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Cow genome map

           
Conread name:
           
rpigca0_014818.y1
        

               
Conread position:
               
14-444
               

               
Cow position:
               
chr10:43564575-43565008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
20, 149
               

               
Conread position:
               
21-470
               

               
Cow position:
               
chr10:38844466-38844009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
145, 157
               

               
Conread position:
               
24-475
               

               
Cow position:
               
chr10:8843537-8843085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
184, 23
               

               
Conread position:
               
29-474
               

               
Cow position:
               
chr10:55641316-55640869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
24, 60
               

               
Conread position:
               
30-426
               

               
Cow position:
               
chr10:39265645-39265241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
21, 13
               

               
Conread position:
               
34-471
               

               
Cow position:
               
chr10:1185161-1185602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
113, 45
               

               
Conread position:
               
34-473
               

               
Cow position:
               
chr10:50981035-50980602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
249, 48
               

               
Conread position:
               
35-475
               

               
Cow position:
               
chr10:61498154-61497703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
13, 9
               

               
Conread position:
               
37-472
               

               
Cow position:
               
chr10:33901397-33901830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 161
               

               
Conread position:
               
47-473
               

               
Cow position:
               
chr10:27173729-27174157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
165, 139
               

               
Conread position:
               
107-474
               

               
Cow position:
               
chr10:45685226-45685600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 53
               

               
Conread position:
               
114-473
               

               
Cow position:
               
chr10:4558155-4558518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
218, 36
               

               
Conread position:
               
154-471
               

               
Cow position:
               
chr10:10294226-10293903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
124, 62
               

               
Conread position:
               
156-471
               

               
Cow position:
               
chr10:15867818-15867504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
157, 60
               

               
Conread position:
               
187-474
               

               
Cow position:
               
chr10:51409196-51408908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
108, 48
               

               
Conread position:
               
197-473
               

               
Cow position:
               
chr10:22986003-22986287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
46, 36
               

               
Conread position:
               
14-471
               

               
Cow position:
               
chr11:73512703-73513166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
11, 95
               

               
Conread position:
               
14-474
               

               
Cow position:
               
chr11:62873057-62873515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
272, 202
               

               
Conread position:
               
17-457
               

               
Cow position:
               
chr11:15834473-15834035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
109, 39
               

               
Conread position:
               
53-451
               

               
Cow position:
               
chr11:63161754-63162152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
8, 27
               

               
Conread position:
               
53-474
               

               
Cow position:
               
chr11:53093162-53093571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
233, 75
               

               
Conread position:
               
63-471
               

               
Cow position:
               
chr11:36766109-36765699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 106
               

               
Conread position:
               
64-416
               

               
Cow position:
               
chr11:29622781-29623139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
212, 121
               

               
Conread position:
               
79-475
               

               
Cow position:
               
chr11:74208688-74209086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
161, 72
               

               
Conread position:
               
89-470
               

               
Cow position:
               
chr11:13567002-13567387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
30, 103
               

               
Conread position:
               
93-473
               

               
Cow position:
               
chr11:2643100-2643484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
218, 104
               

               
Conread position:
               
109-475
               

               
Cow position:
               
chr11:81296890-81296520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 21
               

               
Conread position:
               
115-475
               

               
Cow position:
               
chr11:26467868-26467502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
95, 8
               

               
Conread position:
               
134-471
               

               
Cow position:
               
chr11:19717095-19717438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
149, 63
               

               
Conread position:
               
134-474
               

               
Cow position:
               
chr11:53203747-53203398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
39, 47
               

               
Conread position:
               
149-461
               

               
Cow position:
               
chr11:11534526-11534843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
61, 37
               

               
Conread position:
               
194-475
               

               
Cow position:
               
chr11:19795644-19795370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 22
               

               
Conread position:
               
197-474
               

               
Cow position:
               
chr11:12118739-12118455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 148
               

               
Conread position:
               
20-471
               

               
Cow position:
               
chr12:10227684-10227230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
5, 106
               

               
Conread position:
               
25-461
               

               
Cow position:
               
chr12:32285836-32285402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
28, 98
               

               
Conread position:
               
28-331
               

               
Cow position:
               
chr12:30031694-30032000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
257, 89
               

               
Conread position:
               
34-471
               

               
Cow position:
               
chr12:10490986-10490548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
170, 89
               

               
Conread position:
               
63-461
               

               
Cow position:
               
chr12:1503590-1503192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
76, 51
               

               
Conread position:
               
143-471
               

               
Cow position:
               
chr12:28012402-28012743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
14, 37
               

               
Conread position:
               
154-473
               

               
Cow position:
               
chr12:6478628-6478960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
56, 43
               

               
Conread position:
               
184-475
               

               
Cow position:
               
chr12:9385168-9385471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
23, 7
               

               
Conread position:
               
191-459
               

               
Cow position:
               
chr12:15778474-15778212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 72
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr13:58217509-58217939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
33, 10
               

               
Conread position:
               
19-449
               

               
Cow position:
               
chr13:41361045-41361485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
10, 51
               

               
Conread position:
               
20-475
               

               
Cow position:
               
chr13:28550109-28549657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
15, 147
               

               
Conread position:
               
28-474
               

               
Cow position:
               
chr13:11136042-11136496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
82, 155
               

               
Conread position:
               
28-474
               

               
Cow position:
               
chr13:18671728-18672175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
26, 109
               

               
Conread position:
               
34-471
               

               
Cow position:
               
chr13:645644-645205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
134, 91
               

               
Conread position:
               
35-474
               

               
Cow position:
               
chr13:14717065-14716631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
75, 114
               

               
Conread position:
               
36-425
               

               
Cow position:
               
chr13:2950971-2951358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
134, 142
               

               
Conread position:
               
36-471
               

               
Cow position:
               
chr13:44323252-44323689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
174, 87
               

               
Conread position:
               
75-425
               

               
Cow position:
               
chr13:36107195-36106837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
10, 55
               

               
Conread position:
               
135-475
               

               
Cow position:
               
chr13:18530926-18530584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
147, 37
               

               
Conread position:
               
138-468
               

               
Cow position:
               
chr13:57493814-57493477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
140, 16
               

               
Conread position:
               
138-471
               

               
Cow position:
               
chr13:60489914-60489575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
32, 12
               

