Non-Coding RNA Search

Cow genome map


           Conread name:
           rpigcb_14271.y1
        

               Conread position:
               1-261
               

               Cow position:
               chr1:76780026-76780305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               18, 61
               

               Conread position:
               25-140
               

               Cow position:
               chr1:17066132-17066016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               94
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               13, 80
               

               Conread position:
               26-241
               

               Cow position:
               chr1:34311204-34310993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               28, 11
               

               Conread position:
               33-260
               

               Cow position:
               chr1:11831645-11831419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               180
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               10, 68
               

               Conread position:
               36-261
               

               Cow position:
               chr1:64479609-64479827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               147, 60
               

               Conread position:
               37-183
               

               Cow position:
               chr1:47427912-47427765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               107
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               37-189
               

               Cow position:
               chr1:80329681-80329833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               124
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               37-192
               

               Cow position:
               chr1:41092812-41092974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               125
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               37-193
               

               Cow position:
               chr1:56858583-56858426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               98, 88
               

               Conread position:
               37-195
               

               Cow position:
               chr1:69290479-69290323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               108, 44
               

               Conread position:
               37-205
               

               Cow position:
               chr1:3020422-3020589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               101, 53
               

               Conread position:
               37-209
               

               Cow position:
               chr1:14560176-14560342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               108, 84
               

               Conread position:
               37-209
               

               Cow position:
               chr1:25885740-25885911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               154, 101
               

               Conread position:
               37-256
               

               Cow position:
               chr1:39244201-39244425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               37-258
               

               Cow position:
               chr1:74713819-74713601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               133, 40
               

               Conread position:
               37-260
               

               Cow position:
               chr1:37432737-37432505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               100, 91
               

               Conread position:
               37-262
               

               Cow position:
               chr1:85591-85365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               83, 44
               

               Conread position:
               37-262
               

               Cow position:
               chr1:71555450-71555657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               175
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               37-264
               

               Cow position:
               chr1:18223508-18223726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               37-264
               

               Cow position:
               chr1:82572884-82573109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 89
               

               Conread position:
               37-264
               

               Cow position:
               chr1:85409509-85409729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               37-267
               

               Cow position:
               chr1:31232977-31233212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               180
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               81, 14
               

               Conread position:
               38-195
               

               Cow position:
               chr1:79915575-79915415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               125
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               96, 79
               

               Conread position:
               38-197
               

               Cow position:
               chr1:58341662-58341499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               39-189
               

               Cow position:
               chr1:58881951-58882100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               39-191
               

               Cow position:
               chr1:28512289-28512441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               73, 87
               

               Conread position:
               39-246
               

               Cow position:
               chr1:49728235-49728030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               163
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               104, 88
               

               Conread position:
               39-264
               

               Cow position:
               chr1:30042086-30041871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               176
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               39-264
               

               Cow position:
               chr1:40164592-40164388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               40-202
               

               Cow position:
               chr1:61242074-61241916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               121
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               41-267
               

               Cow position:
               chr1:40420101-40420313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               123, 40
               

               Conread position:
               43-248
               

               Cow position:
               chr1:22495918-22495704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               85, 176
               

               Conread position:
               45-182
               

               Cow position:
               chr1:34627245-34627107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               109
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               45-193
               

               Cow position:
               chr1:23887313-23887166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               115
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               90, 36
               

               Conread position:
               46-181
               

               Cow position:
               chr1:76223664-76223800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               105
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               72, 89
               

               Conread position:
               46-190
               

               Cow position:
               chr1:11469323-11469179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               99, 24
               

               Conread position:
               47-264
               

               Cow position:
               chr1:92550790-92551001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               132, 0
               

               Conread position:
               48-227
               

               Cow position:
               chr1:27546166-27545993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               49-264
               

               Cow position:
               chr1:77755606-77755816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               55-229
               

               Cow position:
               chr1:63133980-63133799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               88, 51
               

               Conread position:
               56-193
               

               Cow position:
               chr1:86708978-86709119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               89, 74
               

               Conread position:
               56-243
               

               Cow position:
               chr1:2296702-2296517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               56-264
               

               Cow position:
               chr1:11878822-11879027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               167
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               87, 134
               

               Conread position:
               67-264
               

               Cow position:
               chr1:52207020-52206823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               12, 99
               

               Conread position:
               72-264
               

               Cow position:
               chr1:69061563-69061380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               147
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               73-264
               

               Cow position:
               chr1:64098954-64099133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               181, 38
               

               Conread position:
               80-269
               

               Cow position:
               chr1:45978235-45978047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               146
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               98, 58
               

               Conread position:
               94-264
               

               Cow position:
               chr1:102556902-102556734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               49, 100
               

               Conread position:
               108-264
               

               Cow position:
               chr1:19439723-19439879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               38, 74
               

               Conread position:
               144-264
               

               Cow position:
               chr1:22070521-22070401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               100
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               145-264
               

               Cow position:
               chr1:81371429-81371548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               94
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-191
               

               Cow position:
               chr10:38821740-38821544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               25-296
               

               Cow position:
               chr10:27223120-27222845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               209
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               13, 104
               

               Conread position:
               34-229
               

               Cow position:
               chr10:1352281-1352082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               100, 16
               

               Conread position:
               36-193
               

               Cow position:
               chr10:27132664-27132828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               37-184
               

               Cow position:
               chr10:17923356-17923209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               112, 94
               

               Conread position:
               37-191
               

               Cow position:
               chr10:36303484-36303635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               124
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               105, 32
               

               Conread position:
               37-191
               

               Cow position:
               chr10:60909951-60910105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               37-233
               

               Cow position:
               chr10:11276003-11275799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               37-263
               

               Cow position:
               chr10:12199346-12199119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 132
               

               Conread position:
               37-263
               

               Cow position:
               chr10:60243305-60243077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               37-264
               

               Cow position:
               chr10:3318214-3317976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               43, 7
               

               Conread position:
               37-264
               

               Cow position:
               chr10:22859812-22860045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               101, 61
               

               Conread position:
               37-264
               

               Cow position:
               chr10:48208452-48208676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               175
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               106, 46
               

               Conread position:
               37-264
               

               Cow position:
               chr10:68203753-68203984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               173
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               37-265
               

               Cow position:
               chr10:38472543-38472311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               89, 17
               

               Conread position:
               37-267
               

               Cow position:
               chr10:22455525-22455301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               174
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               37-267
               

               Cow position:
               chr10:43060758-43061004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               186
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               39-192
               

               Cow position:
               chr10:50141180-50141336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               119
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               15, 146
               

               Conread position:
               39-264
               

               Cow position:
               chr10:767454-767669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               42-264
               

               Cow position:
               chr10:37428351-37428571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               84, 38
               

               Conread position:
               45-182
               

               Cow position:
               chr10:1328152-1328288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               104
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               90, 80
               

               Conread position:
               45-191
               

               Cow position:
               chr10:18863201-18863052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               117
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               90, 33
               

               Conread position:
               46-192
               

               Cow position:
               chr10:22448190-22448333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               50-178
               

               Cow position:
               chr10:55437949-55438082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               105
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               50-191
               

               Cow position:
               chr10:28508909-28509057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               52-264
               

               Cow position:
               chr10:23879842-23880046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               174
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 24
               

               Conread position:
               54-190
               

               Cow position:
               chr10:63621701-63621833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               56-191
               

               Cow position:
               chr10:60688028-60688164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               56-262
               

               Cow position:
               chr10:67051011-67050807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               24, 57
               

               Conread position:
               57-263
               

               Cow position:
               chr10:28565920-28566132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               58-264
               

               Cow position:
               chr10:45650976-45650774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               156
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               20, 39
               

               Conread position:
               73-240
               

               Cow position:
               chr10:53374974-53375142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               62, 54
               

               Conread position:
               82-263
               

               Cow position:
               chr10:68979833-68979660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               61, 86
               

               Conread position:
               88-261
               

               Cow position:
               chr10:4994261-4994450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               148
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               1-227
               

               Cow position:
               chr11:27817114-27817348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               34, 125
               

               Conread position:
               1-264
               

               Cow position:
               chr11:82529262-82528992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               213
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               12, 7
               

               Conread position:
               8-264
               

               Cow position:
               chr11:77772319-77772569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               194
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               103, 11
               

               Conread position:
               25-259
               

               Cow position:
               chr11:25807379-25807620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               13, 111
               

               Conread position:
               25-264
               

               Cow position:
               chr11:10877611-10877366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               189
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               13, 107
               

               Conread position:
               35-187
               

               Cow position:
               chr11:26515499-26515344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               115
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               37-182
               

               Cow position:
               chr11:55354341-55354485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               24, 91
               

               Conread position:
               37-184
               

               Cow position:
               chr11:26369109-26369260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               37-187
               

               Cow position:
               chr11:81336931-81337082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               114
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               37-191
               

               Cow position:
               chr11:24008440-24008290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               119
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               89, 14
               

               Conread position:
               37-191
               

               Cow position:
               chr11:77193689-77193842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               114
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               106, 141
               

               Conread position:
               37-193
               

               Cow position:
               chr11:17737661-17737506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               114
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               106, 80
               

               Conread position:
               37-193
               

               Cow position:
               chr11:21544396-21544240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               94, 66
               

               Conread position:
               37-198
               

               Cow position:
               chr11:58793660-58793815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               37-209
               

               Cow position:
               chr11:25856536-25856377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               37-211
               

               Cow position:
               chr11:18452798-18452971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               148
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               101, 115
               

               Conread position:
               37-213
               

               Cow position:
               chr11:34265745-34265565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               71, 161
               

               Conread position:
               37-229
               

               Cow position:
               chr11:77819930-77820118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               106, 146
               

               Conread position:
               37-241
               

               Cow position:
               chr11:43831462-43831665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               137, 96
               

               Conread position:
               37-262
               

               Cow position:
               chr11:57753035-57753271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               46, 91
               

               Conread position:
               37-264
               

               Cow position:
               chr11:5221083-5221312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 87
               

               Conread position:
               37-264
               

               Cow position:
               chr11:9424260-9424030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               150, 94
               

               Conread position:
               37-264
               

               Cow position:
               chr11:18153902-18154133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 50
               

               Conread position:
               37-264
               

               Cow position:
               chr11:22851384-22851153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               110, 83
               

               Conread position:
               37-264
               

               Cow position:
               chr11:34303812-34303580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               181
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               71, 153
               

               Conread position:
               37-264
               

               Cow position:
               chr11:35251642-35251877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               177
               

               Alignm E-value:
               8.99999e-40
               

               Alignm gaps (pig, cow):
               89, 50
               

               Conread position:
               37-264
               

               Cow position:
               chr11:51177821-51177598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               92, 40
               

               Conread position:
               37-264
               

               Cow position:
               chr11:57153319-57153546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               174
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               72, 38
               

               Conread position:
               37-264
               

               Cow position:
               chr11:77756414-77756643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               138, 14
               

               Conread position:
               37-269
               

               Cow position:
               chr11:52859811-52859574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               98, 160
               

               Conread position:
               38-264
               

               Cow position:
               chr11:69491761-69491536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               37, 56
               

               Conread position:
               40-239
               

               Cow position:
               chr11:55119811-55119616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               103, 26
               

               Conread position:
               40-264
               

               Cow position:
               chr11:21893139-21893354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               28, 92
               

               Conread position:
               41-191
               

               Cow position:
               chr11:8087817-8087963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               124
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               90, 12
               

               Conread position:
               41-264
               

               Cow position:
               chr11:34761384-34761598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               102, 70
               

               Conread position:
               42-264
               

               Cow position:
               chr11:34024913-34024678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               96, 83
               

