559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):143, 107

               
               
               Conread position:184-487
               
               
               Cow position:chr2:53663538-53663225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 25

               
               
               Conread position:184-489
               
               
               Cow position:chr2:20869879-20870188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):106, 19

               
               
               Conread position:211-460
               
               
               Cow position:chr2:66218293-66218543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):115, 23

               
               
               Conread position:216-489
               
               
               Cow position:chr2:53332798-53332511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):79, 54

               
               
               Conread position:223-484
               
               
               Cow position:chr2:30815747-30816020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 47

               
               
               Conread position:223-489
               
               
               Cow position:chr2:1426662-1426939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):95, 51

               
               
               Conread position:232-489
               
               
               Cow position:chr2:53175302-53175036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 42

               
               
               Conread position:234-433
               
               
               Cow position:chr2:83565996-83566207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):36, 136

               
               
               Conread position:240-489
               
               
               Cow position:chr2:19212804-19213061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):84, 34

               
               
               Conread position:314-489
               
               
               Cow position:chr2:49633641-49633468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 19

               
               
               Conread position:314-489
               
               
               Cow position:chr2:72790693-72790869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:321-484
               
               
               Cow position:chr2:28655471-28655310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):61, 36

               
               
               Conread position:339-481
               
               
               Cow position:chr2:70777253-70777396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:364-488
               
               
               Cow position:chr2:71164685-71164810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:386-489
               
               
               Cow position:chr2:50024918-50024815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-241
               
               
               Cow position:chr20:12241387-12241637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):49, 62

               
               
               Conread position:1-256
               
               
               Cow position:chr20:26826134-26826387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 111

               
               
               Conread position:1-264
               
               
               Cow position:chr20:34776619-34776359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-268
               
               
               Cow position:chr20:27339562-27339301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 157

               
               
               Conread position:1-286
               
               
               Cow position:chr20:38123460-38123167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:211
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):47, 271

               
               
               Conread position:1-294
               
               
               Cow position:chr20:19313836-19314118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:218
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):57, 155

               
               
               Conread position:1-295
               
               
               Cow position:chr20:14472724-14473015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 140

               
               
               Conread position:1-299
               
               
               Cow position:chr20:10759997-10760293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-302
               
               
               Cow position:chr20:40755898-40755595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):45, 74

               
               
               Conread position:1-303
               
               
               Cow position:chr20:12552841-12553131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 8

               
               
               Conread position:1-316
               
               
               Cow position:chr20:40588310-40588001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):49, 90

               
               
               Conread position:1-321
               
               
               Cow position:chr20:18651337-18651020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-322
               
               
               Cow position:chr20:30817023-30816708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):49, 123

               
               
               Conread position:1-322
               
               
               Cow position:chr20:40423606-40423919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 136

               
               
               Conread position:1-324
               
               
               Cow position:chr20:20983516-20983185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 163

               
               
               Conread position:1-326
               
               
               Cow position:chr20:21019053-21018723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 163

               
               
               Conread position:1-341
               
               
               Cow position:chr20:18099688-18099357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 162

               
               
               Conread position:1-368
               
               
               Cow position:chr20:13574835-13575191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:257
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):83, 100

               
               
               Conread position:1-374
               
               
               Cow position:chr20:40058231-40057868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:258
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):49, 94

               
               
               Conread position:1-385
               
               
               Cow position:chr20:19441647-19441258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 162

               
               
               Conread position:1-389
               
               
               Cow position:chr20:34375700-34375293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):49, 66

               
               
               Conread position:1-389
               
               
               Cow position:chr20:35128703-35128291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:293
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):32, 171

               
               
               Conread position:1-441
               
               
               Cow position:chr20:12695037-12694580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-477
               
               
               Cow position:chr20:17668471-17667980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 138

               
               
               Conread position:1-484
               
               
               Cow position:chr20:19155440-19155930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 34

               
               
               Conread position:1-486
               
               
               Cow position:chr20:19845489-19845006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-486
               
               
               Cow position:chr20:29314577-29314084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:344
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):50, 149

               
               
               Conread position:1-487
               
               
               Cow position:chr20:5958417-5958916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-487
               
               
               Cow position:chr20:15117535-15117040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 156

               
               
               Conread position:1-488
               
               
               Cow position:chr20:5538872-5538400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr20:3781973-3782477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr20:6477235-6476746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr20:6550270-6550771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr20:7597134-7597630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr20:7994811-7995316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 166

               
               
               Conread position:1-489
               
               
               Cow position:chr20:9707406-9707903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 26

               
               
               Conread position:1-489
               
               
               Cow position:chr20:10405424-10404923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 161

               
               
               Conread position:1-489
               
               
               Cow position:chr20:12434672-12435172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr20:12826750-12827241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr20:13653617-13654107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 144

               
               
               Conread position:1-489
               
               
               Cow position:chr20:13766610-13766119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr20:17657505-17658004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 117

               
               
               Conread position:1-489
               
               
               Cow position:chr20:18490675-18490176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 30

               
               
               Conread position:1-489
               
               
               Cow position:chr20:20731970-20731485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 21

               
               
               Conread position:1-489
               
               
               Cow position:chr20:23465926-23466423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:1-489
               
               
               Cow position:chr20:26052625-26053126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 155

               
               
               Conread position:1-489
               
               
               Cow position:chr20:28560166-28560658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr20:28725487-28724984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr20:30384518-30385018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 161

               
               
               Conread position:1-489
               
               
               Cow position:chr20:31846093-31846600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 90

               
               
               Conread position:1-489
               
               
               Cow position:chr20:35843699-35844206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 140

               
               
               Conread position:1-489
               
               
               Cow position:chr20:41110700-41111194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 158

               
               
               Conread position:4-289
               
               
               Cow position:chr20:3405493-3405784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 177

               
               
               Conread position:4-479
               
               
               Cow position:chr20:6258570-6259054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 114

               
               
               Conread position:4-489
               
               
               Cow position:chr20:12333393-12332910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:4-489
               
               
               Cow position:chr20:15295742-15295247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 162

               
               
               Conread position:4-489
               
               
               Cow position:chr20:34597631-34598128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 66

               
               
               Conread position:5-481
               
               
               Cow position:chr20:14877782-14877295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 155

               
               
               Conread position:5-489
               
               
               Cow position:chr20:34968724-34968209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 9

               
               
               Conread position:8-354
               
               
               Cow position:chr20:31000912-31000575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):42, 67

               
               
               Conread position:8-437
               
               
               Cow position:chr20:5575981-5575569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:304
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):42, 81

               
               
               Conread position:8-475
               
               
               Cow position:chr20:42254335-42254792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 152

               
               
               Conread position:8-485
               
               
               Cow position:chr20:14512417-14511926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 157

               
               
               Conread position:9-263
               
               
               Cow position:chr20:21925523-21925778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 99

               
               
               Conread position:9-320
               
               
               Cow position:chr20:16941929-16942228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 144

               
               
               Conread position:9-322
               
               
               Cow position:chr20:14585827-14585507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):41, 147

               
               
               Conread position:9-322
               
               
               Cow position:chr20:39375446-39375753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 64

               
               
               Conread position:9-452
               
               
               Cow position:chr20:18321850-18322293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:9-487
               
               
               Cow position:chr20:24399146-24399636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:9-488
               
               
               Cow position:chr20:9536616-9536130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:9-488
               
               
               Cow position:chr20:15240325-15240807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 152

               
               
               Conread position:9-489
               
               
               Cow position:chr20:21398520-21398046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 41

               
               
               Conread position:11-320
               
               
               Cow position:chr20:7225883-7225581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 118

               
               
               Conread position:11-414
               
               
               Cow position:chr20:19146346-19145934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 124

               
               
               Conread position:12-246
               
               
               Cow position:chr20:21371563-21371331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):39, 148

               
               
               Conread position:12-299
               
               
               Cow position:chr20:35691183-35691466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):36, 145

               
               
               Conread position:15-489
               
               
               Cow position:chr20:29806217-29806713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 71

               
               
               Conread position:18-353
               
               
               Cow position:chr20:24439882-24439545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):28, 142

               
               
               Conread position:22-487
               
               
               Cow position:chr20:35112719-35112260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 48

               
               
               Conread position:23-395
               
               
               Cow position:chr20:21767906-21768291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:276
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):25, 133

               
               
               Conread position:23-489
               
               
               Cow position:chr20:6096974-6097437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 127

               
               
               Conread position:23-489
               
               
               Cow position:chr20:19364190-19364658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 102

               
               
               Conread position:24-323
               
               
               Cow position:chr20:10538340-10538047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 135

               
               
               Conread position:24-489
               
               
               Cow position:chr20:13660646-13661118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:326
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):23, 102

               
               
               Conread position:27-489
               
               
               Cow position:chr20:14210675-14211151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 134

               
               
               Conread position:30-412
               
               
               Cow position:chr20:16526997-16526601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):18, 129

               
               
               Conread position:46-300
               
               
               Cow position:chr20:23107082-23106834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):40, 108

               
               
               Conread position:49-462
               
               
               Cow position:chr20:14326941-14327360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 109

               
               
               Conread position:50-287
               
               
               Cow position:chr20:20353474-20353697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):27, 37

               
               
               Conread position:72-322
               
               
               Cow position:chr20:33564068-33563827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):14, 76

               
               
               Conread position:72-396
               
               
               Cow position:chr20:35036728-35037060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:79-305
               
               
               Cow position:chr20:8280847-8281060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:84-376
               
               
               Cow position:chr20:29843929-29843649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):216, 69

               
               
               Conread position:85-487
               
               
               Cow position:chr20:40256286-40255892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 42

               
               
               Conread position:100-489
               
               
               Cow position:chr20:10921304-10921696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 53

               
               
               Conread position:101-305
               
               
               Cow position:chr20:4895741-4895937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:105-489
               
               
               Cow position:chr20:9997153-9996761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 48

               
               
               Conread position:111-317
               
               
               Cow position:chr20:15436814-15436618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:112-489
               
               
               Cow position:chr20:19017793-19018177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 97

               
               
               Conread position:121-489
               
               
               Cow position:chr20:9589375-9589003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 31

               
               
               Conread position:130-489
               
               
               Cow position:chr20:12155779-12156130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 24

               
               
               Conread position:138-489
               
               
               Cow position:chr20:32164518-32164877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 38

               
               
               Conread position:148-484
               
               
               Cow position:chr20:7568389-7568732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:148-484
               
               
               Cow position:chr20:7592875-7593219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:149-354
               
               
               Cow position:chr20:25844756-25844954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:158-489
               
               
               Cow position:chr20:6239580-6239908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 15

               
               
               Conread position:178-489
               
               
               Cow position:chr20:27000046-26999723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 92

               
               
               Conread position:179-489
               
               
               Cow position:chr20:27993975-27994298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):115, 87

               
               
               Conread position:192-487
               
               
               Cow position:chr20:12048016-12047722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):146, 78

               
               
               Conread position:207-489
               
               
               Cow position:chr20:16106970-16106675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:217
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):88, 64

               
               
               Conread position:321-489
               
               
               Cow position:chr20:31078681-31078847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 37

               
               
               Conread position:322-489
               
               
               Cow position:chr20:14741580-14741414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:327-489
               
               
               Cow position:chr20:28282455-28282296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:338-489
               
               
               Cow position:chr20:33181120-33181271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):53, 26

               
               
               Conread position:386-489
               
               
               Cow position:chr20:28034535-28034637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:1-219
               
               
               Cow position:chr21:23606179-23605954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):49, 14

               
               
               Conread position:1-225
               
               
               Cow position:chr21:27146697-27146920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):50, 105

               
               
               Conread position:1-225
               
               
               Cow position:chr21:28734691-28734915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:178
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-228
               
               
               Cow position:chr21:7666548-7666782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-228
               
               
               Cow position:chr21:43240344-43240104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 173

               
               
               Conread position:1-243
               
               
               Cow position:chr21:9711209-9711443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:1-268
               
               
               Cow position:chr21:13315299-13315038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-299
               
               
               Cow position:chr21:24606915-24606624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 88

               
               
               Conread position:1-302
               
               
               Cow position:chr21:10668505-10668788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:1-302
               
               
               Cow position:chr21:12075894-12076193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 14

               
               
               Conread position:1-303
               
               
               Cow position:chr21:27864012-27864319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):49, 105

               
               
               Conread position:1-316
               
               
               Cow position:chr21:33350211-33349900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 161

               
               
               Conread position:1-320
               
               
               Cow position:chr21:28810746-28811065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-322
               
               
               Cow position:chr21:9201695-9201374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-322
               
               
               Cow position:chr21:26829729-26830043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 8

               
               
               Conread position:1-322
               
               
               Cow position:chr21:28028470-28028150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr21:28210694-28210384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 82

               
               
               Conread position:1-322
               
               
               Cow position:chr21:39700597-39700913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 159

               
               
               Conread position:1-347
               
               
               Cow position:chr21:3253466-3253131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 156

               
               
               Conread position:1-357
               
               
               Cow position:chr21:18979347-18979696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):282, 48

               
               
               Conread position:1-365
               
               
               Cow position:chr21:19974262-19973900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:260
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:1-370
               
               
               Cow position:chr21:38900284-38899917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 160

               
               
               Conread position:1-378
               
               
               Cow position:chr21:13111289-13111663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 133

               
               
               Conread position:1-382
               
               
               Cow position:chr21:44761844-44762235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 161

               
               
               Conread position:1-409
               
               
               Cow position:chr21:42558612-42558191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 159

               
               
               Conread position:1-412
               
               
               Cow position:chr21:26628605-26628182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-413
               
               
               Cow position:chr21:28989121-28988705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:1-432
               
               
               Cow position:chr21:48196277-48195847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 90

               
               
               Conread position:1-451
               
               
               Cow position:chr21:44861754-44862216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 178

               
               
               Conread position:1-452
               
               
               Cow position:chr21:9010267-9010734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-475
               
               
               Cow position:chr21:4098398-4097926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 75

               
               
               Conread position:1-480
               
               
               Cow position:chr21:28477133-28476648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-484
               
               
               Cow position:chr21:33728944-33728450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 136

               
               
               Conread position:1-485
               
               
               Cow position:chr21:15545853-15546347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-487
               
               
               Cow position:chr21:43541-43055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 161

               
               
               Conread position:1-487
               
               
               Cow position:chr21:13303033-13302545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-487
               
               
               Cow position:chr21:18285639-18285145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:1-487
               
               
               Cow position:chr21:34254771-34255239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 70

               
               
               Conread position:1-489
               
               
               Cow position:chr21:1196375-1195875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr21:1765698-1766182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr21:2514685-2514188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr21:2878004-2878500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-489
               
               
               Cow position:chr21:2904955-2905452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr21:3782610-3782110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr21:4585838-4586341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 161

               
               
               Conread position:1-489
               
               
               Cow position:chr21:4898135-4898627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr21:5020976-5020483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr21:6765181-6765688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr21:8071261-8071760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 88

               
               
               Conread position:1-489
               
               
               Cow position:chr21:12153650-12153160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 134

               
               
               Conread position:1-489
               
               
               Cow position:chr21:12802275-12802762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 103

               
               
               Conread position:1-489
               
               
               Cow position:chr21:13300652-13300166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 141

               
               
               Conread position:1-489
               
               
               Cow position:chr21:16278235-16277738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 72

               
               
               Conread position:1-489
               
               
               Cow position:chr21:16890006-16890505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr21:18850893-18851372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:1-489
               
               
               Cow position:chr21:21027293-21026811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 117

               
               
               Conread position:1-489
               
               
               Cow position:chr21:21919325-21918828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 86

               
               
               Conread position:1-489
               
               
               Cow position:chr21:24697985-24697510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):322, 13

               
               
               Conread position:1-489
               
               
               Cow position:chr21:25157122-25156637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:1-489
               
               
               Cow position:chr21:26399948-26400427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 63

               
               
               Conread position:1-489
               
               
               Cow position:chr21:27065762-27066262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:1-489
               
               
               Cow position:chr21:30595253-30595753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr21:31252836-31252327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr21:33257392-33256893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 12

               
               
               Conread position:1-489
               
               
               Cow position:chr21:33316528-33317029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr21:33832139-33832642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 69

               
               
               Conread position:1-489
               
               
               Cow position:chr21:33964894-33965382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 111

               
               
               Conread position:1-489
               
               
               Cow position:chr21:36534376-36534871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 52

               
               
               Conread position:1-489
               
               
               Cow position:chr21:38450174-38450644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 114

               
               
               Conread position:1-489
               
               
               Cow position:chr21:47429178-47428680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 157

               
               
               Conread position:1-489
               
               
               Cow position:chr21:48262647-48262153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:2-487
               
               
               Cow position:chr21:20910596-20911086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 156

               
               
               Conread position:4-322
               
               
               Cow position:chr21:743876-744175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 144

               
               
               Conread position:4-322
               
               
               Cow position:chr21:20262831-20263156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-437
               
               
               Cow position:chr21:1058306-1057851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 157

               
               
               Conread position:4-489
               
               
               Cow position:chr21:29423893-29423400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 63

               
               
               Conread position:4-489
               
               
               Cow position:chr21:29500370-29499875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 160

               
               
               Conread position:4-489
               
               
               Cow position:chr21:31512437-31512933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 102

               
               
               Conread position:4-489
               
               
               Cow position:chr21:34684858-34684386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 44

               
               
               Conread position:5-275
               
               
               Cow position:chr21:29214651-29214919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 155

               
               
               Conread position:5-317
               
               
               Cow position:chr21:20588535-20588231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 151

               
               
               Conread position:5-474
               
               
               Cow position:chr21:13704179-13704658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:5-489
               
               
               Cow position:chr21:28915143-28915638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 9

               
               
               Conread position:7-273
               
               
               Cow position:chr21:42542880-42543150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 148

               
               
               Conread position:8-322
               
               
               Cow position:chr21:32814313-32814618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:8-484
               
               
               Cow position:chr21:7156205-7155730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 129

               
               
               Conread position:8-489
               
               
               Cow position:chr21:5596608-5596139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:311
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):316, 56

               
               
               Conread position:8-489
               
               
               Cow position:chr21:45781906-45782388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 27

               
               
               Conread position:9-263
               
               
               Cow position:chr21:16270184-16270431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 118

               
               
               Conread position:9-291
               
               
               Cow position:chr21:29015640-29015917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 151

               
               
               Conread position:9-327
               
               
               Cow position:chr21:5595166-5594851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 151

               
               
               Conread position:9-357
               
               
               Cow position:chr21:8419950-8419603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 114

               
               
               Conread position:9-480
               
               
               Cow position:chr21:36163459-36163943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 119

               
               
               Conread position:9-487
               
               
               Cow position:chr21:2768005-2768504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 154

               
               
               Conread position:9-487
               
               
               Cow position:chr21:30627259-30627740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 77

               
               
               Conread position:9-489
               
               
               Cow position:chr21:4192122-4191632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:330
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):12, 47

               
               
               Conread position:9-489
               
               
               Cow position:chr21:6623650-6623151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 105

               
               
               Conread position:9-489
               
               
               Cow position:chr21:21216637-21217113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 151

               
               
               Conread position:9-489
               
               
               Cow position:chr21:44804753-44805227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 29

               
               
               Conread position:9-489
               
               
               Cow position:chr21:48291528-48292014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 150

               
               
               Conread position:9-489
               
               
               Cow position:chr21:48531001-48530505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:10-273
               
               
               Cow position:chr21:33947577-33947836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 150

               
               
               Conread position:10-328
               
               
               Cow position:chr21:13763056-13762745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):40, 8

               
               
               Conread position:10-489
               
               
               Cow position:chr21:81573-81084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 150

               
               
               Conread position:10-489
               
               
               Cow position:chr21:19965425-19964946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:331
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 7

               
               
               Conread position:11-489
               
               
               Cow position:chr21:17474542-17474055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 6

               
               
               Conread position:13-432
               
               
               Cow position:chr21:48234493-48234921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 96

               
               
               Conread position:23-424
               
               
               Cow position:chr21:16768307-16768711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 137

               
               
               Conread position:23-489
               
               
               Cow position:chr21:33983457-33983938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 137

               
               
               Conread position:24-322
               
               
               Cow position:chr21:8890711-8890401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):26, 257

               
               
               Conread position:24-451
               
               
               Cow position:chr21:18786700-18787134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 18

               
               
               Conread position:46-353
               
               
               Cow position:chr21:21411816-21412116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):40, 84

               
               
               Conread position:49-302
               
               
               Cow position:chr21:16532909-16532658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):36, 66

               
               
               Conread position:49-342
               
               
               Cow position:chr21:26241024-26240750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):261, 32

               
               
               Conread position:49-488
               
               
               Cow position:chr21:49655400-49655845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 58

               
               
               Conread position:49-489
               
               
               Cow position:chr21:27342627-27343061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 106

               
               
               Conread position:49-489
               
               
               Cow position:chr21:42460289-42460720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 106

               
               
               Conread position:51-489
               
               
               Cow position:chr21:20243820-20244263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:54-489
               
               
               Cow position:chr21:33307748-33307303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:306
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):32, 101

               
               
               Conread position:55-484
               
               
               Cow position:chr21:46973966-46974388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 40

               
               
               Conread position:65-489
               
               
               Cow position:chr21:4722413-4721994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:287
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:65-489
               
               
               Cow position:chr21:23548496-23548922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 5

               
               
               Conread position:72-421
               
               
               Cow position:chr21:2928113-2928469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 83

               
               
               Conread position:72-487
               
               
               Cow position:chr21:13749921-13749499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):14, 86

               
               
               Conread position:72-489
               
               
               Cow position:chr21:17721340-17720920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:293
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):14, 86

               
               
               Conread position:72-489
               
               
               Cow position:chr21:23500913-23501338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 63

               
               
               Conread position:84-259
               
               
               Cow position:chr21:3629049-3629216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:84-489
               
               
               Cow position:chr21:31276085-31275681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 9

               
               
               Conread position:85-489
               
               
               Cow position:chr21:22316262-22315868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:290
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):240, 14

               
               
               Conread position:99-489
               
               
               Cow position:chr21:17144421-17144025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 54

               
               
               Conread position:105-489
               
               
               Cow position:chr21:47360447-47360832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 43

               
               
               Conread position:107-489
               
               
               Cow position:chr21:47532458-47532070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 46

               
               
               Conread position:112-320
               
               
               Cow position:chr21:28442171-28441965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):72, 41

               
               
               Conread position:118-484
               
               
               Cow position:chr21:39400958-39400577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 159

               
               
               Conread position:118-489
               
               
               Cow position:chr21:26698965-26699328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 36

               
               
               Conread position:119-365
               
               
               Cow position:chr21:18829169-18829405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):64, 32

               
               
               Conread position:122-489
               
               
               Cow position:chr21:4739347-4738976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:251
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):75, 31

               
               
               Conread position:139-489
               
               
               Cow position:chr21:18824002-18824333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:245
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):202, 14

               
               
               Conread position:154-489
               
               
               Cow position:chr21:9896038-9895699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 26

               
               
               Conread position:155-489
               
               
               Cow position:chr21:4189222-4188874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 20

               
               
               Conread position:160-484
               
               
               Cow position:chr21:27263356-27263033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):120, 15

               
               
               Conread position:165-489
               
               
               Cow position:chr21:34657661-34657331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 15

               
               
               Conread position:178-489
               
               
               Cow position:chr21:28881329-28881009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):145, 93

               
               
               Conread position:185-489
               
               
               Cow position:chr21:18791781-18792102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):104, 65

               
               
               Conread position:212-484
               
               
               Cow position:chr21:32573608-32573321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:218
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):85, 58

               
               
               Conread position:237-489
               
               
               Cow position:chr21:33420374-33420631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):90, 33

               
               
               Conread position:314-489
               
               
               Cow position:chr21:3804269-3804443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):69, 44

               
               
               Conread position:1-220
               
               
               Cow position:chr22:12968591-12968814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):48, 114

               
               
               Conread position:1-226
               
               
               Cow position:chr22:21355710-21355931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):49, 92

               
               
               Conread position:1-243
               
               
               Cow position:chr22:6286067-6286309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 159

               
               
               Conread position:1-252
               
               
               Cow position:chr22:11922395-11922636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):49, 14

               
               
               Conread position:1-259
               
               
               Cow position:chr22:7436054-7435800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-277
               
               
               Cow position:chr22:5930667-5930937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 145

               
               
               Conread position:1-293
               
               
               Cow position:chr22:556668-556953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:1-293
               
               
               Cow position:chr22:34894211-34893923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 88

               
               
               Conread position:1-294
               
               
               Cow position:chr22:22160158-22159889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:217
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:1-294
               
               
               Cow position:chr22:26658441-26658139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-298
               
               
               Cow position:chr22:19656196-19656488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:1-301
               
               
               Cow position:chr22:5331129-5331416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 48

               
               
               Conread position:1-321
               
               
               Cow position:chr22:26019036-26019352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr22:1325875-1325556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 13

               
               
               Conread position:1-323
               
               
               Cow position:chr22:34750033-34749735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):48, 106

               
               
               Conread position:1-326
               
               
               Cow position:chr22:5623979-5624300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 158

               
               
               Conread position:1-338
               
               
               Cow position:chr22:5338157-5338493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):46, 28

               
               
               Conread position:1-353
               
               
               Cow position:chr22:6493541-6493182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-357
               
               
               Cow position:chr22:14092305-14092661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:260
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):48, 162

               
               
               Conread position:1-370
               
               
               Cow position:chr22:46528147-46527764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:264
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-373
               
               
               Cow position:chr22:27321541-27321165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 12

               
               
               Conread position:1-376
               
               
               Cow position:chr22:31593601-31593989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:277
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):47, 14

               
               
               Conread position:1-379
               
               
               Cow position:chr22:27385891-27386281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-421
               
               
               Cow position:chr22:29553509-29553951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 169

               
               
               Conread position:1-437
               
               
               Cow position:chr22:1521810-1522258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 122

               
               
               Conread position:1-445
               
               
               Cow position:chr22:31645758-31645320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:1-447
               
               
               Cow position:chr22:15356656-15356217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:299
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):139, 63

               
               
               Conread position:1-467
               
               
               Cow position:chr22:6924697-6924229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 159

               
               
               Conread position:1-474
               
               
               Cow position:chr22:34605834-34605363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 160

               
               
               Conread position:1-480
               
               
               Cow position:chr22:8773342-8773833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 157

               
               
               Conread position:1-484
               
               
               Cow position:chr22:17324838-17325333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 158

               
               
               Conread position:1-485
               
               
               Cow position:chr22:1036528-1036047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:1-485
               
               
               Cow position:chr22:5315886-5315408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 64

               
               
               Conread position:1-485
               
               
               Cow position:chr22:44462962-44462466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 14

               
               
               Conread position:1-486
               
               
               Cow position:chr22:45845555-45845066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 149

               
               
               Conread position:1-487
               
               
               Cow position:chr22:14816976-14817474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-488
               
               
               Cow position:chr22:13768932-13768470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 109

               
               
               Conread position:1-488
               
               
               Cow position:chr22:37323933-37323434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 164

               
               
               Conread position:1-488
               
               
               Cow position:chr22:37535662-37536166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr22:2560810-2561306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 161

               
               
               Conread position:1-489
               
               
               Cow position:chr22:3433298-3433799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr22:5929243-5929712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr22:6340311-6339818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:1-489
               
               
               Cow position:chr22:8881796-8881310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 37

               
               
               Conread position:1-489
               
               
               Cow position:chr22:11697980-11698444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 158

               
               
               Conread position:1-489
               
               
               Cow position:chr22:11837760-11838255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 13

               
               
               Conread position:1-489
               
               
               Cow position:chr22:11988054-11988542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 144

               
               
               Conread position:1-489
               
               
               Cow position:chr22:12624889-12625393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 98

               
               
               Conread position:1-489
               
               
               Cow position:chr22:14509861-14510353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 150

               
               
               Conread position:1-489
               
               
               Cow position:chr22:15308297-15308799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr22:18807576-18808068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 48

               
               
               Conread position:1-489
               
               
               Cow position:chr22:18811256-18811749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 48

               
               
               Conread position:1-489
               
               
               Cow position:chr22:19140043-19140541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 69

               
               
               Conread position:1-489
               
               
               Cow position:chr22:22107707-22107207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr22:26167135-26167624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr22:28785776-28785283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr22:29397745-29397248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr22:29464551-29464055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-489
               
               
               Cow position:chr22:30514696-30514207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 92

               
               
               Conread position:1-489
               
               
               Cow position:chr22:31316204-31315707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 126

               
               
               Conread position:1-489
               
               
               Cow position:chr22:32018902-32019395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 126

               
               
               Conread position:1-489
               
               
               Cow position:chr22:32210277-32209775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr22:33094002-33093511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 161

               
               
               Conread position:1-489
               
               
               Cow position:chr22:33448641-33449121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 134