               
Conread position:
               
139-471
               

               
Cow position:
               
chr13:39912017-39911678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
12, 5
               

               
Conread position:
               
153-471
               

               
Cow position:
               
chr13:11243241-11243565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
155-470
               

               
Cow position:
               
chr13:40831847-40832169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
28, 35
               

               
Conread position:
               
159-474
               

               
Cow position:
               
chr13:39607185-39606873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 33
               

               
Conread position:
               
185-471
               

               
Cow position:
               
chr13:3315193-3314903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
95, 12
               

               
Conread position:
               
20-450
               

               
Cow position:
               
chr14:31965852-31966291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
7, 16
               

               
Conread position:
               
20-474
               

               
Cow position:
               
chr14:27822457-27822908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
15, 77
               

               
Conread position:
               
20-474
               

               
Cow position:
               
chr14:33280924-33281384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
7, 173
               

               
Conread position:
               
24-471
               

               
Cow position:
               
chr14:25682264-25682724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
164, 105
               

               
Conread position:
               
28-474
               

               
Cow position:
               
chr14:43693352-43692900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
55, 30
               

               
Conread position:
               
30-446
               

               
Cow position:
               
chr14:13837141-13836712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 82
               

               
Conread position:
               
31-425
               

               
Cow position:
               
chr14:45512813-45513217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
111, 128
               

               
Conread position:
               
31-470
               

               
Cow position:
               
chr14:27208171-27208619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
18, 57
               

               
Conread position:
               
34-474
               

               
Cow position:
               
chr14:28257254-28256813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
19, 11
               

               
Conread position:
               
34-474
               

               
Cow position:
               
chr14:46554436-46553998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
163, 146
               

               
Conread position:
               
36-471
               

               
Cow position:
               
chr14:38379614-38380051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
169, 94
               

               
Conread position:
               
108-474
               

               
Cow position:
               
chr14:10907122-10907497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
134, 108
               

               
Conread position:
               
131-474
               

               
Cow position:
               
chr14:41962066-41962414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
8, 15
               

               
Conread position:
               
138-471
               

               
Cow position:
               
chr14:21201400-21201067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
141, 9
               

               
Conread position:
               
138-471
               

               
Cow position:
               
chr14:48495720-48495380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
141, 9
               

               
Conread position:
               
139-471
               

               
Cow position:
               
chr14:17761909-17762238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
12, 5
               

               
Conread position:
               
181-475
               

               
Cow position:
               
chr14:7885253-7885559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
27, 261
               

               
Conread position:
               
192-474
               

               
Cow position:
               
chr14:26496336-26496630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
18, 157
               

               
Conread position:
               
20-448
               

               
Cow position:
               
chr15:33740761-33740319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
12, 75
               

               
Conread position:
               
20-474
               

               
Cow position:
               
chr15:14719642-14719189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
7, 160
               

               
Conread position:
               
22-471
               

               
Cow position:
               
chr15:13536628-13537085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
26, 18
               

               
Conread position:
               
28-263
               

               
Cow position:
               
chr15:8003775-8004008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
28-474
               

               
Cow position:
               
chr15:19655621-19655170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 157
               

               
Conread position:
               
28-474
               

               
Cow position:
               
chr15:26933648-26933193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
35, 59
               

               
Conread position:
               
30-474
               

               
Cow position:
               
chr15:29727827-29728274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
16, 53
               

               
Conread position:
               
34-461
               

               
Cow position:
               
chr15:6530463-6530033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
176, 91
               

               
Conread position:
               
34-470
               

               
Cow position:
               
chr15:24968162-24968601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
176, 89
               

               
Conread position:
               
34-471
               

               
Cow position:
               
chr15:33605296-33605739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
176, 35
               

               
Conread position:
               
34-475
               

               
Cow position:
               
chr15:6282571-6282124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
176, 41
               

               
Conread position:
               
47-469
               

               
Cow position:
               
chr15:23529021-23529448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
103, 30
               

               
Conread position:
               
48-474
               

               
Cow position:
               
chr15:48288422-48287987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
160, 69
               

               
Conread position:
               
53-435
               

               
Cow position:
               
chr15:19517608-19517991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
113, 26
               

               
Conread position:
               
54-468
               

               
Cow position:
               
chr15:34102288-34102704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
77, 132
               

               
Conread position:
               
91-471
               

               
Cow position:
               
chr15:30133238-30133612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
79, 26
               

               
Conread position:
               
114-475
               

               
Cow position:
               
chr15:47044798-47044430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
59, 65
               

               
Conread position:
               
134-425
               

               
Cow position:
               
chr15:170304-170592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
218, 13
               

               
Conread position:
               
138-434
               

               
Cow position:
               
chr15:36781835-36781529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 9
               

               
Conread position:
               
216-459
               

               
Cow position:
               
chr15:25133381-25133128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
63, 223
               

               
Conread position:
               
217-469
               

               
Cow position:
               
chr15:6163688-6163948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
56, 128
               

               
Conread position:
               
20-458
               

               
Cow position:
               
chr16:24223598-24224021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
7, 43
               

               
Conread position:
               
24-474
               

               
Cow position:
               
chr16:52391489-52391029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 124
               

               
Conread position:
               
28-211
               

               
Cow position:
               
chr16:27774387-27774570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
157, 89
               

               
Conread position:
               
33-471
               

               
Cow position:
               
chr16:49515538-49515975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
255, 90
               

               
Conread position:
               
34-451
               

               
Cow position:
               
chr16:17142650-17142225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
185, 56
               

               
Conread position:
               
34-461
               

               
Cow position:
               
chr16:25445122-25444692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
134, 100
               

               
Conread position:
               
34-471
               

               
Cow position:
               
chr16:13601368-13601814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
105, 112
               

               
Conread position:
               
35-475
               

               
Cow position:
               
chr16:39646273-39645829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
173, 95
               

               
Conread position:
               
47-474
               

               
Cow position:
               
chr16:11378412-11377991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
57, 32
               

               
Conread position:
               
84-475
               

               
Cow position:
               
chr16:1652523-1652132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
202, 93
               

               
Conread position:
               
107-454
               

               
Cow position:
               
chr16:56180307-56180653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
202, 86
               

               
Conread position:
               
156-471
               

               
Cow position:
               
chr16:7701905-7701582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
51, 30
               