               Conread position:
               47-264
               

               Cow position:
               chr11:40574433-40574657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               79, 66
               

               Conread position:
               57-224
               

               Cow position:
               chr11:34397807-34397638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               69, 125
               

               Conread position:
               59-173
               

               Cow position:
               chr11:21117502-21117387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               92
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               63-187
               

               Cow position:
               chr11:47346816-47346692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               101
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               79, 114
               

               Conread position:
               64-262
               

               Cow position:
               chr11:57062189-57061995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               152
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               79, 27
               

               Conread position:
               66-264
               

               Cow position:
               chr11:39830906-39831105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               60, 105
               

               Conread position:
               66-264
               

               Cow position:
               chr11:77763184-77763386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               115, 71
               

               Conread position:
               74-246
               

               Cow position:
               chr11:60822421-60822600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               66, 158
               

               Conread position:
               76-268
               

               Cow position:
               chr11:35284147-35283951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               151
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               70, 8
               

               Conread position:
               116-263
               

               Cow position:
               chr11:7131215-7131058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               8-264
               

               Cow position:
               chr12:33278274-33278007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               198
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               119, 189
               

               Conread position:
               25-264
               

               Cow position:
               chr12:16961931-16961699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               185
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               19, 34
               

               Conread position:
               25-264
               

               Cow position:
               chr12:36975086-36975334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               13, 78
               

               Conread position:
               35-264
               

               Cow position:
               chr12:23892845-23892624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               169
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               109, 12
               

               Conread position:
               37-140
               

               Cow position:
               chr12:11306318-11306419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               104
               

               Alignm identity:
               86
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               37-170
               

               Cow position:
               chr12:28214420-28214288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               106
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               37-174
               

               Cow position:
               chr12:38632326-38632190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               112
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               37-180
               

               Cow position:
               chr12:8767310-8767451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               115
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               96, 73
               

               Conread position:
               37-182
               

               Cow position:
               chr12:7936750-7936905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               119
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               94, 47
               

               Conread position:
               37-193
               

               Cow position:
               chr12:32107324-32107166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               90, 44
               

               Conread position:
               37-251
               

               Cow position:
               chr12:18442988-18442783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               105, 90
               

               Conread position:
               37-261
               

               Cow position:
               chr12:1993255-1993483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               101, 19
               

               Conread position:
               37-261
               

               Cow position:
               chr12:26310774-26310991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               37-263
               

               Cow position:
               chr12:7025127-7025354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               105, 69
               

               Conread position:
               37-264
               

               Cow position:
               chr12:2837931-2838148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               108, 38
               

               Conread position:
               37-264
               

               Cow position:
               chr12:10161634-10161862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 133
               

               Conread position:
               37-264
               

               Cow position:
               chr12:21066521-21066296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               105, 147
               

               Conread position:
               37-264
               

               Cow position:
               chr12:27423579-27423356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               107, 73
               

               Conread position:
               39-264
               

               Cow position:
               chr12:8467868-8468087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               136, 27
               

               Conread position:
               46-226
               

               Cow position:
               chr12:28738634-28738460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               157, 81
               

               Conread position:
               58-193
               

               Cow position:
               chr12:27628882-27629019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               102
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               67-264
               

               Cow position:
               chr12:23498430-23498230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               9, 61
               

               Conread position:
               72-264
               

               Cow position:
               chr12:25514167-25513980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               67, 85
               

               Conread position:
               76-193
               

               Cow position:
               chr12:11187482-11187365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               96
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               62, 102
               

               Conread position:
               76-264
               

               Cow position:
               chr12:29760355-29760539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               67, 5
               

               Conread position:
               14-267
               

               Cow position:
               chr13:30951293-30951542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               15, 164
               

               Conread position:
               24-264
               

               Cow position:
               chr13:38535009-38535236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               33, 29
               

               Conread position:
               25-193
               

               Cow position:
               chr13:4518961-4519126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               13, 44
               

               Conread position:
               25-193
               

               Cow position:
               chr13:43803305-43803136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               13, 159
               

               Conread position:
               26-213
               

               Cow position:
               chr13:18839305-18839118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               154
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               119, 11
               

               Conread position:
               26-264
               

               Cow position:
               chr13:37498104-37497878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               186
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               117, 11
               

               Conread position:
               26-264
               

               Cow position:
               chr13:39487702-39487472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 11
               

               Conread position:
               36-176
               

               Cow position:
               chr13:51142641-51142780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               108
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               104, 87
               

               Conread position:
               36-263
               

               Cow position:
               chr13:19115782-19115570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               37-155
               

               Cow position:
               chr13:11223053-11223174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               95
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               37-191
               

               Cow position:
               chr13:7803917-7804067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               116
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               37-191
               

               Cow position:
               chr13:26255361-26255512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               121
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               44, 95
               

               Conread position:
               37-193
               

               Cow position:
               chr13:17127386-17127542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               87, 98
               

               Conread position:
               37-193
               

               Cow position:
               chr13:57746188-57746028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               118
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               72, 80
               

               Conread position:
               37-261
               

               Cow position:
               chr13:34885344-34885116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 218
               

               Conread position:
               37-262
               

               Cow position:
               chr13:24676034-24675818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               33, 145
               

               Conread position:
               37-264
               

               Cow position:
               chr13:25955258-25955472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               37-264
               

               Cow position:
               chr13:46464450-46464671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 90
               

               Conread position:
               37-264
               

               Cow position:
               chr13:47325523-47325757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 96
               

               Conread position:
               37-264
               

               Cow position:
               chr13:51241092-51240875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               37-264
               

               Cow position:
               chr13:62271760-62271980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               38-220
               

               Cow position:
               chr13:21878314-21878498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               103, 44
               

               Conread position:
               38-262
               

               Cow position:
               chr13:55407033-55406814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               175
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               108, 30
               

               Conread position:
               39-210
               

               Cow position:
               chr13:26943173-26942998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               84, 149
               

               Conread position:
               40-204
               

               Cow position:
               chr13:28605780-28605608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               40-263
               

               Cow position:
               chr13:17169561-17169346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               45-187
               

               Cow position:
               chr13:20656687-20656546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               45-187
               

               Cow position:
               chr13:28590423-28590272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               45-223
               

               Cow position:
               chr13:50662100-50661920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               88, 56
               

               Conread position:
               46-191
               

               Cow position:
               chr13:4546292-4546440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               111
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               82, 144
               

               Conread position:
               46-193
               

               Cow position:
               chr13:15746863-15747007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               47-191
               

               Cow position:
               chr13:17319955-17320099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               110
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               93, 28
               

               Conread position:
               50-193
               

               Cow position:
               chr13:15731212-15731353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               108
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               69, 47
               

               Conread position:
               51-193
               

               Cow position:
               chr13:33239869-33239726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               74, 84
               

               Conread position:
               54-264
               

               Cow position:
               chr13:12325454-12325257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               136, 27
               

               Conread position:
               58-259
               

               Cow position:
               chr13:34336611-34336415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               162
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               59-193
               

               Cow position:
               chr13:25005427-25005291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               106
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               82, 26
               

               Conread position:
               60-263
               

               Cow position:
               chr13:30834172-30833983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               70-269
               

               Cow position:
               chr13:46373134-46373323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               145
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               97, 53
               

               Conread position:
               72-263
               

               Cow position:
               chr13:34264755-34264950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               157
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               72-264
               

               Cow position:
               chr13:45497602-45497404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               72-264
               

               Cow position:
               chr13:59997689-59997883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               156
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               73, 99
               

               Conread position:
               74-248
               

               Cow position:
               chr13:44144073-44144252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               66, 32
               

               Conread position:
               76-195
               

               Cow position:
               chr13:20243746-20243627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               94
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               110, 5
               

               Conread position:
               80-238
               

               Cow position:
               chr13:15489754-15489590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               131
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               81-262
               

               Cow position:
               chr13:11441676-11441501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               62, 30
               

               Conread position:
               85-252
               

               Cow position:
               chr13:698504-698322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               51, 42
               

               Conread position:
               87-264
               

               Cow position:
               chr13:4794194-4794012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               40, 126
               

               Conread position:
               105-264
               

               Cow position:
               chr13:38361972-38362132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               91, 24
               

               Conread position:
               1-196
               

               Cow position:
               chr14:14245272-14245471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               22, 70
               

               Conread position:
               2-264
               

               Cow position:
               chr14:45184979-45185251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               13, 75
               

               Conread position:
               23-264
               

               Cow position:
               chr14:24192996-24193242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               9, 15
               

               Conread position:
               25-191
               

               Cow position:
               chr14:20642995-20642840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               25-191
               

               Cow position:
               chr14:31372487-31372655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               35-191
               

               Cow position:
               chr14:45152062-45151904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               116
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               114, 92
               

               Conread position:
               37-205
               

               Cow position:
               chr14:46980329-46980161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               133, 21
               

               Conread position:
               37-226
               

               Cow position:
               chr14:24738932-24739123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               151
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               89, 29
               

               Conread position:
               37-235
               

               Cow position:
               chr14:42258642-42258837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               105, 51
               

               Conread position:
               37-254
               

               Cow position:
               chr14:2299235-2299022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               166
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               37-261
               

               Cow position:
               chr14:3588769-3588538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               135, 81
               

               Conread position:
               37-261
               

               Cow position:
               chr14:35605633-35605413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 130
               

               Conread position:
               37-263
               

               Cow position:
               chr14:47880436-47880224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               121, 56
               

               Conread position:
               37-264
               

               Cow position:
               chr14:15011792-15011561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               177
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               144, 70
               

               Conread position:
               37-264
               

               Cow position:
               chr14:30021171-30020944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 186
               

               Conread position:
               37-264
               

               Cow position:
               chr14:37983721-37983500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               173
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               102, 14
               

               Conread position:
               37-264
               

               Cow position:
               chr14:42693328-42693551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 96
               

               Conread position:
               37-264
               

               Cow position:
               chr14:44886233-44886452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               19, 80
               

               Conread position:
               39-261
               

               Cow position:
               chr14:27579097-27578888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               39-264
               

               Cow position:
               chr14:24783473-24783249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               179
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               83, 48
               

               Conread position:
               39-264
               

               Cow position:
               chr14:31810325-31810546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               174
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               107, 42
               

               Conread position:
               39-266
               

               Cow position:
               chr14:28007291-28007520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               15, 87
               

               Conread position:
               39-268
               

               Cow position:
               chr14:32509555-32509777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               149, 48
               

               Conread position:
               40-262
               

               Cow position:
               chr14:38000219-38000423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               40-268
               

               Cow position:
               chr14:44454129-44454366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               115, 0
               

               Conread position:
               42-193
               

               Cow position:
               chr14:48415382-48415533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               89, 145
               

               Conread position:
               46-237
               

               Cow position:
               chr14:44771945-44772122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               138
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               47-264
               

               Cow position:
               chr14:41712707-41712921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               146, 77
               

               Conread position:
               56-262
               

               Cow position:
               chr14:50650239-50650438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               137, 41
               

               Conread position:
               63-193
               

               Cow position:
               chr14:1314452-1314579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               122, 64
               

               Conread position:
               63-261
               

               Cow position:
               chr14:35683152-35682956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               70, 64
               

               Conread position:
               66-262
               

               Cow position:
               chr14:19339974-19339776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               67-264
               

               Cow position:
               chr14:36419876-36419675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               109, 56
               

               Conread position:
               72-193
               

               Cow position:
               chr14:15662328-15662207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               101
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               71, 111
               

               Conread position:
               75-264
               

               Cow position:
               chr14:40243891-40244075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               151
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               78-221
               