               
               
               Conread position:1-489
               
               
               Cow position:chr22:33901634-33902139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:1-489
               
               
               Cow position:chr22:33951296-33951788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr22:34172115-34171614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr22:35934304-35934804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr22:39464875-39465377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr22:41845907-41846401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 88

               
               
               Conread position:1-489
               
               
               Cow position:chr22:41927917-41928387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:347
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:1-489
               
               
               Cow position:chr22:42499702-42500202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:4-247
               
               
               Cow position:chr22:2070406-2070163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):48, 87

               
               
               Conread position:4-278
               
               
               Cow position:chr22:5041774-5041489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:215
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):46, 158

               
               
               Conread position:4-427
               
               
               Cow position:chr22:35755031-35755466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 149

               
               
               Conread position:4-475
               
               
               Cow position:chr22:32951899-32951418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 136

               
               
               Conread position:4-488
               
               
               Cow position:chr22:3270169-3270662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-489
               
               
               Cow position:chr22:6498080-6498537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 152

               
               
               Conread position:4-489
               
               
               Cow position:chr22:9269861-9269362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 156

               
               
               Conread position:4-489
               
               
               Cow position:chr22:18188839-18188382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 59

               
               
               Conread position:4-489
               
               
               Cow position:chr22:18233532-18233038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 132

               
               
               Conread position:4-489
               
               
               Cow position:chr22:34608132-34607653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 134

               
               
               Conread position:4-489
               
               
               Cow position:chr22:35909823-35910324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 126

               
               
               Conread position:4-489
               
               
               Cow position:chr22:36503049-36503537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 153

               
               
               Conread position:5-442
               
               
               Cow position:chr22:22048540-22048989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 145

               
               
               Conread position:5-453
               
               
               Cow position:chr22:13017347-13017800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 109

               
               
               Conread position:5-467
               
               
               Cow position:chr22:42234427-42233969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:324
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):42, 151

               
               
               Conread position:5-489
               
               
               Cow position:chr22:23864469-23863978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 155

               
               
               Conread position:5-489
               
               
               Cow position:chr22:31331211-31331708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 155

               
               
               Conread position:5-489
               
               
               Cow position:chr22:46578049-46578540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 86

               
               
               Conread position:6-393
               
               
               Cow position:chr22:645295-645664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:6-489
               
               
               Cow position:chr22:11753994-11754478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 153

               
               
               Conread position:6-489
               
               
               Cow position:chr22:39472937-39473454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 183

               
               
               Conread position:7-489
               
               
               Cow position:chr22:21593082-21592587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 153

               
               
               Conread position:8-302
               
               
               Cow position:chr22:33798361-33798641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):40, 84

               
               
               Conread position:8-347
               
               
               Cow position:chr22:1484297-1483964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 78

               
               
               Conread position:8-355
               
               
               Cow position:chr22:11746455-11746814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 86

               
               
               Conread position:8-487
               
               
               Cow position:chr22:30918725-30918256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 113

               
               
               Conread position:8-489
               
               
               Cow position:chr22:2415545-2415062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 128

               
               
               Conread position:8-489
               
               
               Cow position:chr22:13210030-13209546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 71

               
               
               Conread position:8-489
               
               
               Cow position:chr22:44924686-44925162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 20

               
               
               Conread position:8-489
               
               
               Cow position:chr22:46439669-46440153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 19

               
               
               Conread position:9-308
               
               
               Cow position:chr22:46525211-46524917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):40, 138

               
               
               Conread position:9-322
               
               
               Cow position:chr22:8481094-8480772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 114

               
               
               Conread position:9-322
               
               
               Cow position:chr22:8505339-8505017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 114

               
               
               Conread position:9-396
               
               
               Cow position:chr22:1591688-1591292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:286
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:9-484
               
               
               Cow position:chr22:43261518-43261034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 70

               
               
               Conread position:9-488
               
               
               Cow position:chr22:1310285-1310776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 109

               
               
               Conread position:9-489
               
               
               Cow position:chr22:12728010-12728497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 66

               
               
               Conread position:9-489
               
               
               Cow position:chr22:13776162-13775663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 58

               
               
               Conread position:9-489
               
               
               Cow position:chr22:41271548-41272038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 157

               
               
               Conread position:10-489
               
               
               Cow position:chr22:10361579-10361089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:10-489
               
               
               Cow position:chr22:15953353-15953836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 128

               
               
               Conread position:10-489
               
               
               Cow position:chr22:32221091-32220624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 32

               
               
               Conread position:10-489
               
               
               Cow position:chr22:33200928-33200445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 151

               
               
               Conread position:10-489
               
               
               Cow position:chr22:40374037-40373555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 78

               
               
               Conread position:10-489
               
               
               Cow position:chr22:41407816-41408308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:338
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):40, 154

               
               
               Conread position:10-489
               
               
               Cow position:chr22:48271368-48271851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 17

               
               
               Conread position:11-322
               
               
               Cow position:chr22:36594557-36594859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 147

               
               
               Conread position:12-489
               
               
               Cow position:chr22:26759616-26759129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 149

               
               
               Conread position:13-489
               
               
               Cow position:chr22:32894560-32894072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 150

               
               
               Conread position:14-288
               
               
               Cow position:chr22:32488082-32488356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 145

               
               
               Conread position:16-489
               
               
               Cow position:chr22:8340058-8339581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 144

               
               
               Conread position:16-489
               
               
               Cow position:chr22:15497639-15497170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 117

               
               
               Conread position:16-489
               
               
               Cow position:chr22:25968026-25968496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 6

               
               
               Conread position:18-489
               
               
               Cow position:chr22:11767192-11767641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 148

               
               
               Conread position:22-489
               
               
               Cow position:chr22:1517397-1517878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 138

               
               
               Conread position:23-299
               
               
               Cow position:chr22:27510715-27510440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 137

               
               
               Conread position:23-489
               
               
               Cow position:chr22:13696286-13696757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 134

               
               
               Conread position:24-489
               
               
               Cow position:chr22:30092430-30091967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 115

               
               
               Conread position:27-488
               
               
               Cow position:chr22:47957637-47958094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 58

               
               
               Conread position:49-247
               
               
               Cow position:chr22:13186890-13186702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 106

               
               
               Conread position:49-489
               
               
               Cow position:chr22:36571926-36572371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 108

               
               
               Conread position:51-436
               
               
               Cow position:chr22:34901474-34901084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 105

               
               
               Conread position:54-299
               
               
               Cow position:chr22:2912735-2912984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):6, 34

               
               
               Conread position:54-450
               
               
               Cow position:chr22:2531490-2531892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 101

               
               
               Conread position:54-489
               
               
               Cow position:chr22:40590010-40589555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 33

               
               
               Conread position:56-489
               
               
               Cow position:chr22:41971950-41972374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 99

               
               
               Conread position:59-489
               
               
               Cow position:chr22:39443425-39443841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 25

               
               
               Conread position:60-489
               
               
               Cow position:chr22:19048180-19048607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 95

               
               
               Conread position:64-489
               
               
               Cow position:chr22:26243955-26243539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:299
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):22, 91

               
               
               Conread position:66-489
               
               
               Cow position:chr22:45583199-45582794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):19, 89

               
               
               Conread position:69-489
               
               
               Cow position:chr22:46033809-46033390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:299
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):17, 46

               
               
               Conread position:72-478
               
               
               Cow position:chr22:18122190-18122603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:79-489
               
               
               Cow position:chr22:25942809-25942413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:280
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):225, 5

               
               
               Conread position:80-326
               
               
               Cow position:chr22:20324597-20324833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:81-307
               
               
               Cow position:chr22:32189639-32189855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:81-489
               
               
               Cow position:chr22:11662915-11663286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:291
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):117, 7

               
               
               Conread position:82-489
               
               
               Cow position:chr22:24817188-24817597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 71

               
               
               Conread position:83-305
               
               
               Cow position:chr22:30189882-30189677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:83-489
               
               
               Cow position:chr22:7280119-7279709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 70

               
               
               Conread position:84-414
               
               
               Cow position:chr22:14699545-14699856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):301, 61

               
               
               Conread position:84-489
               
               
               Cow position:chr22:14822089-14822495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:291
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):183, 43

               
               
               Conread position:85-403
               
               
               Cow position:chr22:47927223-47926903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):238, 68

               
               
               Conread position:101-489
               
               
               Cow position:chr22:28178520-28178113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 89

               
               
               Conread position:105-322
               
               
               Cow position:chr22:33113689-33113481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):7, 30

               
               
               Conread position:107-489
               
               
               Cow position:chr22:25340699-25340317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 46

               
               
               Conread position:107-489
               
               
               Cow position:chr22:29955651-29956027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):13, 47

               
               
               Conread position:113-327
               
               
               Cow position:chr22:3303089-3303288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:114-489
               
               
               Cow position:chr22:3065258-3065635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 39

               
               
               Conread position:116-413
               
               
               Cow position:chr22:37032336-37032635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):133, 37

               
               
               Conread position:116-489
               
               
               Cow position:chr22:533634-533265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 32

               
               
               Conread position:155-322
               
               
               Cow position:chr22:23077526-23077686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:155-475
               
               
               Cow position:chr22:4292149-4291842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):198, 17

               
               
               Conread position:157-467
               
               
               Cow position:chr22:1080391-1080079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):171, 34

               
               
               Conread position:158-489
               
               
               Cow position:chr22:10576984-10577324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 17

               
               
               Conread position:162-407
               
               
               Cow position:chr22:29633108-29633367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):24, 105

               
               
               Conread position:178-433
               
               
               Cow position:chr22:5836034-5835770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):147, 88

               
               
               Conread position:179-489
               
               
               Cow position:chr22:27223353-27223673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 190

               
               
               Conread position:180-376
               
               
               Cow position:chr22:36540882-36541088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):53, 41

               
               
               Conread position:181-382
               
               
               Cow position:chr22:36564776-36564978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):111, 50

               
               
               Conread position:182-489
               
               
               Cow position:chr22:43789211-43788892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):123, 84

               
               
               Conread position:184-487
               
               
               Cow position:chr22:28130235-28129919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):144, 82

               
               
               Conread position:185-489
               
               
               Cow position:chr22:6722089-6722408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):122, 81

               
               
               Conread position:185-489
               
               
               Cow position:chr22:40386114-40385803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 81

               
               
               Conread position:196-489
               
               
               Cow position:chr22:9371827-9371522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 70

               
               
               Conread position:196-489
               
               
               Cow position:chr22:32660745-32660446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):123, 70

               
               
               Conread position:224-489
               
               
               Cow position:chr22:288192-288468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:250-477
               
               
               Cow position:chr22:33387360-33387591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):36, 20

               
               
               Conread position:285-489
               
               
               Cow position:chr22:6202101-6202302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):30, 59

               
               
               Conread position:314-489
               
               
               Cow position:chr22:46022258-46022085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:321-489
               
               
               Cow position:chr22:8504794-8504627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):63, 36

               
               
               Conread position:321-489
               
               
               Cow position:chr22:18195028-18194862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:321-489
               
               
               Cow position:chr22:36858214-36858372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-243
               
               
               Cow position:chr23:1941595-1941335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):49, 161

               
               
               Conread position:1-244
               
               
               Cow position:chr23:10554565-10554811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 160

               
               
               Conread position:1-250
               
               
               Cow position:chr23:36748286-36748519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):85, 43

               
               
               Conread position:1-293
               
               
               Cow position:chr23:2721375-2721089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 85

               
               
               Conread position:1-302
               
               
               Cow position:chr23:24504555-24504249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):45, 157

               
               
               Conread position:1-305
               
               
               Cow position:chr23:26840829-26840524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 125

               
               
               Conread position:1-317
               
               
               Cow position:chr23:361984-362297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-317
               
               
               Cow position:chr23:23470387-23470066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):49, 128

               
               
               Conread position:1-317
               
               
               Cow position:chr23:26066565-26066261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):49, 94

               
               
               Conread position:1-318
               
               
               Cow position:chr23:10013993-10013678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr23:14738555-14738239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:1-326
               
               
               Cow position:chr23:39812678-39812359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:1-379
               
               
               Cow position:chr23:39389704-39389337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):78, 63

               
               
               Conread position:1-463
               
               
               Cow position:chr23:24098784-24098311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 108

               
               
               Conread position:1-483
               
               
               Cow position:chr23:1321741-1322231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 156

               
               
               Conread position:1-488
               
               
               Cow position:chr23:11128669-11128177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 114

               
               
               Conread position:1-488
               
               
               Cow position:chr23:37198853-37199355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 105

               
               
               Conread position:1-489
               
               
               Cow position:chr23:344811-345298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr23:1337832-1338331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 126

               
               
               Conread position:1-489
               
               
               Cow position:chr23:2023431-2023927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:1-489
               
               
               Cow position:chr23:3286415-3285916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:1-489
               
               
               Cow position:chr23:4636693-4637198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr23:5623922-5624415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 134

               
               
               Conread position:1-489
               
               
               Cow position:chr23:6223475-6223007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 156

               
               
               Conread position:1-489
               
               
               Cow position:chr23:7360109-7359618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:1-489
               
               
               Cow position:chr23:8708049-8707548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr23:11344151-11343654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 161

               
               
               Conread position:1-489
               
               
               Cow position:chr23:11376660-11377160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 99

               
               
               Conread position:1-489
               
               
               Cow position:chr23:11782444-11781942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr23:15180614-15180116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 149

               
               
               Conread position:1-489
               
               
               Cow position:chr23:26828901-26828410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 12

               
               
               Conread position:1-489
               
               
               Cow position:chr23:28915986-28915490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr23:30633933-30634437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 165

               
               
               Conread position:1-489
               
               
               Cow position:chr23:31833349-31833842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 21

               
               
               Conread position:1-489
               
               
               Cow position:chr23:40890432-40889934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:4-489
               
               
               Cow position:chr23:19493508-19493006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 162

               
               
               Conread position:4-489
               
               
               Cow position:chr23:28306500-28305999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 157

               
               
               Conread position:4-489
               
               
               Cow position:chr23:30244134-30243659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 83

               
               
               Conread position:4-489
               
               
               Cow position:chr23:30622845-30623340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 161

               
               
               Conread position:5-389
               
               
               Cow position:chr23:11405033-11405425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 70

               
               
               Conread position:5-487
               
               
               Cow position:chr23:6173366-6173859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 130

               
               
               Conread position:5-488
               
               
               Cow position:chr23:15529239-15528745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 106

               
               
               Conread position:5-489
               
               
               Cow position:chr23:11078933-11078435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 155

               
               
               Conread position:8-322
               
               
               Cow position:chr23:10495650-10495970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):42, 119

               
               
               Conread position:8-322
               
               
               Cow position:chr23:31897075-31896771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):42, 110

               
               
               Conread position:8-489
               
               
               Cow position:chr23:25357993-25357503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 27

               
               
               Conread position:9-322
               
               
               Cow position:chr23:26230775-26230470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 127

               
               
               Conread position:9-361
               
               
               Cow position:chr23:2033042-2032693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:9-445
               
               
               Cow position:chr23:40825432-40825002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 41

               
               
               Conread position:9-474
               
               
               Cow position:chr23:35324592-35325056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 33

               
               
               Conread position:9-486
               
               
               Cow position:chr23:20025584-20025094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 152

               
               
               Conread position:9-487
               
               
               Cow position:chr23:1310925-1311412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 129

               
               
               Conread position:9-487
               
               
               Cow position:chr23:2180212-2180687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 89

               
               
               Conread position:9-488
               
               
               Cow position:chr23:25554241-25553750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 86

               
               
               Conread position:9-489
               
               
               Cow position:chr23:2408564-2409054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 152

               
               
               Conread position:9-489
               
               
               Cow position:chr23:22170557-22170065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:10-257
               
               
               Cow position:chr23:26305819-26305571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):21, 151

               
               
               Conread position:46-489
               
               
               Cow position:chr23:38027353-38027790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:309
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):40, 83

               
               
               Conread position:49-489
               
               
               Cow position:chr23:3877544-3877985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 106

               
               
               Conread position:51-488
               
               
               Cow position:chr23:40539078-40539519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):35, 104

               
               
               Conread position:51-489
               
               
               Cow position:chr23:2761501-2761056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 104

               
               
               Conread position:53-489
               
               
               Cow position:chr23:14839595-14840012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):285, 29

               
               
               Conread position:54-314
               
               
               Cow position:chr23:2269777-2270032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):29, 102

               
               
               Conread position:64-305
               
               
               Cow position:chr23:9540605-9540844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):23, 92

               
               
               Conread position:67-304
               
               
               Cow position:chr23:5539551-5539779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:72-414
               
               
               Cow position:chr23:20541552-20541208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:249
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):14, 46

               
               
               Conread position:72-489
               
               
               Cow position:chr23:14959378-14959794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 54

               
               
               Conread position:97-489
               
               
               Cow position:chr23:416476-416085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 56

               
               
               Conread position:108-489
               
               
               Cow position:chr23:21277093-21277476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 45

               
               
               Conread position:113-265
               
               
               Cow position:chr23:11208539-11208390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):80, 6

               
               
               Conread position:119-489
               
               
               Cow position:chr23:29625508-29625131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):189, 32

               
               
               Conread position:183-489
               
               
               Cow position:chr23:32007918-32008219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):145, 27

               
               
               Conread position:187-489
               
               
               Cow position:chr23:29459782-29460094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):151, 21

               
               
               Conread position:188-488
               
               
               Cow position:chr23:20170735-20171043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 53

               
               
               Conread position:200-486
               
               
               Cow position:chr23:1325856-1326152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 70

               
               
               Conread position:210-489
               
               
               Cow position:chr23:20389572-20389864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):128, 60

               
               
               Conread position:232-489
               
               
               Cow position:chr23:3887358-3887099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:314-489
               
               
               Cow position:chr23:1048541-1048716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:320-489
               
               
               Cow position:chr23:2737547-2737379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:1-226
               
               
               Cow position:chr24:31770229-31770000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):49, 161

               
               
               Conread position:1-247
               
               
               Cow position:chr24:24250144-24249898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-252
               
               
               Cow position:chr24:2731122-2731386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):47, 133

               
               
               Conread position:1-256
               
               
               Cow position:chr24:13304749-13305002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:1-273
               
               
               Cow position:chr24:11839605-11839334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-293
               
               
               Cow position:chr24:18374213-18373902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:1-321
               
               
               Cow position:chr24:7030732-7031056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:234
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):47, 7

               
               
               Conread position:1-322
               
               
               Cow position:chr24:6340454-6340136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):15, 114

               
               
               Conread position:1-322
               
               
               Cow position:chr24:6542150-6542481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:1-322
               
               
               Cow position:chr24:17752501-17752813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 130

               
               
               Conread position:1-322
               
               
               Cow position:chr24:25110996-25110681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 89

               
               
               Conread position:1-322
               
               
               Cow position:chr24:25424428-25424122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 25

               
               
               Conread position:1-356
               
               
               Cow position:chr24:39160121-39160460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):49, 108

               
               
               Conread position:1-365
               
               
               Cow position:chr24:15674870-15675256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 113

               
               
               Conread position:1-406
               
               
               Cow position:chr24:29064222-29064636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 26

               
               
               Conread position:1-467
               
               
               Cow position:chr24:36710575-36710114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 49

               
               
               Conread position:1-474
               
               
               Cow position:chr24:45009935-45009452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-484
               
               
               Cow position:chr24:16267194-16266712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 150

               
               
               Conread position:1-484
               
               
               Cow position:chr24:17412166-17411664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 85

               
               
               Conread position:1-484
               
               
               Cow position:chr24:25991732-25992186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:324
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):269, 63

               
               
               Conread position:1-486
               
               
               Cow position:chr24:17309678-17310181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 155

               
               
               Conread position:1-487
               
               
               Cow position:chr24:10243811-10244296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 159

               
               
               Conread position:1-487
               
               
               Cow position:chr24:18266742-18267234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 159

               
               
               Conread position:1-487
               
               
               Cow position:chr24:26846852-26847351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-488
               
               
               Cow position:chr24:32740178-32740658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-488
               
               
               Cow position:chr24:45087275-45086774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr24:6035429-6035931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr24:6271862-6271390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr24:12090726-12090230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 116

               
               
               Conread position:1-489
               
               
               Cow position:chr24:12331956-12332457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr24:13497051-13496534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr24:14336601-14336117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:338
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):48, 94

               
               
               Conread position:1-489
               
               
               Cow position:chr24:14375911-14376393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 8

               
               
               Conread position:1-489
               
               
               Cow position:chr24:14760650-14760142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr24:16080734-16081237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr24:16909065-16908554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 161

               
               
               Conread position:1-489
               
               
               Cow position:chr24:17105131-17105627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 99

               
               
               Conread position:1-489
               
               
               Cow position:chr24:17566596-17566101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr24:18113206-18112705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr24:20283461-20283960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr24:26412797-26412301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr24:27148842-27148355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 13

               
               
               Conread position:1-489
               
               
               Cow position:chr24:29180100-29179616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 19

               
               
               Conread position:1-489
               
               
               Cow position:chr24:32823383-32823872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 86

               
               
               Conread position:1-489
               
               
               Cow position:chr24:32853960-32853462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 156

               
               
               Conread position:1-489
               
               
               Cow position:chr24:35067044-35067527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr24:40036203-40036704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 74

               
               
               Conread position:1-489
               
               
               Cow position:chr24:40149646-40150138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 86

               
               
               Conread position:1-489
               
               
               Cow position:chr24:41006223-41005728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 162

               
               
               Conread position:4-355
               
               
               Cow position:chr24:19466513-19466866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 110

               
               
               Conread position:4-469
               
               
               Cow position:chr24:30870221-30870697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-483
               
               
               Cow position:chr24:17365238-17365717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:4-489
               
               
               Cow position:chr24:9071099-9071591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 102

               
               
               Conread position:4-489
               
               
               Cow position:chr24:29191031-29190538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-489
               
               
               Cow position:chr24:40466665-40467163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 157

               
               
               Conread position:5-487
               
               
               Cow position:chr24:15372534-15372032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:346
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):45, 11

               
               
               Conread position:5-489
               
               
               Cow position:chr24:18222747-18223230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 48

               
               
               Conread position:6-489
               
               
               Cow position:chr24:43634849-43634366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 21

               
               
               Conread position:7-489
               
               
               Cow position:chr24:11462269-11462761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 84

               
               
               Conread position:8-392
               
               
               Cow position:chr24:32759376-32759762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 152

               
               
               Conread position:8-488
               
               
               Cow position:chr24:21998699-21999178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:318
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):42, 12

               
               
               Conread position:8-489
               
               
               Cow position:chr24:16056124-16056608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 129

               
               
               Conread position:9-227
               
               
               Cow position:chr24:11886570-11886355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):36, 122

               
               
               Conread position:9-234
               
               
               Cow position:chr24:39441379-39441599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 146

               
               
               Conread position:9-266
               
               
               Cow position:chr24:31323680-31323426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):41, 145

               
               
               Conread position:9-312
               
               
               Cow position:chr24:30768128-30767831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):40, 143

               
               
               Conread position:9-487
               
               
               Cow position:chr24:38814385-38813899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 147

               
               
               Conread position:9-489
               
               
               Cow position:chr24:6415905-6415413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 151

               
               
               Conread position:9-489
               
               
               Cow position:chr24:12202774-12203260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 122

               
               
               Conread position:9-489
               
               
               Cow position:chr24:32361121-32361595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 124

               
               
               Conread position:10-322
               
               
               Cow position:chr24:40896496-40896807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):60, 128

               
               
               Conread position:10-453
               
               
               Cow position:chr24:42943939-42944369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:317
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):36, 25

               
               
               Conread position:10-489
               
               
               Cow position:chr24:13373764-13374264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 113

               
               
               Conread position:16-486
               
               
               Cow position:chr24:15667022-15667493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:23-268
               
               
               Cow position:chr24:11006380-11006138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):16, 146

               
               
               Conread position:23-489
               
               
               Cow position:chr24:35823477-35823955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 75

               
               
               Conread position:26-484
               
               
               Cow position:chr24:39956384-39956846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 134

               
               
               Conread position:42-393
               
               
               Cow position:chr24:25677410-25677058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):44, 78

               
               
               Conread position:48-211
               
               
               Cow position:chr24:27766477-27766639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):36, 107

               
               
               Conread position:49-328
               
               
               Cow position:chr24:4721153-4721423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:49-489
               
               
               Cow position:chr24:28497436-28497882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 148

               
               
               Conread position:55-353
               
               
               Cow position:chr24:21094580-21094870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):17, 101

               
               
               Conread position:56-489
               
               
               Cow position:chr24:17368242-17368675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 43

               
               
               Conread position:72-489
               
               
               Cow position:chr24:16558615-16559029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 43

               
               
               Conread position:72-489
               
               
               Cow position:chr24:33937603-33937179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 84

               
               
               Conread position:84-489
               
               
               Cow position:chr24:16474963-16474556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:286
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):110, 21

               
               
               Conread position:85-299
               
               
               Cow position:chr24:42581887-42582104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):76, 171

               
               
               Conread position:103-412
               
               
               Cow position:chr24:39258481-39258176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):190, 46

               
               
               Conread position:144-487
               
               
               Cow position:chr24:6524601-6524249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 33

               
               
               Conread position:181-487
               
               
               Cow position:chr24:36726723-36726408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):122, 49

               
               
               Conread position:183-489
               
               
               Cow position:chr24:9088551-9088857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):139, 82

               
               
               Conread position:184-489
               
               
               Cow position:chr24:31381955-31381649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 86

               
               
               Conread position:187-489
               
               
               Cow position:chr24:7959951-7960266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):36, 46

               
               
               Conread position:189-489
               
               
               Cow position:chr24:8431930-8431622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 76

               
               
               Conread position:196-473
               
               
               Cow position:chr24:14609321-14609599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):132, 70

               
               
               Conread position:207-488
               
               
               Cow position:chr24:36721989-36721695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 6

               
               
               Conread position:223-489
               
               
               Cow position:chr24:38002513-38002787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):76, 29

               
               
               Conread position:246-489
               
               
               Cow position:chr24:36404825-36404573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):7, 29

               
               
               Conread position:313-489
               
               
               Cow position:chr24:6544002-6543835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:323-489
               
               
               Cow position:chr24:5653295-5653461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):67, 36

               
               
               Conread position:325-489
               
               
               Cow position:chr24:27724630-27724793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:327-489
               
               
               Cow position:chr24:29131019-29131179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):60, 31

               
               
               Conread position:342-467
               
               
               Cow position:chr24:19467181-19467307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:1-238
               
               
               Cow position:chr25:11662336-11662574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):52, 66

               
               
               Conread position:1-239
               
               
               Cow position:chr25:24213591-24213829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):52, 105

               
               
               Conread position:1-258
               
               
               Cow position:chr25:24669920-24670173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 155

               
               
               Conread position:1-307
               
               
               Cow position:chr25:9595761-9595459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 133

               
               
               Conread position:1-320
               
               
               Cow position:chr25:16308744-16309074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 158

               
               
               Conread position:1-322
               
               
               Cow position:chr25:13332861-13332546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):52, 138

               
               
               Conread position:1-322
               
               
               Cow position:chr25:21950575-21950255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 158

               
               
               Conread position:1-368
               
               
               Cow position:chr25:20790474-20790860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:276
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:1-379
               
               
               Cow position:chr25:14954599-14954973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 45

               
               
               Conread position:1-409
               
               
               Cow position:chr25:34013311-34013726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 109

               
               
               Conread position:1-432
               
               
               Cow position:chr25:9055107-9054674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-450
               
               
               Cow position:chr25:4522371-4522825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 155

               
               
               Conread position:1-450
               
               
               Cow position:chr25:24204685-24205144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 59

               
               
               Conread position:1-460
               
               
               Cow position:chr25:20495978-20495532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 52

               
               
               Conread position:1-474
               
               
               Cow position:chr25:20075921-20075442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 160

               
               
               Conread position:1-484
               
               
               Cow position:chr25:17992699-17993189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-485
               
               
               Cow position:chr25:17994850-17995341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 163

               
               
               Conread position:1-487
               
               
               Cow position:chr25:11666110-11665625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-487
               
               
               Cow position:chr25:40321842-40322341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 13

               
               
               Conread position:1-489
               
               
               Cow position:chr25:8655737-8655237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 113

               
               
               Conread position:1-489
               
               
               Cow position:chr25:12755990-12756477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:1-489
               
               
               Cow position:chr25:13960507-13960014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr25:16922348-16922842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 132

               
               
               Conread position:1-489
               
               
               Cow position:chr25:17562512-17561995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 290

               
               
               Conread position:1-489
               
               
               Cow position:chr25:17585568-17586073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 168

               
               
               Conread position:1-489
               
               
               Cow position:chr25:17658060-17657568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr25:18129641-18129176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 13