               
Conread position:
               
160-471
               

               
Cow position:
               
chr16:24147765-24147456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
47, 16
               

               
Conread position:
               
186-475
               

               
Cow position:
               
chr16:21453543-21453846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
16, 258
               

               
Conread position:
               
197-434
               

               
Cow position:
               
chr16:6386876-6386625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
20-471
               

               
Cow position:
               
chr17:8039200-8038742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
6, 124
               

               
Conread position:
               
32-471
               

               
Cow position:
               
chr17:38992564-38992118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
16, 103
               

               
Conread position:
               
34-471
               

               
Cow position:
               
chr17:13726067-13725628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
134, 91
               

               
Conread position:
               
79-451
               

               
Cow position:
               
chr17:18851594-18851206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
89, 98
               

               
Conread position:
               
90-473
               

               
Cow position:
               
chr17:7802107-7802496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
188, 27
               

               
Conread position:
               
90-473
               

               
Cow position:
               
chr17:29833149-29833521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
120, 55
               

               
Conread position:
               
131-430
               

               
Cow position:
               
chr17:30413668-30413358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 66
               

               
Conread position:
               
138-425
               

               
Cow position:
               
chr17:24334343-24334052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 9
               

               
Conread position:
               
138-470
               

               
Cow position:
               
chr17:16446775-16447114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
30, 16
               

               
Conread position:
               
289-471
               

               
Cow position:
               
chr17:1312384-1312198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
21, 49
               

               
Conread position:
               
14-474
               

               
Cow position:
               
chr18:7085600-7085133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
21, 31
               

               
Conread position:
               
20-474
               

               
Cow position:
               
chr18:28530404-28530869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
15, 104
               

               
Conread position:
               
28-426
               

               
Cow position:
               
chr18:23044509-23044103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 177
               

               
Conread position:
               
28-462
               

               
Cow position:
               
chr18:28680084-28679653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
20, 16
               

               
Conread position:
               
28-470
               

               
Cow position:
               
chr18:7682616-7683063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
12, 62
               

               
Conread position:
               
28-471
               

               
Cow position:
               
chr18:21940022-21939578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 83
               

               
Conread position:
               
31-465
               

               
Cow position:
               
chr18:32280983-32280546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
64, 92
               

               
Conread position:
               
34-459
               

               
Cow position:
               
chr18:26306298-26305874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
132, 99
               

               
Conread position:
               
34-471
               

               
Cow position:
               
chr18:35012624-35013060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
173, 56
               

               
Conread position:
               
34-474
               

               
Cow position:
               
chr18:30876243-30876688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
134, 143
               

               
Conread position:
               
35-473
               

               
Cow position:
               
chr18:32400517-32400953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
251, 123
               

               
Conread position:
               
42-474
               

               
Cow position:
               
chr18:37200129-37200558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
202, 140
               

               
Conread position:
               
50-471
               

               
Cow position:
               
chr18:51691802-51692231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
139, 79
               

               
Conread position:
               
53-452
               

               
Cow position:
               
chr18:33158531-33158130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
66, 80
               

               
Conread position:
               
138-471
               

               
Cow position:
               
chr18:7076353-7076014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
72, 9
               

               
Conread position:
               
139-430
               

               
Cow position:
               
chr18:19115874-19116179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
11, 78
               

               
Conread position:
               
20-474
               

               
Cow position:
               
chr19:41213496-41213947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 24
               

               
Conread position:
               
24-413
               

               
Cow position:
               
chr19:9293977-9293574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
105, 123
               

               
Conread position:
               
28-470
               

               
Cow position:
               
chr19:28938068-28938520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
20, 177
               

               
Conread position:
               
30-418
               

               
Cow position:
               
chr19:19444566-19444961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
174, 155
               

               
Conread position:
               
30-442
               

               
Cow position:
               
chr19:13066730-13066311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
8, 15
               

               
Conread position:
               
34-468
               

               
Cow position:
               
chr19:19928092-19928532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
48, 74
               

               
Conread position:
               
48-474
               

               
Cow position:
               
chr19:17804906-17804483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
28, 135
               

               
Conread position:
               
62-473
               

               
Cow position:
               
chr19:18719349-18718936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
105, 116
               

               
Conread position:
               
68-474
               

               
Cow position:
               
chr19:34461238-34460843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
14, 119
               

               
Conread position:
               
138-458
               

               
Cow position:
               
chr19:33585932-33586258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
30, 16
               

               
Conread position:
               
138-471
               

               
Cow position:
               
chr19:33932539-33932876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
159-471
               

               
Cow position:
               
chr19:40883616-40883935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
1-474
               

               
Cow position:
               
chr2:15124711-15124254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 185
               

               
Conread position:
               
6-474
               

               
Cow position:
               
chr2:43777574-43778036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
47, 22
               

               
Conread position:
               
14-471
               

               
Cow position:
               
chr2:13860574-13861035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
24, 110
               

               
Conread position:
               
28-255
               

               
Cow position:
               
chr2:45003618-45003840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
20, 15
               

               
Conread position:
               
28-474
               

               
Cow position:
               
chr2:29189478-29189921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 187
               

               
Conread position:
               
34-459
               

               
Cow position:
               
chr2:2180797-2181223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
245, 97
               

               
Conread position:
               
34-471
               

               
Cow position:
               
chr2:15686866-15686424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
173, 89
               

               
Conread position:
               
34-475
               

               
Cow position:
               
chr2:58978574-58978140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
62, 100
               

               
Conread position:
               
35-471
               

               
Cow position:
               
chr2:9911744-9911313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
133, 96
               

               
Conread position:
               
53-474
               

               
Cow position:
               
chr2:21652294-21652717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
37, 83
               

               
Conread position:
               
55-437
               

               
Cow position:
               
chr2:41597267-41597660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
20, 69
               

               
Conread position:
               
90-474
               

               
Cow position:
               
chr2:36192584-36192976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
197, 107
               

               
Conread position:
               
109-471
               

               
Cow position:
               
chr2:39627973-39627601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 22
               

               
Conread position:
               
111-474
               

               
Cow position:
               
chr2:18152300-18152662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
96, 19
               

               
Conread position:
               
112-457
               

               
Cow position:
               
chr2:80588070-80587719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 66
               

               
Conread position:
               