               Cow position:
               chr14:7863783-7863931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               112
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               47, 75
               

               Conread position:
               78-264
               

               Cow position:
               chr14:14835417-14835232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               7-264
               

               Cow position:
               chr15:50243373-50243120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               6, 70
               

               Conread position:
               18-183
               

               Cow position:
               chr15:19813453-19813610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               18-264
               

               Cow position:
               chr15:23265831-23265589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               189
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               122, 18
               

               Conread position:
               23-264
               

               Cow position:
               chr15:37469927-37470162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               123, 14
               

               Conread position:
               30-264
               

               Cow position:
               chr15:11997788-11997540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               188
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               8, 206
               

               Conread position:
               32-200
               

               Cow position:
               chr15:45665670-45665501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               123
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               111, 98
               

               Conread position:
               34-193
               

               Cow position:
               chr15:17288901-17288743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               118
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               92, 33
               

               Conread position:
               37-172
               

               Cow position:
               chr15:35042407-35042276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               107
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               104, 44
               

               Conread position:
               37-173
               

               Cow position:
               chr15:1888103-1887968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               116
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               37-191
               

               Cow position:
               chr15:14810900-14811055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               121
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               137, 0
               

               Conread position:
               37-191
               

               Cow position:
               chr15:26755066-26754909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               118
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               88, 33
               

               Conread position:
               37-191
               

               Cow position:
               chr15:35739927-35739773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               117
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               20, 92
               

               Conread position:
               37-201
               

               Cow position:
               chr15:43233068-43233235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               88, 21
               

               Conread position:
               37-204
               

               Cow position:
               chr15:14974081-14974249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               65, 136
               

               Conread position:
               37-206
               

               Cow position:
               chr15:32325375-32325545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               123
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               101, 66
               

               Conread position:
               37-219
               

               Cow position:
               chr15:12048709-12048894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               146, 93
               

               Conread position:
               37-235
               

               Cow position:
               chr15:579085-578881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               43, 89
               

               Conread position:
               37-264
               

               Cow position:
               chr15:25683724-25683495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               37-264
               

               Cow position:
               chr15:37491671-37491890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               192, 61
               

               Conread position:
               37-266
               

               Cow position:
               chr15:9072726-9072495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 94
               

               Conread position:
               38-264
               

               Cow position:
               chr15:27971749-27971973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               99, 33
               

               Conread position:
               39-264
               

               Cow position:
               chr15:53712862-53712643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               125, 18
               

               Conread position:
               41-264
               

               Cow position:
               chr15:18403961-18403740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               31, 64
               

               Conread position:
               42-264
               

               Cow position:
               chr15:6523417-6523630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               106, 32
               

               Conread position:
               45-193
               

               Cow position:
               chr15:2437134-2436989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               93, 11
               

               Conread position:
               45-261
               

               Cow position:
               chr15:53728256-53728468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               53-191
               

               Cow position:
               chr15:26365429-26365297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               124, 75
               

               Conread position:
               53-198
               

               Cow position:
               chr15:5912437-5912583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               81, 74
               

               Conread position:
               53-275
               

               Cow position:
               chr15:31917970-31918177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               60-190
               

               Cow position:
               chr15:11287467-11287592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               106
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               62, 7
               

               Conread position:
               64-264
               

               Cow position:
               chr15:37633370-37633158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               74, 14
               

               Conread position:
               73-260
               

               Cow position:
               chr15:17642203-17642014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               58, 98
               

               Conread position:
               85-238
               

               Cow position:
               chr15:1992772-1992622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               61, 97
               

               Conread position:
               105-259
               

               Cow position:
               chr15:40065907-40065748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               32, 22
               

               Conread position:
               156-266
               

               Cow position:
               chr15:4623321-4623437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               117
               

               Alignm identity:
               96
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               1-264
               

               Cow position:
               chr16:5131366-5131617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               7-264
               

               Cow position:
               chr16:11161798-11161551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               6, 91
               

               Conread position:
               25-264
               

               Cow position:
               chr16:43850460-43850690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               185
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               13, 100
               

               Conread position:
               36-187
               

               Cow position:
               chr16:17003800-17003648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               37-129
               

               Cow position:
               chr16:23878702-23878610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               93
               

               Alignm identity:
               80
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               37-191
               

               Cow position:
               chr16:6264940-6265097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               89, 64
               

               Conread position:
               37-191
               

               Cow position:
               chr16:45057766-45057611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               119
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               104, 0
               

               Conread position:
               37-192
               

               Cow position:
               chr16:42709085-42709242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               104, 0
               

               Conread position:
               37-208
               

               Cow position:
               chr16:48894464-48894629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               37-225
               

               Cow position:
               chr16:32352198-32352005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               41, 13
               

               Conread position:
               37-234
               

               Cow position:
               chr16:29204692-29204884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               160
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               100, 31
               

               Conread position:
               37-247
               

               Cow position:
               chr16:12243187-12243411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               65, 10
               

               Conread position:
               37-248
               

               Cow position:
               chr16:53516272-53516482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               150
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               88, 66
               

               Conread position:
               37-262
               

               Cow position:
               chr16:47781652-47781436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               37-264
               

               Cow position:
               chr16:14444268-14444050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               37-264
               

               Cow position:
               chr16:14799380-14799607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               172
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               37-264
               

               Cow position:
               chr16:16118814-16118595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               109, 53
               

               Conread position:
               37-264
               

               Cow position:
               chr16:17867127-17867346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               37-264
               

               Cow position:
               chr16:23034938-23035161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 91
               

               Conread position:
               37-264
               

               Cow position:
               chr16:31374815-31375038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               175
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               100, 40
               

               Conread position:
               37-264
               

               Cow position:
               chr16:41680405-41680629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 57
               

               Conread position:
               37-264
               

               Cow position:
               chr16:47391395-47391181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               37-279
               

               Cow position:
               chr16:42406218-42405976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               140, 88
               

               Conread position:
               38-193
               

               Cow position:
               chr16:12473678-12473523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               122
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               104, 31
               

               Conread position:
               38-264
               

               Cow position:
               chr16:4295160-4295387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               154, 0
               

               Conread position:
               39-146
               

               Cow position:
               chr16:2371441-2371548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               108
               

               Alignm identity:
               89
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               39-191
               

               Cow position:
               chr16:16608169-16608018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               146, 136
               

               Conread position:
               39-249
               

               Cow position:
               chr16:30572273-30572476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               182, 95
               

               Conread position:
               39-267
               

               Cow position:
               chr16:13044202-13043957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               40-264
               

               Cow position:
               chr16:15509290-15509070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               82, 88
               

               Conread position:
               44-189
               

               Cow position:
               chr16:55910018-55910167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               112
               

               Alignm E-value:
               9e-23
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               53-264
               

               Cow position:
               chr16:22785692-22785904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               165
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               82, 74
               

               Conread position:
               56-241
               

               Cow position:
               chr16:6031301-6031480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               58-171
               

               Cow position:
               chr16:9703273-9703387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               94
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               64-260
               

               Cow position:
               chr16:19153043-19152844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               162
               

               Alignm E-value:
               8.96831e-44
               

               Alignm gaps (pig, cow):
               76, 61
               

               Conread position:
               72-264
               

               Cow position:
               chr16:36910710-36910905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               159
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               71, 9
               

               Conread position:
               74-264
               

               Cow position:
               chr16:2731820-2732002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               145
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               80-264
               

               Cow position:
               chr16:4856167-4856354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               60, 19
               

               Conread position:
               87-264
               

               Cow position:
               chr16:37441818-37441991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               56, 127
               

               Conread position:
               88-264
               

               Cow position:
               chr16:56373937-56374120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               54, 33
               

               Conread position:
               89-241
               

               Cow position:
               chr16:341564-341407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               38, 10
               

               Conread position:
               101-264
               

               Cow position:
               chr16:15734869-15734711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               45, 75
               

               Conread position:
               25-172
               

               Cow position:
               chr17:67604-67754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               114
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               13, 71
               

               Conread position:
               25-191
               

               Cow position:
               chr17:35458028-35457866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               13, 98
               

               Conread position:
               25-193
               

               Cow position:
               chr17:40391555-40391724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               120
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               104, 76
               

               Conread position:
               28-264
               

               Cow position:
               chr17:701801-701583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               168
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               31-192
               

               Cow position:
               chr17:31923616-31923773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               118
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               108, 72
               

               Conread position:
               36-193
               

               Cow position:
               chr17:26175033-26174876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               107, 57
               

               Conread position:
               37-184
               

               Cow position:
               chr17:27622509-27622658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               11, 65
               

               Conread position:
               37-190
               

               Cow position:
               chr17:12842661-12842503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               116
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               37-264
               

               Cow position:
               chr17:20208412-20208647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               183
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               109, 210
               

               Conread position:
               37-264
               

               Cow position:
               chr17:24609230-24608998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               104, 73
               

               Conread position:
               37-278
               

               Cow position:
               chr17:28847251-28847499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               186
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               39-173
               

               Cow position:
               chr17:7211016-7210887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               109
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               104, 45
               

               Conread position:
               39-264
               

               Cow position:
               chr17:25117365-25117145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               103, 70
               

               Conread position:
               39-264
               

               Cow position:
               chr17:32451267-32451493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 17
               

               Conread position:
               41-256
               

               Cow position:
               chr17:2736111-2735888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               160
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               92, 36
               

               Conread position:
               56-191
               

               Cow position:
               chr17:18417860-18417997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               113
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               65-244
               

               Cow position:
               chr17:13236325-13236503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               146
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               33, 68
               

               Conread position:
               73-193
               

               Cow position:
               chr17:6980386-6980506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               99
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               67, 7
               

               Conread position:
               82-187
               

               Cow position:
               chr17:30180613-30180509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               106
               

               Alignm identity:
               87
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               82-187
               

               Cow position:
               chr17:30180969-30180865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               106
               

               Alignm identity:
               87
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               84-187
               

               Cow position:
               chr17:30181323-30181221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               104
               

               Alignm identity:
               85
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               145-264
               

               Cow position:
               chr17:403907-403794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               98
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               2-264
               

               Cow position:
               chr18:27405274-27405001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               2-264
               

               Cow position:
               chr18:35471422-35471696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               42, 202
               

               Conread position:
               31-191
               

               Cow position:
               chr18:37493391-37493230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               119
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               37-134
               

               Cow position:
               chr18:53047729-53047825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               98
               

               Alignm identity:
               83
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               37-174
               

               Cow position:
               chr18:14804371-14804504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               107
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               106, 42
               

               Conread position:
               37-183
               

               Cow position:
               chr18:26667468-26667334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               37-193
               

               Cow position:
               chr18:33896167-33896010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               122
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               104, 0
               

               Conread position:
               37-205
               

               Cow position:
               chr18:21290446-21290611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               106, 64
               

               Conread position:
               37-256
               

               Cow position:
               chr18:25846707-25846909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               94, 62
               

               Conread position:
               37-264
               

               Cow position:
               chr18:1700916-1700699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               176
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               86, 102
               

               Conread position:
               37-264
               

               Cow position:
               chr18:22433462-22433682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               108, 35
               

               Conread position:
               37-264
               

               Cow position:
               chr18:23316448-23316665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               71, 87
               

               Conread position:
               37-264
               

               Cow position:
               chr18:28085901-28085678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               106, 44
               

               Conread position:
               37-264
               

               Cow position:
               chr18:53029042-53028809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               86, 23
               

               Conread position:
               38-266
               

               Cow position:
               chr18:14480759-14480527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               104, 38
               