               
               
               Conread position:1-489
               
               
               Cow position:chr25:18269905-18269420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 88

               
               
               Conread position:1-489
               
               
               Cow position:chr25:20771889-20772379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr25:23739799-23740298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:1-489
               
               
               Cow position:chr25:24302819-24303318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 158

               
               
               Conread position:1-489
               
               
               Cow position:chr25:24654727-24655222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 103

               
               
               Conread position:1-489
               
               
               Cow position:chr25:25480191-25480651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):327, 52

               
               
               Conread position:1-489
               
               
               Cow position:chr25:25510337-25509820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr25:25826901-25826395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr25:27231795-27231306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-489
               
               
               Cow position:chr25:33838821-33838330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr25:34343462-34343959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 113

               
               
               Conread position:1-489
               
               
               Cow position:chr25:35554116-35553617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr25:35567442-35567936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 158

               
               
               Conread position:1-489
               
               
               Cow position:chr25:35754799-35755296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 157

               
               
               Conread position:1-489
               
               
               Cow position:chr25:37593851-37593349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr25:39386387-39386882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 156

               
               
               Conread position:1-489
               
               
               Cow position:chr25:41121450-41120956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr25:41356355-41356850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:2-299
               
               
               Cow position:chr25:5570897-5570607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):84, 49

               
               
               Conread position:3-489
               
               
               Cow position:chr25:17553824-17554311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 116

               
               
               Conread position:4-285
               
               
               Cow position:chr25:22760335-22760058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):47, 24

               
               
               Conread position:4-322
               
               
               Cow position:chr25:41366716-41367017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):82, 11

               
               
               Conread position:4-340
               
               
               Cow position:chr25:34768124-34767787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 80

               
               
               Conread position:4-489
               
               
               Cow position:chr25:7800456-7799971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 151

               
               
               Conread position:4-489
               
               
               Cow position:chr25:10137269-10136771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 167

               
               
               Conread position:4-489
               
               
               Cow position:chr25:26353343-26353837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 83

               
               
               Conread position:5-355
               
               
               Cow position:chr25:18323915-18324269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 122

               
               
               Conread position:8-453
               
               
               Cow position:chr25:37967402-37966945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:309
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):38, 19

               
               
               Conread position:9-326
               
               
               Cow position:chr25:8080306-8079989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):41, 132

               
               
               Conread position:9-489
               
               
               Cow position:chr25:26896485-26895999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 131

               
               
               Conread position:9-489
               
               
               Cow position:chr25:41097758-41098244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 151

               
               
               Conread position:10-489
               
               
               Cow position:chr25:2516440-2515955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 85

               
               
               Conread position:10-489
               
               
               Cow position:chr25:10012620-10013114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 149

               
               
               Conread position:11-322
               
               
               Cow position:chr25:30525937-30526243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):6, 113

               
               
               Conread position:12-483
               
               
               Cow position:chr25:18265627-18265150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 106

               
               
               Conread position:18-489
               
               
               Cow position:chr25:33687778-33688271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 140

               
               
               Conread position:24-489
               
               
               Cow position:chr25:28275246-28275719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 110

               
               
               Conread position:45-489
               
               
               Cow position:chr25:4372315-4372743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 110

               
               
               Conread position:46-298
               
               
               Cow position:chr25:40141106-40141354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):21, 26

               
               
               Conread position:49-322
               
               
               Cow position:chr25:16401496-16401762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 107

               
               
               Conread position:51-489
               
               
               Cow position:chr25:37648808-37648378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:55-489
               
               
               Cow position:chr25:12833992-12834407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:302
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:55-489
               
               
               Cow position:chr25:22151494-22151052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 100

               
               
               Conread position:58-413
               
               
               Cow position:chr25:22576437-22576785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:263
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):27, 101

               
               
               Conread position:69-489
               
               
               Cow position:chr25:2595141-2594719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 86

               
               
               Conread position:84-488
               
               
               Cow position:chr25:12938849-12939259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 75

               
               
               Conread position:84-489
               
               
               Cow position:chr25:23914024-23913619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 9

               
               
               Conread position:87-299
               
               
               Cow position:chr25:24776707-24776507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):150, 66

               
               
               Conread position:112-467
               
               
               Cow position:chr25:23366997-23366636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:267
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):192, 41

               
               
               Conread position:155-489
               
               
               Cow position:chr25:24459432-24459749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):237, 19

               
               
               Conread position:159-489
               
               
               Cow position:chr25:34502936-34503275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 16

               
               
               Conread position:162-489
               
               
               Cow position:chr25:33574448-33574780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 107

               
               
               Conread position:180-466
               
               
               Cow position:chr25:34237362-34237649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):117, 86

               
               
               Conread position:201-489
               
               
               Cow position:chr25:23998942-23999236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):102, 50

               
               
               Conread position:209-489
               
               
               Cow position:chr25:2497975-2497690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):129, 85

               
               
               Conread position:212-489
               
               
               Cow position:chr25:449569-449843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 59

               
               
               Conread position:214-489
               
               
               Cow position:chr25:18452532-18452249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):107, 34

               
               
               Conread position:255-489
               
               
               Cow position:chr25:21968368-21968127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):72, 16

               
               
               Conread position:314-489
               
               
               Cow position:chr25:30340236-30340413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):69, 56

               
               
               Conread position:321-485
               
               
               Cow position:chr25:10633895-10634055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:1-242
               
               
               Cow position:chr26:1341081-1340833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):14, 184

               
               
               Conread position:1-256
               
               
               Cow position:chr26:32671036-32671298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:1-275
               
               
               Cow position:chr26:30569426-30569700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 8

               
               
               Conread position:1-292
               
               
               Cow position:chr26:15938081-15937794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-292
               
               
               Cow position:chr26:18918615-18918907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):49, 167

               
               
               Conread position:1-307
               
               
               Cow position:chr26:8746576-8746875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 34

               
               
               Conread position:1-322
               
               
               Cow position:chr26:13556512-13556824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr26:14395774-14396094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 166

               
               
               Conread position:1-322
               
               
               Cow position:chr26:14897792-14897474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 165

               
               
               Conread position:1-322
               
               
               Cow position:chr26:21539097-21538779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-325
               
               
               Cow position:chr26:23600331-23600646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-356
               
               
               Cow position:chr26:12965174-12965518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 63

               
               
               Conread position:1-366
               
               
               Cow position:chr26:3185307-3184947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:261
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:1-394
               
               
               Cow position:chr26:2610369-2610761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:276
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):52, 133

               
               
               Conread position:1-433
               
               
               Cow position:chr26:30725205-30725659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-467
               
               
               Cow position:chr26:25393489-25393013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 174

               
               
               Conread position:1-484
               
               
               Cow position:chr26:4324015-4324506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 161

               
               
               Conread position:1-488
               
               
               Cow position:chr26:7459263-7459760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 86

               
               
               Conread position:1-489
               
               
               Cow position:chr26:798842-799326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 133

               
               
               Conread position:1-489
               
               
               Cow position:chr26:1621351-1620858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr26:6037976-6038479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 278

               
               
               Conread position:1-489
               
               
               Cow position:chr26:6843518-6844017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr26:9558166-9558677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr26:10698810-10699293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 136

               
               
               Conread position:1-489
               
               
               Cow position:chr26:13806325-13806824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr26:17327867-17327365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 154

               
               
               Conread position:1-489
               
               
               Cow position:chr26:17428762-17429272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 168

               
               
               Conread position:1-489
               
               
               Cow position:chr26:22692089-22691593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 155

               
               
               Conread position:1-489
               
               
               Cow position:chr26:23591399-23590898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr26:35424201-35423702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:4-304
               
               
               Cow position:chr26:14292337-14292032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 158

               
               
               Conread position:4-481
               
               
               Cow position:chr26:11370388-11369908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:4-487
               
               
               Cow position:chr26:21859283-21858807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 46

               
               
               Conread position:5-407
               
               
               Cow position:chr26:6475975-6476392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 156

               
               
               Conread position:6-270
               
               
               Cow position:chr26:15561511-15561767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):43, 105

               
               
               Conread position:8-299
               
               
               Cow position:chr26:27137555-27137848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 23

               
               
               Conread position:8-303
               
               
               Cow position:chr26:10966320-10966606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:227
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):78, 40

               
               
               Conread position:8-317
               
               
               Cow position:chr26:2770445-2770756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):42, 104

               
               
               Conread position:8-320
               
               
               Cow position:chr26:4748472-4748774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):42, 148

               
               
               Conread position:8-489
               
               
               Cow position:chr26:26238697-26238205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 154

               
               
               Conread position:8-489
               
               
               Cow position:chr26:33949679-33950167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:330
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):38, 152

               
               
               Conread position:9-430
               
               
               Cow position:chr26:3706258-3705844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:9-489
               
               
               Cow position:chr26:3755694-3755224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:329
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):117, 60

               
               
               Conread position:9-489
               
               
               Cow position:chr26:8810551-8810079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 152

               
               
               Conread position:9-489
               
               
               Cow position:chr26:12662053-12662528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 152

               
               
               Conread position:9-489
               
               
               Cow position:chr26:13773739-13773256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 117

               
               
               Conread position:10-302
               
               
               Cow position:chr26:17538643-17538355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):40, 96

               
               
               Conread position:10-339
               
               
               Cow position:chr26:1613848-1614184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):39, 246

               
               
               Conread position:11-322
               
               
               Cow position:chr26:6097876-6098178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 147

               
               
               Conread position:11-483
               
               
               Cow position:chr26:19791716-19792177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:317
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):37, 124

               
               
               Conread position:49-322
               
               
               Cow position:chr26:16720128-16719860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 108

               
               
               Conread position:49-467
               
               
               Cow position:chr26:18877456-18877032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 105

               
               
               Conread position:49-489
               
               
               Cow position:chr26:17288460-17288013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 68

               
               
               Conread position:66-489
               
               
               Cow position:chr26:11269846-11269432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 89

               
               
               Conread position:72-343
               
               
               Cow position:chr26:11902970-11902711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:72-487
               
               
               Cow position:chr26:9836099-9835673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:72-489
               
               
               Cow position:chr26:1885645-1885215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 82

               
               
               Conread position:72-489
               
               
               Cow position:chr26:3556502-3556895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:297
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):14, 29

               
               
               Conread position:103-486
               
               
               Cow position:chr26:2604331-2604718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:273
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):190, 49

               
               
               Conread position:105-487
               
               
               Cow position:chr26:10490829-10490449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 16

               
               
               Conread position:180-322
               
               
               Cow position:chr26:6837146-6837007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:180-489
               
               
               Cow position:chr26:17182586-17182286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):115, 86

               
               
               Conread position:182-473
               
               
               Cow position:chr26:3923960-3924260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 39

               
               
               Conread position:188-489
               
               
               Cow position:chr26:19795569-19795256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 20

               
               
               Conread position:198-489
               
               
               Cow position:chr26:3700466-3700174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):96, 72

               
               
               Conread position:216-489
               
               
               Cow position:chr26:46161-46447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):14, 59

               
               
               Conread position:246-487
               
               
               Cow position:chr26:18800705-18800954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 24

               
               
               Conread position:259-486
               
               
               Cow position:chr26:20186758-20186528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):46, 103

               
               
               Conread position:276-489
               
               
               Cow position:chr26:10011535-10011325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):107, 34

               
               
               Conread position:324-488
               
               
               Cow position:chr26:756245-756406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):66, 35

               
               
               Conread position:1-238
               
               
               Cow position:chr27:5853405-5853169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):49, 68

               
               
               Conread position:1-262
               
               
               Cow position:chr27:12147551-12147290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-292
               
               
               Cow position:chr27:3235390-3235097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):20, 134

               
               
               Conread position:1-306
               
               
               Cow position:chr27:9989222-9989524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-320
               
               
               Cow position:chr27:10324276-10324583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 8

               
               
               Conread position:1-322
               
               
               Cow position:chr27:13409655-13409336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 8

               
               
               Conread position:1-354
               
               
               Cow position:chr27:27742867-27742528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):86, 52

               
               
               Conread position:1-409
               
               
               Cow position:chr27:9090288-9089883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 44

               
               
               Conread position:1-412
               
               
               Cow position:chr27:16331830-16332243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 150

               
               
               Conread position:1-449
               
               
               Cow position:chr27:24055342-24054906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 118

               
               
               Conread position:1-450
               
               
               Cow position:chr27:4664987-4665422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 161

               
               
               Conread position:1-463
               
               
               Cow position:chr27:10306761-10306302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:1-466
               
               
               Cow position:chr27:25112825-25112344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-479
               
               
               Cow position:chr27:30783574-30783073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 277

               
               
               Conread position:1-486
               
               
               Cow position:chr27:9262619-9263116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-487
               
               
               Cow position:chr27:15272418-15272908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 156

               
               
               Conread position:1-489
               
               
               Cow position:chr27:344272-344765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 14

               
               
               Conread position:1-489
               
               
               Cow position:chr27:2332159-2331661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:1-489
               
               
               Cow position:chr27:3653041-3653542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr27:5914596-5914091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 267

               
               
               Conread position:1-489
               
               
               Cow position:chr27:8201595-8201096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr27:8973104-8972602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:1-489
               
               
               Cow position:chr27:9333326-9332836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr27:10384089-10383606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr27:11481590-11481089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr27:13901782-13901282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr27:14297864-14297365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:1-489
               
               
               Cow position:chr27:15349294-15348820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 107

               
               
               Conread position:1-489
               
               
               Cow position:chr27:15871673-15872161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr27:19423717-19424219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 63

               
               
               Conread position:1-489
               
               
               Cow position:chr27:19931899-19932408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 8

               
               
               Conread position:1-489
               
               
               Cow position:chr27:20811075-20810579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr27:22330150-22329665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr27:24295601-24296111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr27:25800552-25801047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr27:26330586-26330090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 154

               
               
               Conread position:1-489
               
               
               Cow position:chr27:26785470-26784980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:1-489
               
               
               Cow position:chr27:27292052-27291547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 165

               
               
               Conread position:4-365
               
               
               Cow position:chr27:28984422-28984051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 157

               
               
               Conread position:4-489
               
               
               Cow position:chr27:8291501-8291001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:4-489
               
               
               Cow position:chr27:19523054-19523550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:5-489
               
               
               Cow position:chr27:11256032-11256507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 63

               
               
               Conread position:6-428
               
               
               Cow position:chr27:30677435-30677860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 150

               
               
               Conread position:7-489
               
               
               Cow position:chr27:1081524-1082004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 57

               
               
               Conread position:8-320
               
               
               Cow position:chr27:20866011-20865700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:8-489
               
               
               Cow position:chr27:21283600-21284076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 143

               
               
               Conread position:9-320
               
               
               Cow position:chr27:6620714-6621004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:9-484
               
               
               Cow position:chr27:25885450-25884988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 151

               
               
               Conread position:9-487
               
               
               Cow position:chr27:26856691-26856218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:9-489
               
               
               Cow position:chr27:30036529-30036027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 153

               
               
               Conread position:11-481
               
               
               Cow position:chr27:25676778-25677244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:310
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 72

               
               
               Conread position:14-488
               
               
               Cow position:chr27:14669848-14669356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 113

               
               
               Conread position:16-484
               
               
               Cow position:chr27:15866657-15867132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 154

               
               
               Conread position:21-484
               
               
               Cow position:chr27:1141334-1140861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 134

               
               
               Conread position:38-489
               
               
               Cow position:chr27:17565035-17565476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 11

               
               
               Conread position:49-295
               
               
               Cow position:chr27:18943496-18943253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 105

               
               
               Conread position:49-483
               
               
               Cow position:chr27:18954648-18954207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:299
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):37, 106

               
               
               Conread position:51-489
               
               
               Cow position:chr27:27930805-27930366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 65

               
               
               Conread position:52-489
               
               
               Cow position:chr27:5983428-5983872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 71

               
               
               Conread position:53-489
               
               
               Cow position:chr27:21392627-21392170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 72

               
               
               Conread position:56-247
               
               
               Cow position:chr27:8569173-8568980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):9, 100

               
               
               Conread position:59-485
               
               
               Cow position:chr27:13317151-13316725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 96

               
               
               Conread position:62-243
               
               
               Cow position:chr27:7084675-7084851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):24, 93

               
               
               Conread position:63-489
               
               
               Cow position:chr27:2682114-2681681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 92

               
               
               Conread position:74-437
               
               
               Cow position:chr27:12239648-12239278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 81

               
               
               Conread position:84-293
               
               
               Cow position:chr27:13844144-13844345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:84-489
               
               
               Cow position:chr27:3990232-3990642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 68

               
               
               Conread position:155-489
               
               
               Cow position:chr27:1536671-1536328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 20

               
               
               Conread position:179-488
               
               
               Cow position:chr27:14380784-14380463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 91

               
               
               Conread position:192-484
               
               
               Cow position:chr27:27045644-27045340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):17, 80

               
               
               Conread position:196-475
               
               
               Cow position:chr27:16787834-16788124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):104, 78

               
               
               Conread position:233-489
               
               
               Cow position:chr27:15697770-15697508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):67, 37

               
               
               Conread position:251-479
               
               
               Cow position:chr27:25971191-25971433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:314-477
               
               
               Cow position:chr27:9989869-9990033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):60, 43

               
               
               Conread position:320-489
               
               
               Cow position:chr27:8262096-8261929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):68, 20

               
               
               Conread position:321-489
               
               
               Cow position:chr27:8429329-8429161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):63, 43

               
               
               Conread position:1-255
               
               
               Cow position:chr28:22279734-22279985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-285
               
               
               Cow position:chr28:26727961-26728243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-287
               
               
               Cow position:chr28:25767679-25767395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 128

               
               
               Conread position:1-305
               
               
               Cow position:chr28:15272806-15273107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-308
               
               
               Cow position:chr28:30532292-30532595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 81

               
               
               Conread position:1-319
               
               
               Cow position:chr28:13357261-13357569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 105

               
               
               Conread position:1-321
               
               
               Cow position:chr28:11787257-11787567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 156

               
               
               Conread position:1-322
               
               
               Cow position:chr28:9419899-9420212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):46, 153

               
               
               Conread position:1-322
               
               
               Cow position:chr28:12156384-12156066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr28:13865251-13864937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:1-322
               
               
               Cow position:chr28:23773651-23773971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):16, 93

               
               
               Conread position:1-322
               
               
               Cow position:chr28:30303737-30304064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):48, 81

               
               
               Conread position:1-326
               
               
               Cow position:chr28:24671725-24671405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:1-326
               
               
               Cow position:chr28:29199179-29198860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 14

               
               
               Conread position:1-327
               
               
               Cow position:chr28:22501029-22501332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:244
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):52, 157

               
               
               Conread position:1-365
               
               
               Cow position:chr28:24603630-24603269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:1-413
               
               
               Cow position:chr28:7981252-7981679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 165

               
               
               Conread position:1-452
               
               
               Cow position:chr28:25762492-25762075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:323
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):78, 63

               
               
               Conread position:1-464
               
               
               Cow position:chr28:12650923-12650448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 162

               
               
               Conread position:1-465
               
               
               Cow position:chr28:5768653-5768179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 134

               
               
               Conread position:1-473
               
               
               Cow position:chr28:19300725-19300275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 88

               
               
               Conread position:1-484
               
               
               Cow position:chr28:10280534-10280061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:342
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):41, 119

               
               
               Conread position:1-484
               
               
               Cow position:chr28:18140027-18140503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:343
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):49, 14

               
               
               Conread position:1-485
               
               
               Cow position:chr28:30098581-30098086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr28:1383747-1384251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr28:2222660-2223162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 13

               
               
               Conread position:1-489
               
               
               Cow position:chr28:3001161-3001652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 122

               
               
               Conread position:1-489
               
               
               Cow position:chr28:3745654-3745167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 97

               
               
               Conread position:1-489
               
               
               Cow position:chr28:4214596-4214096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr28:5111019-5111517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr28:5748001-5748502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr28:5773115-5772622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 103

               
               
               Conread position:1-489
               
               
               Cow position:chr28:5804968-5804473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr28:5941192-5940690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr28:6047496-6047000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 158

               
               
               Conread position:1-489
               
               
               Cow position:chr28:6959936-6959433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 163

               
               
               Conread position:1-489
               
               
               Cow position:chr28:7005733-7005231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr28:10772781-10772287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 113

               
               
               Conread position:1-489
               
               
               Cow position:chr28:13372836-13373334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr28:15032414-15032874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:321
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):78, 62

               
               
               Conread position:1-489
               
               
               Cow position:chr28:16597852-16597354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr28:17030382-17030891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 169

               
               
               Conread position:1-489
               
               
               Cow position:chr28:20934694-20935208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr28:20966964-20967465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr28:21363221-21362716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 157

               
               
               Conread position:1-489
               
               
               Cow position:chr28:22254488-22254994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 168

               
               
               Conread position:1-489
               
               
               Cow position:chr28:23615858-23615347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 123

               
               
               Conread position:1-489
               
               
               Cow position:chr28:23793871-23794364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr28:26419296-26419797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr28:28357080-28357580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 152

               
               
               Conread position:1-489
               
               
               Cow position:chr28:29035946-29036448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr28:29435101-29435597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:1-489
               
               
               Cow position:chr28:32589404-32588903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr28:33256014-33255525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 47

               
               
               Conread position:1-489
               
               
               Cow position:chr28:33640274-33639774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr28:34597945-34597448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 154

               
               
               Conread position:2-474
               
               
               Cow position:chr28:20310639-20310154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:328
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):44, 20

               
               
               Conread position:4-228
               
               
               Cow position:chr28:17315097-17314873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 156

               
               
               Conread position:4-319
               
               
               Cow position:chr28:13889293-13889605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-322
               
               
               Cow position:chr28:25248821-25248506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:4-322
               
               
               Cow position:chr28:34850850-34850541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 12

               
               
               Conread position:4-408
               
               
               Cow position:chr28:615683-615289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 156

               
               
               Conread position:4-450
               
               
               Cow position:chr28:26718628-26718195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:301
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):40, 157

               
               
               Conread position:4-489
               
               
               Cow position:chr28:786360-785871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 121

               
               
               Conread position:4-489
               
               
               Cow position:chr28:13463665-13463167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-489
               
               
               Cow position:chr28:24487693-24488181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 129

               
               
               Conread position:5-322
               
               
               Cow position:chr28:25726827-25726513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 9

               
               
               Conread position:5-483
               
               
               Cow position:chr28:23868932-23868448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 39

               
               
               Conread position:5-486
               
               
               Cow position:chr28:6473566-6474045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:5-489
               
               
               Cow position:chr28:30870772-30870276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 156

               
               
               Conread position:6-356
               
               
               Cow position:chr28:20964170-20964538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:266
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):56, 159

               
               
               Conread position:8-302
               
               
               Cow position:chr28:13881241-13880943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 151

               
               
               Conread position:8-308
               
               
               Cow position:chr28:11356489-11356792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 152

               
               
               Conread position:8-322
               
               
               Cow position:chr28:13693168-13692866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:8-474
               
               
               Cow position:chr28:2417485-2417014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:8-484
               
               
               Cow position:chr28:11501530-11502013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 150

               
               
               Conread position:8-489
               
               
               Cow position:chr28:21381895-21381405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:328
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):43, 151

               
               
               Conread position:8-489
               
               
               Cow position:chr28:25826416-25826914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:8-489
               
               
               Cow position:chr28:30961229-30960751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 74

               
               
               Conread position:9-487
               
               
               Cow position:chr28:14150684-14150194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 124

               
               
               Conread position:9-487
               
               
               Cow position:chr28:29806748-29807233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 125

               
               
               Conread position:9-489
               
               
               Cow position:chr28:4957805-4958300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:9-489
               
               
               Cow position:chr28:7685236-7685732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:9-489
               
               
               Cow position:chr28:10473650-10473171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 116

               
               
               Conread position:9-489
               
               
               Cow position:chr28:17663252-17663745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:9-489
               
               
               Cow position:chr28:23544320-23543830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 151

               
               
               Conread position:10-431
               
               
               Cow position:chr28:12081232-12081659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:10-489
               
               
               Cow position:chr28:8717262-8717749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 150

               
               
               Conread position:10-489
               
               
               Cow position:chr28:25847694-25847215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 149

               
               
               Conread position:17-238
               
               
               Cow position:chr28:19023652-19023880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):33, 62

               
               
               Conread position:20-487
               
               
               Cow position:chr28:10295476-10295012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 142

               
               
               Conread position:24-322
               
               
               Cow position:chr28:24645141-24644847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 135

               
               
               Conread position:24-364
               
               
               Cow position:chr28:25804553-25804215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 136

               
               
               Conread position:24-489
               
               
               Cow position:chr28:5211803-5211326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 136

               
               
               Conread position:24-489
               
               
               Cow position:chr28:13523361-13522889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 136

               
               
               Conread position:28-489
               
               
               Cow position:chr28:13607102-13606636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 13

               
               
               Conread position:46-488
               
               
               Cow position:chr28:34677559-34677991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 58

               
               
               Conread position:49-264
               
               
               Cow position:chr28:19565678-19565889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):37, 106

               
               
               Conread position:49-305
               
               
               Cow position:chr28:10530073-10530323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):37, 79

               
               
               Conread position:56-487
               
               
               Cow position:chr28:23467554-23467123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:293
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):32, 67

               
               
               Conread position:64-463
               
               
               Cow position:chr28:3188380-3188786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 97

               
               
               Conread position:66-489
               
               
               Cow position:chr28:10162854-10162434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 89

               
               
               Conread position:72-377
               
               
               Cow position:chr28:4069575-4069271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:72-475
               
               
               Cow position:chr28:10578467-10578880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 66

               
               
               Conread position:72-484
               
               
               Cow position:chr28:7744733-7744306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 85

               
               
               Conread position:83-489
               
               
               Cow position:chr28:10642928-10643319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):308, 70

               
               
               Conread position:84-465
               
               
               Cow position:chr28:3653211-3652839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:273
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):244, 50

               
               
               Conread position:85-489
               
               
               Cow position:chr28:32785826-32786223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 19

               
               
               Conread position:86-489
               
               
               Cow position:chr28:6060688-6061077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 67

               
               
               Conread position:99-489
               
               
               Cow position:chr28:21104379-21104765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 54

               
               
               Conread position:108-374
               
               
               Cow position:chr28:15497900-15498153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):188, 35

               
               
               Conread position:111-322
               
               
               Cow position:chr28:5367771-5367972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:179-489
               
               
               Cow position:chr28:7784696-7785024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):95, 190

               
               
               Conread position:181-486
               
               
               Cow position:chr28:12998202-12997884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):119, 90

               
               
               Conread position:184-489
               
               
               Cow position:chr28:4457852-4457534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):109, 64

               
               
               Conread position:190-489
               
               
               Cow position:chr28:24564308-24564619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):102, 84

               
               
               Conread position:197-489
               
               
               Cow position:chr28:21767795-21768089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 73

               
               
               Conread position:200-468
               
               
               Cow position:chr28:15715477-15715197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 66

               
               
               Conread position:207-489
               
               
               Cow position:chr28:5770518-5770239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):146, 64

               
               
               Conread position:314-461
               
               
               Cow position:chr28:34200665-34200814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 45

               
               
               Conread position:314-489
               
               
               Cow position:chr28:3004139-3004315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):76, 43

               
               
               Conread position:314-489
               
               
               Cow position:chr28:4929071-4929246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:320-489
               
               
               Cow position:chr28:23025747-23025578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):6, 13

               
               
               Conread position:322-489
               
               
               Cow position:chr28:331529-331696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):64, 34

               
               
               Conread position:322-489
               
               
               Cow position:chr28:22229961-22230128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):64, 35

               
               
               Conread position:322-489
               
               
               Cow position:chr28:30533688-30533853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):64, 35

               
               
               Conread position:1-227
               
               
               Cow position:chr29:8934732-8934509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:186
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):48, 136

               
               
               Conread position:1-241
               
               
               Cow position:chr29:19946504-19946749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):49, 62

               
               
               Conread position:1-243
               
               
               Cow position:chr29:5550446-5550204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr29:528844-529159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 156

               
               
               Conread position:1-322
               
               
               Cow position:chr29:2694376-2694059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr29:10652785-10652466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 160

               
               
               Conread position:1-322
               
               
               Cow position:chr29:19398335-19398018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-322
               
               
               Cow position:chr29:29701532-29701851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):68, 24

               
               
               Conread position:1-322
               
               
               Cow position:chr29:32175933-32175631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 81

               
               
               Conread position:1-351
               
               
               Cow position:chr29:13634888-13635236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-355
               
               
               Cow position:chr29:735096-735465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:265
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-403
               
               
               Cow position:chr29:27814451-27814053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 132

               
               
               Conread position:1-413
               
               
               Cow position:chr29:19761718-19761311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 39

               
               