125-474
               

               
Cow position:
               
chr2:4700101-4699748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
161, 63
               

               
Conread position:
               
129-474
               

               
Cow position:
               
chr2:17768032-17768377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
37, 49
               

               
Conread position:
               
134-471
               

               
Cow position:
               
chr2:26879019-26878676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
6, 16
               

               
Conread position:
               
137-474
               

               
Cow position:
               
chr2:44222246-44221904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
95, 10
               

               
Conread position:
               
138-471
               

               
Cow position:
               
chr2:72789639-72789972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
30, 16
               

               
Conread position:
               
148-471
               

               
Cow position:
               
chr2:2590340-2590666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
150-459
               

               
Cow position:
               
chr2:57938764-57938446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
129, 66
               

               
Conread position:
               
20-471
               

               
Cow position:
               
chr20:30384234-30384687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
5, 25
               

               
Conread position:
               
33-457
               

               
Cow position:
               
chr20:3059558-3059991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
116, 36
               

               
Conread position:
               
34-385
               

               
Cow position:
               
chr20:13048660-13049017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
126, 100
               

               
Conread position:
               
36-434
               

               
Cow position:
               
chr20:7182952-7183363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
34, 160
               

               
Conread position:
               
70-472
               

               
Cow position:
               
chr20:34486626-34486213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 16
               

               
Conread position:
               
83-474
               

               
Cow position:
               
chr20:33180522-33180922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
66, 113
               

               
Conread position:
               
101-473
               

               
Cow position:
               
chr20:8093783-8094168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
48, 81
               

               
Conread position:
               
115-471
               

               
Cow position:
               
chr20:32836568-32836220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
98, 26
               

               
Conread position:
               
138-471
               

               
Cow position:
               
chr20:9411243-9410903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
142, 9
               

               
Conread position:
               
138-474
               

               
Cow position:
               
chr20:22007114-22006772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
29, 9
               

               
Conread position:
               
289-475
               

               
Cow position:
               
chr20:34319251-34319063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
18, 45
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr21:24981138-24980701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
28, 8
               

               
Conread position:
               
3-475
               

               
Cow position:
               
chr21:44319788-44320253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
19, 46
               

               
Conread position:
               
13-475
               

               
Cow position:
               
chr21:21625720-21625268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 166
               

               
Conread position:
               
19-458
               

               
Cow position:
               
chr21:4137055-4137480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
26, 160
               

               
Conread position:
               
19-470
               

               
Cow position:
               
chr21:22456988-22456542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
147, 33
               

               
Conread position:
               
27-474
               

               
Cow position:
               
chr21:48291245-48291692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
114, 145
               

               
Conread position:
               
28-471
               

               
Cow position:
               
chr21:29214371-29214817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
203, 101
               

               
Conread position:
               
28-474
               

               
Cow position:
               
chr21:31975268-31974806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 158
               

               
Conread position:
               
32-471
               

               
Cow position:
               
chr21:37924297-37923844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
16, 103
               

               
Conread position:
               
34-426
               

               
Cow position:
               
chr21:3813689-3814086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
176, 96
               

               
Conread position:
               
34-471
               

               
Cow position:
               
chr21:31253105-31252666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
252, 80
               

               
Conread position:
               
34-471
               

               
Cow position:
               
chr21:37299243-37298809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
76, 97
               

               
Conread position:
               
34-475
               

               
Cow position:
               
chr21:18335626-18336064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 165
               

               
Conread position:
               
48-472
               

               
Cow position:
               
chr21:12440720-12440291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
77, 130
               

               
Conread position:
               
79-475
               

               
Cow position:
               
chr21:36956693-36956293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
12, 55
               

               
Conread position:
               
116-466
               

               
Cow position:
               
chr21:40214075-40213710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
59, 6
               

               
Conread position:
               
131-430
               

               
Cow position:
               
chr21:16230792-16230487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 61
               

               
Conread position:
               
131-471
               

               
Cow position:
               
chr21:15444045-15444379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
157, 40
               

               
Conread position:
               
167-471
               

               
Cow position:
               
chr21:17208154-17207831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
14, 281
               

               
Conread position:
               
197-472
               

               
Cow position:
               
chr21:27521748-27522029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
81, 115
               

               
Conread position:
               
239-471
               

               
Cow position:
               
chr21:36534304-36534544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 106
               

               
Conread position:
               
20-459
               

               
Cow position:
               
chr22:1591980-1591543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
15, 111
               

               
Conread position:
               
20-471
               

               
Cow position:
               
chr22:11753705-11754158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
5, 50
               

               
Conread position:
               
24-474
               

               
Cow position:
               
chr22:7231877-7231419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
227, 136
               

               
Conread position:
               
25-475
               

               
Cow position:
               
chr22:34917564-34917103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
159, 168
               

               
Conread position:
               
28-458
               

               
Cow position:
               
chr22:13210320-13209893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
104, 93
               

               
Conread position:
               
28-458
               

               
Cow position:
               
chr22:41353359-41353793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
14, 161
               

               
Conread position:
               
28-471
               

               
Cow position:
               
chr22:31870534-31870977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
257, 101
               

               
Conread position:
               
28-474
               

               
Cow position:
               
chr22:13017064-13017515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
180, 31
               

               
Conread position:
               
33-456
               

               
Cow position:
               
chr22:9978443-9978010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
13, 30
               

               
Conread position:
               
34-457
               

               
Cow position:
               
chr22:41961169-41961598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
88, 45
               

               
Conread position:
               
34-470
               

               
Cow position:
               
chr22:10676964-10677407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
14, 10
               

               
Conread position:
               
34-471
               

               
Cow position:
               
chr22:11837490-11837927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
253, 95
               

               
Conread position:
               
34-471
               

               
Cow position:
               
chr22:37535392-37535832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
136, 52
               

               
Conread position:
               
48-426
               

               
Cow position:
               
chr22:37996394-37996767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
122, 111
               

               
Conread position:
               
53-474
               

               
Cow position:
               
chr22:41840431-41840870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
15, 8
               

               
Conread position:
               
54-474
               

               
Cow position:
               
chr22:6927784-6927366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
153, 25
               

               
Conread position:
               
55-475
               

               
Cow position:
               
chr22:23006371-23006796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
113, 122
               

               
Conread position:
               