               Conread position:
               39-260
               

               Cow position:
               chr18:32860973-32860763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               173
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               40-256
               

               Cow position:
               chr18:23504268-23504487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               86, 55
               

               Conread position:
               41-237
               

               Cow position:
               chr18:16259585-16259394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               99, 126
               

               Conread position:
               42-264
               

               Cow position:
               chr18:39474953-39475153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               96, 24
               

               Conread position:
               45-192
               

               Cow position:
               chr18:17227938-17228086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               47-196
               

               Cow position:
               chr18:33610217-33610063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               53-191
               

               Cow position:
               chr18:50880793-50880657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               87, 60
               

               Conread position:
               56-209
               

               Cow position:
               chr18:39468561-39468709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               89, 11
               

               Conread position:
               64-264
               

               Cow position:
               chr18:8170487-8170285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               64-264
               

               Cow position:
               chr18:48550288-48550085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               161
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               75-190
               

               Cow position:
               chr18:5060263-5060378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               117
               

               Alignm identity:
               92
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               57, 25
               

               Conread position:
               98-264
               

               Cow position:
               chr18:8204797-8204636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               1-275
               

               Cow position:
               chr19:30051601-30051888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               203
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               43, 22
               

               Conread position:
               23-223
               

               Cow position:
               chr19:425914-426109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               60, 15
               

               Conread position:
               35-193
               

               Cow position:
               chr19:51070526-51070685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               125
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               110, 92
               

               Conread position:
               37-192
               

               Cow position:
               chr19:43806138-43806291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               66, 91
               

               Conread position:
               37-193
               

               Cow position:
               chr19:12107510-12107349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               117
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               37-199
               

               Cow position:
               chr19:30188439-30188600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               135
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               88, 104
               

               Conread position:
               37-264
               

               Cow position:
               chr19:17439733-17439957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               31, 24
               

               Conread position:
               37-264
               

               Cow position:
               chr19:25846664-25846456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               37-264
               

               Cow position:
               chr19:30349875-30350094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               94, 141
               

               Conread position:
               37-264
               

               Cow position:
               chr19:30746762-30746536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 75
               

               Conread position:
               37-264
               

               Cow position:
               chr19:33284945-33285174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 90
               

               Conread position:
               39-183
               

               Cow position:
               chr19:28560465-28560618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               39-192
               

               Cow position:
               chr19:4600855-4600705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               39-264
               

               Cow position:
               chr19:3082422-3082207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               108, 24
               

               Conread position:
               44-192
               

               Cow position:
               chr19:10112842-10112693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               112
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               94, 81
               

               Conread position:
               45-193
               

               Cow position:
               chr19:49484095-49483946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               46-240
               

               Cow position:
               chr19:30452194-30452382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               101, 30
               

               Conread position:
               56-248
               

               Cow position:
               chr19:35873632-35873832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               74, 183
               

               Conread position:
               57-196
               

               Cow position:
               chr19:42162944-42163076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               108
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               62-267
               

               Cow position:
               chr19:4610173-4609985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               78-264
               

               Cow position:
               chr19:20700400-20700210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               1-130
               

               Cow position:
               chr2:23811531-23811401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               21-264
               

               Cow position:
               chr2:74387744-74387989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               191
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               17, 106
               

               Conread position:
               21-307
               

               Cow position:
               chr2:72599199-72598906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               215
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               11, 98
               

               Conread position:
               25-193
               

               Cow position:
               chr2:65463182-65463352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               128
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               13, 102
               

               Conread position:
               33-264
               

               Cow position:
               chr2:47746594-47746364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               108, 44
               

               Conread position:
               34-264
               

               Cow position:
               chr2:7779113-7779356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               176
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               9, 51
               

               Conread position:
               35-266
               

               Cow position:
               chr2:24884361-24884130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               57, 97
               

               Conread position:
               37-192
               

               Cow position:
               chr2:9043562-9043403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               125
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               37-193
               

               Cow position:
               chr2:717443-717597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               37-205
               

               Cow position:
               chr2:16123035-16123201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               122
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               149, 0
               

               Conread position:
               37-206
               

               Cow position:
               chr2:13048583-13048411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               143
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               37-262
               

               Cow position:
               chr2:21697356-21697590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               179
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               105, 90
               

               Conread position:
               37-264
               

               Cow position:
               chr2:33791119-33791340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               89, 36
               

               Conread position:
               37-264
               

               Cow position:
               chr2:43344929-43345152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               143, 0
               

               Conread position:
               37-264
               

               Cow position:
               chr2:53716623-53716841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               179
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               98, 14
               

               Conread position:
               37-264
               

               Cow position:
               chr2:62673884-62674099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               169
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               105, 93
               

               Conread position:
               37-264
               

               Cow position:
               chr2:64073920-64073685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 96
               

               Conread position:
               37-264
               

               Cow position:
               chr2:77968149-77968362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               37-269
               

               Cow position:
               chr2:18249519-18249746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               175
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               102, 66
               

               Conread position:
               38-191
               

               Cow position:
               chr2:4478155-4478003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               132, 95
               

               Conread position:
               38-264
               

               Cow position:
               chr2:39196410-39196638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               175
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               148, 31
               

               Conread position:
               39-184
               

               Cow position:
               chr2:32406069-32406212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               39-194
               

               Cow position:
               chr2:11340796-11340950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               58, 138
               

               Conread position:
               39-264
               

               Cow position:
               chr2:42286138-42286377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               142, 35
               

               Conread position:
               39-267
               

               Cow position:
               chr2:7212155-7211930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               104, 27
               

               Conread position:
               40-226
               

               Cow position:
               chr2:41163042-41162853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               99, 79
               

               Conread position:
               41-307
               

               Cow position:
               chr2:3296549-3296294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               199
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               234, 86
               

               Conread position:
               43-244
               

               Cow position:
               chr2:37003653-37003456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               159
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               93, 88
               

               Conread position:
               45-193
               

               Cow position:
               chr2:74848199-74848052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               117
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               24, 35
               

               Conread position:
               53-184
               

               Cow position:
               chr2:4927727-4927851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               104
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               56-172
               

               Cow position:
               chr2:19651721-19651603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               94
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               57-260
               

               Cow position:
               chr2:31490575-31490379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               126, 43
               

               Conread position:
               64-264
               

               Cow position:
               chr2:6820057-6820245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               68-187
               

               Cow position:
               chr2:41490966-41490849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               46, 65
               

               Conread position:
               73-264
               

               Cow position:
               chr2:71121355-71121162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               152
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               65, 12
               

               Conread position:
               80-264
               

               Cow position:
               chr2:14037390-14037572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               113, 56
               

               Conread position:
               81-264
               

               Cow position:
               chr2:32393727-32393546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               70, 148
               

               Conread position:
               81-264
               

               Cow position:
               chr2:76055237-76055418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               137
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               109, 7
               

               Conread position:
               101-264
               

               Cow position:
               chr2:27145055-27145221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               28-264
               

               Cow position:
               chr20:25991661-25991907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               10, 30
               

               Conread position:
               29-191
               

               Cow position:
               chr20:2858725-2858578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               32-264
               

               Cow position:
               chr20:36707055-36707278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               20, 5
               

               Conread position:
               35-264
               

               Cow position:
               chr20:22919765-22919991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               174
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               24, 13
               

               Conread position:
               37-192
               

               Cow position:
               chr20:14403735-14403578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               118
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               39, 85
               

               Conread position:
               37-218
               

               Cow position:
               chr20:5668376-5668564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               107
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               37-241
               

               Cow position:
               chr20:27844423-27844217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               137, 0
               

               Conread position:
               37-248
               

               Cow position:
               chr20:22420394-22420611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               149, 16
               

               Conread position:
               37-248
               

               Cow position:
               chr20:35249185-35249395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               64, 104
               

               Conread position:
               37-257
               

               Cow position:
               chr20:26993178-26992959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               170
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               101, 154
               

               Conread position:
               37-264
               

               Cow position:
               chr20:4851571-4851338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               97, 30
               

               Conread position:
               37-264
               

               Cow position:
               chr20:12119203-12119434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               174
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               103, 90
               

               Conread position:
               37-264
               

               Cow position:
               chr20:14864462-14864693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               147, 14
               

               Conread position:
               37-264
               

               Cow position:
               chr20:17474369-17474602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               180
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               86, 111
               

               Conread position:
               37-264
               

               Cow position:
               chr20:25294011-25293778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               81, 39
               

               Conread position:
               39-267
               

               Cow position:
               chr20:13588753-13588984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               169
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               76, 183
               

               Conread position:
               40-264
               

               Cow position:
               chr20:24280373-24280153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               172
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               105, 63
               

               Conread position:
               41-264
               

               Cow position:
               chr20:16585228-16585454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               178
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               101, 75
               

               Conread position:
               46-173
               

               Cow position:
               chr20:9918862-9918734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               104
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               89, 81
               

               Conread position:
               47-193
               

               Cow position:
               chr20:13790390-13790242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               47-261
               

               Cow position:
               chr20:31563577-31563788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               66, 12
               

               Conread position:
               54-257
               

               Cow position:
               chr20:10722716-10722525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               58-264
               

               Cow position:
               chr20:27977320-27977527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               159
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               61-191
               

               Cow position:
               chr20:21403448-21403315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               77-264
               

               Cow position:
               chr20:15147619-15147807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               95-266
               

               Cow position:
               chr20:23422051-23422220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               130
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               117-264
               

               Cow position:
               chr20:20350666-20350808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               26, 10
               

               Conread position:
               1-262
               

               Cow position:
               chr21:16166179-16166438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               139, 34
               

               Conread position:
               7-194
               

               Cow position:
               chr21:26742038-26742234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               6, 129
               

               Conread position:
               25-194
               

               Cow position:
               chr21:20575329-20575502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               13, 95
               

               Conread position:
               25-264
               

               Cow position:
               chr21:15543513-15543751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               187
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               13, 36
               

               Conread position:
               37-183
               

               Cow position:
               chr21:9976592-9976447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               110
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               37-184
               

               Cow position:
               chr21:6667624-6667475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               108, 90
               

               Conread position:
               37-187
               

               Cow position:
               chr21:30859477-30859325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               112
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               37-192
               

               Cow position:
               chr21:27089696-27089849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               103, 26
               

               Conread position:
               37-208
               

               Cow position:
               chr21:29943330-29943161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               136, 44
               

               Conread position:
               37-220
               

               Cow position:
               chr21:45962822-45962639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               101, 90
               

               Conread position:
               37-223
               

               Cow position:
               chr21:22941798-22941621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               152, 88
               

               Conread position:
               37-240
               

               Cow position:
               chr21:45448009-45447816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               37-261
               

               Cow position:
               chr21:39766260-39766033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               64, 153
               

               Conread position:
               37-264
               

               Cow position:
               chr21:23399372-23399157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               180
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               101, 44
               

               Conread position:
               37-264
               

               Cow position:
               chr21:24972183-24972404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               178
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               106, 65
               

               Conread position:
               37-267
               

               Cow position:
               chr21:8273113-8273353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               189
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               104, 64
               

               Conread position:
               37-289
               

               Cow position:
               chr21:7724536-7724772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               108, 7
               

               Conread position:
               38-196
               

               Cow position:
               chr21:37341733-37341889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               115
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               39-194
               

               Cow position:
               chr21:32813716-32813872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               39-253
               

               Cow position:
               chr21:37356091-37355885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               170
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               152, 79
               

               Conread position:
               39-264
               

               Cow position:
               chr21:25019290-25019066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 14
               

               Conread position:
               46-264
               

               Cow position:
               chr21:1991698-1991482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               165
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               59-256
               