               Conread position:1-436
               
               
               Cow position:chr29:43517288-43517753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-444
               
               
               Cow position:chr29:35076806-35076344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 165

               
               
               Conread position:1-455
               
               
               Cow position:chr29:4875462-4875922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-461
               
               
               Cow position:chr29:2589465-2589942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:308
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):47, 159

               
               
               Conread position:1-464
               
               
               Cow position:chr29:17965483-17964999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:1-467
               
               
               Cow position:chr29:18879223-18879701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 164

               
               
               Conread position:1-475
               
               
               Cow position:chr29:26336068-26336525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:319
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:1-484
               
               
               Cow position:chr29:14207892-14208387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-487
               
               
               Cow position:chr29:7664318-7664821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 167

               
               
               Conread position:1-487
               
               
               Cow position:chr29:45650875-45651364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:1-489
               
               
               Cow position:chr29:2103517-2103022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 161

               
               
               Conread position:1-489
               
               
               Cow position:chr29:2744828-2745327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 105

               
               
               Conread position:1-489
               
               
               Cow position:chr29:5241071-5240569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr29:6871597-6872102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:1-489
               
               
               Cow position:chr29:7427465-7427967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr29:7724337-7723848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr29:7811521-7812022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 42

               
               
               Conread position:1-489
               
               
               Cow position:chr29:8623559-8624021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:341
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):293, 34

               
               
               Conread position:1-489
               
               
               Cow position:chr29:9638862-9639355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 149

               
               
               Conread position:1-489
               
               
               Cow position:chr29:10820039-10820540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr29:11365692-11365194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr29:12798260-12797757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr29:13027879-13027397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-489
               
               
               Cow position:chr29:13058379-13057915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 154

               
               
               Conread position:1-489
               
               
               Cow position:chr29:14313473-14313974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr29:17153924-17153420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 136

               
               
               Conread position:1-489
               
               
               Cow position:chr29:19514663-19515169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr29:19619593-19620094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr29:20254839-20254341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr29:21255638-21255132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr29:26263297-26262797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 77

               
               
               Conread position:1-489
               
               
               Cow position:chr29:28696705-28697204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 158

               
               
               Conread position:1-489
               
               
               Cow position:chr29:30432519-30433017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr29:31185052-31184551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr29:32543814-32543313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 104

               
               
               Conread position:1-489
               
               
               Cow position:chr29:32732774-32732275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr29:34794182-34794688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr29:35739056-35739523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 64

               
               
               Conread position:1-489
               
               
               Cow position:chr29:43963879-43964383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:343
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):45, 13

               
               
               Conread position:1-489
               
               
               Cow position:chr29:45208175-45207685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 130

               
               
               Conread position:1-489
               
               
               Cow position:chr29:45462907-45462408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:3-322
               
               
               Cow position:chr29:8136813-8137134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):47, 103

               
               
               Conread position:4-247
               
               
               Cow position:chr29:29065869-29065627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):36, 138

               
               
               Conread position:4-489
               
               
               Cow position:chr29:7605074-7604566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 157

               
               
               Conread position:5-308
               
               
               Cow position:chr29:24265927-24265626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 25

               
               
               Conread position:5-399
               
               
               Cow position:chr29:8589065-8589471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 155

               
               
               Conread position:5-489
               
               
               Cow position:chr29:6218146-6218631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 135

               
               
               Conread position:6-322
               
               
               Cow position:chr29:13590272-13590585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 154

               
               
               Conread position:6-489
               
               
               Cow position:chr29:13128985-13129450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 26

               
               
               Conread position:6-489
               
               
               Cow position:chr29:29550185-29549702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:334
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):62, 11

               
               
               Conread position:8-282
               
               
               Cow position:chr29:13553577-13553290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):39, 152

               
               
               Conread position:8-457
               
               
               Cow position:chr29:3106956-3106512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 153

               
               
               Conread position:8-487
               
               
               Cow position:chr29:9939135-9939624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 15

               
               
               Conread position:8-488
               
               
               Cow position:chr29:34737038-34737516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 65

               
               
               Conread position:8-489
               
               
               Cow position:chr29:35228338-35227844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 83

               
               
               Conread position:9-239
               
               
               Cow position:chr29:9332585-9332340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):41, 159

               
               
               Conread position:9-293
               
               
               Cow position:chr29:28621801-28622081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 153

               
               
               Conread position:9-396
               
               
               Cow position:chr29:14116479-14116085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 125

               
               
               Conread position:9-487
               
               
               Cow position:chr29:649704-649229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:9-489
               
               
               Cow position:chr29:11786670-11786178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 149

               
               
               Conread position:9-489
               
               
               Cow position:chr29:32808025-32807543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 23

               
               
               Conread position:10-489
               
               
               Cow position:chr29:138026-137534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:335
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:12-361
               
               
               Cow position:chr29:87551-87900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 114

               
               
               Conread position:12-489
               
               
               Cow position:chr29:32962973-32962490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 108

               
               
               Conread position:12-489
               
               
               Cow position:chr29:38229668-38229182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 148

               
               
               Conread position:23-348
               
               
               Cow position:chr29:40096181-40095862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 142

               
               
               Conread position:30-322
               
               
               Cow position:chr29:18364982-18365265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:46-489
               
               
               Cow position:chr29:26997470-26997027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:298
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:49-299
               
               
               Cow position:chr29:14051031-14051271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):37, 106

               
               
               Conread position:49-312
               
               
               Cow position:chr29:39553176-39553436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 124

               
               
               Conread position:49-466
               
               
               Cow position:chr29:7290167-7289747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 98

               
               
               Conread position:65-250
               
               
               Cow position:chr29:30270246-30270426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):21, 91

               
               
               Conread position:66-489
               
               
               Cow position:chr29:2837730-2838161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 89

               
               
               Conread position:72-475
               
               
               Cow position:chr29:960798-960389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 63

               
               
               Conread position:72-489
               
               
               Cow position:chr29:43327115-43326689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:84-488
               
               
               Cow position:chr29:39076133-39076543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 69

               
               
               Conread position:87-464
               
               
               Cow position:chr29:20999786-20999415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 66

               
               
               Conread position:112-344
               
               
               Cow position:chr29:1605168-1605402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 158

               
               
               Conread position:112-489
               
               
               Cow position:chr29:45521250-45520886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):304, 41

               
               
               Conread position:115-324
               
               
               Cow position:chr29:4200944-4200750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:119-489
               
               
               Cow position:chr29:5961554-5961180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 34

               
               
               Conread position:122-489
               
               
               Cow position:chr29:27259330-27259710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 26

               
               
               Conread position:125-487
               
               
               Cow position:chr29:35002129-35002497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 30

               
               
               Conread position:155-489
               
               
               Cow position:chr29:7748192-7748520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):179, 19

               
               
               Conread position:155-489
               
               
               Cow position:chr29:32644071-32643742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 41

               
               
               Conread position:161-487
               
               
               Cow position:chr29:13849438-13849770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:249
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):95, 16

               
               
               Conread position:164-483
               
               
               Cow position:chr29:40418173-40418494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):173, 108

               
               
               Conread position:181-489
               
               
               Cow position:chr29:15941530-15941851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):112, 89

               
               
               Conread position:184-460
               
               
               Cow position:chr29:35280619-35280924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):27, 90

               
               
               Conread position:185-489
               
               
               Cow position:chr29:27858044-27857747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 18

               
               
               Conread position:188-488
               
               
               Cow position:chr29:36633870-36634173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 78

               
               
               Conread position:189-489
               
               
               Cow position:chr29:3584730-3585037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 77

               
               
               Conread position:196-474
               
               
               Cow position:chr29:4864801-4864504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):127, 94

               
               
               Conread position:314-482
               
               
               Cow position:chr29:29589645-29589814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:321-487
               
               
               Cow position:chr29:16012834-16012994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-227
               
               
               Cow position:chr3:68663159-68662938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):52, 118

               
               
               Conread position:1-243
               
               
               Cow position:chr3:73211418-73211178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-276
               
               
               Cow position:chr3:56336091-56336364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-278
               
               
               Cow position:chr3:77187871-77187599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 162

               
               
               Conread position:1-292
               
               
               Cow position:chr3:64216160-64215870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-297
               
               
               Cow position:chr3:37009156-37009448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-299
               
               
               Cow position:chr3:48269282-48268986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:1-301
               
               
               Cow position:chr3:13084952-13085249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):48, 162

               
               
               Conread position:1-301
               
               
               Cow position:chr3:45215213-45215499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):49, 105

               
               
               Conread position:1-306
               
               
               Cow position:chr3:32619423-32619732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):48, 161

               
               
               Conread position:1-307
               
               
               Cow position:chr3:70891032-70890729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 154

               
               
               Conread position:1-319
               
               
               Cow position:chr3:75157769-75158074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 134

               
               
               Conread position:1-321
               
               
               Cow position:chr3:36570843-36571162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 162

               
               
               Conread position:1-321
               
               
               Cow position:chr3:39065500-39065191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):49, 99

               
               
               Conread position:1-322
               
               
               Cow position:chr3:9665363-9665681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr3:13275688-13276006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr3:21100393-21100075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr3:46349801-46349497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):169, 76

               
               
               Conread position:1-322
               
               
               Cow position:chr3:48600116-48599810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):49, 157

               
               
               Conread position:1-322
               
               
               Cow position:chr3:54608423-54608736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr3:61278336-61278022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 106

               
               
               Conread position:1-322
               
               
               Cow position:chr3:80564388-80564072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 136

               
               
               Conread position:1-324
               
               
               Cow position:chr3:2537682-2537373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:244
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):14, 119

               
               
               Conread position:1-354
               
               
               Cow position:chr3:16333010-16332659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 91

               
               
               Conread position:1-379
               
               
               Cow position:chr3:2507053-2507441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:1-379
               
               
               Cow position:chr3:16157106-16156723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 153

               
               
               Conread position:1-387
               
               
               Cow position:chr3:22919110-22918715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 161

               
               
               Conread position:1-388
               
               
               Cow position:chr3:18460098-18460504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 134

               
               
               Conread position:1-397
               
               
               Cow position:chr3:73763047-73763450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 127

               
               
               Conread position:1-405
               
               
               Cow position:chr3:45881320-45880916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 88

               
               
               Conread position:1-427
               
               
               Cow position:chr3:68501047-68500610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-440
               
               
               Cow position:chr3:24432966-24432519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:1-446
               
               
               Cow position:chr3:11784940-11784495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 31

               
               
               Conread position:1-451
               
               
               Cow position:chr3:35056551-35056108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:1-453
               
               
               Cow position:chr3:23169647-23170084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 27

               
               
               Conread position:1-454
               
               
               Cow position:chr3:37600321-37599860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 130

               
               
               Conread position:1-455
               
               
               Cow position:chr3:22234902-22235376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 115

               
               
               Conread position:1-468
               
               
               Cow position:chr3:23010941-23010463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-474
               
               
               Cow position:chr3:26920317-26919826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 168

               
               
               Conread position:1-477
               
               
               Cow position:chr3:43662822-43662352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 124

               
               
               Conread position:1-481
               
               
               Cow position:chr3:2118042-2117543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 105

               
               
               Conread position:1-482
               
               
               Cow position:chr3:42846933-42846442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-484
               
               
               Cow position:chr3:3031820-3031333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-484
               
               
               Cow position:chr3:24585638-24586142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-484
               
               
               Cow position:chr3:26567364-26566868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-484
               
               
               Cow position:chr3:38870155-38869661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-485
               
               
               Cow position:chr3:55461078-55461564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 105

               
               
               Conread position:1-487
               
               
               Cow position:chr3:14466282-14466771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 154

               
               
               Conread position:1-489
               
               
               Cow position:chr3:174087-173595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr3:2903876-2904354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 22

               
               
               Conread position:1-489
               
               
               Cow position:chr3:3837018-3837504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 117

               
               
               Conread position:1-489
               
               
               Cow position:chr3:4031337-4030839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr3:5887473-5886975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr3:6785903-6785406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 154

               
               
               Conread position:1-489
               
               
               Cow position:chr3:13311408-13311917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 163

               
               
               Conread position:1-489
               
               
               Cow position:chr3:14438399-14438895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr3:14864470-14863973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 14

               
               
               Conread position:1-489
               
               
               Cow position:chr3:15655727-15656221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 161

               
               
               Conread position:1-489
               
               
               Cow position:chr3:16657283-16657778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 130

               
               
               Conread position:1-489
               
               
               Cow position:chr3:19216487-19216005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-489
               
               
               Cow position:chr3:19717683-19718178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:1-489
               
               
               Cow position:chr3:19753146-19753638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr3:19881639-19881138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr3:20476088-20475603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 94

               
               
               Conread position:1-489
               
               
               Cow position:chr3:21178667-21179170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr3:21303006-21303475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 95

               
               
               Conread position:1-489
               
               
               Cow position:chr3:23286762-23287246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 81

               
               
               Conread position:1-489
               
               
               Cow position:chr3:24442517-24443014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 161

               
               
               Conread position:1-489
               
               
               Cow position:chr3:26722230-26722723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 86

               
               
               Conread position:1-489
               
               
               Cow position:chr3:27546846-27547360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr3:33124669-33125166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr3:34556800-34557281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 122

               
               
               Conread position:1-489
               
               
               Cow position:chr3:37982776-37983277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr3:38096490-38095988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr3:40101265-40101763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 164

               
               
               Conread position:1-489
               
               
               Cow position:chr3:40520350-40520851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr3:43189676-43190181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 170

               
               
               Conread position:1-489
               
               
               Cow position:chr3:45184412-45184896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:1-489
               
               
               Cow position:chr3:45312388-45311881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 285

               
               
               Conread position:1-489
               
               
               Cow position:chr3:45691470-45691949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 154

               
               
               Conread position:1-489
               
               
               Cow position:chr3:46506358-46505857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr3:46753430-46752935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 84

               
               
               Conread position:1-489
               
               
               Cow position:chr3:47272289-47272791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr3:48273375-48272870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr3:49336775-49336285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:1-489
               
               
               Cow position:chr3:49388239-49387741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr3:49416261-49416759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 156

               
               
               Conread position:1-489
               
               
               Cow position:chr3:50921616-50921129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):311, 63

               
               
               Conread position:1-489
               
               
               Cow position:chr3:52256930-52257426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 156

               
               
               Conread position:1-489
               
               
               Cow position:chr3:54653570-54654086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr3:57481157-57481648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 41

               
               
               Conread position:1-489
               
               
               Cow position:chr3:59603390-59602890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-489
               
               
               Cow position:chr3:60177523-60178012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 132

               
               
               Conread position:1-489
               
               
               Cow position:chr3:62793499-62793987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr3:63688335-63688821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 23

               
               
               Conread position:1-489
               
               
               Cow position:chr3:64654256-64653757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 63

               
               
               Conread position:1-489
               
               
               Cow position:chr3:65085523-65085023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr3:65581613-65582106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 52

               
               
               Conread position:1-489
               
               
               Cow position:chr3:66829361-66829850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 12

               
               
               Conread position:1-489
               
               
               Cow position:chr3:69930247-69930745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr3:73450723-73451225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr3:75038252-75038753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr3:75997304-75997800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 123

               
               
               Conread position:1-489
               
               
               Cow position:chr3:78023858-78024347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 80

               
               
               Conread position:1-489
               
               
               Cow position:chr3:84199359-84198871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 145

               
               
               Conread position:2-489
               
               
               Cow position:chr3:1483608-1483118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 132

               
               
               Conread position:4-318
               
               
               Cow position:chr3:63176928-63176623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 82

               
               
               Conread position:4-322
               
               
               Cow position:chr3:16005213-16005538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 158

               
               
               Conread position:4-322
               
               
               Cow position:chr3:75479440-75479133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:4-342
               
               
               Cow position:chr3:11019030-11018688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 157

               
               
               Conread position:4-344
               
               
               Cow position:chr3:9639443-9639764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):140, 66

               
               
               Conread position:4-424
               
               
               Cow position:chr3:72390505-72390072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 156

               
               
               Conread position:4-488
               
               
               Cow position:chr3:60184584-60185081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 130

               
               
               Conread position:4-489
               
               
               Cow position:chr3:2851651-2852148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 32

               
               
               Conread position:4-489
               
               
               Cow position:chr3:17937431-17937913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 126

               
               
               Conread position:4-489
               
               
               Cow position:chr3:35884535-35885032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 99

               
               
               Conread position:4-489
               
               
               Cow position:chr3:58951044-58950550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 155

               
               
               Conread position:4-489
               
               
               Cow position:chr3:59865066-59864571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-489
               
               
               Cow position:chr3:72633659-72633162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:5-293
               
               
               Cow position:chr3:82275084-82275370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 141

               
               
               Conread position:5-320
               
               
               Cow position:chr3:49132835-49133126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:5-453
               
               
               Cow position:chr3:14280261-14279811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 30

               
               
               Conread position:5-458
               
               
               Cow position:chr3:69272187-69271721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 158

               
               
               Conread position:5-488
               
               
               Cow position:chr3:14285313-14284825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 156

               
               
               Conread position:5-489
               
               
               Cow position:chr3:3884610-3885108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 10

               
               
               Conread position:5-489
               
               
               Cow position:chr3:4039350-4039843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 86

               
               
               Conread position:5-489
               
               
               Cow position:chr3:64171813-64171335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 10

               
               
               Conread position:6-382
               
               
               Cow position:chr3:61539184-61538802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 154

               
               
               Conread position:7-486
               
               
               Cow position:chr3:42187052-42186561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:7-489
               
               
               Cow position:chr3:52651371-52651848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 134

               
               
               Conread position:8-461
               
               
               Cow position:chr3:51254980-51254517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 152

               
               
               Conread position:8-486
               
               
               Cow position:chr3:54346825-54347313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 122

               
               
               Conread position:8-489
               
               
               Cow position:chr3:16114979-16114494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 117

               
               
               Conread position:8-489
               
               
               Cow position:chr3:16716258-16716738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 149

               
               
               Conread position:8-489
               
               
               Cow position:chr3:24262261-24262745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 20

               
               
               Conread position:8-489
               
               
               Cow position:chr3:31933756-31934249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 123

               
               
               Conread position:8-489
               
               
               Cow position:chr3:80929706-80930165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:323
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):71, 20

               
               
               Conread position:9-275
               
               
               Cow position:chr3:56302226-56302489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 150

               
               
               Conread position:9-286
               
               
               Cow position:chr3:74700234-74700513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 150

               
               
               Conread position:9-322
               
               
               Cow position:chr3:23944540-23944236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 151

               
               
               Conread position:9-356
               
               
               Cow position:chr3:26974055-26974417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 147

               
               
               Conread position:9-364
               
               
               Cow position:chr3:18184487-18184130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 19

               
               
               Conread position:9-414
               
               
               Cow position:chr3:76136901-76136482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 102

               
               
               Conread position:9-422
               
               
               Cow position:chr3:18575042-18575459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 153

               
               
               Conread position:9-430
               
               
               Cow position:chr3:60932847-60932414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 151

               
               
               Conread position:9-487
               
               
               Cow position:chr3:49462989-49463464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 103

               
               
               Conread position:9-489
               
               
               Cow position:chr3:6689395-6688916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 55

               
               
               Conread position:9-489
               
               
               Cow position:chr3:23497181-23497669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 145

               
               
               Conread position:9-489
               
               
               Cow position:chr3:42603238-42602745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 151

               
               
               Conread position:9-489
               
               
               Cow position:chr3:53047220-53047704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 116

               
               
               Conread position:9-489
               
               
               Cow position:chr3:54863041-54863533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 151

               
               
               Conread position:9-489
               
               
               Cow position:chr3:61678114-61677627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 33

               
               
               Conread position:9-489
               
               
               Cow position:chr3:63219505-63219025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 112

               
               
               Conread position:10-300
               
               
               Cow position:chr3:76923727-76924003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):157, 76

               
               
               Conread position:10-347
               
               
               Cow position:chr3:76926988-76926658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):28, 148

               
               
               Conread position:10-447
               
               
               Cow position:chr3:1299667-1299226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:309
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:10-485
               
               
               Cow position:chr3:19109143-19108652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 150

               
               
               Conread position:10-489
               
               
               Cow position:chr3:6897406-6896915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 124

               
               
               Conread position:10-489
               
               
               Cow position:chr3:64376138-64376622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 85

               
               
               Conread position:12-451
               
               
               Cow position:chr3:57590904-57590474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:287
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):41, 30

               
               
               Conread position:12-489
               
               
               Cow position:chr3:24454965-24455429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 112

               
               
               Conread position:16-489
               
               
               Cow position:chr3:22353189-22352706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 112

               
               
               Conread position:18-485
               
               
               Cow position:chr3:24276126-24275662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:325
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):32, 71

               
               
               Conread position:23-489
               
               
               Cow position:chr3:16293348-16293820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 114

               
               
               Conread position:24-414
               
               
               Cow position:chr3:14633669-14634067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 116

               
               
               Conread position:24-451
               
               
               Cow position:chr3:33254297-33254732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 82

               
               
               Conread position:46-322
               
               
               Cow position:chr3:37040814-37040562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):40, 60

               
               
               Conread position:49-322
               
               
               Cow position:chr3:55454517-55454791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):36, 52

               
               
               Conread position:49-489
               
               
               Cow position:chr3:5951089-5951527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 85

               
               
               Conread position:49-489
               
               
               Cow position:chr3:16868870-16869307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:295
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):37, 87

               
               
               Conread position:49-489
               
               
               Cow position:chr3:72174769-72175217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 109

               
               
               Conread position:49-489
               
               
               Cow position:chr3:73416535-73416086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:50-489
               
               
               Cow position:chr3:6854073-6854538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 193

               
               
               Conread position:55-489
               
               
               Cow position:chr3:56103265-56102829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 30

               
               
               Conread position:56-489
               
               
               Cow position:chr3:35620091-35619646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 132

               
               
               Conread position:56-489
               
               
               Cow position:chr3:77226246-77225822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:66-437
               
               
               Cow position:chr3:17460736-17460365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 93

               
               
               Conread position:66-487
               
               
               Cow position:chr3:29130609-29130186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 74

               
               
               Conread position:69-489
               
               
               Cow position:chr3:72669044-72669473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 86

               
               
               Conread position:71-306
               
               
               Cow position:chr3:34027249-34027477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 86

               
               
               Conread position:71-483
               
               
               Cow position:chr3:57743021-57742608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 13

               
               
               Conread position:71-487
               
               
               Cow position:chr3:3652795-3653196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 13

               
               
               Conread position:72-445
               
               
               Cow position:chr3:20999558-20999939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 85

               
               
               Conread position:72-489
               
               
               Cow position:chr3:7476408-7476831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 34

               
               
               Conread position:72-489
               
               
               Cow position:chr3:33326896-33326471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:72-489
               
               
               Cow position:chr3:81101592-81101167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 84

               
               
               Conread position:77-322
               
               
               Cow position:chr3:11334355-11334590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):9, 78

               
               
               Conread position:79-489
               
               
               Cow position:chr3:24572662-24573078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 74

               
               
               Conread position:84-243
               
               
               Cow position:chr3:78261649-78261801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:84-322
               
               
               Cow position:chr3:11446942-11446708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):67, 184

               
               
               Conread position:84-322
               
               
               Cow position:chr3:73765149-73765377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:84-486
               
               
               Cow position:chr3:18886957-18886551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 69

               
               
               Conread position:84-487
               
               
               Cow position:chr3:7856921-7856515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 69

               
               
               Conread position:85-236
               
               
               Cow position:chr3:68515343-68515489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):138, 20

               
               
               Conread position:85-322
               
               
               Cow position:chr3:40978938-40978713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:89-457
               
               
               Cow position:chr3:15988431-15988060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 12

               
               
               Conread position:101-487
               
               
               Cow position:chr3:50347305-50346914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:277
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):71, 52

               
               
               Conread position:101-489
               
               
               Cow position:chr3:77427155-77426783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):248, 52

               
               
               Conread position:105-318
               
               
               Cow position:chr3:18253021-18252818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:107-373
               
               
               Cow position:chr3:6874599-6874859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):207, 46

               
               
               Conread position:107-489
               
               
               Cow position:chr3:38497277-38496885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 12

               
               
               Conread position:113-320
               
               
               Cow position:chr3:71246073-71245869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):70, 6

               
               
               Conread position:113-489
               
               
               Cow position:chr3:11384780-11384407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 6

               
               
               Conread position:113-489
               
               
               Cow position:chr3:54086915-54087277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):199, 40

               
               
               Conread position:117-489
               
               
               Cow position:chr3:39328005-39327637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 36

               
               
               Conread position:119-321
               
               
               Cow position:chr3:523669-523481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):198, 34

               
               
               Conread position:120-474
               
               
               Cow position:chr3:64281861-64282213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):179, 28

               
               
               Conread position:122-322
               
               
               Cow position:chr3:53387658-53387841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:155-489
               
               
               Cow position:chr3:77726869-77726549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):113, 20

               
               
               Conread position:157-489
               
               
               Cow position:chr3:8605483-8605816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):146, 14

               
               
               Conread position:177-489
               
               
               Cow position:chr3:27454523-27454844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 89

               
               
               Conread position:180-353
               
               
               Cow position:chr3:3061438-3061266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):156, 52

               
               
               Conread position:180-455
               
               
               Cow position:chr3:58766554-58766266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):128, 86

               
               
               Conread position:184-448
               
               
               Cow position:chr3:70336273-70336544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):106, 34

               
               
               Conread position:184-486
               
               
               Cow position:chr3:34464770-34464459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 82

               
               
               Conread position:184-489
               
               
               Cow position:chr3:63148234-63148550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):117, 91

               
               
               Conread position:185-439
               
               
               Cow position:chr3:7772629-7772878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:185-489
               
               
               Cow position:chr3:35509252-35508941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):153, 18

               
               
               Conread position:186-451
               
               
               Cow position:chr3:49429365-49429627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):161, 57

               
               
               Conread position:188-474
               
               
               Cow position:chr3:8391758-8391469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):145, 82

               
               
               Conread position:190-489
               
               
               Cow position:chr3:15663048-15663355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 72

               
               
               Conread position:190-489
               
               
               Cow position:chr3:38863119-38862817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):110, 25

               
               
               Conread position:194-484
               
               
               Cow position:chr3:42977196-42977496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):29, 39

               
               
               Conread position:199-489
               
               
               Cow position:chr3:27245302-27245601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):57, 72

               
               
               Conread position:201-478
               
               
               Cow position:chr3:37451491-37451200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):100, 69

               
               
               Conread position:206-479
               
               
               Cow position:chr3:64135514-64135247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):176, 60

               
               
               Conread position:209-377
               
               
               Cow position:chr3:35006143-35006305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:216-486
               
               
               Cow position:chr3:13117687-13117961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):112, 54

               
               
               Conread position:234-489
               
               
               Cow position:chr3:2432298-2432564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):61, 36

               
               
               Conread position:267-489
               
               
               Cow position:chr3:63238711-63238941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):61, 28

               
               
               Conread position:314-489
               
               
               Cow position:chr3:31120873-31121048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:321-489
               
               
               Cow position:chr3:11950027-11949870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:321-489
               
               
               Cow position:chr3:19797895-19798063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):65, 36

               
               
               Conread position:321-489
               
               
               Cow position:chr3:33691793-33691961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:322-489
               
               
               Cow position:chr3:21005067-21004901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):68, 28

               
               
               Conread position:323-489
               
               
               Cow position:chr3:48240508-48240341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:371-489
               
               
               Cow position:chr3:28639857-28639739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-229
               
               
               Cow position:chr4:12588988-12588760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:181
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-243
               
               
               Cow position:chr4:48411515-48411756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-268
               
               
               Cow position:chr4:3893165-3892896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-285
               
               
               Cow position:chr4:5284444-5284729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-293
               
               
               Cow position:chr4:31348775-31349062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 37

               
               
               Conread position:1-305
               
               
               Cow position:chr4:30170964-30171263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 145

               
               
               Conread position:1-318
               
               
               Cow position:chr4:10871947-10872263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):52, 5

               
               
               Conread position:1-320
               
               
               Cow position:chr4:41189114-41189419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-322
               
               
               Cow position:chr4:7806563-7806245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-322
               
               
               Cow position:chr4:16735705-16735389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 104

               
               
               Conread position:1-322
               
               
               Cow position:chr4:39421990-39421672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr4:39458064-39457746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr4:42480624-42480314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 109

               
               
               Conread position:1-322
               
               
               Cow position:chr4:46526448-46526151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):52, 100

               
               
               Conread position:1-322
               
               
               Cow position:chr4:51122430-51122117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):49, 105

               
               
               Conread position:1-322
               
               
               Cow position:chr4:58485076-58485388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr4:67652041-67652355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 103

               
               
               Conread position:1-323
               
               
               Cow position:chr4:43896102-43896421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-325
               
               
               Cow position:chr4:20585967-20586283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):49, 107