61-475
               

               
Cow position:
               
chr22:29581541-29581142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
218, 14
               

               
Conread position:
               
79-473
               

               
Cow position:
               
chr22:43093554-43093146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
37, 272
               

               
Conread position:
               
88-471
               

               
Cow position:
               
chr22:32223589-32223216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
194, 36
               

               
Conread position:
               
99-474
               

               
Cow position:
               
chr22:33386748-33387132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
49, 28
               

               
Conread position:
               
109-475
               

               
Cow position:
               
chr22:42722699-42723062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
57, 69
               

               
Conread position:
               
135-451
               

               
Cow position:
               
chr22:11386210-11385886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
20, 44
               

               
Conread position:
               
138-474
               

               
Cow position:
               
chr22:40376401-40376050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
70, 9
               

               
Conread position:
               
140-473
               

               
Cow position:
               
chr22:13187092-13186771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
26, 5
               

               
Conread position:
               
156-471
               

               
Cow position:
               
chr22:540954-540630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 22
               

               
Conread position:
               
157-471
               

               
Cow position:
               
chr22:864914-865236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
31, 45
               

               
Conread position:
               
193-475
               

               
Cow position:
               
chr22:20457553-20457265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
57, 147
               

               
Conread position:
               
202-474
               

               
Cow position:
               
chr22:6677969-6678251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
82, 143
               

               
Conread position:
               
20-455
               

               
Cow position:
               
chr23:3459012-3459439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
15, 25
               

               
Conread position:
               
54-469
               

               
Cow position:
               
chr23:14268200-14267786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
138, 80
               

               
Conread position:
               
90-473
               

               
Cow position:
               
chr23:24822143-24822523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
37, 42
               

               
Conread position:
               
92-474
               

               
Cow position:
               
chr23:39754426-39754041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
74, 25
               

               
Conread position:
               
185-474
               

               
Cow position:
               
chr23:38775588-38775294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
5, 22
               

               
Conread position:
               
202-471
               

               
Cow position:
               
chr23:4531935-4532218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
28-453
               

               
Cow position:
               
chr24:29071378-29071820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
20, 177
               

               
Conread position:
               
34-470
               

               
Cow position:
               
chr24:21555709-21555269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
134, 10
               

               
Conread position:
               
79-434
               

               
Cow position:
               
chr24:39048502-39048856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
106, 51
               

               
Conread position:
               
113-471
               

               
Cow position:
               
chr24:17683352-17683712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
57, 65
               

               
Conread position:
               
148-471
               

               
Cow position:
               
chr24:29180259-29179942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
131, 68
               

               
Conread position:
               
203-436
               

               
Cow position:
               
chr24:29170517-29170274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
77, 140
               

               
Conread position:
               
20-459
               

               
Cow position:
               
chr25:36351471-36351028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
5, 25
               

               
Conread position:
               
24-475
               

               
Cow position:
               
chr25:37330985-37330528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
51, 107
               

               
Conread position:
               
29-328
               

               
Cow position:
               
chr25:34023392-34023684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
289, 76
               

               
Conread position:
               
31-474
               

               
Cow position:
               
chr25:17658330-17657887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
177, 82
               

               
Conread position:
               
34-474
               

               
Cow position:
               
chr25:33231062-33231507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
49, 120
               

               
Conread position:
               
144-471
               

               
Cow position:
               
chr25:19924133-19923799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
12, 6
               

               
Conread position:
               
192-456
               

               
Cow position:
               
chr25:12237967-12237695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
10, 31
               

               
Conread position:
               
193-469
               

               
Cow position:
               
chr25:30162602-30162888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
93, 171
               

               
Conread position:
               
209-474
               

               
Cow position:
               
chr25:8015718-8015447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 123
               

               
Conread position:
               
6-471
               

               
Cow position:
               
chr26:26666023-26666495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
29, 192
               

               
Conread position:
               
14-474
               

               
Cow position:
               
chr26:12550774-12551235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
15, 165
               

               
Conread position:
               
20-471
               

               
Cow position:
               
chr26:7558617-7559082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
5, 25
               

               
Conread position:
               
20-475
               

               
Cow position:
               
chr26:20599821-20600272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
10, 93
               

               
Conread position:
               
23-471
               

               
Cow position:
               
chr26:19326947-19326511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
81, 59
               

               
Conread position:
               
32-471
               

               
Cow position:
               
chr26:8885821-8885376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
13, 103
               

               
Conread position:
               
34-474
               

               
Cow position:
               
chr26:27416863-27416428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
84, 33
               

               
Conread position:
               
48-448
               

               
Cow position:
               
chr26:19945995-19946383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
212, 57
               

               
Conread position:
               
59-457
               

               
Cow position:
               
chr26:8271092-8271492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
214, 29
               

               
Conread position:
               
88-470
               

               
Cow position:
               
chr26:7022705-7022322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
52, 29
               

               
Conread position:
               
106-474
               

               
Cow position:
               
chr26:19861688-19861315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
79, 84
               

               
Conread position:
               
121-474
               

               
Cow position:
               
chr26:19132326-19131983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
165, 13
               

               
Conread position:
               
134-471
               

               
Cow position:
               
chr26:6843342-6843687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
34, 44
               

               
Conread position:
               
156-471
               

               
Cow position:
               
chr26:1342436-1342761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
123, 60
               

               
Conread position:
               
186-469
               

               
Cow position:
               
chr26:6030173-6030467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
24, 165
               

               
Conread position:
               
224-473
               

               
Cow position:
               
chr26:27137463-27137717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
8, 115
               

               
Conread position:
               
230-472
               

               
Cow position:
               
chr26:29185189-29185439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
53, 209
               

               
Conread position:
               
14-471
               

               
Cow position:
               
chr27:12191228-12190763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
11, 136
               

               
Conread position:
               
28-473
               

               
Cow position:
               
chr27:15509197-15508739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
26, 96
               

               
Conread position:
               
28-475
               

               
Cow position:
               
chr27:12173879-12173421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 100
               

               
Conread position:
               
34-471
               

               
Cow position:
               
chr27:20828465-20828021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
134, 104
               

               
Conread position:
               
34-473
               

               
Cow position:
               
chr27:8430185-8429740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
103, 116
               

               
Conread position:
               