               Cow position:
               chr21:6280696-6280502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               132, 59
               

               Conread position:
               60-256
               

               Cow position:
               chr21:5597555-5597364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               65-260
               

               Cow position:
               chr21:26632060-26632252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               157
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               75, 98
               

               Conread position:
               78-257
               

               Cow position:
               chr21:33974887-33974700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               141
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               53, 148
               

               Conread position:
               81-239
               

               Cow position:
               chr21:37941110-37941272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               130
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               3-187
               

               Cow position:
               chr22:24595945-24596127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               169, 34
               

               Conread position:
               25-214
               

               Cow position:
               chr22:29064704-29064511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               13, 28
               

               Conread position:
               37-132
               

               Cow position:
               chr22:41321656-41321561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               96
               

               Alignm identity:
               84
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               37-165
               

               Cow position:
               chr22:15890264-15890136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               97
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               37-179
               

               Cow position:
               chr22:5714946-5715085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               37-191
               

               Cow position:
               chr22:8714226-8714076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               103, 79
               

               Conread position:
               37-193
               

               Cow position:
               chr22:6014094-6014250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               104, 64
               

               Conread position:
               37-193
               

               Cow position:
               chr22:40853498-40853347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               118
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               119, 40
               

               Conread position:
               37-212
               

               Cow position:
               chr22:39904469-39904638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               89, 44
               

               Conread position:
               37-262
               

               Cow position:
               chr22:28755144-28755365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               135, 99
               

               Conread position:
               37-262
               

               Cow position:
               chr22:32018273-32018495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               181
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               101, 54
               

               Conread position:
               37-263
               

               Cow position:
               chr22:25458204-25457979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               60, 152
               

               Conread position:
               37-264
               

               Cow position:
               chr22:7281574-7281350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               176
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               105, 17
               

               Conread position:
               37-264
               

               Cow position:
               chr22:29005233-29005467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               25, 65
               

               Conread position:
               38-264
               

               Cow position:
               chr22:4058136-4057910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 89
               

               Conread position:
               39-264
               

               Cow position:
               chr22:14508233-14508451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               39-264
               

               Cow position:
               chr22:15696524-15696290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               179
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               64, 143
               

               Conread position:
               39-284
               

               Cow position:
               chr22:44637932-44637688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               186
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               107, 43
               

               Conread position:
               41-256
               

               Cow position:
               chr22:45291867-45291648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               173
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               90, 147
               

               Conread position:
               67-253
               

               Cow position:
               chr22:23680271-23680080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               67-264
               

               Cow position:
               chr22:12628172-12628362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               40, 0
               
69-191UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr22:34649553-34649427 (view  custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               100
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               6, 0
               
73-261UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr22:45496900-45496716 (view  custom track)

               
               
               
Alignm length: 195

               
               
               
Alignm identity: 141

               
               
               
Alignm E-value: 2e-21

               
               
               
Alignm gaps (pig, cow): 52, 12
85-262UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr22:609615-609797 (view  custom track)

               
               
               
Alignm length: 186

               
               
               
Alignm identity: 133

               
               
               
Alignm E-value: 6e-21

               
               
               
Alignm gaps (pig, cow): 97, 42

               
               
               Conread position:1-264
               
               
               Cow position:chr23:25078790-25079045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):234, 23

               
               
               Conread position:8-264
               
               
               Cow position:chr23:24400799-24401068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):138, 11

               
               
               Conread position:26-264
               
               
               Cow position:chr23:36674394-36674630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):62, 19

               
               
               Conread position:35-264
               
               
               Cow position:chr23:16171077-16170849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 147

               
               
               Conread position:37-213
               
               
               Cow position:chr23:38026321-38026495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):145, 38

               
               
               Conread position:37-224
               
               
               Cow position:chr23:9546754-9546556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:37-241
               
               
               Cow position:chr23:23917236-23917035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:161
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):101, 23

               
               
               Conread position:37-256
               
               
               Cow position:chr23:25409186-25408972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):89, 79

               
               
               Conread position:37-264
               
               
               Cow position:chr23:5265152-5265372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):105, 40

               
               
               Conread position:37-264
               
               
               Cow position:chr23:7253447-7253225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:37-267
               
               
               Cow position:chr23:30572455-30572678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):98, 33

               
               
               Conread position:37-269
               
               
               Cow position:chr23:39069858-39070084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):220, 45

               
               
               Conread position:37-306
               
               
               Cow position:chr23:30127594-30127868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):62, 224

               
               
               Conread position:38-229
               
               
               Cow position:chr23:6963987-6964169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):91, 29

               
               
               Conread position:38-264
               
               
               Cow position:chr23:20217245-20217017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):85, 165

               
               
               Conread position:40-148
               
               
               Cow position:chr23:16479546-16479654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:45-192
               
               
               Cow position:chr23:22582925-22582776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:1-264
               
               
               Cow position:chr24:19961121-19961403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):41, 22

               
               
               Conread position:1-264
               
               
               Cow position:chr24:35835642-35835903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):23, 181

               
               
               Conread position:3-264
               
               
               Cow position:chr24:6177782-6177511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):21, 195

               
               
               Conread position:33-232
               
               
               Cow position:chr24:29515779-29515981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:33-264
               
               
               Cow position:chr24:43350756-43350982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):110, 45

               
               
               Conread position:37-195
               
               
               Cow position:chr24:22839268-22839425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 91

               
               
               Conread position:37-241
               
               
               Cow position:chr24:15475028-15474831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:160
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:37-246
               
               
               Cow position:chr24:32579520-32579312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:167
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):105, 19

               
               
               Conread position:37-264
               
               
               Cow position:chr24:6423722-6423941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):94, 42

               
               
               Conread position:37-264
               
               
               Cow position:chr24:7039099-7038872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):103, 85

               
               
               Conread position:37-264
               
               
               Cow position:chr24:17762928-17763148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:37-264
               
               
               Cow position:chr24:25246377-25246150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):101, 40

               
               
               Conread position:37-264
               
               
               Cow position:chr24:25343398-25343171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):109, 40

               
               
               Conread position:37-264
               
               
               Cow position:chr24:36551019-36551241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:37-290
               
               
               Cow position:chr24:38643962-38643705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 133

               
               
               Conread position:38-264
               
               
               Cow position:chr24:14913238-14913451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):102, 13

               
               
               Conread position:39-264
               
               
               Cow position:chr24:41404992-41405204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:41-264
               
               
               Cow position:chr24:42817597-42817375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):106, 56

               
               
               Conread position:43-243
               
               
               Cow position:chr24:17417424-17417214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:56-264
               
               
               Cow position:chr24:25934723-25934520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:57-264
               
               
               Cow position:chr24:43492195-43492393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:63-264
               
               
               Cow position:chr24:31301358-31301544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:72-264
               
               
               Cow position:chr24:19627635-19627445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:74-290
               
               
               Cow position:chr24:12234006-12234213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):69, 56

               
               
               Conread position:80-264
               
               
               Cow position:chr24:1296758-1296942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):59, 45

               
               
               Conread position:144-264
               
               
               Cow position:chr24:36853561-36853437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-264
               
               
               Cow position:chr25:36235450-36235680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):13, 56

               
               
               Conread position:37-193
               
               
               Cow position:chr25:16940503-16940656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):105, 40

               
               
               Conread position:37-229
               
               
               Cow position:chr25:13704369-13704175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):99, 66

               
               
               Conread position:37-242
               
               
               Cow position:chr25:23014518-23014315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:37-264
               
               
               Cow position:chr25:5567394-5567626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:37-264
               
               
               Cow position:chr25:18205946-18206166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 41

               
               
               Conread position:37-264
               
               
               Cow position:chr25:38358454-38358214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:39-187
               
               
               Cow position:chr25:17473018-17472875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:39-214
               
               
               Cow position:chr25:19686395-19686568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):50, 144

               
               
               Conread position:39-238
               
               
               Cow position:chr25:16193173-16193372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):38, 92

               
               
               Conread position:39-242
               
               
               Cow position:chr25:13123574-13123368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):96, 86

               
               
               Conread position:43-303
               
               
               Cow position:chr25:33925057-33924795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):54, 60

               
               
               Conread position:54-194
               
               
               Cow position:chr25:34670515-34670373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):77, 40

               
               
               Conread position:87-263
               
               
               Cow position:chr25:18643753-18643936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:97-261
               
               
               Cow position:chr25:16482064-16481910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:107-268
               
               
               Cow position:chr25:35038346-35038503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):24, 19

               
               
               Conread position:128-264
               
               
               Cow position:chr25:14279533-14279402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:16-248
               
               
               Cow position:chr26:19493165-19492932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):13, 30

               
               
               Conread position:20-234
               
               
               Cow position:chr26:30011426-30011624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):10, 102

               
               
               Conread position:37-260
               
               
               Cow position:chr26:4559878-4560092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:37-264
               
               
               Cow position:chr26:15632852-15632642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:37-264
               
               
               Cow position:chr26:16214634-16214411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):99, 140

               
               
               Conread position:37-264
               
               
               Cow position:chr26:30602737-30602950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):89, 97

               
               
               Conread position:41-264
               
               
               Cow position:chr26:28421386-28421606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):69, 18

               
               
               Conread position:42-229
               
               
               Cow position:chr26:21013732-21013556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:44-190
               
               
               Cow position:chr26:16510868-16510720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):87, 77

               
               
               Conread position:46-201
               
               
               Cow position:chr26:19791044-19791199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:46-267
               
               
               Cow position:chr26:4663714-4663937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):91, 30

               
               
               Conread position:47-264
               
               
               Cow position:chr26:14509488-14509696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):95, 22

               
               
               Conread position:48-173
               
               
               Cow position:chr26:3311534-3311660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:73-264
               
               
               Cow position:chr26:22161509-22161707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:99-278
               
               
               Cow position:chr26:12871715-12871540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 93

               
               
               Conread position:102-294
               
               
               Cow position:chr26:34089994-34089808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):40, 88

               
               
               Conread position:23-263
               
               
               Cow position:chr27:11935281-11935521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 57

               
               
               Conread position:37-179
               
               
               Cow position:chr27:26653197-26653337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:37-183
               
               
               Cow position:chr27:13861001-13860851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):49, 99

               
               
               Conread position:37-198
               
               
               Cow position:chr27:2246586-2246748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):64, 141

               
               
               Conread position:37-201
               
               
               Cow position:chr27:11755880-11755715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):145, 56

               
               
               Conread position:37-256
               
               
               Cow position:chr27:31376297-31376517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):91, 73

               
               
               Conread position:37-263
               
               
               Cow position:chr27:9261418-9261646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):155, 14

               
               
               Conread position:37-264
               
               
               Cow position:chr27:3935104-3934866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:37-267
               
               
               Cow position:chr27:30889296-30889072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):72, 91

               
               
               Conread position:39-187
               
               
               Cow position:chr27:23073891-23074039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:67-193
               
               
               Cow position:chr27:3704836-3704711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):69, 54

               
               
               Conread position:1-256
               
               
               Cow position:chr28:22361050-22360790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):25, 186

               
               
               Conread position:1-264
               
               
               Cow position:chr28:22855695-22855433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):41, 72

               
               
               Conread position:25-256
               
               
               Cow position:chr28:11379414-11379659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):13, 215

               
               
               Conread position:36-176
               
               
               Cow position:chr28:31994284-31994423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):124, 83

               
               
               Conread position:37-193
               
               
               Cow position:chr28:480356-480515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):103, 13

               
               
               Conread position:37-198
               
               
               Cow position:chr28:6355442-6355279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):100, 91

               
               