               
               
               Conread position:1-343
               
               
               Cow position:chr4:66548626-66548995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):50, 83

               
               
               Conread position:1-350
               
               
               Cow position:chr4:68362371-68362045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):53, 34

               
               
               Conread position:1-355
               
               
               Cow position:chr4:22743780-22743417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-366
               
               
               Cow position:chr4:34384022-34384389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 12

               
               
               Conread position:1-392
               
               
               Cow position:chr4:47774196-47774599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 160

               
               
               Conread position:1-396
               
               
               Cow position:chr4:22237036-22237420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 56

               
               
               Conread position:1-438
               
               
               Cow position:chr4:32249886-32249437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 133

               
               
               Conread position:1-445
               
               
               Cow position:chr4:54757869-54758317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 154

               
               
               Conread position:1-453
               
               
               Cow position:chr4:2190903-2191365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-465
               
               
               Cow position:chr4:2601594-2601130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 123

               
               
               Conread position:1-466
               
               
               Cow position:chr4:49745066-49744588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-468
               
               
               Cow position:chr4:46668047-46667577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-472
               
               
               Cow position:chr4:27997162-27996687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-473
               
               
               Cow position:chr4:62570086-62569607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 165

               
               
               Conread position:1-480
               
               
               Cow position:chr4:49032080-49031616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:310
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):49, 158

               
               
               Conread position:1-484
               
               
               Cow position:chr4:18096223-18096711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 8

               
               
               Conread position:1-484
               
               
               Cow position:chr4:33069447-33069948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 157

               
               
               Conread position:1-484
               
               
               Cow position:chr4:67383659-67383180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 133

               
               
               Conread position:1-486
               
               
               Cow position:chr4:14919452-14918954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 32

               
               
               Conread position:1-486
               
               
               Cow position:chr4:23494358-23493885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 163

               
               
               Conread position:1-486
               
               
               Cow position:chr4:25226368-25225883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 94

               
               
               Conread position:1-487
               
               
               Cow position:chr4:27287712-27288209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-487
               
               
               Cow position:chr4:33496954-33496458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-488
               
               
               Cow position:chr4:3849990-3849494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 69

               
               
               Conread position:1-489
               
               
               Cow position:chr4:359277-358779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr4:1027831-1028337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr4:1499700-1500195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr4:2263316-2263815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 149

               
               
               Conread position:1-489
               
               
               Cow position:chr4:3354551-3355043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr4:4085983-4086469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 16

               
               
               Conread position:1-489
               
               
               Cow position:chr4:4185562-4185072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr4:8674122-8673632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 14

               
               
               Conread position:1-489
               
               
               Cow position:chr4:10044374-10044873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr4:10885032-10884534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 117

               
               
               Conread position:1-489
               
               
               Cow position:chr4:11107696-11108180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 78

               
               
               Conread position:1-489
               
               
               Cow position:chr4:11193356-11192849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 165

               
               
               Conread position:1-489
               
               
               Cow position:chr4:12605491-12605977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 109

               
               
               Conread position:1-489
               
               
               Cow position:chr4:16642210-16641712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-489
               
               
               Cow position:chr4:17067718-17068214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr4:18845185-18844702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-489
               
               
               Cow position:chr4:19237461-19236963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 88

               
               
               Conread position:1-489
               
               
               Cow position:chr4:19957422-19956919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr4:22317134-22316619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 166

               
               
               Conread position:1-489
               
               
               Cow position:chr4:22850283-22850777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr4:26548858-26548363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr4:26874513-26875014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 105

               
               
               Conread position:1-489
               
               
               Cow position:chr4:27178218-27177722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:1-489
               
               
               Cow position:chr4:30508594-30508093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:1-489
               
               
               Cow position:chr4:34713211-34712711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr4:36025876-36026376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr4:37786696-37786196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 34

               
               
               Conread position:1-489
               
               
               Cow position:chr4:38584272-38583775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 154

               
               
               Conread position:1-489
               
               
               Cow position:chr4:42330336-42330827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr4:43884488-43883987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr4:46711211-46711712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 37

               
               
               Conread position:1-489
               
               
               Cow position:chr4:52086547-52086050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 51

               
               
               Conread position:1-489
               
               
               Cow position:chr4:54931233-54931712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 145

               
               
               Conread position:1-489
               
               
               Cow position:chr4:55670635-55670143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr4:57988138-57987638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr4:61242663-61242177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 63

               
               
               Conread position:1-489
               
               
               Cow position:chr4:61625194-61625669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:1-489
               
               
               Cow position:chr4:65919060-65918583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 8

               
               
               Conread position:2-332
               
               
               Cow position:chr4:9292195-9291857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):46, 79

               
               
               Conread position:2-460
               
               
               Cow position:chr4:45764594-45765058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:312
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):48, 75

               
               
               Conread position:3-333
               
               
               Cow position:chr4:56226330-56226010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):50, 122

               
               
               Conread position:3-466
               
               
               Cow position:chr4:19141410-19140919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 25

               
               
               Conread position:4-277
               
               
               Cow position:chr4:35260995-35261267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-315
               
               
               Cow position:chr4:1365803-1366124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:241
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):49, 157

               
               
               Conread position:4-316
               
               
               Cow position:chr4:18108235-18107924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 27

               
               
               Conread position:4-322
               
               
               Cow position:chr4:53316645-53316960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 159

               
               
               Conread position:4-379
               
               
               Cow position:chr4:43867078-43867465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 65

               
               
               Conread position:4-485
               
               
               Cow position:chr4:3283972-3284460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 101

               
               
               Conread position:4-487
               
               
               Cow position:chr4:27292517-27292994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 117

               
               
               Conread position:4-489
               
               
               Cow position:chr4:3475062-3474570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 156

               
               
               Conread position:4-489
               
               
               Cow position:chr4:44901656-44901152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:5-268
               
               
               Cow position:chr4:54494273-54494013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 13

               
               
               Conread position:5-320
               
               
               Cow position:chr4:18973883-18973573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 158

               
               
               Conread position:6-294
               
               
               Cow position:chr4:14543046-14543330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):43, 128

               
               
               Conread position:6-436
               
               
               Cow position:chr4:61651165-61651608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 85

               
               
               Conread position:7-320
               
               
               Cow position:chr4:22014035-22014341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 153

               
               
               Conread position:7-489
               
               
               Cow position:chr4:14142705-14142201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 120

               
               
               Conread position:7-489
               
               
               Cow position:chr4:27540052-27539560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 74

               
               
               Conread position:8-383
               
               
               Cow position:chr4:33399083-33399472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 148

               
               
               Conread position:8-397
               
               
               Cow position:chr4:59889176-59889590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:295
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):42, 148

               
               
               Conread position:8-412
               
               
               Cow position:chr4:51014459-51014035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 146

               
               
               Conread position:8-449
               
               
               Cow position:chr4:25192480-25192943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:314
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:8-461
               
               
               Cow position:chr4:38939952-38940389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:294
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):60, 33

               
               
               Conread position:8-489
               
               
               Cow position:chr4:9821525-9821040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:8-489
               
               
               Cow position:chr4:48497066-48496571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 145

               
               
               Conread position:8-489
               
               
               Cow position:chr4:58688515-58689002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 148

               
               
               Conread position:9-286
               
               
               Cow position:chr4:19006879-19006603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:9-293
               
               
               Cow position:chr4:33613211-33613512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):41, 139

               
               
               Conread position:9-361
               
               
               Cow position:chr4:21364629-21364285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):77, 72

               
               
               Conread position:9-372
               
               
               Cow position:chr4:45239739-45239375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):44, 146

               
               
               Conread position:9-484
               
               
               Cow position:chr4:17833462-17833941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 118

               
               
               Conread position:9-484
               
               
               Cow position:chr4:54147057-54147514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 37

               
               
               Conread position:9-489
               
               
               Cow position:chr4:962209-962694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 91

               
               
               Conread position:9-489
               
               
               Cow position:chr4:5610627-5611106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 35

               
               
               Conread position:9-489
               
               
               Cow position:chr4:20091498-20091005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 272

               
               
               Conread position:9-489
               
               
               Cow position:chr4:28173485-28173978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 59

               
               
               Conread position:9-489
               
               
               Cow position:chr4:38181121-38180654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):299, 37

               
               
               Conread position:10-241
               
               
               Cow position:chr4:41469828-41470050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 112

               
               
               Conread position:10-356
               
               
               Cow position:chr4:47269555-47269194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 152

               
               
               Conread position:10-365
               
               
               Cow position:chr4:49885905-49886260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):40, 151

               
               
               Conread position:12-489
               
               
               Cow position:chr4:22024721-22025194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 30

               
               
               Conread position:17-309
               
               
               Cow position:chr4:37703691-37703406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):24, 142

               
               
               Conread position:17-489
               
               
               Cow position:chr4:68880896-68880407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 36

               
               
               Conread position:21-489
               
               
               Cow position:chr4:7214415-7214883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:338
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):27, 91

               
               
               Conread position:22-320
               
               
               Cow position:chr4:10992891-10993201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):31, 155

               
               
               Conread position:23-322
               
               
               Cow position:chr4:30573331-30573035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 137

               
               
               Conread position:24-320
               
               
               Cow position:chr4:25352228-25352505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):29, 66

               
               
               Conread position:24-489
               
               
               Cow position:chr4:6167599-6168077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 65

               
               
               Conread position:44-488
               
               
               Cow position:chr4:5874414-5873997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 61

               
               
               Conread position:49-485
               
               
               Cow position:chr4:2140399-2139959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 30

               
               
               Conread position:49-489
               
               
               Cow position:chr4:35868539-35868089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 106

               
               
               Conread position:49-489
               
               
               Cow position:chr4:65842538-65842999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 230

               
               
               Conread position:50-489
               
               
               Cow position:chr4:65581846-65581409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:52-489
               
               
               Cow position:chr4:68796043-68795606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 104

               
               
               Conread position:54-322
               
               
               Cow position:chr4:23508533-23508276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:204
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):29, 101

               
               
               Conread position:56-489
               
               
               Cow position:chr4:59784007-59783570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 99

               
               
               Conread position:57-489
               
               
               Cow position:chr4:3961565-3961994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 27

               
               
               Conread position:64-461
               
               
               Cow position:chr4:65415856-65416260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):22, 71

               
               
               Conread position:65-219
               
               
               Cow position:chr4:13327801-13327951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):21, 90

               
               
               Conread position:70-487
               
               
               Cow position:chr4:61952827-61952392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:291
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):23, 204

               
               
               Conread position:72-466
               
               
               Cow position:chr4:55509524-55509940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 200

               
               
               Conread position:77-489
               
               
               Cow position:chr4:44593089-44593498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 78

               
               
               Conread position:79-305
               
               
               Cow position:chr4:10838036-10838252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:79-326
               
               
               Cow position:chr4:68386834-68386597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):114, 7

               
               
               Conread position:84-487
               
               
               Cow position:chr4:18812905-18813314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 68

               
               
               Conread position:84-489
               
               
               Cow position:chr4:1239122-1239524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:285
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):92, 60

               
               
               Conread position:84-489
               
               
               Cow position:chr4:16363505-16363094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 69

               
               
               Conread position:84-489
               
               
               Cow position:chr4:20243461-20243050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 69

               
               
               Conread position:84-489
               
               
               Cow position:chr4:26468529-26468126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 21

               
               
               Conread position:84-489
               
               
               Cow position:chr4:61272286-61272691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:286
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):158, 69

               
               
               Conread position:85-464
               
               
               Cow position:chr4:12751679-12751283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 68

               
               
               Conread position:86-323
               
               
               Cow position:chr4:20607050-20606811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:185
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):84, 51

               
               
               Conread position:89-489
               
               
               Cow position:chr4:66669890-66670289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:247
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):57, 61

               
               
               Conread position:99-291
               
               
               Cow position:chr4:14229213-14229399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):147, 54

               
               
               Conread position:100-487
               
               
               Cow position:chr4:34700270-34700655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 27

               
               
               Conread position:103-489
               
               
               Cow position:chr4:12841225-12840835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 14

               
               
               Conread position:113-489
               
               
               Cow position:chr4:36812285-36811915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):188, 40

               
               
               Conread position:125-299
               
               
               Cow position:chr4:10205-10371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:127-489
               
               
               Cow position:chr4:65431542-65431175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:138-449
               
               
               Cow position:chr4:22724184-22723878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):162, 16

               
               
               Conread position:147-483
               
               
               Cow position:chr4:58859362-58859703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):151, 28

               
               
               Conread position:155-489
               
               
               Cow position:chr4:36755022-36754679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 20

               
               
               Conread position:156-489
               
               
               Cow position:chr4:54973285-54972944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 19

               
               
               Conread position:158-489
               
               
               Cow position:chr4:38153066-38153410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 17

               
               
               Conread position:178-489
               
               
               Cow position:chr4:10134987-10135308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 81

               
               
               Conread position:179-466
               
               
               Cow position:chr4:22073882-22074176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):114, 87

               
               
               Conread position:180-481
               
               
               Cow position:chr4:21364284-21363982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):148, 69

               
               
               Conread position:180-489
               
               
               Cow position:chr4:26400002-26399684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 70

               
               
               Conread position:182-482
               
               
               Cow position:chr4:34166831-34167133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 63

               
               
               Conread position:188-411
               
               
               Cow position:chr4:55520561-55520325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):136, 78

               
               
               Conread position:188-488
               
               
               Cow position:chr4:45499379-45499076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):122, 82

               
               
               Conread position:194-487
               
               
               Cow position:chr4:15463230-15463530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 76

               
               
               Conread position:206-489
               
               
               Cow position:chr4:65890971-65890687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):125, 60

               
               
               Conread position:213-489
               
               
               Cow position:chr4:6000251-6000541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):108, 62

               
               
               Conread position:215-487
               
               
               Cow position:chr4:9796172-9796454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):90, 55

               
               
               Conread position:233-487
               
               
               Cow position:chr4:32937-33196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):95, 37

               
               
               Conread position:242-483
               
               
               Cow position:chr4:27293942-27294188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):28, 122

               
               
               Conread position:244-447
               
               
               Cow position:chr4:5578670-5578886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):74, 26

               
               
               Conread position:275-489
               
               
               Cow position:chr4:28739681-28739461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):29, 90

               
               
               Conread position:313-489
               
               
               Cow position:chr4:21843451-21843626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):73, 7

               
               
               Conread position:322-489
               
               
               Cow position:chr4:17919893-17920060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):62, 35

               
               
               Conread position:322-489
               
               
               Cow position:chr4:41190108-41190269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:329-487
               
               
               Cow position:chr4:55273207-55273048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):13, 30

               
               
               Conread position:1-215
               
               
               Cow position:chr5:27046403-27046189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-235
               
               
               Cow position:chr5:38831714-38831478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 160

               
               
               Conread position:1-243
               
               
               Cow position:chr5:37758347-37758587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:1-243
               
               
               Cow position:chr5:53855179-53854955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):85, 38

               
               
               Conread position:1-255
               
               
               Cow position:chr5:30276174-30275925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):63, 91

               
               
               Conread position:1-257
               
               
               Cow position:chr5:25231536-25231792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):33, 152

               
               
               Conread position:1-277
               
               
               Cow position:chr5:34584699-34584965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):85, 62

               
               
               Conread position:1-286
               
               
               Cow position:chr5:48405517-48405811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):49, 130

               
               
               Conread position:1-318
               
               
               Cow position:chr5:19470761-19471082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-320
               
               
               Cow position:chr5:25495916-25496230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 85

               
               
               Conread position:1-322
               
               
               Cow position:chr5:9676137-9676452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:1-322
               
               
               Cow position:chr5:25926942-25927249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):48, 107

               
               
               Conread position:1-322
               
               
               Cow position:chr5:31217584-31217269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 161

               
               
               Conread position:1-322
               
               
               Cow position:chr5:50599554-50599236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 161

               
               
               Conread position:1-322
               
               
               Cow position:chr5:52645848-52646163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr5:72007405-72007716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 75

               
               
               Conread position:1-355
               
               
               Cow position:chr5:7277382-7277020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):46, 177

               
               
               Conread position:1-375
               
               
               Cow position:chr5:52040994-52041374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 159

               
               
               Conread position:1-379
               
               
               Cow position:chr5:59268914-59268522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-396
               
               
               Cow position:chr5:43984578-43984171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 158

               
               
               Conread position:1-396
               
               
               Cow position:chr5:53185009-53185414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 111

               
               
               Conread position:1-412
               
               
               Cow position:chr5:14904594-14905000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 87

               
               
               Conread position:1-414
               
               
               Cow position:chr5:279685-280110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 159

               
               
               Conread position:1-421
               
               
               Cow position:chr5:6670685-6671107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-421
               
               
               Cow position:chr5:41951574-41951996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 113

               
               
               Conread position:1-431
               
               
               Cow position:chr5:46797393-46796960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 106

               
               
               Conread position:1-445
               
               
               Cow position:chr5:34528049-34527615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 35

               
               
               Conread position:1-447
               
               
               Cow position:chr5:7175793-7175334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 24

               
               
               Conread position:1-448
               
               
               Cow position:chr5:75754629-75755082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-460
               
               
               Cow position:chr5:66338340-66337887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:320
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):49, 82

               
               
               Conread position:1-468
               
               
               Cow position:chr5:44708877-44709355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-471
               
               
               Cow position:chr5:15722829-15723304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):323, 58

               
               
               Conread position:1-478
               
               
               Cow position:chr5:41980880-41980421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-482
               
               
               Cow position:chr5:2917950-2917463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 90

               
               
               Conread position:1-483
               
               
               Cow position:chr5:17027561-17027077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 141

               
               
               Conread position:1-483
               
               
               Cow position:chr5:28223934-28223440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 157

               
               
               Conread position:1-484
               
               
               Cow position:chr5:35207731-35207241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-487
               
               
               Cow position:chr5:5937794-5937303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 52

               
               
               Conread position:1-487
               
               
               Cow position:chr5:10853339-10853836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-487
               
               
               Cow position:chr5:18404575-18405058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 104

               
               
               Conread position:1-487
               
               
               Cow position:chr5:18702944-18703429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-487
               
               
               Cow position:chr5:32088285-32088776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-488
               
               
               Cow position:chr5:19969549-19970037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 100

               
               
               Conread position:1-489
               
               
               Cow position:chr5:1338429-1338927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-489
               
               
               Cow position:chr5:3500637-3501134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 132

               
               
               Conread position:1-489
               
               
               Cow position:chr5:3544790-3544302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 158

               
               
               Conread position:1-489
               
               
               Cow position:chr5:3789718-3789222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr5:4962892-4963386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 140

               
               
               Conread position:1-489
               
               
               Cow position:chr5:5715593-5716081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr5:5924488-5924975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:1-489
               
               
               Cow position:chr5:6571760-6572243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr5:10922340-10921839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr5:12134088-12133588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr5:18250542-18250047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr5:18491907-18491400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr5:18557923-18558410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr5:19978418-19978920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 161

               
               
               Conread position:1-489
               
               
               Cow position:chr5:21188426-21187928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 108

               
               
               Conread position:1-489
               
               
               Cow position:chr5:21189712-21189215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 107

               
               
               Conread position:1-489
               
               
               Cow position:chr5:24087555-24088058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr5:24102145-24101644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr5:24299508-24299007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr5:25920300-25920780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 140

               
               
               Conread position:1-489
               
               
               Cow position:chr5:27549019-27549498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr5:29742063-29742563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 181

               
               
               Conread position:1-489
               
               
               Cow position:chr5:30582820-30582320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr5:32697314-32697806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:343
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):266, 17

               
               
               Conread position:1-489
               
               
               Cow position:chr5:32754963-32755450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 47

               
               
               Conread position:1-489
               
               
               Cow position:chr5:32964565-32965071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 105

               
               
               Conread position:1-489
               
               
               Cow position:chr5:34300363-34299886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 53

               
               
               Conread position:1-489
               
               
               Cow position:chr5:34669600-34670094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 99

               
               
               Conread position:1-489
               
               
               Cow position:chr5:38269039-38268522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:334
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:1-489
               
               
               Cow position:chr5:39936597-39936080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 163

               
               
               Conread position:1-489
               
               
               Cow position:chr5:40928531-40929025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 100

               
               
               Conread position:1-489
               
               
               Cow position:chr5:42744280-42743787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 111

               
               
               Conread position:1-489
               
               
               Cow position:chr5:46672102-46671604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 75

               
               
               Conread position:1-489
               
               
               Cow position:chr5:48804975-48805457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr5:49522196-49521698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 130

               
               
               Conread position:1-489
               
               
               Cow position:chr5:53835166-53834648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 213

               
               
               Conread position:1-489
               
               
               Cow position:chr5:54337394-54336899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-489
               
               
               Cow position:chr5:55631559-55631058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr5:56442752-56442253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr5:57935625-57936128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 66

               
               
               Conread position:1-489
               
               
               Cow position:chr5:58004715-58004230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 32

               
               
               Conread position:1-489
               
               
               Cow position:chr5:58770377-58770876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr5:62159427-62159930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr5:62436614-62436117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr5:63312029-63312523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 154

               
               
               Conread position:1-489
               
               
               Cow position:chr5:64778511-64779008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 86

               
               
               Conread position:1-489
               
               
               Cow position:chr5:72857371-72856868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 165

               
               
               Conread position:1-489
               
               
               Cow position:chr5:73485393-73485905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 128

               
               
               Conread position:1-489
               
               
               Cow position:chr5:76098536-76099036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 159

               
               
               Conread position:2-418
               
               
               Cow position:chr5:50064028-50063610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 142

               
               
               Conread position:4-304
               
               
               Cow position:chr5:7192912-7192614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 73

               
               
               Conread position:4-427
               
               
               Cow position:chr5:7498493-7498929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-484
               
               
               Cow position:chr5:52829295-52829785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-487
               
               
               Cow position:chr5:7140607-7141104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 82

               
               
               Conread position:4-489
               
               
               Cow position:chr5:14636087-14636584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-489
               
               
               Cow position:chr5:31634917-31634432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:4-489
               
               
               Cow position:chr5:49116860-49117357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 5

               
               
               Conread position:5-326
               
               
               Cow position:chr5:12872943-12872619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):45, 22

               
               
               Conread position:5-429
               
               
               Cow position:chr5:55088358-55087907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 155

               
               
               Conread position:6-487
               
               
               Cow position:chr5:27179124-27178645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 63

               
               
               Conread position:6-489
               
               
               Cow position:chr5:6151342-6151838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 154

               
               
               Conread position:8-256
               
               
               Cow position:chr5:27614966-27614719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):36, 155

               
               
               Conread position:8-295
               
               
               Cow position:chr5:23641533-23641826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):43, 152

               
               
               Conread position:8-322
               
               
               Cow position:chr5:36406634-36406333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:8-324
               
               
               Cow position:chr5:72345354-72345667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 152

               
               
               Conread position:8-396
               
               
               Cow position:chr5:7042716-7042329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:288
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):42, 9

               
               
               Conread position:8-412
               
               
               Cow position:chr5:1344403-1344824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:298
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):41, 154

               
               
               Conread position:8-466
               
               
               Cow position:chr5:41603763-41603298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 28

               
               
               Conread position:8-479
               
               
               Cow position:chr5:7553246-7552780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 126

               
               
               Conread position:8-480
               
               
               Cow position:chr5:6181047-6180539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 284

               
               
               Conread position:8-483
               
               
               Cow position:chr5:48408970-48409443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 126

               
               
               Conread position:8-489
               
               
               Cow position:chr5:27691470-27690983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 154

               
               
               Conread position:8-489
               
               
               Cow position:chr5:41228561-41229053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 67

               
               
               Conread position:8-489
               
               
               Cow position:chr5:59771535-59771041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:328
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):42, 66

               
               
               Conread position:9-290
               
               
               Cow position:chr5:53866517-53866239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 118

               
               
               Conread position:9-321
               
               
               Cow position:chr5:47704672-47704977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:9-448
               
               
               Cow position:chr5:1105397-1105837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 39

               
               
               Conread position:9-487
               
               
               Cow position:chr5:6032471-6031985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:9-487
               
               
               Cow position:chr5:45705496-45705017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 63

               
               
               Conread position:9-489
               
               
               Cow position:chr5:31560728-31560238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:347
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):40, 125

               
               
               Conread position:9-489
               
               
               Cow position:chr5:41392209-41391723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:9-489
               
               
               Cow position:chr5:48225101-48225584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 142

               
               
               Conread position:9-489
               
               
               Cow position:chr5:68593907-68593425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:10-268
               
               
               Cow position:chr5:70249618-70249360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):39, 126

               
               
               Conread position:10-489
               
               
               Cow position:chr5:23753884-23754355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:329
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):53, 43

               
               
               Conread position:10-489
               
               
               Cow position:chr5:46625791-46626282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 27

               
               
               Conread position:11-450
               
               
               Cow position:chr5:59782291-59782729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 117

               
               
               Conread position:11-483
               
               
               Cow position:chr5:69520092-69519597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 148

               
               
               Conread position:11-485
               
               
               Cow position:chr5:14551115-14551603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 150

               
               
               Conread position:13-432
               
               
               Cow position:chr5:15362520-15362095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 147

               
               
               Conread position:16-489
               
               
               Cow position:chr5:10261788-10262281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 118

               
               
               Conread position:23-302
               
               
               Cow position:chr5:28928315-28928591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 136

               
               
               Conread position:24-470
               
               
               Cow position:chr5:29559060-29558610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 51

               
               
               Conread position:24-483
               
               
               Cow position:chr5:31917071-31916624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 63

               
               
               Conread position:24-487
               
               
               Cow position:chr5:4348543-4348992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 71

               
               
               Conread position:46-320
               
               
               Cow position:chr5:17425704-17425970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 109

               
               
               Conread position:49-466
               
               
               Cow position:chr5:29122590-29122992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 69

               
               
               Conread position:49-482
               
               
               Cow position:chr5:3695773-3695354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:280
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):37, 31

               
               
               Conread position:52-477
               
               
               Cow position:chr5:32164499-32164919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:52-489
               
               
               Cow position:chr5:21184895-21185338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:306
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):34, 57

               
               
               Conread position:53-292
               
               
               Cow position:chr5:6129863-6129634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):33, 102

               
               
               Conread position:53-344
               
               
               Cow position:chr5:40827945-40828225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):285, 28

               
               
               Conread position:54-488
               
               
               Cow position:chr5:50900057-50899629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 27

               
               
               Conread position:55-322
               
               
               Cow position:chr5:65593331-65593073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):10, 101

               
               
               Conread position:57-481
               
               
               Cow position:chr5:4166058-4165633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 50

               
               
               Conread position:63-489
               
               
               Cow position:chr5:42676663-42676255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 88

               
               
               Conread position:64-488
               
               
               Cow position:chr5:23845127-23845545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 91

               
               
               Conread position:67-488
               
               
               Cow position:chr5:8178558-8178134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 88

               
               
               Conread position:72-222
               
               
               Cow position:chr5:9090886-9091030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:72-489
               
               
               Cow position:chr5:28946991-28947410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 44

               
               
               Conread position:72-489
               
               
               Cow position:chr5:38738445-38738023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 85

               
               
               Conread position:73-483
               
               
               Cow position:chr5:54125483-54125100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:278
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):15, 28

               
               
               Conread position:73-489
               
               
               Cow position:chr5:58461278-58461703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 82

               
               
               Conread position:74-365
               
               
               Cow position:chr5:1780173-1780448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):12, 81

               
               
               Conread position:74-489
               
               
               Cow position:chr5:37735792-37735370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 81

               
               
               Conread position:78-489
               
               
               Cow position:chr5:35446226-35446622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 68

               
               
               Conread position:79-489
               
               
               Cow position:chr5:51684211-51684627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 5

               
               
               Conread position:83-489
               
               
               Cow position:chr5:7396649-7396242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 70

               
               
               Conread position:83-489
               
               
               Cow position:chr5:46734873-46735282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 37

               
               
               Conread position:84-489
               
               
               Cow position:chr5:12921801-12921392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 69

               
               
               Conread position:84-489
               
               
               Cow position:chr5:18883211-18883613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):209, 54

               
               
               Conread position:84-489
               
               
               Cow position:chr5:67654730-67654320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 29

               
               
               Conread position:85-266
               
               
               Cow position:chr5:33064551-33064719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:85-382
               
               
               Cow position:chr5:6219349-6219046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):210, 13

               
               
               Conread position:86-489
               
               
               Cow position:chr5:75755982-75755579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 67

               
               
               Conread position:89-489
               
               
               Cow position:chr5:47855226-47854829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 64

               
               
               Conread position:100-489
               
               
               Cow position:chr5:27195673-27196066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 53

               
               
               Conread position:111-373
               
               
               Cow position:chr5:39749049-39749331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):60, 42

               
               