35-470
               

               
Cow position:
               
chr27:21259647-21260077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
205, 32
               

               
Conread position:
               
36-471
               

               
Cow position:
               
chr27:12278034-12277596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
172, 72
               

               
Conread position:
               
63-471
               

               
Cow position:
               
chr27:17338203-17338613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
90, 48
               

               
Conread position:
               
138-461
               

               
Cow position:
               
chr27:27683690-27683362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
131, 9
               

               
Conread position:
               
156-471
               

               
Cow position:
               
chr27:13198263-13198581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 20
               

               
Conread position:
               
171-472
               

               
Cow position:
               
chr27:26644448-26644767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 276
               

               
Conread position:
               
197-473
               

               
Cow position:
               
chr27:27731366-27731652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 243
               

               
Conread position:
               
28-373
               

               
Cow position:
               
chr28:23903846-23903509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
20, 16
               

               
Conread position:
               
28-468
               

               
Cow position:
               
chr28:22499425-22498985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
20, 16
               

               
Conread position:
               
28-469
               

               
Cow position:
               
chr28:28127329-28126885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
138, 96
               

               
Conread position:
               
34-474
               

               
Cow position:
               
chr28:5805239-5804795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
134, 96
               

               
Conread position:
               
59-467
               

               
Cow position:
               
chr28:23321650-23322066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
99, 10
               

               
Conread position:
               
137-471
               

               
Cow position:
               
chr28:23869109-23868769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
142, 17
               

               
Conread position:
               
193-475
               

               
Cow position:
               
chr28:33486109-33485828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
11, 78
               

               
Conread position:
               
229-471
               

               
Cow position:
               
chr28:4214678-4214426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
49, 210
               

               
Conread position:
               
17-475
               

               
Cow position:
               
chr29:40117301-40116826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
100, 182
               

               
Conread position:
               
24-434
               

               
Cow position:
               
chr29:20642443-20642020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
67, 108
               

               
Conread position:
               
24-475
               

               
Cow position:
               
chr29:30809469-30809010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
90, 100
               

               
Conread position:
               
28-260
               

               
Cow position:
               
chr29:19547166-19547394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
174, 40
               

               
Conread position:
               
47-453
               

               
Cow position:
               
chr29:3046868-3047277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 61
               

               
Conread position:
               
62-474
               

               
Cow position:
               
chr29:39331166-39330745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
158, 123
               

               
Conread position:
               
64-434
               

               
Cow position:
               
chr29:6437865-6437491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
149, 43
               

               
Conread position:
               
111-474
               

               
Cow position:
               
chr29:31041632-31042005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
110, 39
               

               
Conread position:
               
138-471
               

               
Cow position:
               
chr29:15944186-15943846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
140, 9
               

               
Conread position:
               
194-473
               

               
Cow position:
               
chr29:34120725-34121011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
92, 148
               

               
Conread position:
               
14-474
               

               
Cow position:
               
chr3:30004190-30003733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
17, 170
               

               
Conread position:
               
23-455
               

               
Cow position:
               
chr3:64404064-64404496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
83, 134
               

               
Conread position:
               
28-263
               

               
Cow position:
               
chr3:76976470-76976237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
182, 160
               

               
Conread position:
               
28-332
               

               
Cow position:
               
chr3:43426467-43426166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
28-471
               

               
Cow position:
               
chr3:4031613-4031167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
178, 99
               

               
Conread position:
               
28-471
               

               
Cow position:
               
chr3:51033046-51032597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
21, 92
               

               
Conread position:
               
28-474
               

               
Cow position:
               
chr3:24308854-24308398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
22, 43
               

               
Conread position:
               
34-465
               

               
Cow position:
               
chr3:78204813-78204376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
250, 43
               

               
Conread position:
               
34-471
               

               
Cow position:
               
chr3:17937160-17937596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
174, 96
               

               
Conread position:
               
47-475
               

               
Cow position:
               
chr3:10039258-10038840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
111, 67
               

               
Conread position:
               
53-455
               

               
Cow position:
               
chr3:43670791-43671185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
242, 13
               

               
Conread position:
               
55-473
               

               
Cow position:
               
chr3:70519458-70519882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
100, 283
               

               
Conread position:
               
128-475
               

               
Cow position:
               
chr3:45863168-45863519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
84, 57
               

               
Conread position:
               
131-452
               

               
Cow position:
               
chr3:38252577-38252261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
148, 40
               

               
Conread position:
               
131-474
               

               
Cow position:
               
chr3:55130116-55129767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
160, 45
               

               
Conread position:
               
138-451
               

               
Cow position:
               
chr3:45184247-45184561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
141, 21
               

               
Conread position:
               
138-474
               

               
Cow position:
               
chr3:79094474-79094804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
141, 9
               

               
Conread position:
               
157-474
               

               
Cow position:
               
chr3:13684268-13683933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
17, 97
               

               
Conread position:
               
202-451
               

               
Cow position:
               
chr3:3301323-3301068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
77, 148
               

               
Conread position:
               
1-183
               

               
Cow position:
               
chr4:6628209-6628027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
67, 80
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr4:20614939-20615378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
6-474
               

               
Cow position:
               
chr4:60493941-60493466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
28, 195
               

               
Conread position:
               
28-458
               

               
Cow position:
               
chr4:27540334-27539903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 32
               

               
Conread position:
               
28-468
               

               
Cow position:
               
chr4:8704484-8704039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
175, 102
               

               
Conread position:
               
28-471
               

               
Cow position:
               
chr4:3850270-3849830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
181, 126
               

               
Conread position:
               
31-435
               

               
Cow position:
               
chr4:34492079-34492492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
17, 13
               

               
Conread position:
               
31-458
               

               
Cow position:
               
chr4:37955484-37955914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
108, 115
               

               
Conread position:
               
34-473
               

               
Cow position:
               
chr4:49386936-49387381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 53
               

               
Conread position:
               
34-475
               

               
Cow position:
               
chr4:20790453-20790009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
136, 111
               

               
Conread position:
               
90-455
               

               
Cow position:
               
chr4:5008114-5007739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
76, 52
               

               
Conread position:
               
105-474
               

               
Cow position:
               
chr4:1984500-1984125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
43, 20
               

               
Conread position:
               
131-460
               

               
Cow position:
               
chr4:62570266-62569926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 70
               

               
Conread position:
               