               Conread position:37-264
               
               
               Cow position:chr28:23390710-23390474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):65, 89

               
               
               Conread position:37-264
               
               
               Cow position:chr28:34117456-34117232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):109, 54

               
               
               Conread position:37-267
               
               
               Cow position:chr28:22614279-22614055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):74, 35

               
               
               Conread position:37-267
               
               
               Cow position:chr28:28630942-28630715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 29

               
               
               Conread position:38-269
               
               
               Cow position:chr28:15349826-15349599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 39

               
               
               Conread position:39-193
               
               
               Cow position:chr28:25315241-25315089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):108, 45

               
               
               Conread position:39-264
               
               
               Cow position:chr28:2340902-2340680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):102, 39

               
               
               Conread position:42-197
               
               
               Cow position:chr28:32284636-32284789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):96, 88

               
               
               Conread position:47-249
               
               
               Cow position:chr28:26626817-26627012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):179, 66

               
               
               Conread position:47-264
               
               
               Cow position:chr28:22830284-22830068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 101

               
               
               Conread position:66-264
               
               
               Cow position:chr28:7607572-7607376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):65, 117

               
               
               Conread position:77-256
               
               
               Cow position:chr28:34346925-34347101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):52, 100

               
               
               Conread position:101-298
               
               
               Cow position:chr28:15914944-15915137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):45, 25

               
               
               Conread position:137-264
               
               
               Cow position:chr28:6277278-6277407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):44, 88

               
               
               Conread position:1-264
               
               
               Cow position:chr29:13040130-13040401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:12-193
               
               
               Cow position:chr29:3822938-3822746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):40, 32

               
               
               Conread position:13-264
               
               
               Cow position:chr29:8906921-8906668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):15, 62

               
               
               Conread position:19-264
               
               
               Cow position:chr29:22454447-22454689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:25-184
               
               
               Cow position:chr29:7959445-7959606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:25-237
               
               
               Cow position:chr29:3346342-3346129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):110, 22

               
               
               Conread position:27-226
               
               
               Cow position:chr29:42269293-42269099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):19, 75

               
               
               Conread position:31-260
               
               
               Cow position:chr29:4458962-4458732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):103, 96

               
               
               Conread position:37-165
               
               
               Cow position:chr29:9339674-9339549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:37-186
               
               
               Cow position:chr29:8890899-8891043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):99, 13

               
               
               Conread position:37-186
               
               
               Cow position:chr29:15919923-15919775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):92, 45

               
               
               Conread position:37-193
               
               
               Cow position:chr29:28950152-28949996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):106, 93

               
               
               Conread position:37-248
               
               
               Cow position:chr29:28115451-28115232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):91, 51

               
               
               Conread position:37-264
               
               
               Cow position:chr29:7738333-7738559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):99, 48

               
               
               Conread position:39-168
               
               
               Cow position:chr29:34330879-34331009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:39-261
               
               
               Cow position:chr29:21198279-21198510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:177
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:40-264
               
               
               Cow position:chr29:18338178-18338406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):97, 39

               
               
               Conread position:40-297
               
               
               Cow position:chr29:30813802-30813549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 0

               
               
               Conread position:41-264
               
               
               Cow position:chr29:2480986-2481203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 24

               
               
               Conread position:41-264
               
               
               Cow position:chr29:16359984-16359758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:178
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):99, 52

               
               
               Conread position:42-264
               
               
               Cow position:chr29:37208122-37207899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:52-192
               
               
               Cow position:chr29:8685380-8685239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:56-257
               
               
               Cow position:chr29:35037079-35036872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):70, 109

               
               
               Conread position:22-264
               
               
               Cow position:chr3:16115923-16115692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 83

               
               
               Conread position:25-191
               
               
               Cow position:chr3:8753810-8753636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:147
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:25-206
               
               
               Cow position:chr3:84153654-84153468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:34-173
               
               
               Cow position:chr3:74846390-74846530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:35-260
               
               
               Cow position:chr3:27633672-27633895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):44, 85

               
               
               Conread position:37-131
               
               
               Cow position:chr3:56164096-56164001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:82
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:37-174
               
               
               Cow position:chr3:60947861-60947997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:37-183
               
               
               Cow position:chr3:65392392-65392244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):94, 37

               
               
               Conread position:37-193
               
               
               Cow position:chr3:55896942-55896787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):149, 96

               
               
               Conread position:37-204
               
               
               Cow position:chr3:46134856-46135030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:37-208
               
               
               Cow position:chr3:17519459-17519635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 153

               
               
               Conread position:37-209
               
               
               Cow position:chr3:23274637-23274812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):86, 14

               
               
               Conread position:37-225
               
               
               Cow position:chr3:43967081-43967273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):23, 91

               
               
               Conread position:37-248
               
               
               Cow position:chr3:36538590-36538811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:37-260
               
               
               Cow position:chr3:23478562-23478346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):52, 93

               
               
               Conread position:37-260
               
               
               Cow position:chr3:56711301-56711534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 94

               
               
               Conread position:37-264
               
               
               Cow position:chr3:77157651-77157442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:37-269
               
               
               Cow position:chr3:77468286-77468060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):108, 48

               
               
               Conread position:38-187
               
               
               Cow position:chr3:79315511-79315363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:38-252
               
               
               Cow position:chr3:27879648-27879870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):97, 38

               
               
               Conread position:39-191
               
               
               Cow position:chr3:39273398-39273549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):121, 98

               
               
               Conread position:39-264
               
               
               Cow position:chr3:56042391-56042611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):104, 37

               
               
               Conread position:39-267
               
               
               Cow position:chr3:32773526-32773314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:40-269
               
               
               Cow position:chr3:21332476-21332695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:41-283
               
               
               Cow position:chr3:24532144-24531918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):97, 86

               
               
               Conread position:43-263
               
               
               Cow position:chr3:8275771-8275553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):174, 84

               
               
               Conread position:44-193
               
               
               Cow position:chr3:40269229-40269375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):142, 57

               
               
               Conread position:44-261
               
               
               Cow position:chr3:26581746-26581953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):63, 83

               
               
               Conread position:46-191
               
               
               Cow position:chr3:23888068-23887919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:46-192
               
               
               Cow position:chr3:26531805-26531950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:46-192
               
               
               Cow position:chr3:31924586-31924732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:49-267
               
               
               Cow position:chr3:55460174-55460387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):91, 104

               
               
               Conread position:51-193
               
               
               Cow position:chr3:50499900-50499758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-264
               
               
               Cow position:chr3:1549600-1549394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):73, 39

               
               
               Conread position:80-256
               
               
               Cow position:chr3:85086154-85085978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):60, 26

               
               
               Conread position:80-264
               
               
               Cow position:chr3:80928637-80928827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):65, 50

               
               
               Conread position:92-263
               
               
               Cow position:chr3:35051313-35051146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):50, 31

               
               
               Conread position:131-269
               
               
               Cow position:chr3:69148567-69148697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:5-268
               
               
               Cow position:chr4:17176530-17176276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:8-213
               
               
               Cow position:chr4:60639817-60640029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:8-246
               
               
               Cow position:chr4:60662792-60662547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:16-264
               
               
               Cow position:chr4:29222144-29222392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):94, 128

               
               
               Conread position:21-264
               
               
               Cow position:chr4:29067270-29067513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 108

               
               
               Conread position:25-193
               
               
               Cow position:chr4:26747886-26748055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 95

               
               
               Conread position:25-264
               
               
               Cow position:chr4:47511390-47511153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):13, 138

               
               
               Conread position:29-241
               
               
               Cow position:chr4:2237877-2238090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):53, 100

               
               
               Conread position:36-264
               
               
               Cow position:chr4:9128050-9127831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):111, 30

               
               
               Conread position:37-129
               
               
               Cow position:chr4:22507031-22507123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:78
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-131
               
               
               Cow position:chr4:24713308-24713404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:37-157
               
               
               Cow position:chr4:5784080-5783956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:37-190
               
               
               Cow position:chr4:10722761-10722606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:37-191
               
               
               Cow position:chr4:49741910-49741766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:37-191
               
               
               Cow position:chr4:58856160-58856314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):102, 88

               
               
               Conread position:37-207
               
               
               Cow position:chr4:4135457-4135289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):100, 93

               
               
               Conread position:37-237
               
               
               Cow position:chr4:4300889-4300686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):81, 66

               
               
               Conread position:37-237
               
               
               Cow position:chr4:21162996-21162792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:37-264
               
               
               Cow position:chr4:5188658-5188881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):147, 19

               
               
               Conread position:37-264
               
               
               Cow position:chr4:27444193-27443962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 90

               
               
               Conread position:37-264
               
               
               Cow position:chr4:41975369-41975585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:37-264
               
               
               Cow position:chr4:58832863-58833089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):101, 64

               
               
               Conread position:38-248
               
               
               Cow position:chr4:58432612-58432822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):15, 27

               
               
               Conread position:39-264
               
               
               Cow position:chr4:6793719-6793490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):102, 21

               
               
               Conread position:39-264
               
               
               Cow position:chr4:39647026-39646798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):99, 78

               
               
               Conread position:39-264
               
               
               Cow position:chr4:46875154-46875394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):10, 145

               
               
               Conread position:39-264
               
               
               Cow position:chr4:59565892-59565664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 94

               
               
               Conread position:41-264
               
               
               Cow position:chr4:34043274-34043497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):98, 176

               
               
               Conread position:44-183
               
               
               Cow position:chr4:44644918-44645058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:44-264
               
               
               Cow position:chr4:45112927-45113140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):157, 86

               
               
               Conread position:44-267
               
               
               Cow position:chr4:9822495-9822268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):38, 118

               
               
               Conread position:58-264
               
               
               Cow position:chr4:57221889-57222096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):66, 132

               
               
               Conread position:63-264
               
               
               Cow position:chr4:8597360-8597560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):63, 126

               
               
               Conread position:66-261
               
               
               Cow position:chr4:31586498-31586694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:156
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):76, 65

               
               
               Conread position:67-264
               
               
               Cow position:chr4:32749540-32749342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):75, 31

               
               
               Conread position:70-264
               
               
               Cow position:chr4:60159385-60159583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):66, 147

               
               
               Conread position:72-264
               
               
               Cow position:chr4:51905479-51905294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):103, 52

               
               
               Conread position:73-190
               
               
               Cow position:chr4:63875940-63876063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:73-264
               
               
               Cow position:chr4:53641639-53641452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):65, 8

               
               
               Conread position:96-248
               
               
               Cow position:chr4:49884480-49884631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 82

               
               
               Conread position:2-264
               
               
               Cow position:chr5:51076207-51076480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):21, 227

               
               
               Conread position:22-187
               
               
               Cow position:chr5:57147467-57147302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):121, 96

               
               
               Conread position:23-200
               
               
               Cow position:chr5:53599656-53599832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:25-193
               
               
               Cow position:chr5:35584029-35583858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:25-246
               
               
               Cow position:chr5:28770652-28770435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):13, 46

               
               
               Conread position:33-193
               
               
               Cow position:chr5:73051513-73051348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:35-270
               
               
               Cow position:chr5:33564247-33564018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):224, 11

               
               
               Conread position:36-256
               
               
               Cow position:chr5:15882073-15882293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):103, 141

               
               
               Conread position:37-126
               
               
               Cow position:chr5:35748922-35748833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:90
               
               
               Alignm identity:77
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-190
               
               
               Cow position:chr5:38911451-38911297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):86, 43

               
               
               Conread position:37-190
               
               
               Cow position:chr5:46335094-46334940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):90, 66

               
               
               Conread position:37-191
               
               
               Cow position:chr5:51953253-51953099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):87, 140