               Conread position:111-486
               
               
               Cow position:chr5:32810652-32811029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 42

               
               
               Conread position:112-489
               
               
               Cow position:chr5:30294674-30294303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 41

               
               
               Conread position:112-489
               
               
               Cow position:chr5:64844890-64845270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 36

               
               
               Conread position:113-487
               
               
               Cow position:chr5:71456671-71457050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:276
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):165, 6

               
               
               Conread position:120-486
               
               
               Cow position:chr5:22555486-22555133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):124, 10

               
               
               Conread position:125-489
               
               
               Cow position:chr5:4630126-4629762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 9

               
               
               Conread position:140-293
               
               
               Cow position:chr5:12558228-12558374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:160-489
               
               
               Cow position:chr5:31921395-31921056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):11, 83

               
               
               Conread position:163-467
               
               
               Cow position:chr5:24643534-24643854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 141

               
               
               Conread position:180-413
               
               
               Cow position:chr5:28026709-28026469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):117, 22

               
               
               Conread position:180-489
               
               
               Cow position:chr5:47871792-47872112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 90

               
               
               Conread position:182-484
               
               
               Cow position:chr5:17645768-17646086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 88

               
               
               Conread position:182-489
               
               
               Cow position:chr5:48574513-48574825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):146, 84

               
               
               Conread position:184-361
               
               
               Cow position:chr5:32081236-32081410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):159, 82

               
               
               Conread position:188-489
               
               
               Cow position:chr5:26466932-26466633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 78

               
               
               Conread position:201-444
               
               
               Cow position:chr5:60446727-60446472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):106, 69

               
               
               Conread position:206-475
               
               
               Cow position:chr5:8529935-8529663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):122, 55

               
               
               Conread position:209-489
               
               
               Cow position:chr5:17387130-17387423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):86, 61

               
               
               Conread position:210-489
               
               
               Cow position:chr5:33536897-33536611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):93, 52

               
               
               Conread position:211-477
               
               
               Cow position:chr5:6044283-6044007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):82, 55

               
               
               Conread position:246-489
               
               
               Cow position:chr5:29769310-29769053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):24, 123

               
               
               Conread position:251-489
               
               
               Cow position:chr5:2704306-2704568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):70, 24

               
               
               Conread position:314-447
               
               
               Cow position:chr5:69771231-69771097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 45

               
               
               Conread position:314-478
               
               
               Cow position:chr5:70531298-70531459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:314-489
               
               
               Cow position:chr5:31120038-31120212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):72, 26

               
               
               Conread position:314-489
               
               
               Cow position:chr5:47697037-47697212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):61, 44

               
               
               Conread position:321-472
               
               
               Cow position:chr5:72345936-72346086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:321-481
               
               
               Cow position:chr5:25927276-25927436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):65, 36

               
               
               Conread position:321-488
               
               
               Cow position:chr5:50604192-50604355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):65, 49

               
               
               Conread position:322-468
               
               
               Cow position:chr5:40891593-40891738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:322-486
               
               
               Cow position:chr5:23642057-23642215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):45, 19

               
               
               Conread position:338-489
               
               
               Cow position:chr5:37608452-37608301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:1-243
               
               
               Cow position:chr6:1175305-1175534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):84, 26

               
               
               Conread position:1-268
               
               
               Cow position:chr6:24988675-24988408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):20, 100

               
               
               Conread position:1-277
               
               
               Cow position:chr6:366700-366410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-282
               
               
               Cow position:chr6:24125772-24126049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):49, 90

               
               
               Conread position:1-293
               
               
               Cow position:chr6:41410235-41409944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-299
               
               
               Cow position:chr6:29085878-29085578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):46, 160

               
               
               Conread position:1-304
               
               
               Cow position:chr6:47977565-47977265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 124

               
               
               Conread position:1-306
               
               
               Cow position:chr6:3445180-3445483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):49, 122

               
               
               Conread position:1-306
               
               
               Cow position:chr6:6200963-6200661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-319
               
               
               Cow position:chr6:8535165-8535480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 145

               
               
               Conread position:1-320
               
               
               Cow position:chr6:56842656-56842339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 44

               
               
               Conread position:1-322
               
               
               Cow position:chr6:1887165-1887480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 116

               
               
               Conread position:1-322
               
               
               Cow position:chr6:47540008-47539695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 30

               
               
               Conread position:1-376
               
               
               Cow position:chr6:58036917-58036529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 159

               
               
               Conread position:1-378
               
               
               Cow position:chr6:62333116-62333504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 122

               
               
               Conread position:1-379
               
               
               Cow position:chr6:539769-539393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 122

               
               
               Conread position:1-379
               
               
               Cow position:chr6:43789734-43790124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 154

               
               
               Conread position:1-413
               
               
               Cow position:chr6:53461537-53461970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 140

               
               
               Conread position:1-459
               
               
               Cow position:chr6:9322626-9322166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 27

               
               
               Conread position:1-460
               
               
               Cow position:chr6:45617945-45618431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:322
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):49, 124

               
               
               Conread position:1-473
               
               
               Cow position:chr6:12352474-12351992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 155

               
               
               Conread position:1-474
               
               
               Cow position:chr6:27887556-27887062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 72

               
               
               Conread position:1-478
               
               
               Cow position:chr6:51674400-51673918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:1-484
               
               
               Cow position:chr6:3928768-3928280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-484
               
               
               Cow position:chr6:11721582-11722070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-485
               
               
               Cow position:chr6:58031405-58030914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 92

               
               
               Conread position:1-486
               
               
               Cow position:chr6:40251169-40251661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 34

               
               
               Conread position:1-487
               
               
               Cow position:chr6:10695348-10694857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 52

               
               
               Conread position:1-487
               
               
               Cow position:chr6:65909959-65909459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-488
               
               
               Cow position:chr6:11288834-11289332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 158

               
               
               Conread position:1-488
               
               
               Cow position:chr6:32420574-32420084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr6:223865-224371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 155

               
               
               Conread position:1-489
               
               
               Cow position:chr6:327729-328230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr6:479180-478683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr6:706629-706131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 156

               
               
               Conread position:1-489
               
               
               Cow position:chr6:4389346-4388873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr6:5946141-5946642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr6:6182093-6182575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 119

               
               
               Conread position:1-489
               
               
               Cow position:chr6:6471285-6471800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 282

               
               
               Conread position:1-489
               
               
               Cow position:chr6:6613925-6613449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 164

               
               
               Conread position:1-489
               
               
               Cow position:chr6:9839495-9840002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 158

               
               
               Conread position:1-489
               
               
               Cow position:chr6:15275606-15276107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr6:15783355-15783846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 154

               
               
               Conread position:1-489
               
               
               Cow position:chr6:16593582-16593093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr6:16625425-16624909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr6:19719201-19718718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 145

               
               
               Conread position:1-489
               
               
               Cow position:chr6:20451592-20451093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 105

               
               
               Conread position:1-489
               
               
               Cow position:chr6:21832027-21832527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 134

               
               
               Conread position:1-489
               
               
               Cow position:chr6:24242920-24242422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 126

               
               
               Conread position:1-489
               
               
               Cow position:chr6:25790104-25790566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):385, 29

               
               
               Conread position:1-489
               
               
               Cow position:chr6:33301303-33300798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr6:33896022-33896507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 128

               
               
               Conread position:1-489
               
               
               Cow position:chr6:34030890-34030414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 24

               
               
               Conread position:1-489
               
               
               Cow position:chr6:34494306-34493808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 165

               
               
               Conread position:1-489
               
               
               Cow position:chr6:34503890-34504388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 165

               
               
               Conread position:1-489
               
               
               Cow position:chr6:34843057-34843580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 291

               
               
               Conread position:1-489
               
               
               Cow position:chr6:35873101-35873596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 134

               
               
               Conread position:1-489
               
               
               Cow position:chr6:36531909-36531406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr6:39137125-39136636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-489
               
               
               Cow position:chr6:39330898-39331398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr6:39998844-39999324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 49

               
               
               Conread position:1-489
               
               
               Cow position:chr6:44017194-44017695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 161

               
               
               Conread position:1-489
               
               
               Cow position:chr6:47039577-47040076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr6:50114332-50113817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 224

               
               
               Conread position:1-489
               
               
               Cow position:chr6:50120299-50120793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 144

               
               
               Conread position:1-489
               
               
               Cow position:chr6:50571825-50571324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr6:51150576-51150075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr6:51733715-51733215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr6:52248899-52249375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:341
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):191, 64

               
               
               Conread position:1-489
               
               
               Cow position:chr6:53672976-53672469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 163

               
               
               Conread position:1-489
               
               
               Cow position:chr6:55538641-55539138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:1-489
               
               
               Cow position:chr6:55903723-55903222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr6:57521809-57521308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr6:59596889-59596376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 162

               
               
               Conread position:4-278
               
               
               Cow position:chr6:6100520-6100796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 156

               
               
               Conread position:4-303
               
               
               Cow position:chr6:40139664-40139951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):46, 80

               
               
               Conread position:4-321
               
               
               Cow position:chr6:58914710-58915019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):39, 75

               
               
               Conread position:4-466
               
               
               Cow position:chr6:7216416-7215951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 69

               
               
               Conread position:4-489
               
               
               Cow position:chr6:9733348-9733837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 241

               
               
               Conread position:4-489
               
               
               Cow position:chr6:35601291-35600812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):324, 64

               
               
               Conread position:5-299
               
               
               Cow position:chr6:60456307-60456002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 148

               
               
               Conread position:5-446
               
               
               Cow position:chr6:5096204-5096630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):323, 28

               
               
               Conread position:5-480
               
               
               Cow position:chr6:51877385-51876907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 155

               
               
               Conread position:5-487
               
               
               Cow position:chr6:29689482-29689000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:5-489
               
               
               Cow position:chr6:2186152-2186649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 156

               
               
               Conread position:5-489
               
               
               Cow position:chr6:53811197-53810723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 11

               
               
               Conread position:8-256
               
               
               Cow position:chr6:3118762-3119020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):42, 141

               
               
               Conread position:8-322
               
               
               Cow position:chr6:49391711-49392025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 152

               
               
               Conread position:8-360
               
               
               Cow position:chr6:56377305-56377656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 64

               
               
               Conread position:8-397
               
               
               Cow position:chr6:6160208-6159832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:276
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):42, 8

               
               
               Conread position:8-455
               
               
               Cow position:chr6:54357904-54358352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 148

               
               
               Conread position:8-487
               
               
               Cow position:chr6:32427750-32427293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:303
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):39, 119

               
               
               Conread position:8-488
               
               
               Cow position:chr6:10236809-10236330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 124

               
               
               Conread position:8-489
               
               
               Cow position:chr6:24623519-24624005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 45

               
               
               Conread position:8-489
               
               
               Cow position:chr6:33949537-33950027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 154

               
               
               Conread position:8-489
               
               
               Cow position:chr6:62961519-62961035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:319
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):78, 93

               
               
               Conread position:10-487
               
               
               Cow position:chr6:40157911-40158381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 151

               
               
               Conread position:10-489
               
               
               Cow position:chr6:48947027-48947522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 8

               
               
               Conread position:11-322
               
               
               Cow position:chr6:2607081-2606781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):40, 114

               
               
               Conread position:11-489
               
               
               Cow position:chr6:43797274-43797768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 126

               
               
               Conread position:12-242
               
               
               Cow position:chr6:63197696-63197926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 148

               
               
               Conread position:13-320
               
               
               Cow position:chr6:2582236-2581921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):37, 107

               
               
               Conread position:14-489
               
               
               Cow position:chr6:60166957-60167425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:329
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:16-447
               
               
               Cow position:chr6:1077636-1078075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:297
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):34, 144

               
               
               Conread position:19-320
               
               
               Cow position:chr6:16699749-16699455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 140

               
               
               Conread position:21-489
               
               
               Cow position:chr6:4274659-4274203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 139

               
               
               Conread position:22-489
               
               
               Cow position:chr6:41677536-41677067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 23

               
               
               Conread position:23-411
               
               
               Cow position:chr6:24583797-24584186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:282
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):63, 108

               
               
               Conread position:23-489
               
               
               Cow position:chr6:57857382-57856903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 137

               
               
               Conread position:24-420
               
               
               Cow position:chr6:50527122-50526713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 128

               
               
               Conread position:24-489
               
               
               Cow position:chr6:10681594-10681129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 138

               
               
               Conread position:46-351
               
               
               Cow position:chr6:3982486-3982181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):37, 109

               
               
               Conread position:49-291
               
               
               Cow position:chr6:54491357-54491592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):38, 105

               
               
               Conread position:49-346
               
               
               Cow position:chr6:7175079-7175362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):37, 71

               
               
               Conread position:50-382
               
               
               Cow position:chr6:25408124-25408448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:56-487
               
               
               Cow position:chr6:28102297-28102731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 101

               
               
               Conread position:58-487
               
               
               Cow position:chr6:8633767-8634169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:301
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):28, 49

               
               
               Conread position:64-322
               
               
               Cow position:chr6:48872761-48873008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):22, 65

               
               
               Conread position:72-302
               
               
               Cow position:chr6:39997527-39997751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:72-322
               
               
               Cow position:chr6:67213932-67213692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:72-487
               
               
               Cow position:chr6:56926291-56925868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 88

               
               
               Conread position:72-489
               
               
               Cow position:chr6:11638650-11639066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:78-489
               
               
               Cow position:chr6:17149629-17150041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 21

               
               
               Conread position:84-441
               
               
               Cow position:chr6:6601366-6601714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):254, 69

               
               
               Conread position:85-293
               
               
               Cow position:chr6:917597-917401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:85-489
               
               
               Cow position:chr6:60332888-60332476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 68

               
               
               Conread position:87-489
               
               
               Cow position:chr6:16766278-16766707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 163

               
               
               Conread position:89-489
               
               
               Cow position:chr6:55593609-55593203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 64

               
               
               Conread position:94-316
               
               
               Cow position:chr6:25782880-25783092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:94-489
               
               
               Cow position:chr6:32018570-32018979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):192, 52

               
               
               Conread position:112-475
               
               
               Cow position:chr6:1498717-1498345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 43

               
               
               Conread position:112-487
               
               
               Cow position:chr6:7105014-7105393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 41

               
               
               Conread position:116-487
               
               
               Cow position:chr6:1537217-1536840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 37

               
               
               Conread position:124-489
               
               
               Cow position:chr6:2618061-2618433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 29

               
               
               Conread position:131-489
               
               
               Cow position:chr6:10612322-10611960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:270
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):190, 22

               
               
               Conread position:138-488
               
               
               Cow position:chr6:4903511-4903862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 15

               
               
               Conread position:155-446
               
               
               Cow position:chr6:65941533-65941832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):111, 15

               
               
               Conread position:161-455
               
               
               Cow position:chr6:50801175-50801472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):118, 19

               
               
               Conread position:163-489
               
               
               Cow position:chr6:52557177-52557503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:245
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):11, 50

               
               
               Conread position:180-489
               
               
               Cow position:chr6:47149512-47149837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):86, 195

               
               
               Conread position:182-489
               
               
               Cow position:chr6:3574239-3573926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):146, 81

               
               
               Conread position:183-489
               
               
               Cow position:chr6:16703293-16703610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 83

               
               
               Conread position:186-489
               
               
               Cow position:chr6:12535163-12534854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):141, 63

               
               
               Conread position:190-318
               
               
               Cow position:chr6:59603377-59603503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:195-484
               
               
               Cow position:chr6:17556233-17556532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 75

               
               
               Conread position:198-489
               
               
               Cow position:chr6:13314593-13314896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):37, 30

               
               
               Conread position:201-441
               
               
               Cow position:chr6:1109442-1109188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):92, 65

               
               
               Conread position:201-487
               
               
               Cow position:chr6:529459-529754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):107, 69

               
               
               Conread position:206-489
               
               
               Cow position:chr6:15924166-15924462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):87, 60

               
               
               Conread position:207-489
               
               
               Cow position:chr6:6944519-6944808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 90

               
               
               Conread position:210-489
               
               
               Cow position:chr6:44098130-44097840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):85, 60

               
               
               Conread position:223-487
               
               
               Cow position:chr6:49761875-49761605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:234-489
               
               
               Cow position:chr6:25179784-25180049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):94, 36

               
               
               Conread position:266-489
               
               
               Cow position:chr6:12099874-12099638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):62, 31

               
               
               Conread position:314-489
               
               
               Cow position:chr6:50485476-50485651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:321-489
               
               
               Cow position:chr6:11353872-11354045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):70, 96

               
               
               Conread position:321-489
               
               
               Cow position:chr6:18970141-18970302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):70, 23

               
               
               Conread position:323-489
               
               
               Cow position:chr6:20350790-20350956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):63, 34

               
               
               Conread position:325-489
               
               
               Cow position:chr6:42616392-42616230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:369-487
               
               
               Cow position:chr6:2581655-2581536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:1-228
               
               
               Cow position:chr7:1599263-1599485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):49, 134

               
               
               Conread position:1-243
               
               
               Cow position:chr7:19923970-19924195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):78, 63

               
               
               Conread position:1-247
               
               
               Cow position:chr7:18544880-18545123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):48, 90

               
               
               Conread position:1-257
               
               
               Cow position:chr7:24767746-24768001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-257
               
               
               Cow position:chr7:25103700-25103447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):86, 52

               
               
               Conread position:1-268
               
               
               Cow position:chr7:48437514-48437776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:1-280
               
               
               Cow position:chr7:37454774-37454498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 126

               
               
               Conread position:1-288
               
               
               Cow position:chr7:64573622-64573887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:1-299
               
               
               Cow position:chr7:20828140-20828446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-302
               
               
               Cow position:chr7:50854-51153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):54, 8

               
               
               Conread position:1-305
               
               
               Cow position:chr7:19456877-19457179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-307
               
               
               Cow position:chr7:29509459-29509163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 37

               
               
               Conread position:1-309
               
               
               Cow position:chr7:68938703-68938409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):41, 112

               
               
               Conread position:1-320
               
               
               Cow position:chr7:23229009-23228697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 162

               
               
               Conread position:1-322
               
               
               Cow position:chr7:35111059-35110740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr7:49750625-49750305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-322
               
               
               Cow position:chr7:55289857-55290171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:1-325
               
               
               Cow position:chr7:66012325-66012001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-326
               
               
               Cow position:chr7:466855-467174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 144

               
               
               Conread position:1-326
               
               
               Cow position:chr7:30115236-30115552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:1-357
               
               
               Cow position:chr7:44697367-44697007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 161

               
               
               Conread position:1-413
               
               
               Cow position:chr7:4452088-4451666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 152

               
               
               Conread position:1-430
               
               
               Cow position:chr7:32283402-32282974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 126

               
               
               Conread position:1-432
               
               
               Cow position:chr7:47045945-47045512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-436
               
               
               Cow position:chr7:27473574-27474012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 136

               
               
               Conread position:1-460
               
               
               Cow position:chr7:40404991-40404514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 158

               
               
               Conread position:1-461
               
               
               Cow position:chr7:51194415-51193943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 76

               
               
               Conread position:1-461
               
               
               Cow position:chr7:67432573-67432099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 141

               
               
               Conread position:1-466
               
               
               Cow position:chr7:60757484-60757963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 171

               
               
               Conread position:1-477
               
               
               Cow position:chr7:49069914-49070396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 150

               
               
               Conread position:1-483
               
               
               Cow position:chr7:24797657-24798152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 120

               
               
               Conread position:1-483
               
               
               Cow position:chr7:26838142-26837650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 163

               
               
               Conread position:1-484
               
               
               Cow position:chr7:13854918-13854449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):327, 86

               
               
               Conread position:1-484
               
               
               Cow position:chr7:57517360-57516880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 13

               
               
               Conread position:1-486
               
               
               Cow position:chr7:5404064-5404549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 14

               
               
               Conread position:1-486
               
               
               Cow position:chr7:19096576-19097068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 161

               
               
               Conread position:1-487
               
               
               Cow position:chr7:759132-759633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-487
               
               
               Cow position:chr7:49647841-49647337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 155

               
               
               Conread position:1-487
               
               
               Cow position:chr7:56887287-56887784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-487
               
               
               Cow position:chr7:61772156-61772655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 27

               
               
               Conread position:1-489
               
               
               Cow position:chr7:194190-194679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:1-489
               
               
               Cow position:chr7:1366969-1367470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr7:3159016-3158517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr7:5250451-5250941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 14

               
               
               Conread position:1-489
               
               
               Cow position:chr7:7262239-7261743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr7:8140357-8140858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr7:10070216-10070712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr7:10427700-10428195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr7:18499280-18499771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:1-489
               
               
               Cow position:chr7:19463128-19463623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 133

               
               
               Conread position:1-489
               
               
               Cow position:chr7:20779626-20779128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 154

               
               
               Conread position:1-489
               
               
               Cow position:chr7:21123945-21124445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr7:21148157-21147660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 90

               
               
               Conread position:1-489
               
               
               Cow position:chr7:21231296-21231792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr7:23457289-23457788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-489
               
               
               Cow position:chr7:24873566-24874074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 165

               
               
               Conread position:1-489
               
               
               Cow position:chr7:27394849-27394354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr7:27509109-27508607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr7:27790997-27790521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 108

               
               
               Conread position:1-489
               
               
               Cow position:chr7:29011118-29011598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 163

               
               
               Conread position:1-489
               
               
               Cow position:chr7:29363282-29363766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:1-489
               
               
               Cow position:chr7:30172531-30173015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 89

               
               
               Conread position:1-489
               
               
               Cow position:chr7:34083158-34082653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 99

               
               
               Conread position:1-489
               
               
               Cow position:chr7:34412798-34413310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr7:34489632-34489131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr7:34568648-34568183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 126

               
               
               Conread position:1-489
               
               
               Cow position:chr7:37507031-37507529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr7:39795584-39795091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:1-489
               
               
               Cow position:chr7:42593822-42594318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr7:42873857-42873369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 157

               
               
               Conread position:1-489
               
               
               Cow position:chr7:43110038-43110542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr7:44597211-44597720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:1-489
               
               
               Cow position:chr7:44621698-44622183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 63

               
               
               Conread position:1-489
               
               
               Cow position:chr7:46749697-46749210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 37

               
               
               Conread position:1-489
               
               
               Cow position:chr7:47190019-47190518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 158

               
               
               Conread position:1-489
               
               
               Cow position:chr7:47909596-47910095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 113

               
               
               Conread position:1-489
               
               
               Cow position:chr7:49743847-49743348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr7:49784008-49784492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 104

               
               
               Conread position:1-489
               
               
               Cow position:chr7:49826618-49827135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 291

               
               
               Conread position:1-489
               
               
               Cow position:chr7:49844555-49845054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 83

               
               
               Conread position:1-489
               
               
               Cow position:chr7:52761803-52762307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 73

               
               
               Conread position:1-489
               
               
               Cow position:chr7:53070846-53070352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 158

               
               
               Conread position:1-489
               
               
               Cow position:chr7:58614295-58613801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr7:58921865-58921377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 155

               
               
               Conread position:1-489
               
               
               Cow position:chr7:59558667-59559157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 156

               
               
               Conread position:1-489
               
               
               Cow position:chr7:59660235-59659720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:1-489
               
               
               Cow position:chr7:59775032-59774536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr7:60726728-60727229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr7:63947395-63947888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr7:64013152-64012650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 156

               
               
               Conread position:1-489
               
               
               Cow position:chr7:64103907-64104403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 85

               
               
               Conread position:1-489
               
               
               Cow position:chr7:64236799-64237308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 14

               
               
               Conread position:1-489
               
               
               Cow position:chr7:64330382-64329898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 135

               
               
               Conread position:1-489
               
               
               Cow position:chr7:65869777-65870272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr7:66223963-66224452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:2-277
               
               
               Cow position:chr7:42495066-42495338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):51, 153

               
               
               Conread position:4-283
               
               
               Cow position:chr7:18509012-18509283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):44, 129

               
               
               Conread position:4-295
               
               
               Cow position:chr7:45748404-45748692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 155

               
               
               Conread position:4-322
               
               
               Cow position:chr7:10727359-10727672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 156

               
               
               Conread position:4-385
               
               
               Cow position:chr7:42334847-42334457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 24

               
               
               Conread position:4-477
               
               
               Cow position:chr7:30664748-30664260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 160

               
               
               Conread position:4-484
               
               
               Cow position:chr7:27552212-27552697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 102

               
               
               Conread position:4-489
               
               
               Cow position:chr7:16935027-16934528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-489
               
               
               Cow position:chr7:41463764-41463258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 160

               
               
               Conread position:4-489
               
               
               Cow position:chr7:41872622-41873095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 36

               
               
               Conread position:4-489
               
               
               Cow position:chr7:44590365-44590846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 44

               
               
               Conread position:4-489
               
               
               Cow position:chr7:55534197-55534695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-489
               
               
               Cow position:chr7:62732705-62732199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 158

               
               
               Conread position:4-489
               
               
               Cow position:chr7:64406031-64405536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 156

               
               
               Conread position:5-322
               
               
               Cow position:chr7:27980557-27980869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):45, 12

               
               
               Conread position:5-322
               
               
               Cow position:chr7:29280504-29280813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 155

               
               
               Conread position:5-340
               
               
               Cow position:chr7:68529314-68528994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 9

               
               
               Conread position:5-382
               
               
               Cow position:chr7:54478585-54478966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 154

               
               
               Conread position:5-414
               
               
               Cow position:chr7:34425085-34424665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 150

               
               
               Conread position:5-432
               
               
               Cow position:chr7:33810145-33809708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 155

               
               
               Conread position:5-485
               
               
               Cow position:chr7:54785105-54785579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 84

               
               
               Conread position:5-489
               
               
               Cow position:chr7:13805939-13806423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 158

               
               
               Conread position:6-268
               
               
               Cow position:chr7:61652895-61652633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):44, 155

               
               
               Conread position:6-436
               
               
               Cow position:chr7:16845816-16845382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 154

               
               
               Conread position:6-467
               
               
               Cow position:chr7:38060974-38061446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 149

               
               
               Conread position:7-470
               
               
               Cow position:chr7:3027442-3027892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 8

               
               
               Conread position:8-296
               
               
               Cow position:chr7:36745792-36745504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):38, 161

               
               
               Conread position:8-322
               
               
               Cow position:chr7:34668882-34668586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:8-392
               
               
               Cow position:chr7:57209124-57209523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 147

               
               
               Conread position:8-489
               
               
               Cow position:chr7:22879733-22879257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 42

               
               
               Conread position:8-489
               
               
               Cow position:chr7:23130518-23130026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 152

               
               
               Conread position:8-489
               
               
               Cow position:chr7:26196313-26196807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 152

               
               
               Conread position:8-489
               
               
               Cow position:chr7:27713301-27712811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 152

               
               
               Conread position:8-489
               
               
               Cow position:chr7:36128469-36127991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 146

               
               
               Conread position:8-489
               
               
               Cow position:chr7:48019640-48019166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 152

               
               
               Conread position:8-489
               
               
               Cow position:chr7:68867424-68866943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:326
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):40, 153

               
               
               Conread position:9-243
               
               
               Cow position:chr7:6566167-6565932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):37, 151

               
               
               Conread position:9-322
               
               
               Cow position:chr7:63771394-63771083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 151

               
               
               Conread position:9-480
               
               
               Cow position:chr7:24741402-24741880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 82

               
               
               Conread position:9-480
               
               
               Cow position:chr7:63379172-63379642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 98

               
               
               Conread position:9-486
               
               
               Cow position:chr7:536139-536628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 147

               
               
               Conread position:9-489
               
               
               Cow position:chr7:21315600-21315101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 147

               
               
               Conread position:9-489
               
               
               Cow position:chr7:62361006-62360527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 133

               
               
               Conread position:9-489
               
               
               Cow position:chr7:64353688-64353193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 103

               
               
               Conread position:10-301
               
               
               Cow position:chr7:34441875-34442146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:10-322
               
               
               Cow position:chr7:734982-735281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):40, 95

               
               
               Conread position:10-483
               
               
               Cow position:chr7:48638429-48637943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 167

               
               
               Conread position:11-295
               
               
               Cow position:chr7:39451710-39451990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 144

               
               
               Conread position:11-446
               
               
               Cow position:chr7:23554669-23554234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 24

               
               
               Conread position:11-489
               
               
               Cow position:chr7:25444855-25444370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:11-489
               
               
               Cow position:chr7:42839966-42839513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):377, 39

               
               
               Conread position:11-489
               
               
               Cow position:chr7:62756156-62755671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:315
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):38, 144

               
               
               Conread position:13-256
               
               
               Cow position:chr7:54089549-54089791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):37, 145

               
               
               Conread position:13-320
               
               
               Cow position:chr7:42429319-42429017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 76

               
               
               Conread position:13-489
               
               
               Cow position:chr7:44745138-44745626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 124

               
               