174-474
               

               
Cow position:
               
chr4:888597-888296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
178, 22
               

               
Conread position:
               
174-474
               

               
Cow position:
               
chr4:25305541-25305237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
113, 23
               

               
Conread position:
               
202-475
               

               
Cow position:
               
chr4:39510674-39510952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
85, 14
               

               
Conread position:
               
210-465
               

               
Cow position:
               
chr4:25850487-25850226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
74, 128
               

               
Conread position:
               
20-474
               

               
Cow position:
               
chr5:55113000-55112540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
182, 11
               

               
Conread position:
               
24-470
               

               
Cow position:
               
chr5:26402065-26402497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
92, 100
               

               
Conread position:
               
34-473
               

               
Cow position:
               
chr5:6670416-6670858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
176, 106
               

               
Conread position:
               
34-474
               

               
Cow position:
               
chr5:44359647-44359203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
58, 117
               

               
Conread position:
               
47-475
               

               
Cow position:
               
chr5:70093946-70093514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
233, 103
               

               
Conread position:
               
82-473
               

               
Cow position:
               
chr5:70289201-70289590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
201, 62
               

               
Conread position:
               
89-475
               

               
Cow position:
               
chr5:32614342-32614728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
189, 41
               

               
Conread position:
               
98-457
               

               
Cow position:
               
chr5:23351762-23351405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
193, 117
               

               
Conread position:
               
138-471
               

               
Cow position:
               
chr5:45705672-45705336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
141, 9
               

               
Conread position:
               
138-471
               

               
Cow position:
               
chr5:52289422-52289081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
67, 9
               

               
Conread position:
               
156-471
               

               
Cow position:
               
chr5:10478994-10479317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
12, 22
               

               
Conread position:
               
171-461
               

               
Cow position:
               
chr5:33537341-33537041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
193-475
               

               
Cow position:
               
chr5:12235304-12235014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
9, 154
               

               
Conread position:
               
202-470
               

               
Cow position:
               
chr5:20017310-20017580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
107, 27
               

               
Conread position:
               
217-471
               

               
Cow position:
               
chr5:24299602-24299338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
57, 128
               

               
Conread position:
               
14-457
               

               
Cow position:
               
chr6:35725867-35725415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
21, 161
               

               
Conread position:
               
25-474
               

               
Cow position:
               
chr6:17757810-17757365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 85
               

               
Conread position:
               
28-474
               

               
Cow position:
               
chr6:50527419-50526970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
110, 118
               

               
Conread position:
               
28-475
               

               
Cow position:
               
chr6:15991036-15991484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
251, 105
               

               
Conread position:
               
34-471
               

               
Cow position:
               
chr6:28343405-28342967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
246, 97
               

               
Conread position:
               
34-471
               

               
Cow position:
               
chr6:46283208-46283641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
35, 53
               

               
Conread position:
               
36-451
               

               
Cow position:
               
chr6:51970106-51970530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
105, 50
               

               
Conread position:
               
156-471
               

               
Cow position:
               
chr6:2875248-2875570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
123, 60
               

               
Conread position:
               
156-471
               

               
Cow position:
               
chr6:44146163-44146485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
12, 22
               

               
Conread position:
               
193-471
               

               
Cow position:
               
chr6:58037033-58036747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
12, 25
               

               
Conread position:
               
6-474
               

               
Cow position:
               
chr7:35898836-35899307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
117, 33
               

               
Conread position:
               
8-450
               

               
Cow position:
               
chr7:25015570-25016023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 180
               

               
Conread position:
               
22-450
               

               
Cow position:
               
chr7:25024290-25024730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 167
               

               
Conread position:
               
28-471
               

               
Cow position:
               
chr7:29509738-29509297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
14, 105
               

               
Conread position:
               
28-471
               

               
Cow position:
               
chr7:33068534-33068982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
21, 90
               

               
Conread position:
               
28-473
               

               
Cow position:
               
chr7:59245410-59244963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
234, 31
               

               
Conread position:
               
31-475
               

               
Cow position:
               
chr7:35753042-35753488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
108, 115
               

               
Conread position:
               
34-471
               

               
Cow position:
               
chr7:21423379-21423813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
14, 10
               

               
Conread position:
               
36-448
               

               
Cow position:
               
chr7:51674131-51674545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
243, 50
               

               
Conread position:
               
47-470
               

               
Cow position:
               
chr7:26733980-26734414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
119, 9
               

               
Conread position:
               
126-469
               

               
Cow position:
               
chr7:59093464-59093122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 88
               

               
Conread position:
               
131-475
               

               
Cow position:
               
chr7:48548245-48548606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
8, 15
               

               
Conread position:
               
166-464
               

               
Cow position:
               
chr7:66153364-66153677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
15, 186
               

               
Conread position:
               
166-471
               

               
Cow position:
               
chr7:27395001-27394679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 186
               

               
Conread position:
               
14-473
               

               
Cow position:
               
chr8:33173803-33174253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
21, 104
               

               
Conread position:
               
14-474
               

               
Cow position:
               
chr8:47868487-47868956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 110
               

               
Conread position:
               
20-471
               

               
Cow position:
               
chr8:17315782-17315330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 24
               

               
Conread position:
               
28-438
               

               
Cow position:
               
chr8:56279745-56279328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
255, 24
               

               
Conread position:
               
28-456
               

               
Cow position:
               
chr8:3446344-3446774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
174, 100
               

               
Conread position:
               
28-471
               

               
Cow position:
               
chr8:4727444-4727888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
20, 16
               

               
Conread position:
               
28-471
               

               
Cow position:
               
chr8:18289410-18289867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
28, 121
               

               
Conread position:
               
34-471
               

               
Cow position:
               
chr8:29416613-29417059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
105, 112
               

               
Conread position:
               
34-471
               

               
Cow position:
               
chr8:36858411-36858859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
134, 89
               

               
Conread position:
               
34-474
               

               
Cow position:
               
chr8:24872143-24872583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
78, 88
               

               
Conread position:
               
54-451
               

               
Cow position:
               
chr8:37998460-37998854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
45, 25
               

               
Conread position:
               
88-475
               

               
Cow position:
               
chr8:15184303-15184687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
115, 40
               

               
Conread position:
               