               
               
               Conread position:37-192
               
               
               Cow position:chr5:6196672-6196825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):97, 66

               
               
               Conread position:37-193
               
               
               Cow position:chr5:55985435-55985593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 30

               
               
               Conread position:37-193
               
               
               Cow position:chr5:57964918-57965069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:37-206
               
               
               Cow position:chr5:56109780-56109943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):103, 46

               
               
               Conread position:37-229
               
               
               Cow position:chr5:54761258-54761051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):92, 32

               
               
               Conread position:37-247
               
               
               Cow position:chr5:21145850-21146053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):101, 126

               
               
               Conread position:37-260
               
               
               Cow position:chr5:26562523-26562310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:37-264
               
               
               Cow position:chr5:10455746-10455521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):144, 22

               
               
               Conread position:37-264
               
               
               Cow position:chr5:13575370-13575608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):106, 14

               
               
               Conread position:37-264
               
               
               Cow position:chr5:37048440-37048215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):143, 39

               
               
               Conread position:37-264
               
               
               Cow position:chr5:57127835-57127605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:37-267
               
               
               Cow position:chr5:29431275-29431485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:37-267
               
               
               Cow position:chr5:60968813-60968570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:37-269
               
               
               Cow position:chr5:25925493-25925725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):104, 90

               
               
               Conread position:37-294
               
               
               Cow position:chr5:56742040-56741797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):106, 56

               
               
               Conread position:39-193
               
               
               Cow position:chr5:49238819-49238971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:39-248
               
               
               Cow position:chr5:62580190-62579978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):92, 150

               
               
               Conread position:40-188
               
               
               Cow position:chr5:1304859-1305008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):102, 41

               
               
               Conread position:44-206
               
               
               Cow position:chr5:11235951-11235794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 75

               
               
               Conread position:45-193
               
               
               Cow position:chr5:38274145-38273996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):78, 127

               
               
               Conread position:47-193
               
               
               Cow position:chr5:61876901-61877049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:49-198
               
               
               Cow position:chr5:21937348-21937498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:55-204
               
               
               Cow position:chr5:42587560-42587714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):71, 85

               
               
               Conread position:56-264
               
               
               Cow position:chr5:27493073-27492860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):134, 18

               
               
               Conread position:57-191
               
               
               Cow position:chr5:20649187-20649321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):86, 44

               
               
               Conread position:57-245
               
               
               Cow position:chr5:56826160-56825957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:57-264
               
               
               Cow position:chr5:54157065-54156859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:164
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):24, 135

               
               
               Conread position:58-173
               
               
               Cow position:chr5:12602034-12601920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:58-264
               
               
               Cow position:chr5:60725395-60725199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):117, 67

               
               
               Conread position:63-264
               
               
               Cow position:chr5:21166693-21166895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):60, 115

               
               
               Conread position:64-265
               
               
               Cow position:chr5:19299392-19299602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):73, 58

               
               
               Conread position:67-265
               
               
               Cow position:chr5:50156227-50156427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):69, 73

               
               
               Conread position:69-262
               
               
               Cow position:chr5:9233029-9233216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):144, 58

               
               
               Conread position:71-258
               
               
               Cow position:chr5:62863735-62863912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):98, 56

               
               
               Conread position:80-264
               
               
               Cow position:chr5:45911954-45912134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):54, 47

               
               
               Conread position:80-282
               
               
               Cow position:chr5:67577298-67577100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):68, 22

               
               
               Conread position:81-264
               
               
               Cow position:chr5:23234817-23234628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):53, 46

               
               
               Conread position:82-257
               
               
               Cow position:chr5:9585403-9585568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:84-261
               
               
               Cow position:chr5:9025291-9025121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):49, 43

               
               
               Conread position:85-264
               
               
               Cow position:chr5:10785882-10786070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:97-264
               
               
               Cow position:chr5:31550947-31550777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 35

               
               
               Conread position:134-260
               
               
               Cow position:chr5:34168456-34168331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:1-204
               
               
               Cow position:chr6:1940043-1940233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):145, 33

               
               
               Conread position:22-168
               
               
               Cow position:chr6:28087097-28087246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):16, 115

               
               
               Conread position:25-264
               
               
               Cow position:chr6:44377679-44377445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):20, 103

               
               
               Conread position:25-264
               
               
               Cow position:chr6:45617017-45617255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):13, 52

               
               
               Conread position:26-167
               
               
               Cow position:chr6:55662140-55662003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):14, 102

               
               
               Conread position:33-264
               
               
               Cow position:chr6:5678647-5678866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):6, 29

               
               
               Conread position:36-192
               
               
               Cow position:chr6:46627403-46627247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 78

               
               
               Conread position:36-248
               
               
               Cow position:chr6:29078130-29077923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 48

               
               
               Conread position:37-176
               
               
               Cow position:chr6:26692731-26692871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 90

               
               
               Conread position:37-197
               
               
               Cow position:chr6:55659587-55659758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:37-202
               
               
               Cow position:chr6:53416568-53416727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):156, 72

               
               
               Conread position:37-205
               
               
               Cow position:chr6:32428839-32428677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):106, 26

               
               
               Conread position:37-248
               
               
               Cow position:chr6:29082669-29082867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:37-264
               
               
               Cow position:chr6:6244522-6244728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):101, 39

               
               
               Conread position:37-264
               
               
               Cow position:chr6:6635540-6635319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 42

               
               
               Conread position:37-264
               
               
               Cow position:chr6:23891948-23891736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:37-264
               
               
               Cow position:chr6:41557879-41557647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):66, 81

               
               
               Conread position:37-264
               
               
               Cow position:chr6:62754094-62754314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):106, 42

               
               
               Conread position:39-201
               
               
               Cow position:chr6:64889841-64889682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:39-264
               
               
               Cow position:chr6:45692265-45692480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):101, 88

               
               
               Conread position:39-264
               
               
               Cow position:chr6:69274382-69274610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):92, 42

               
               
               Conread position:39-303
               
               
               Cow position:chr6:3374029-3374307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):68, 255

               
               
               Conread position:41-193
               
               
               Cow position:chr6:58954141-58953990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):95, 87

               
               
               Conread position:42-183
               
               
               Cow position:chr6:11035495-11035636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 25

               
               
               Conread position:44-290
               
               
               Cow position:chr6:4666397-4666638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):103, 132

               
               
               Conread position:47-192
               
               
               Cow position:chr6:64063575-64063716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):138, 48

               
               
               Conread position:47-264
               
               
               Cow position:chr6:41157616-41157408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:48-261
               
               
               Cow position:chr6:19459437-19459221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):95, 116

               
               
               Conread position:53-190
               
               
               Cow position:chr6:29299939-29299802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):85, 74

               
               
               Conread position:54-209
               
               
               Cow position:chr6:40299034-40299189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):69, 92

               
               
               Conread position:67-264
               
               
               Cow position:chr6:39293260-39293068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):79, 26

               
               
               Conread position:73-189
               
               
               Cow position:chr6:6722508-6722392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:73-264
               
               
               Cow position:chr6:11159633-11159827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):104, 27

               
               
               Conread position:197-467
               
               
               Cow position:chr6:1940801-1941067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 62

               
               
               Conread position:2-191
               
               
               Cow position:chr7:6532900-6533092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):50, 119

               
               
               Conread position:8-188
               
               
               Cow position:chr7:59164324-59164149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:24-264
               
               
               Cow position:chr7:27709236-27709485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):110, 15

               
               
               Conread position:30-192
               
               
               Cow position:chr7:5247529-5247692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:31-191
               
               
               Cow position:chr7:62048818-62048662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):9, 48

               
               
               Conread position:34-262
               
               
               Cow position:chr7:67499095-67498877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):10, 43

               
               
               Conread position:36-258
               
               
               Cow position:chr7:11592818-11593034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):142, 94

               
               
               Conread position:37-186
               
               
               Cow position:chr7:5435484-5435634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:37-186
               
               
               Cow position:chr7:5447902-5448052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:37-189
               
               
               Cow position:chr7:59844856-59844705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):144, 80

               
               
               Conread position:37-200
               
               
               Cow position:chr7:52131522-52131360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):134, 88

               
               
               Conread position:37-256
               
               
               Cow position:chr7:45064018-45064236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):101, 29

               
               
               Conread position:37-264
               
               
               Cow position:chr7:13823191-13822961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:37-264
               
               
               Cow position:chr7:29377749-29377973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 50

               
               
               Conread position:37-264
               
               
               Cow position:chr7:39512201-39512423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:37-264
               
               
               Cow position:chr7:61425971-61425731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 192

               
               
               Conread position:37-264
               
               
               Cow position:chr7:64366954-64366736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:37-264
               
               
               Cow position:chr7:65953004-65953223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):113, 58

               
               
               Conread position:37-267
               
               
               Cow position:chr7:5701319-5701093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 88

               
               
               Conread position:37-267
               
               
               Cow position:chr7:42222022-42222259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):101, 56

               
               
               Conread position:37-267
               
               
               Cow position:chr7:63328498-63328254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):40, 218

               
               
               Conread position:39-191
               
               
               Cow position:chr7:3626744-3626595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):104, 35

               
               
               Conread position:39-264
               
               
               Cow position:chr7:20104616-20104841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 86

               
               
               Conread position:44-187
               
               
               Cow position:chr7:32588906-32588769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):99, 22

               
               
               Conread position:44-189
               
               
               Cow position:chr7:12163549-12163407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:44-193
               
               
               Cow position:chr7:45722119-45721972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):80, 38

               
               
               Conread position:45-192
               
               
               Cow position:chr7:33062379-33062521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:52-191
               
               
               Cow position:chr7:45099610-45099475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 33

               
               
               Conread position:53-193
               
               
               Cow position:chr7:49893295-49893432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):123, 72

               
               
               Conread position:56-263
               
               
               Cow position:chr7:1397901-1398102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):35, 133

               
               
               Conread position:57-185
               
               
               Cow position:chr7:68246692-68246563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:58-264
               
               
               Cow position:chr7:62516390-62516186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):114, 80

               
               
               Conread position:62-193
               
               
               Cow position:chr7:54061704-54061835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):78, 22

               
               
               Conread position:65-184
               
               
               Cow position:chr7:53408942-53408824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):73, 102

               
               
               Conread position:66-193
               
               
               Cow position:chr7:53358658-53358785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):109, 59

               
               
               Conread position:74-264
               
               
               Cow position:chr7:68367177-68367372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):62, 28

               
               
               Conread position:76-239
               
               
               Cow position:chr7:28560689-28560851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):6, 96

               
               
               Conread position:87-264
               
               
               Cow position:chr7:2967490-2967309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):43, 10

               
               
               Conread position:92-264
               
               
               Cow position:chr7:34798597-34798430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:1-264
               
               
               Cow position:chr8:19369081-19369343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):41, 133

               
               
               Conread position:1-267
               
               
               Cow position:chr8:45686036-45686301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):34, 131

               
               
               Conread position:23-264
               
               
               Cow position:chr8:7104030-7104269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):163, 18

               
               
               Conread position:24-193
               
               
               Cow position:chr8:42399749-42399919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):19, 106

               
               
               Conread position:25-196
               
               
               Cow position:chr8:18810808-18810637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):13, 107

               
               
               Conread position:36-233
               
               
               Cow position:chr8:53891900-53891690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:36-264
               
               
               Cow position:chr8:4336692-4336924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:36-264
               
               
               Cow position:chr8:11792583-11792350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:37-123
               
               
               Cow position:chr8:18801604-18801518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:75
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-129
               
               
               Cow position:chr8:31185377-31185285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:81
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-141
               