               Conread position:15-487
               
               
               Cow position:chr7:28162784-28162302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 55

               
               
               Conread position:18-319
               
               
               Cow position:chr7:52294629-52294324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 166

               
               
               Conread position:21-489
               
               
               Cow position:chr7:10604388-10604873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 139

               
               
               Conread position:22-307
               
               
               Cow position:chr7:19912818-19913102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 138

               
               
               Conread position:22-489
               
               
               Cow position:chr7:38145187-38145649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 107

               
               
               Conread position:23-489
               
               
               Cow position:chr7:35428084-35428549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 88

               
               
               Conread position:30-295
               
               
               Cow position:chr7:50297176-50297436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 19

               
               
               Conread position:32-489
               
               
               Cow position:chr7:33392583-33392106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 130

               
               
               Conread position:48-489
               
               
               Cow position:chr7:48722407-48722858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 92

               
               
               Conread position:49-322
               
               
               Cow position:chr7:68928960-68928699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:49-355
               
               
               Cow position:chr7:21571972-21571674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 106

               
               
               Conread position:49-381
               
               
               Cow position:chr7:22358034-22358369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:249
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):37, 68

               
               
               Conread position:49-489
               
               
               Cow position:chr7:114273-113841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 102

               
               
               Conread position:49-489
               
               
               Cow position:chr7:65496056-65496493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:52-322
               
               
               Cow position:chr7:53381661-53381403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):33, 103

               
               
               Conread position:53-489
               
               
               Cow position:chr7:38400497-38400075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 107

               
               
               Conread position:54-351
               
               
               Cow position:chr7:67498152-67497869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):32, 90

               
               
               Conread position:54-478
               
               
               Cow position:chr7:27569713-27570138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 16

               
               
               Conread position:64-489
               
               
               Cow position:chr7:18871352-18871783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 42

               
               
               Conread position:66-489
               
               
               Cow position:chr7:54482623-54483050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 62

               
               
               Conread position:68-487
               
               
               Cow position:chr7:69065907-69065487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:69-489
               
               
               Cow position:chr7:58335352-58335794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:72-260
               
               
               Cow position:chr7:60550682-60550861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:72-451
               
               
               Cow position:chr7:66750403-66750779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:278
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:72-460
               
               
               Cow position:chr7:46898727-46899123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 85

               
               
               Conread position:72-479
               
               
               Cow position:chr7:39902993-39902580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 76

               
               
               Conread position:72-485
               
               
               Cow position:chr7:63389639-63389221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 34

               
               
               Conread position:72-489
               
               
               Cow position:chr7:41444642-41444254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:285
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):14, 61

               
               
               Conread position:83-278
               
               
               Cow position:chr7:62953226-62953048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 72

               
               
               Conread position:84-322
               
               
               Cow position:chr7:33957402-33957175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:84-484
               
               
               Cow position:chr7:3389147-3388760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 50

               
               
               Conread position:84-489
               
               
               Cow position:chr7:26885072-26884685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 60

               
               
               Conread position:84-489
               
               
               Cow position:chr7:29474064-29473667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 69

               
               
               Conread position:84-489
               
               
               Cow position:chr7:31878104-31877700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 50

               
               
               Conread position:84-489
               
               
               Cow position:chr7:61576499-61576902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 69

               
               
               Conread position:85-403
               
               
               Cow position:chr7:17269850-17270170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):58, 65

               
               
               Conread position:85-489
               
               
               Cow position:chr7:14081564-14081969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 68

               
               
               Conread position:99-489
               
               
               Cow position:chr7:5304365-5304761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 55

               
               
               Conread position:103-326
               
               
               Cow position:chr7:1353869-1354082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:118-489
               
               
               Cow position:chr7:67802930-67802553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 35

               
               
               Conread position:119-489
               
               
               Cow position:chr7:5258582-5258957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 30

               
               
               Conread position:120-489
               
               
               Cow position:chr7:33064740-33065105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 33

               
               
               Conread position:128-489
               
               
               Cow position:chr7:42431220-42430861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 25

               
               
               Conread position:134-301
               
               
               Cow position:chr7:7175343-7175183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:140-487
               
               
               Cow position:chr7:44455492-44455836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):152, 14

               
               
               Conread position:149-479
               
               
               Cow position:chr7:59712822-59712476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:248
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):176, 121

               
               
               Conread position:150-489
               
               
               Cow position:chr7:51675505-51675160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 24

               
               
               Conread position:154-489
               
               
               Cow position:chr7:6432943-6433276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):168, 21

               
               
               Conread position:155-489
               
               
               Cow position:chr7:34973895-34973561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:252
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):150, 41

               
               
               Conread position:155-489
               
               
               Cow position:chr7:60741372-60741715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 18

               
               
               Conread position:156-361
               
               
               Cow position:chr7:21239676-21239876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):77, 17

               
               
               Conread position:163-438
               
               
               Cow position:chr7:61762649-61762363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):145, 10

               
               
               Conread position:163-466
               
               
               Cow position:chr7:41727207-41726886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):12, 113

               
               
               Conread position:165-486
               
               
               Cow position:chr7:68087731-68087410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):217, 194

               
               
               Conread position:177-309
               
               
               Cow position:chr7:39131916-39132045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:177-489
               
               
               Cow position:chr7:35275945-35276245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):161, 89

               
               
               Conread position:178-412
               
               
               Cow position:chr7:1721622-1721858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):102, 87

               
               
               Conread position:178-486
               
               
               Cow position:chr7:65431362-65431683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):53, 97

               
               
               Conread position:183-386
               
               
               Cow position:chr7:48274681-48274896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):140, 82

               
               
               Conread position:187-487
               
               
               Cow position:chr7:33068978-33069281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 22

               
               
               Conread position:189-489
               
               
               Cow position:chr7:19881962-19882267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):113, 81

               
               
               Conread position:197-487
               
               
               Cow position:chr7:48814648-48814345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):107, 74

               
               
               Conread position:199-451
               
               
               Cow position:chr7:1374938-1374688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):150, 61

               
               
               Conread position:199-488
               
               
               Cow position:chr7:1383270-1382983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 61

               
               
               Conread position:205-488
               
               
               Cow position:chr7:51630520-51630227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):99, 61

               
               
               Conread position:207-470
               
               
               Cow position:chr7:6266423-6266157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):116, 59

               
               
               Conread position:208-489
               
               
               Cow position:chr7:32713103-32713390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):120, 58

               
               
               Conread position:212-489
               
               
               Cow position:chr7:51406965-51406681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):112, 58

               
               
               Conread position:217-467
               
               
               Cow position:chr7:39020779-39021034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):84, 53

               
               
               Conread position:314-489
               
               
               Cow position:chr7:2578101-2577927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 19

               
               
               Conread position:321-488
               
               
               Cow position:chr7:3128696-3128530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:338-489
               
               
               Cow position:chr7:27373173-27373322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:341-485
               
               
               Cow position:chr7:57578124-57578267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:386-489
               
               
               Cow position:chr7:37951747-37951849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1-219
               
               
               Cow position:chr8:8971101-8971309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):48, 87

               
               
               Conread position:1-235
               
               
               Cow position:chr8:656218-656452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-241
               
               
               Cow position:chr8:57136064-57135826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):52, 124

               
               
               Conread position:1-246
               
               
               Cow position:chr8:12539148-12539386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 139

               
               
               Conread position:1-267
               
               
               Cow position:chr8:13222430-13222693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):48, 32

               
               
               Conread position:1-283
               
               
               Cow position:chr8:34821438-34821723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 164

               
               
               Conread position:1-293
               
               
               Cow position:chr8:47657005-47657296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-301
               
               
               Cow position:chr8:25627808-25627508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-302
               
               
               Cow position:chr8:54194989-54194707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):85, 47

               
               
               Conread position:1-318
               
               
               Cow position:chr8:11136244-11136539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:1-322
               
               
               Cow position:chr8:580788-581095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):49, 124

               
               
               Conread position:1-322
               
               
               Cow position:chr8:4453369-4453051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):39, 124

               
               
               Conread position:1-322
               
               
               Cow position:chr8:9985061-9984741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):44, 126

               
               
               Conread position:1-322
               
               
               Cow position:chr8:16961893-16962212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 152

               
               
               Conread position:1-322
               
               
               Cow position:chr8:36858682-36859011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 166

               
               
               Conread position:1-322
               
               
               Cow position:chr8:38394351-38394037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-322
               
               
               Cow position:chr8:59657166-59657487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):50, 140

               
               
               Conread position:1-326
               
               
               Cow position:chr8:20570017-20569696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 159

               
               
               Conread position:1-372
               
               
               Cow position:chr8:38054356-38053996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 144

               
               
               Conread position:1-375
               
               
               Cow position:chr8:46655484-46655101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 140

               
               
               Conread position:1-376
               
               
               Cow position:chr8:55715029-55714656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 133

               
               
               Conread position:1-382
               
               
               Cow position:chr8:35291318-35291711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-391
               
               
               Cow position:chr8:29012110-29011709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-397
               
               
               Cow position:chr8:46480404-46480826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-405
               
               
               Cow position:chr8:36332740-36333156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-430
               
               
               Cow position:chr8:9131498-9131934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:309
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):47, 160

               
               
               Conread position:1-448
               
               
               Cow position:chr8:9963144-9963605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:1-475
               
               
               Cow position:chr8:1936219-1935737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 120

               
               
               Conread position:1-475
               
               
               Cow position:chr8:18395188-18394737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 158

               
               
               Conread position:1-483
               
               
               Cow position:chr8:25535037-25534552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-484
               
               
               Cow position:chr8:8224454-8224959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:329
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 182

               
               
               Conread position:1-484
               
               
               Cow position:chr8:60267277-60266797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-486
               
               
               Cow position:chr8:53450955-53450457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-487
               
               
               Cow position:chr8:983173-982672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 126

               
               
               Conread position:1-487
               
               
               Cow position:chr8:33592269-33591770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 133

               
               
               Conread position:1-488
               
               
               Cow position:chr8:14924976-14925476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 163

               
               
               Conread position:1-489
               
               
               Cow position:chr8:1107748-1108224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:336
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):327, 52

               
               
               Conread position:1-489
               
               
               Cow position:chr8:3852986-3853481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 161

               
               
               Conread position:1-489
               
               
               Cow position:chr8:4690307-4689809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-489
               
               
               Cow position:chr8:4727720-4728220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr8:6077075-6077549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 87

               
               
               Conread position:1-489
               
               
               Cow position:chr8:7167872-7167366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 183

               
               
               Conread position:1-489
               
               
               Cow position:chr8:8227498-8227992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 124

               
               
               Conread position:1-489
               
               
               Cow position:chr8:10739666-10740167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr8:14587967-14588463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 110

               
               
               Conread position:1-489
               
               
               Cow position:chr8:17200108-17200604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr8:18567999-18568492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 128

               
               
               Conread position:1-489
               
               
               Cow position:chr8:19194563-19194090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 161

               
               
               Conread position:1-489
               
               
               Cow position:chr8:20672731-20673245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr8:21152409-21152890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 132

               
               
               Conread position:1-489
               
               
               Cow position:chr8:21728647-21728164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr8:22031020-22030523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr8:22376279-22376779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr8:24904756-24904257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:1-489
               
               
               Cow position:chr8:25672198-25671701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:1-489
               
               
               Cow position:chr8:25772734-25773232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr8:26625326-26624822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr8:28230014-28230515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 158

               
               
               Conread position:1-489
               
               
               Cow position:chr8:29918086-29918561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:1-489
               
               
               Cow position:chr8:31253274-31252763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr8:32314721-32315219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr8:33898011-33898510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 91

               
               
               Conread position:1-489
               
               
               Cow position:chr8:35211708-35212192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):324, 14

               
               
               Conread position:1-489
               
               
               Cow position:chr8:35473202-35472711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 43

               
               
               Conread position:1-489
               
               
               Cow position:chr8:35529581-35529088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 94

               
               
               Conread position:1-489
               
               
               Cow position:chr8:38043224-38043721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr8:41650642-41650141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr8:45354598-45355075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr8:45791828-45792320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr8:50283308-50283809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr8:50927195-50927695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr8:50957868-50958375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 157

               
               
               Conread position:1-489
               
               
               Cow position:chr8:51602974-51603476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 164

               
               
               Conread position:1-489
               
               
               Cow position:chr8:53320423-53319933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 8

               
               
               Conread position:1-489
               
               
               Cow position:chr8:53429311-53428801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:1-489
               
               
               Cow position:chr8:59258084-59258592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 137

               
               
               Conread position:1-489
               
               
               Cow position:chr8:60067787-60067287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:2-482
               
               
               Cow position:chr8:54069905-54069431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 129

               
               
               Conread position:3-355
               
               
               Cow position:chr8:45492049-45491695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 24

               
               
               Conread position:4-269
               
               
               Cow position:chr8:33407378-33407653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 159

               
               
               Conread position:4-322
               
               
               Cow position:chr8:21990007-21989692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-322
               
               
               Cow position:chr8:24912140-24912454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 149

               
               
               Conread position:4-322
               
               
               Cow position:chr8:45245930-45246240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 88

               
               
               Conread position:4-374
               
               
               Cow position:chr8:42607796-42608177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 157

               
               
               Conread position:4-453
               
               
               Cow position:chr8:42009866-42009387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 283

               
               
               Conread position:4-489
               
               
               Cow position:chr8:4310268-4309772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 156

               
               
               Conread position:4-489
               
               
               Cow position:chr8:7101462-7101922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:326
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):187, 46

               
               
               Conread position:4-489
               
               
               Cow position:chr8:45141561-45142036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 121

               
               
               Conread position:4-489
               
               
               Cow position:chr8:51446252-51446748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-489
               
               
               Cow position:chr8:51702463-51701972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:5-291
               
               
               Cow position:chr8:12310804-12311086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 156

               
               
               Conread position:5-489
               
               
               Cow position:chr8:1583377-1582883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 155

               
               
               Conread position:5-489
               
               
               Cow position:chr8:3332756-3333254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 156

               
               
               Conread position:5-489
               
               
               Cow position:chr8:26039519-26039024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 110

               
               
               Conread position:6-228
               
               
               Cow position:chr8:18049062-18048839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:181
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):44, 154

               
               
               Conread position:8-251
               
               
               Cow position:chr8:25379292-25379532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):42, 130

               
               
               Conread position:8-305
               
               
               Cow position:chr8:25571181-25570886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):41, 152

               
               
               Conread position:8-322
               
               
               Cow position:chr8:22145403-22145097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):43, 122

               
               
               Conread position:8-322
               
               
               Cow position:chr8:29028613-29028926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):42, 150

               
               
               Conread position:8-322
               
               
               Cow position:chr8:38249045-38249351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):40, 78

               
               
               Conread position:8-365
               
               
               Cow position:chr8:15410930-15410583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):33, 146

               
               
               Conread position:8-431
               
               
               Cow position:chr8:33437134-33436694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 24

               
               
               Conread position:8-489
               
               
               Cow position:chr8:41951070-41950590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 152

               
               
               Conread position:9-302
               
               
               Cow position:chr8:29416896-29417186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):41, 147

               
               
               Conread position:9-317
               
               
               Cow position:chr8:27287530-27287834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 99

               
               
               Conread position:9-322
               
               
               Cow position:chr8:54156576-54156271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):39, 147

               
               
               Conread position:9-431
               
               
               Cow position:chr8:47751245-47751677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 59

               
               
               Conread position:9-460
               
               
               Cow position:chr8:53252248-53252702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 104

               
               
               Conread position:9-476
               
               
               Cow position:chr8:21115911-21116395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:326
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):38, 128

               
               
               Conread position:9-483
               
               
               Cow position:chr8:11768593-11768102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 144

               
               
               Conread position:9-486
               
               
               Cow position:chr8:46799861-46800341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 88

               
               
               Conread position:9-487
               
               
               Cow position:chr8:6747693-6748142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 45

               
               
               Conread position:9-489
               
               
               Cow position:chr8:1999075-1998592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:9-489
               
               
               Cow position:chr8:47995819-47996301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:10-322
               
               
               Cow position:chr8:42457152-42456848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):40, 124

               
               
               Conread position:10-396
               
               
               Cow position:chr8:17315491-17315096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 150

               
               
               Conread position:10-483
               
               
               Cow position:chr8:45130834-45131320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 150

               
               
               Conread position:10-489
               
               
               Cow position:chr8:14933253-14933726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 12

               
               
               Conread position:10-489
               
               
               Cow position:chr8:45151758-45152247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 147

               
               
               Conread position:11-322
               
               
               Cow position:chr8:57055721-57056022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 62

               
               
               Conread position:11-487
               
               
               Cow position:chr8:30418522-30418037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 151

               
               
               Conread position:11-489
               
               
               Cow position:chr8:38573775-38574256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 56

               
               
               Conread position:12-322
               
               
               Cow position:chr8:47678890-47678585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 148

               
               
               Conread position:16-348
               
               
               Cow position:chr8:13737880-13737567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:238
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):68, 34

               
               
               Conread position:16-489
               
               
               Cow position:chr8:29920069-29920545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 134

               
               
               Conread position:23-303
               
               
               Cow position:chr8:50936773-50936493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):28, 104

               
               
               Conread position:24-247
               
               
               Cow position:chr8:30135069-30134848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 138

               
               
               Conread position:24-489
               
               
               Cow position:chr8:2166638-2167116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 137

               
               
               Conread position:24-489
               
               
               Cow position:chr8:61197382-61197862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 138

               
               
               Conread position:26-321
               
               
               Cow position:chr8:3147975-3148268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):22, 134

               
               
               Conread position:36-369
               
               
               Cow position:chr8:21992764-21992443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 17

               
               
               Conread position:37-301
               
               
               Cow position:chr8:46624620-46624880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 30

               
               
               Conread position:46-489
               
               
               Cow position:chr8:18080817-18080374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 76

               
               
               Conread position:49-440
               
               
               Cow position:chr8:21212221-21211838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 106

               
               
               Conread position:49-489
               
               
               Cow position:chr8:2823306-2823748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 106

               
               
               Conread position:49-489
               
               
               Cow position:chr8:11226385-11226840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 101

               
               
               Conread position:50-489
               
               
               Cow position:chr8:27956109-27956552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 134

               
               
               Conread position:52-489
               
               
               Cow position:chr8:1158519-1158962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 69

               
               
               Conread position:52-489
               
               
               Cow position:chr8:5243573-5244033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 230

               
               
               Conread position:52-489
               
               
               Cow position:chr8:18683575-18684021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 103

               
               
               Conread position:54-489
               
               
               Cow position:chr8:56256427-56256005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 36

               
               
               Conread position:55-321
               
               
               Cow position:chr8:6470850-6470592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 63

               
               
               Conread position:55-489
               
               
               Cow position:chr8:20674740-20675166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 40

               
               
               Conread position:58-270
               
               
               Cow position:chr8:39845039-39844838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):28, 60

               
               
               Conread position:64-489
               
               
               Cow position:chr8:11372825-11373241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 91

               
               
               Conread position:67-489
               
               
               Cow position:chr8:28150560-28150975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:295
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):19, 88

               
               
               Conread position:71-468
               
               
               Cow position:chr8:18991468-18991868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 84

               
               
               Conread position:72-489
               
               
               Cow position:chr8:8387368-8386949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 45

               
               
               Conread position:72-489
               
               
               Cow position:chr8:13322346-13322778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 82

               
               
               Conread position:72-489
               
               
               Cow position:chr8:49416077-49415656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 83

               
               
               Conread position:72-489
               
               
               Cow position:chr8:51061308-51061735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:79-405
               
               
               Cow position:chr8:12452900-12452573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):215, 5

               
               
               Conread position:83-488
               
               
               Cow position:chr8:8469099-8468684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 74

               
               
               Conread position:84-409
               
               
               Cow position:chr8:23774715-23774384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:245
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):210, 54

               
               
               Conread position:84-489
               
               
               Cow position:chr8:46106216-46105821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 21

               
               
               Conread position:87-489
               
               
               Cow position:chr8:29030880-29031272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 57

               
               
               Conread position:105-489
               
               
               Cow position:chr8:14302496-14302100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 51

               
               
               Conread position:107-485
               
               
               Cow position:chr8:12057361-12056979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 23

               
               
               Conread position:111-488
               
               
               Cow position:chr8:21789036-21789419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 51

               
               
               Conread position:112-489
               
               
               Cow position:chr8:12806544-12806174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 41

               
               
               Conread position:114-489
               
               
               Cow position:chr8:49600543-49600912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 25

               
               
               Conread position:119-489
               
               
               Cow position:chr8:9688105-9687735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 34

               
               
               Conread position:119-489
               
               
               Cow position:chr8:46057988-46058356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 34

               
               
               Conread position:120-470
               
               
               Cow position:chr8:38710522-38710882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):29, 65

               
               
               Conread position:127-489
               
               
               Cow position:chr8:18402544-18402919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 26

               
               
               Conread position:131-489
               
               
               Cow position:chr8:49220953-49220595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 22

               
               
               Conread position:148-487
               
               
               Cow position:chr8:43902926-43902578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 25

               
               
               Conread position:155-489
               
               
               Cow position:chr8:11593012-11592682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):172, 66

               
               
               Conread position:176-406
               
               
               Cow position:chr8:55358668-55358429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):121, 63

               
               
               Conread position:177-322
               
               
               Cow position:chr8:39987177-39987319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:177-489
               
               
               Cow position:chr8:6330430-6330100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):61, 93

               
               
               Conread position:178-485
               
               
               Cow position:chr8:42427863-42428180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):117, 43

               
               
               Conread position:178-489
               
               
               Cow position:chr8:21118048-21118365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):45, 72

               
               
               Conread position:178-489
               
               
               Cow position:chr8:53004160-53004486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):115, 88

               
               
               Conread position:181-489
               
               
               Cow position:chr8:48514419-48514725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):193, 16

               
               
               Conread position:183-397
               
               
               Cow position:chr8:60744888-60745111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):141, 60

               
               
               Conread position:184-489
               
               
               Cow position:chr8:1597997-1598299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):49, 14

               
               
               Conread position:187-489
               
               
               Cow position:chr8:39165679-39165994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):9, 84

               
               
               Conread position:188-489
               
               
               Cow position:chr8:18207931-18208229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):146, 78

               
               
               Conread position:190-489
               
               
               Cow position:chr8:38596931-38597243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 59

               
               
               Conread position:206-489
               
               
               Cow position:chr8:24231146-24230859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):79, 60

               
               
               Conread position:314-487
               
               
               Cow position:chr8:47889392-47889219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):151, 45

               
               
               Conread position:314-489
               
               
               Cow position:chr8:8398559-8398734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:314-489
               
               
               Cow position:chr8:12311304-12311475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:314-489
               
               
               Cow position:chr8:44703396-44703226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:147
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):74, 44

               
               
               Conread position:321-489
               
               
               Cow position:chr8:4745731-4745891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):69, 36

               
               
               Conread position:321-489
               
               
               Cow position:chr8:27288159-27288323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):63, 36

               
               
               Conread position:321-489
               
               
               Cow position:chr8:55089630-55089474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:327-489
               
               
               Cow position:chr8:49520953-49520791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):58, 32

               
               
               Conread position:364-489
               
               
               Cow position:chr8:7682720-7682845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):26, 54

               
               
               Conread position:364-489
               
               
               Cow position:chr8:45246580-45246707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):107, 52

               
               
               Conread position:1-247
               
               
               Cow position:chr9:20393545-20393297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):48, 7

               
               
               Conread position:1-256
               
               
               Cow position:chr9:21459577-21459317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-278
               
               
               Cow position:chr9:25469609-25469885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):52, 116

               
               
               Conread position:1-286
               
               
               Cow position:chr9:213967-213681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-293
               
               
               Cow position:chr9:44920828-44920534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-305
               
               
               Cow position:chr9:26478140-26478443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-306
               
               
               Cow position:chr9:52753658-52753962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-307
               
               
               Cow position:chr9:9985190-9985507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 187

               
               
               Conread position:1-315
               
               
               Cow position:chr9:17296543-17296856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 160

               
               
               Conread position:1-317
               
               
               Cow position:chr9:47546206-47545899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):55, 103

               
               
               Conread position:1-318
               
               
               Cow position:chr9:31078479-31078161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 154

               
               
               Conread position:1-321
               
               
               Cow position:chr9:12194895-12195211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 107

               
               
               Conread position:1-321
               
               
               Cow position:chr9:33659063-33659374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):49, 68

               
               
               Conread position:1-322
               
               
               Cow position:chr9:4862010-4862336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 161

               
               
               Conread position:1-322
               
               
               Cow position:chr9:28726145-28725844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 8

               
               
               Conread position:1-322
               
               
               Cow position:chr9:31341991-31342312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):47, 26

               
               
               Conread position:1-322
               
               
               Cow position:chr9:35592576-35592895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 159

               
               
               Conread position:1-322
               
               
               Cow position:chr9:64054997-64054690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 31

               
               
               Conread position:1-342
               
               
               Cow position:chr9:9752301-9751977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 47

               
               
               Conread position:1-349
               
               
               Cow position:chr9:29184553-29184212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-352
               
               
               Cow position:chr9:37193871-37194205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:257
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-361
               
               
               Cow position:chr9:27050708-27050347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 126

               
               
               Conread position:1-377
               
               
               Cow position:chr9:18205622-18205250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-420
               
               
               Cow position:chr9:3388265-3388693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-424
               
               
               Cow position:chr9:47882723-47883156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 163

               
               
               Conread position:1-433
               
               
               Cow position:chr9:5533372-5533814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 144

               
               
               Conread position:1-440
               
               
               Cow position:chr9:22755375-22755813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 76

               
               
               Conread position:1-443
               
               
               Cow position:chr9:61739492-61739939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-458
               
               
               Cow position:chr9:23028473-23028936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:1-458
               
               
               Cow position:chr9:40316687-40316229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:1-469
               
               
               Cow position:chr9:9516222-9515755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 126

               
               
               Conread position:1-474
               
               
               Cow position:chr9:24996914-24996451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-476
               
               
               Cow position:chr9:28773703-28774192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 86

               
               
               Conread position:1-482
               
               
               Cow position:chr9:1306787-1307283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 163

               
               
               Conread position:1-484
               
               
               Cow position:chr9:23005034-23005498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 154

               
               
               Conread position:1-484
               
               
               Cow position:chr9:33067931-33068426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 159

               
               
               Conread position:1-487
               
               
               Cow position:chr9:217543-218052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:1-487
               
               
               Cow position:chr9:1990991-1991488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-487
               
               
               Cow position:chr9:64562756-64562275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 138

               
               
               Conread position:1-489
               
               
               Cow position:chr9:771686-772184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 138

               
               
               Conread position:1-489
               
               
               Cow position:chr9:2208110-2208607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 8

               
               
               Conread position:1-489
               
               
               Cow position:chr9:2223210-2222731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:338
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):47, 125

               
               
               Conread position:1-489
               
               
               Cow position:chr9:2857406-2856906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr9:3411337-3411832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 114

               
               
               Conread position:1-489
               
               
               Cow position:chr9:3756285-3756769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 105

               
               
               Conread position:1-489
               
               
               Cow position:chr9:3807155-3806658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 157

               
               
               Conread position:1-489
               
               
               Cow position:chr9:3932549-3933050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:1-489
               
               
               Cow position:chr9:3959639-3960121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 134

               
               
               Conread position:1-489
               
               
               Cow position:chr9:4939931-4940437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr9:5007528-5007035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr9:6764208-6764710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:1-489
               
               
               Cow position:chr9:6979766-6979264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 166

               
               
               Conread position:1-489
               
               
               Cow position:chr9:7058492-7058988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:1-489
               
               
               Cow position:chr9:8951492-8951971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 140

               
               
               Conread position:1-489
               
               
               Cow position:chr9:9016635-9016136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr9:10857594-10857082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 96

               
               
               Conread position:1-489
               
               
               Cow position:chr9:12285144-12285645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 160

               
               
               Conread position:1-489
               
               
               Cow position:chr9:13181472-13180982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr9:15052336-15052827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chr9:19155722-19156230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 165

               
               
               Conread position:1-489
               
               
               Cow position:chr9:20942040-20941534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 165

               
               
               Conread position:1-489
               
               
               Cow position:chr9:20988856-20988361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr9:21412864-21412374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 89

               
               
               Conread position:1-489
               
               
               Cow position:chr9:22656361-22655873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr9:23422158-23421648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 165

               
               
               Conread position:1-489
               
               
               Cow position:chr9:26087448-26087942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 111

               
               
               Conread position:1-489
               
               
               Cow position:chr9:27038676-27038169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr9:27781349-27781850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr9:28025383-28024881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr9:29193011-29193506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 143

               
               
               Conread position:1-489
               
               
               Cow position:chr9:30675637-30675137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr9:31811140-31810639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr9:32972928-32972429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 158

               
               