107-471
               

               
Cow position:
               
chr8:21732224-21731860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 16
               

               
Conread position:
               
117-445
               

               
Cow position:
               
chr8:11605976-11605638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
15, 81
               

               
Conread position:
               
117-451
               

               
Cow position:
               
chr8:39461712-39461368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
90, 69
               

               
Conread position:
               
134-436
               

               
Cow position:
               
chr8:57636-57323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
152, 61
               

               
Conread position:
               
138-471
               

               
Cow position:
               
chr8:45071004-45070663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
70, 9
               

               
Conread position:
               
138-471
               

               
Cow position:
               
chr8:45130653-45130995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
47, 11
               

               
Conread position:
               
140-474
               

               
Cow position:
               
chr8:21219782-21219441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
28, 14
               

               
Conread position:
               
154-444
               

               
Cow position:
               
chr8:38054511-38054213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
123, 41
               

               
Conread position:
               
156-471
               

               
Cow position:
               
chr8:32042851-32042528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
12, 24
               

               
Conread position:
               
177-471
               

               
Cow position:
               
chr8:42317226-42317529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
102, 39
               

               
Conread position:
               
183-471
               

               
Cow position:
               
chr8:27287391-27287691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 166
               

               
Conread position:
               
217-459
               

               
Cow position:
               
chr8:33897917-33898169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
62, 222
               

               
Conread position:
               
241-458
               

               
Cow position:
               
chr8:33437211-33436987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
39, 118
               

               
Conread position:
               
6-473
               

               
Cow position:
               
chr9:27051012-27050540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
104, 96
               

               
Conread position:
               
24-470
               

               
Cow position:
               
chr9:51314407-51314836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
283, 69
               

               
Conread position:
               
28-471
               

               
Cow position:
               
chr9:1997438-1997887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
178, 93
               

               
Conread position:
               
33-474
               

               
Cow position:
               
chr9:5030097-5030542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
5, 164
               

               
Conread position:
               
34-471
               

               
Cow position:
               
chr9:13181743-13181302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
134, 96
               

               
Conread position:
               
34-471
               

               
Cow position:
               
chr9:58614862-58615300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
35, 53
               

               
Conread position:
               
34-474
               

               
Cow position:
               
chr9:11337410-11337852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
15, 10
               

               
Conread position:
               
34-475
               

               
Cow position:
               
chr9:1855594-1856034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
175, 11
               

               
Conread position:
               
59-473
               

               
Cow position:
               
chr9:62131842-62131431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
112, 119
               

               
Conread position:
               
62-466
               

               
Cow position:
               
chr9:23852029-23851607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 50
               

               
Conread position:
               
95-459
               

               
Cow position:
               
chr9:29008551-29008924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
78, 104
               

               
Conread position:
               
117-474
               

               
Cow position:
               
chr9:39215379-39215015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
166, 71
               

               
Conread position:
               
118-470
               

               
Cow position:
               
chr9:48260135-48260489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 81
               

               
Conread position:
               
127-475
               

               
Cow position:
               
chr9:11438961-11439317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
173, 61
               

               
Conread position:
               
156-471
               

               
Cow position:
               
chr9:40142643-40142964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
12, 22
               

               
Conread position:
               
181-474
               

               
Cow position:
               
chr9:9260581-9260885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
27, 165
               

               
Conread position:
               
1-473
               

               
Cow position:
               
chrX:27407687-27408163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 82
               

               
Conread position:
               
14-233
               

               
Cow position:
               
chrX:42084771-42084551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
19, 27
               

               
Conread position:
               
14-470
               

               
Cow position:
               
chrX:19540586-19541034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
20, 149
               

               
Conread position:
               
20-471
               

               
Cow position:
               
chrX:1331688-1331243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
5, 104
               

               
Conread position:
               
21-473
               

               
Cow position:
               
chrX:9391089-9391550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
265, 103
               

               
Conread position:
               
24-471
               

               
Cow position:
               
chrX:17663161-17663618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
105, 124
               

               
Conread position:
               
24-474
               

               
Cow position:
               
chrX:6660262-6659826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
160, 45
               

               
Conread position:
               
28-471
               

               
Cow position:
               
chrX:36250111-36250558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 104
               

               
Conread position:
               
28-475
               

               
Cow position:
               
chrX:13885712-13885272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
21, 164
               

               
Conread position:
               
31-450
               

               
Cow position:
               
chrX:24950792-24951226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 52
               

               
Conread position:
               
34-449
               

               
Cow position:
               
chrX:11406425-11406007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
124, 68
               

               
Conread position:
               
34-474
               

               
Cow position:
               
chrX:30151852-30152300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
249, 111
               

               
Conread position:
               
38-470
               

               
Cow position:
               
chrX:6835522-6835958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
129, 86
               

               
Conread position:
               
47-471
               

               
Cow position:
               
chrX:18769629-18769211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
73, 65
               

               
Conread position:
               
54-459
               

               
Cow position:
               
chrX:18152534-18152947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
153, 5
               

               
Conread position:
               
61-474
               

               
Cow position:
               
chrX:3210830-3211247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
157, 60
               

               
Conread position:
               
79-449
               

               
Cow position:
               
chrX:6193623-6194007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
76, 151
               

               
Conread position:
               
91-470
               

               
Cow position:
               
chrX:14267516-14267903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
116, 43
               

               
Conread position:
               
99-475
               

               
Cow position:
               
chrX:1960898-1960513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
111-475
               

               
Cow position:
               
chrX:23927516-23927887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
187, 86
               

               
Conread position:
               
119-473
               

               
Cow position:
               
chrX:25280179-25280522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
190, 50
               

               
Conread position:
               
131-474
               

               
Cow position:
               
chrX:4409210-4408859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
17, 67
               

               
Conread position:
               
135-471
               

               
Cow position:
               
chrX:14781697-14782044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
22, 45
               

               
Conread position:
               
140-474
               

               
Cow position:
               
chrX:12094945-12095290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
72, 5
               

               
Conread position:
               
155-474
               

               
Cow position:
               
chrX:21625354-21625681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
30, 35
               

               
Conread position:
               
156-473
               

               
Cow position:
               
chrX:21196646-21196321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
132, 28
               

               
Conread position:
               
174-471
               

               
Cow position:
               
chrX:7178258-7177965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
34, 14