               Conread position:1-489
               
               
               Cow position:chr9:34059070-34059571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr9:34689007-34688547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:327
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):206, 63

               
               
               Conread position:1-489
               
               
               Cow position:chr9:34901036-34900529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 56

               
               
               Conread position:1-489
               
               
               Cow position:chr9:34918168-34917681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 155

               
               
               Conread position:1-489
               
               
               Cow position:chr9:37158049-37158548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr9:38634342-38633842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 157

               
               
               Conread position:1-489
               
               
               Cow position:chr9:40142797-40143289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 13

               
               
               Conread position:1-489
               
               
               Cow position:chr9:42868309-42868811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr9:47263596-47263099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 83

               
               
               Conread position:1-489
               
               
               Cow position:chr9:51178090-51178607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 193

               
               
               Conread position:1-489
               
               
               Cow position:chr9:52001540-52002049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 99

               
               
               Conread position:1-489
               
               
               Cow position:chr9:54413056-54413547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 29

               
               
               Conread position:1-489
               
               
               Cow position:chr9:54996186-54995702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:1-489
               
               
               Cow position:chr9:54997458-54996935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 291

               
               
               Conread position:1-489
               
               
               Cow position:chr9:59479295-59479786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 27

               
               
               Conread position:1-489
               
               
               Cow position:chr9:59540989-59540511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chr9:62668990-62669493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 159

               
               
               Conread position:2-306
               
               
               Cow position:chr9:19380206-19380505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):47, 155

               
               
               Conread position:2-320
               
               
               Cow position:chr9:10004322-10004633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):43, 119

               
               
               Conread position:4-371
               
               
               Cow position:chr9:25959115-25959488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 138

               
               
               Conread position:4-487
               
               
               Cow position:chr9:43302044-43302537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 156

               
               
               Conread position:4-489
               
               
               Cow position:chr9:6253124-6252630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-489
               
               
               Cow position:chr9:16179144-16178649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-489
               
               
               Cow position:chr9:24917729-24918226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:4-489
               
               
               Cow position:chr9:47006293-47005804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 158

               
               
               Conread position:5-326
               
               
               Cow position:chr9:20900526-20900215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 153

               
               
               Conread position:5-436
               
               
               Cow position:chr9:29106434-29105990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 161

               
               
               Conread position:5-468
               
               
               Cow position:chr9:199268-199729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 155

               
               
               Conread position:5-489
               
               
               Cow position:chr9:30401833-30401344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 129

               
               
               Conread position:5-489
               
               
               Cow position:chr9:46524654-46525144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 48

               
               
               Conread position:6-368
               
               
               Cow position:chr9:11477702-11478074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 154

               
               
               Conread position:7-489
               
               
               Cow position:chr9:42570773-42570276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 154

               
               
               Conread position:8-318
               
               
               Cow position:chr9:9634213-9633907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):40, 98

               
               
               Conread position:8-349
               
               
               Cow position:chr9:11156114-11156450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 74

               
               
               Conread position:8-371
               
               
               Cow position:chr9:43670395-43670035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 123

               
               
               Conread position:8-484
               
               
               Cow position:chr9:56861625-56862098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 147

               
               
               Conread position:8-488
               
               
               Cow position:chr9:23527284-23526820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 118

               
               
               Conread position:8-489
               
               
               Cow position:chr9:11744115-11744625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 259

               
               
               Conread position:8-489
               
               
               Cow position:chr9:18110256-18109764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:9-247
               
               
               Cow position:chr9:64049961-64049712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):41, 236

               
               
               Conread position:9-293
               
               
               Cow position:chr9:2192248-2191970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:9-302
               
               
               Cow position:chr9:10760707-10760428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):77, 44

               
               
               Conread position:9-322
               
               
               Cow position:chr9:825351-825660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 101

               
               
               Conread position:9-325
               
               
               Cow position:chr9:58191917-58191620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 102

               
               
               Conread position:9-404
               
               
               Cow position:chr9:59761172-59760774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:288
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):294, 46

               
               
               Conread position:9-430
               
               
               Cow position:chr9:58674354-58674787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:9-456
               
               
               Cow position:chr9:26577245-26576796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 138

               
               
               Conread position:9-487
               
               
               Cow position:chr9:17634042-17633551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:9-489
               
               
               Cow position:chr9:1640823-1640317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 150

               
               
               Conread position:9-489
               
               
               Cow position:chr9:6365928-6365439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 132

               
               
               Conread position:9-489
               
               
               Cow position:chr9:30281466-30281954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 23

               
               
               Conread position:9-489
               
               
               Cow position:chr9:52407754-52408268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 80

               
               
               Conread position:10-268
               
               
               Cow position:chr9:17580157-17580415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 150

               
               
               Conread position:11-320
               
               
               Cow position:chr9:5030379-5030684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):39, 149

               
               
               Conread position:11-322
               
               
               Cow position:chr9:7844137-7844444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):38, 148

               
               
               Conread position:11-489
               
               
               Cow position:chr9:26555613-26555170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:329
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):283, 39

               
               
               Conread position:11-489
               
               
               Cow position:chr9:29338452-29337967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 71

               
               
               Conread position:12-489
               
               
               Cow position:chr9:34945472-34945952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 99

               
               
               Conread position:15-320
               
               
               Cow position:chr9:2618236-2618538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 145

               
               
               Conread position:16-489
               
               
               Cow position:chr9:30439936-30439460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:335
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):31, 94

               
               
               Conread position:17-489
               
               
               Cow position:chr9:12162143-12161657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 143

               
               
               Conread position:21-322
               
               
               Cow position:chr9:10665447-10665147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):29, 140

               
               
               Conread position:22-322
               
               
               Cow position:chr9:20578301-20578005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 138

               
               
               Conread position:23-489
               
               
               Cow position:chr9:30139073-30139546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 97

               
               
               Conread position:24-356
               
               
               Cow position:chr9:17307347-17307003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 138

               
               
               Conread position:24-489
               
               
               Cow position:chr9:49982037-49981566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 137

               
               
               Conread position:25-413
               
               
               Cow position:chr9:33999771-33999375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 104

               
               
               Conread position:26-489
               
               
               Cow position:chr9:9491413-9491880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 85

               
               
               Conread position:46-443
               
               
               Cow position:chr9:38547047-38547436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:279
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):40, 76

               
               
               Conread position:46-474
               
               
               Cow position:chr9:21461967-21461543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 93

               
               
               Conread position:49-243
               
               
               Cow position:chr9:61023445-61023635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):36, 106

               
               
               Conread position:49-292
               
               
               Cow position:chr9:3597633-3597875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):27, 33

               
               
               Conread position:49-323
               
               
               Cow position:chr9:31115165-31114897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):119, 32

               
               
               Conread position:50-258
               
               
               Cow position:chr9:39971648-39971854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):36, 105

               
               
               Conread position:50-453
               
               
               Cow position:chr9:30737001-30737415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 57

               
               
               Conread position:50-459
               
               
               Cow position:chr9:5524851-5525248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 57

               
               
               Conread position:55-489
               
               
               Cow position:chr9:35068-35489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 26

               
               
               Conread position:56-322
               
               
               Cow position:chr9:20317924-20317668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):30, 73

               
               
               Conread position:64-461
               
               
               Cow position:chr9:59539396-59539002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:290
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):22, 91

               
               
               Conread position:72-322
               
               
               Cow position:chr9:38346671-38346908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:72-484
               
               
               Cow position:chr9:25547656-25548087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 14

               
               
               Conread position:74-445
               
               
               Cow position:chr9:15982186-15981809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 79

               
               
               Conread position:77-489
               
               
               Cow position:chr9:5517657-5517245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 39

               
               
               Conread position:83-320
               
               
               Cow position:chr9:11410672-11410449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:84-489
               
               
               Cow position:chr9:17302507-17302911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 69

               
               
               Conread position:107-488
               
               
               Cow position:chr9:29300581-29300945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:275
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):159, 47

               
               
               Conread position:108-486
               
               
               Cow position:chr9:1850211-1850578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 51

               
               
               Conread position:119-487
               
               
               Cow position:chr9:20409801-20409448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 34

               
               
               Conread position:120-485
               
               
               Cow position:chr9:13220979-13220606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 33

               
               
               Conread position:128-488
               
               
               Cow position:chr9:62763879-62764244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):193, 20

               
               
               Conread position:130-489
               
               
               Cow position:chr9:2173960-2173594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):185, 23

               
               
               Conread position:155-293
               
               
               Cow position:chr9:47996002-47996135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:163-484
               
               
               Cow position:chr9:1259837-1259499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):98, 210

               
               
               Conread position:165-322
               
               
               Cow position:chr9:1856451-1856603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:177-411
               
               
               Cow position:chr9:36622107-36621861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):141, 50

               
               
               Conread position:178-489
               
               
               Cow position:chr9:38679484-38679180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 36

               
               
               Conread position:180-489
               
               
               Cow position:chr9:3222848-3222536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):113, 36

               
               
               Conread position:186-489
               
               
               Cow position:chr9:10678552-10678865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):133, 84

               
               
               Conread position:188-489
               
               
               Cow position:chr9:10671964-10672272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):133, 109

               
               
               Conread position:191-458
               
               
               Cow position:chr9:51160215-51159938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):117, 80

               
               
               Conread position:196-486
               
               
               Cow position:chr9:62443621-62443910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):132, 41

               
               
               Conread position:201-469
               
               
               Cow position:chr9:44821247-44820968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):127, 70

               
               
               Conread position:233-489
               
               
               Cow position:chr9:855324-855059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):59, 15

               
               
               Conread position:256-489
               
               
               Cow position:chr9:43856231-43856476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:294-488
               
               
               Cow position:chr9:825666-825862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):7, 52

               
               
               Conread position:314-485
               
               
               Cow position:chr9:64049506-64049340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):76, 43

               
               
               Conread position:314-489
               
               
               Cow position:chr9:12260128-12260303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:364-489
               
               
               Cow position:chr9:7844610-7844726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:1-228
               
               
               Cow position:chrX:45043028-45042790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):13, 163

               
               
               Conread position:1-280
               
               
               Cow position:chrX:5375829-5375557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 63

               
               
               Conread position:1-284
               
               
               Cow position:chrX:4177290-4177011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-293
               
               
               Cow position:chrX:39386960-39387250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 81

               
               
               Conread position:1-308
               
               
               Cow position:chrX:42010505-42010213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):125, 27

               
               
               Conread position:1-309
               
               
               Cow position:chrX:11083139-11083440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 90

               
               
               Conread position:1-315
               
               
               Cow position:chrX:27997122-27996810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-318
               
               
               Cow position:chrX:2524265-2524576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 69

               
               
               Conread position:1-318
               
               
               Cow position:chrX:30143813-30144127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-321
               
               
               Cow position:chrX:31372934-31372616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 160

               
               
               Conread position:1-322
               
               
               Cow position:chrX:7805847-7805534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 41

               
               
               Conread position:1-322
               
               
               Cow position:chrX:19657968-19657650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 153

               
               
               Conread position:1-322
               
               
               Cow position:chrX:25459167-25459486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 160

               
               
               Conread position:1-322
               
               
               Cow position:chrX:37489197-37488882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 160

               
               
               Conread position:1-322
               
               
               Cow position:chrX:40268947-40268634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-344
               
               
               Cow position:chrX:160899-160563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 157

               
               
               Conread position:1-375
               
               
               Cow position:chrX:14162663-14162277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-375
               
               
               Cow position:chrX:24441768-24442154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-376
               
               
               Cow position:chrX:35388439-35388823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 14

               
               
               Conread position:1-382
               
               
               Cow position:chrX:11950022-11950408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 122

               
               
               Conread position:1-382
               
               
               Cow position:chrX:18898179-18898571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:1-412
               
               
               Cow position:chrX:15114142-15113719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-413
               
               
               Cow position:chrX:6543728-6543313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 14

               
               
               Conread position:1-419
               
               
               Cow position:chrX:35240335-35239912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 12

               
               
               Conread position:1-420
               
               
               Cow position:chrX:23316949-23317370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 95

               
               
               Conread position:1-440
               
               
               Cow position:chrX:6766274-6766715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 84

               
               
               Conread position:1-450
               
               
               Cow position:chrX:22125396-22125846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 75

               
               
               Conread position:1-456
               
               
               Cow position:chrX:21255247-21254782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 160

               
               
               Conread position:1-458
               
               
               Cow position:chrX:11073738-11074182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:1-460
               
               
               Cow position:chrX:44054274-44053815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 88

               
               
               Conread position:1-461
               
               
               Cow position:chrX:37118368-37117907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 81

               
               
               Conread position:1-476
               
               
               Cow position:chrX:37832001-37832466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 159

               
               
               Conread position:1-476
               
               
               Cow position:chrX:40560074-40560552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 126

               
               
               Conread position:1-483
               
               
               Cow position:chrX:18455311-18455794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 128

               
               
               Conread position:1-484
               
               
               Cow position:chrX:22811360-22810864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 99

               
               
               Conread position:1-485
               
               
               Cow position:chrX:26441789-26442276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 158

               
               
               Conread position:1-485
               
               
               Cow position:chrX:41733724-41734209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 32

               
               
               Conread position:1-487
               
               
               Cow position:chrX:6406817-6406328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 78

               
               
               Conread position:1-487
               
               
               Cow position:chrX:9898869-9899364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 161

               
               
               Conread position:1-487
               
               
               Cow position:chrX:24109136-24109630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 151

               
               
               Conread position:1-487
               
               
               Cow position:chrX:39556324-39556815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 81

               
               
               Conread position:1-487
               
               
               Cow position:chrX:42222317-42222797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 132

               
               
               Conread position:1-489
               
               
               Cow position:chrX:671532-672023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 155

               
               
               Conread position:1-489
               
               
               Cow position:chrX:2382938-2382436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 160

               
               
               Conread position:1-489
               
               
               Cow position:chrX:2479156-2479658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chrX:5280382-5280882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chrX:5639466-5639912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chrX:5841764-5841284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:1-489
               
               
               Cow position:chrX:7277404-7276932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 26

               
               
               Conread position:1-489
               
               
               Cow position:chrX:7551332-7551831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:1-489
               
               
               Cow position:chrX:7572851-7572361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:1-489
               
               
               Cow position:chrX:10438467-10438935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 133

               
               
               Conread position:1-489
               
               
               Cow position:chrX:10866395-10866886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 163

               
               
               Conread position:1-489
               
               
               Cow position:chrX:12309915-12310415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 69

               
               
               Conread position:1-489
               
               
               Cow position:chrX:15260148-15260645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chrX:16782751-16782252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chrX:16853919-16854395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:1-489
               
               
               Cow position:chrX:17663447-17663944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 160

               
               
               Conread position:1-489
               
               
               Cow position:chrX:18194161-18193660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chrX:18244453-18243963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 160

               
               
               Conread position:1-489
               
               
               Cow position:chrX:18950266-18950766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 7

               
               
               Conread position:1-489
               
               
               Cow position:chrX:20652879-20652387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:347
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 76

               
               
               Conread position:1-489
               
               
               Cow position:chrX:20801244-20800759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 140

               
               
               Conread position:1-489
               
               
               Cow position:chrX:20954002-20953503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 13

               
               
               Conread position:1-489
               
               
               Cow position:chrX:21226945-21226449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 156

               
               
               Conread position:1-489
               
               
               Cow position:chrX:21592758-21592263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:1-489
               
               
               Cow position:chrX:21686090-21685589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chrX:21833340-21832856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chrX:22870282-22869789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 34

               
               
               Conread position:1-489
               
               
               Cow position:chrX:23038526-23039014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-489
               
               
               Cow position:chrX:23280478-23279997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 157

               
               
               Conread position:1-489
               
               
               Cow position:chrX:23387067-23387563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chrX:23451974-23452477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chrX:24482898-24483392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 160

               
               
               Conread position:1-489
               
               
               Cow position:chrX:24769389-24769886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 21

               
               
               Conread position:1-489
               
               
               Cow position:chrX:25282019-25282523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 162

               
               
               Conread position:1-489
               
               
               Cow position:chrX:26531430-26530943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 63

               
               
               Conread position:1-489
               
               
               Cow position:chrX:27095590-27095107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 153

               
               
               Conread position:1-489
               
               
               Cow position:chrX:27590563-27591053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 133

               
               
               Conread position:1-489
               
               
               Cow position:chrX:27616274-27615784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:1-489
               
               
               Cow position:chrX:27754900-27754398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 159

               
               
               Conread position:1-489
               
               
               Cow position:chrX:28133585-28133070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 119

               
               
               Conread position:1-489
               
               
               Cow position:chrX:28518250-28518750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:1-489
               
               
               Cow position:chrX:28879135-28879611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 158

               
               
               Conread position:1-489
               
               
               Cow position:chrX:29083549-29083037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 173

               
               
               Conread position:1-489
               
               
               Cow position:chrX:29760158-29759660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 154

               
               
               Conread position:1-489
               
               
               Cow position:chrX:30180456-30180954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chrX:30228643-30229142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chrX:30455151-30455646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chrX:31202312-31201811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 160

               
               
               Conread position:1-489
               
               
               Cow position:chrX:31261165-31261663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 157

               
               
               Conread position:1-489
               
               
               Cow position:chrX:31978370-31978870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chrX:32584461-32584960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 158

               
               
               Conread position:1-489
               
               
               Cow position:chrX:34009218-34008745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 99

               
               
               Conread position:1-489
               
               
               Cow position:chrX:34441972-34442458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 158

               
               
               Conread position:1-489
               
               
               Cow position:chrX:34761537-34761036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:1-489
               
               
               Cow position:chrX:38852630-38852133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:1-489
               
               
               Cow position:chrX:39352173-39352640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 112

               
               
               Conread position:1-489
               
               
               Cow position:chrX:41156782-41156282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:3-489
               
               
               Cow position:chrX:24174483-24174980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 104

               
               
               Conread position:4-243
               
               
               Cow position:chrX:11819832-11819593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:188
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):46, 130

               
               
               Conread position:4-250
               
               
               Cow position:chrX:44930074-44929824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):19, 145

               
               
               Conread position:4-291
               
               
               Cow position:chrX:40545154-40545440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 156

               
               
               Conread position:4-293
               
               
               Cow position:chrX:36250396-36250679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 147

               
               
               Conread position:4-306
               
               
               Cow position:chrX:20878294-20878600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 161

               
               
               Conread position:4-322
               
               
               Cow position:chrX:41527044-41527361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 159

               
               
               Conread position:4-344
               
               
               Cow position:chrX:38935894-38935552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 81

               
               
               Conread position:4-345
               
               
               Cow position:chrX:4750904-4751237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-480
               
               
               Cow position:chrX:12179142-12178653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 11

               
               
               Conread position:4-489
               
               
               Cow position:chrX:1616768-1617263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:328
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:4-489
               
               
               Cow position:chrX:30060356-30059857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 156

               
               
               Conread position:4-489
               
               
               Cow position:chrX:44901612-44901114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 167

               
               
               Conread position:5-250
               
               
               Cow position:chrX:45464913-45464671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):44, 84

               
               
               Conread position:5-291
               
               
               Cow position:chrX:37781609-37781886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 82

               
               
               Conread position:5-322
               
               
               Cow position:chrX:16688735-16688421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 155

               
               
               Conread position:5-489
               
               
               Cow position:chrX:10412503-10413005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 9

               
               
               Conread position:5-489
               
               
               Cow position:chrX:11975979-11976475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 160

               
               
               Conread position:5-489
               
               
               Cow position:chrX:13405830-13406316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 43

               
               
               Conread position:5-489
               
               
               Cow position:chrX:21582909-21582413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 134

               
               
               Conread position:5-489
               
               
               Cow position:chrX:26755162-26755669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 106

               
               
               Conread position:5-489
               
               
               Cow position:chrX:29849165-29849653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 152

               
               
               Conread position:5-489
               
               
               Cow position:chrX:38151156-38150659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 156

               
               
               Conread position:5-489
               
               
               Cow position:chrX:47000184-47000683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 107

               
               
               Conread position:6-286
               
               
               Cow position:chrX:40827278-40827552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):44, 154

               
               
               Conread position:7-489
               
               
               Cow position:chrX:44192975-44193466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 153

               
               
               Conread position:8-271
               
               
               Cow position:chrX:38999367-38999106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):45, 152

               
               
               Conread position:8-322
               
               
               Cow position:chrX:21666847-21667150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:8-322
               
               
               Cow position:chrX:33827585-33827886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):254, 44

               
               
               Conread position:8-355
               
               
               Cow position:chrX:34034790-34034441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):40, 153

               
               
               Conread position:8-444
               
               
               Cow position:chrX:10301584-10301146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 15

               
               
               Conread position:8-460
               
               
               Cow position:chrX:4482417-4481966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 152

               
               
               Conread position:8-489
               
               
               Cow position:chrX:11744732-11744240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 133

               
               
               Conread position:8-489
               
               
               Cow position:chrX:15151212-15151694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 151

               
               
               Conread position:8-489
               
               
               Cow position:chrX:30089589-30090072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 146

               
               
               Conread position:9-258
               
               
               Cow position:chrX:38840096-38839845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):37, 132

               
               
               Conread position:9-429
               
               
               Cow position:chrX:45400577-45400988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):256, 72

               
               
               Conread position:9-432
               
               
               Cow position:chrX:19878279-19877845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:301
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):39, 146

               
               
               Conread position:9-466
               
               
               Cow position:chrX:28624297-28624767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 152

               
               
               Conread position:9-483
               
               
               Cow position:chrX:1055928-1056411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 149

               
               
               Conread position:9-489
               
               
               Cow position:chrX:14462772-14462290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 136

               
               
               Conread position:9-489
               
               
               Cow position:chrX:21191333-21190831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:319
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):39, 157

               
               
               Conread position:9-489
               
               
               Cow position:chrX:40693258-40693762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 132

               
               
               Conread position:10-413
               
               
               Cow position:chrX:16020922-16021329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:298
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):38, 148

               
               
               Conread position:10-419
               
               
               Cow position:chrX:40365281-40365706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 150

               
               
               Conread position:10-438
               
               
               Cow position:chrX:19929897-19929457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 151

               
               
               Conread position:10-489
               
               
               Cow position:chrX:16279114-16278626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 153

               
               
               Conread position:10-489
               
               
               Cow position:chrX:34554198-34553728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 78

               
               
               Conread position:11-489
               
               
               Cow position:chrX:1550426-1549935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 149

               
               
               Conread position:11-489
               
               
               Cow position:chrX:35609449-35608964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 149

               
               
               Conread position:18-489
               
               
               Cow position:chrX:35937631-35938095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:340
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):37, 78

               
               
               Conread position:23-487
               
               
               Cow position:chrX:24588290-24588762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 134

               
               
               Conread position:23-487
               
               
               Cow position:chrX:38227863-38228344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 136

               
               
               Conread position:23-489
               
               
               Cow position:chrX:12307308-12307792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 137

               
               
               Conread position:24-295
               
               
               Cow position:chrX:16517684-16517954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):26, 136

               
               
               Conread position:24-484
               
               
               Cow position:chrX:23572370-23572842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 134

               
               
               Conread position:24-489
               
               
               Cow position:chrX:29790373-29790845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 87

               
               
               Conread position:30-322
               
               
               Cow position:chrX:40788576-40788288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 130

               
               
               Conread position:42-489
               
               
               Cow position:chrX:27450634-27451075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 114

               
               
               Conread position:49-300
               
               
               Cow position:chrX:11613927-11613677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):37, 94

               
               
               Conread position:49-424
               
               
               Cow position:chrX:23415277-23415660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 88

               
               
               Conread position:49-484
               
               
               Cow position:chrX:36692252-36691813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 106

               
               
               Conread position:49-489
               
               
               Cow position:chrX:24280321-24279887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 46

               
               
               Conread position:49-489
               
               
               Cow position:chrX:26508640-26508203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 99

               
               
               Conread position:49-489
               
               
               Cow position:chrX:41791294-41791749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 106

               
               
               Conread position:50-278
               
               
               Cow position:chrX:27446092-27445872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:177
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):36, 79

               
               
               Conread position:50-489
               
               
               Cow position:chrX:2008293-2008727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 105

               
               
               Conread position:51-467
               
               
               Cow position:chrX:3649407-3649827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 104

               
               
               Conread position:52-489
               
               
               Cow position:chrX:33803590-33804016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 49

               
               
               Conread position:58-293
               
               
               Cow position:chrX:35409044-35408816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 98

               
               
               Conread position:64-489
               
               
               Cow position:chrX:29700550-29700971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 64

               
               
               Conread position:65-488
               
               
               Cow position:chrX:22538631-22539062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 90

               
               
               Conread position:67-488
               
               
               Cow position:chrX:40070210-40070632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 87

               
               
               Conread position:68-489
               
               
               Cow position:chrX:21389978-21389548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 88

               
               
               Conread position:71-273
               
               
               Cow position:chrX:7571266-7571074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):15, 84

               
               
               Conread position:72-489
               
               
               Cow position:chrX:16325134-16325560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:72-489
               
               
               Cow position:chrX:35024450-35024039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:77-483
               
               
               Cow position:chrX:41304841-41305253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 78

               
               
               Conread position:83-489
               
               
               Cow position:chrX:8400161-8400579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):54, 115

               
               
               Conread position:83-489
               
               
               Cow position:chrX:11990769-11991180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):239, 70

               
               
               Conread position:84-489
               
               
               Cow position:chrX:29915965-29916376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 69

               
               
               Conread position:99-489
               
               
               Cow position:chrX:4407268-4406853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 54

               
               
               Conread position:99-489
               
               
               Cow position:chrX:29099782-29099389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 54

               
               
               Conread position:107-489
               
               
               Cow position:chrX:619901-620291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 46

               
               
               Conread position:111-489
               
               
               Cow position:chrX:29892440-29892054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 42

               
               
               Conread position:114-489
               
               
               Cow position:chrX:25573695-25573323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:271
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):181, 39

               
               
               Conread position:115-489
               
               
               Cow position:chrX:1527604-1527981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):37, 162

               
               
               Conread position:116-438
               
               
               Cow position:chrX:21662385-21662063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):177, 37

               
               
               Conread position:120-489
               
               
               Cow position:chrX:38218329-38217950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):65, 33

               
               
               Conread position:149-401
               
               
               Cow position:chrX:8144563-8144819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 27

               
               
               Conread position:155-483
               
               
               Cow position:chrX:21818168-21818479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):150, 18

               
               
               Conread position:156-489
               
               
               Cow position:chrX:24317139-24316786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:261
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):41, 111

               
               
               Conread position:156-489
               
               
               Cow position:chrX:29288310-29287968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 115

               
               
               Conread position:157-445
               
               
               Cow position:chrX:150783-150494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):151, 23

               
               
               Conread position:176-489
               
               
               Cow position:chrX:27071140-27070817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):128, 56

               
               
               Conread position:180-483
               
               
               Cow position:chrX:34222057-34221734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):143, 86

               
               
               Conread position:181-487
               
               
               Cow position:chrX:34564382-34564086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):203, 38

               
               
               Conread position:181-489
               
               
               Cow position:chrX:22819369-22819048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 85

               
               
               Conread position:182-321
               
               
               Cow position:chrX:32071573-32071712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):133, 119

               
               
               Conread position:183-489
               
               
               Cow position:chrX:45373819-45374137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 83

               
               
               Conread position:184-425
               
               
               Cow position:chrX:20790253-20790506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):134, 20

               
               
               Conread position:185-489
               
               
               Cow position:chrX:33537862-33537554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):100, 80

               
               
               Conread position:192-489
               
               
               Cow position:chrX:3155305-3155611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):107, 74

               
               
               Conread position:195-489
               
               
               Cow position:chrX:20792413-20792109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):100, 75

               
               
               Conread position:201-489
               
               
               Cow position:chrX:3224240-3224525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 51

               
               
               Conread position:204-489
               
               
               Cow position:chrX:26622554-26622838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):152, 66

               
               
               Conread position:205-489
               
               
               Cow position:chrX:6201793-6201503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 6

               
               
               Conread position:212-486
               
               
               Cow position:chrX:43075141-43074856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):126, 9

               
               
               Conread position:214-489
               
               
               Cow position:chrX:41884921-41885207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):94, 48

               
               
               Conread position:223-489
               
               
               Cow position:chrX:6655787-6656048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 52

               
               
               Conread position:314-489
               
               
               Cow position:chrX:21750100-21750272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:314-489
               
               
               Cow position:chrX:27497974-27497801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:314-489
               
               
               Cow position:chrX:30435472-30435648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:321-475
               
               
               Cow position:chrX:28765970-28766124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):63, 36

               
               
               Conread position:322-489
               
               
               Cow position:chrX:24734798-24734634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:325-489
               
               
               Cow position:chrX:9911548-9911387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:327-489
               
               
               Cow position:chrX:33830178-33830013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):36, 0