               
               Cow position:chr8:18883191-18883089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:37-173
               
               
               Cow position:chr8:14617528-14617669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:37-182
               
               
               Cow position:chr8:31262780-31262634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:37-183
               
               
               Cow position:chr8:11974824-11974680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):109, 64

               
               
               Conread position:37-184
               
               
               Cow position:chr8:51443194-51443334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:37-190
               
               
               Cow position:chr8:41411599-41411444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):91, 60

               
               
               Conread position:37-190
               
               
               Cow position:chr8:43379712-43379556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:37-191
               
               
               Cow position:chr8:47128936-47128784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):101, 70

               
               
               Conread position:37-191
               
               
               Cow position:chr8:51633833-51633991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):35, 112

               
               
               Conread position:37-192
               
               
               Cow position:chr8:21945795-21945639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):85, 97

               
               
               Conread position:37-193
               
               
               Cow position:chr8:51562397-51562241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:37-197
               
               
               Cow position:chr8:33818866-33819028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):103, 93

               
               
               Conread position:37-213
               
               
               Cow position:chr8:36687039-36686861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):106, 85

               
               
               Conread position:37-229
               
               
               Cow position:chr8:48682129-48682319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):146, 53

               
               
               Conread position:37-262
               
               
               Cow position:chr8:22102826-22103053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):86, 151

               
               
               Conread position:37-264
               
               
               Cow position:chr8:18725583-18725357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):131, 88

               
               
               Conread position:37-264
               
               
               Cow position:chr8:21078902-21078677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 16

               
               
               Conread position:37-264
               
               
               Cow position:chr8:30021556-30021779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:37-264
               
               
               Cow position:chr8:33438153-33437938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):109, 15

               
               
               Conread position:37-264
               
               
               Cow position:chr8:54159104-54158881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):94, 20

               
               
               Conread position:38-263
               
               
               Cow position:chr8:5874513-5874300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:178
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:38-264
               
               
               Cow position:chr8:20341344-20341564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):108, 41

               
               
               Conread position:39-201
               
               
               Cow position:chr8:37381503-37381353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:39-208
               
               
               Cow position:chr8:54828605-54828437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):99, 24

               
               
               Conread position:39-264
               
               
               Cow position:chr8:23440741-23440981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):93, 40

               
               
               Conread position:39-266
               
               
               Cow position:chr8:952392-952176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):175, 68

               
               
               Conread position:40-202
               
               
               Cow position:chr8:9986095-9985929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):98, 111

               
               
               Conread position:41-261
               
               
               Cow position:chr8:40273279-40273493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):20, 29

               
               
               Conread position:41-264
               
               
               Cow position:chr8:40432504-40432718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):37, 100

               
               
               Conread position:44-192
               
               
               Cow position:chr8:20925969-20926112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):99, 19

               
               
               Conread position:46-184
               
               
               Cow position:chr8:59472820-59472960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):84, 9

               
               
               Conread position:51-189
               
               
               Cow position:chr8:12790529-12790665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):33, 117

               
               
               Conread position:73-264
               
               
               Cow position:chr8:2974986-2974798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):51, 65

               
               
               Conread position:80-197
               
               
               Cow position:chr8:8610875-8610992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:83-264
               
               
               Cow position:chr8:27369411-27369235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):60, 93

               
               
               Conread position:102-264
               
               
               Cow position:chr8:21118958-21119127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:102-267
               
               
               Cow position:chr8:31887037-31886875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):41, 68

               
               
               Conread position:18-192
               
               
               Cow position:chr9:26197986-26197814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 60

               
               
               Conread position:25-187
               
               
               Cow position:chr9:39001418-39001580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):13, 104

               
               
               Conread position:28-264
               
               
               Cow position:chr9:1281450-1281209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):112, 96

               
               
               Conread position:32-248
               
               
               Cow position:chr9:12181631-12181847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 20

               
               
               Conread position:37-182
               
               
               Cow position:chr9:42214987-42214841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 105

               
               
               Conread position:37-190
               
               
               Cow position:chr9:3582949-3582799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):110, 94

               
               
               Conread position:37-191
               
               
               Cow position:chr9:1527131-1526976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:37-191
               
               
               Cow position:chr9:12199239-12199086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:37-191
               
               
               Cow position:chr9:19080558-19080404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):76, 97

               
               
               Conread position:37-191
               
               
               Cow position:chr9:52766787-52766623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):91, 159

               
               
               Conread position:37-193
               
               
               Cow position:chr9:36586831-36586679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):109, 40

               
               
               Conread position:37-201
               
               
               Cow position:chr9:12565050-12565206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):142, 40

               
               
               Conread position:37-212
               
               
               Cow position:chr9:4985698-4985519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):101, 72

               
               
               Conread position:37-213
               
               
               Cow position:chr9:46657976-46657814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:37-259
               
               
               Cow position:chr9:39993946-39993726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):105, 146

               
               
               Conread position:37-260
               
               
               Cow position:chr9:53597137-53596914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 92

               
               
               Conread position:37-261
               
               
               Cow position:chr9:18570719-18570498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 140

               
               
               Conread position:37-264
               
               
               Cow position:chr9:4834649-4834879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):74, 38

               
               
               Conread position:37-264
               
               
               Cow position:chr9:9077439-9077215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 89

               
               
               Conread position:37-264
               
               
               Cow position:chr9:41318315-41318076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):141, 85

               
               
               Conread position:37-264
               
               
               Cow position:chr9:44944434-44944214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:38-263
               
               
               Cow position:chr9:34763184-34762962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):108, 118

               
               
               Conread position:40-264
               
               
               Cow position:chr9:34188650-34188857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:41-241
               
               
               Cow position:chr9:35527379-35527585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:165
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):91, 182

               
               
               Conread position:42-264
               
               
               Cow position:chr9:52725684-52725457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:44-193
               
               
               Cow position:chr9:5707266-5707414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):102, 62

               
               
               Conread position:53-267
               
               
               Cow position:chr9:7670299-7670514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:165
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:57-191
               
               
               Cow position:chr9:4915145-4915012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):86, 52

               
               
               Conread position:65-283
               
               
               Cow position:chr9:2638629-2638405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):117, 14

               
               
               Conread position:66-264
               
               
               Cow position:chr9:6109588-6109782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):155, 73

               
               
               Conread position:66-264
               
               
               Cow position:chr9:15685751-15685553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:66-264
               
               
               Cow position:chr9:55364583-55364788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:76-193
               
               
               Cow position:chr9:19119274-19119159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):57, 30

               
               
               Conread position:80-267
               
               
               Cow position:chr9:5622317-5622125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:1-262
               
               
               Cow position:chrX:24286378-24286130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:1-264
               
               
               Cow position:chrX:16817094-16816837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):38, 69

               
               
               Conread position:25-201
               
               
               Cow position:chrX:2700707-2700880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):101, 19

               
               
               Conread position:25-264
               
               
               Cow position:chrX:24201575-24201347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):13, 83

               
               
               Conread position:25-264
               
               
               Cow position:chrX:25106624-25106377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:25-267
               
               
               Cow position:chrX:8558057-8558300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 108

               
               
               Conread position:34-264
               
               
               Cow position:chrX:18518194-18517953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):75, 7

               
               
               Conread position:36-184
               
               
               Cow position:chrX:18467853-18467697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):40, 125

               
               
               Conread position:37-189
               
               
               Cow position:chrX:4625294-4625141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:37-189
               
               
               Cow position:chrX:27458345-27458486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:37-191
               
               
               Cow position:chrX:5150318-5150466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:37-191
               
               
               Cow position:chrX:10462706-10462552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):34, 26

               
               
               Conread position:37-191
               
               
               Cow position:chrX:25921398-25921549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):70, 43

               
               
               Conread position:37-192
               
               
               Cow position:chrX:19210318-19210476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 53

               
               
               Conread position:37-192
               
               
               Cow position:chrX:31386267-31386112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):145, 96

               
               
               Conread position:37-195
               
               
               Cow position:chrX:2078920-2079075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):145, 88

               
               
               Conread position:37-195
               
               
               Cow position:chrX:5660437-5660275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):109, 99

               
               
               Conread position:37-195
               
               
               Cow position:chrX:24194175-24194016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):66, 90

               
               
               Conread position:37-195
               
               
               Cow position:chrX:37137888-37138044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):110, 70

               
               
               Conread position:37-196
               
               
               Cow position:chrX:24203573-24203416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:37-198
               
               
               Cow position:chrX:13060931-13060768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):99, 86

               
               
               Conread position:37-213
               
               
               Cow position:chrX:19127248-19127424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):147, 97

               
               
               Conread position:37-246
               
               
               Cow position:chrX:24951982-24952190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):106, 21

               
               
               Conread position:37-254
               
               
               Cow position:chrX:19017856-19018085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 207

               
               
               Conread position:37-254
               
               
               Cow position:chrX:20505095-20504877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):101, 169

               
               
               Conread position:37-264
               
               
               Cow position:chrX:2186642-2186427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:37-264
               
               
               Cow position:chrX:4590339-4590119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:178
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):99, 64

               
               
               Conread position:37-264
               
               
               Cow position:chrX:10312126-10311901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):99, 154

               
               
               Conread position:37-264
               
               
               Cow position:chrX:18814555-18814339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:37-264
               
               
               Cow position:chrX:21885722-21885945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:37-264
               
               
               Cow position:chrX:43647368-43647597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):105, 69

               
               
               Conread position:37-267
               
               
               Cow position:chrX:4597330-4597569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):94, 63

               
               
               Conread position:37-279
               
               
               Cow position:chrX:40353695-40353462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 82

               
               
               Conread position:37-298
               
               
               Cow position:chrX:25453569-25453311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 101

               
               
               Conread position:38-140
               
               
               Cow position:chrX:25653500-25653398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:87
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-264
               
               
               Cow position:chrX:956865-956648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:182
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):41, 90

               
               
               Conread position:38-264
               
               
               Cow position:chrX:11675457-11675232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:39-190
               
               
               Cow position:chrX:11982984-11982836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):98, 33

               
               
               Conread position:39-263
               
               
               Cow position:chrX:21816654-21816427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 88

               
               
               Conread position:39-264
               
               
               Cow position:chrX:12688692-12688918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):104, 63

               
               
               Conread position:41-264
               
               
               Cow position:chrX:31817062-31816857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:41-266
               
               
               Cow position:chrX:28939181-28938958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:175
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:41-280
               
               
               Cow position:chrX:9051045-9051281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):141, 86

               
               
               Conread position:43-264
               
               
               Cow position:chrX:3404758-3404982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):33, 89

               
               
               Conread position:45-190
               
               
               Cow position:chrX:18699979-18700126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):91, 119

               
               
               Conread position:46-187
               
               
               Cow position:chrX:10534459-10534318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):97, 84

               
               
               Conread position:47-193
               
               
               Cow position:chrX:5675631-5675778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):7, 125

               
               
               Conread position:53-202
               
               
               Cow position:chrX:6472075-6471929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):117, 44

               
               
               Conread position:56-264
               
               
               Cow position:chrX:19216947-19217160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):119, 71

               
               
               Conread position:59-226
               
               
               Cow position:chrX:37364784-37364616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):82, 131

               
               
               Conread position:80-248
               
               
               Cow position:chrX:37956919-37956753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):66, 47

               
               
               Conread position:80-262
               
               
               Cow position:chrX:23253844-23254032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):62, 135

               
               
               Conread position:80-268
               
               
               Cow position:chrX:9910399-9910593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):135, 9
Conread position:	1-261
Cow position:	chr1:76780026-76780305 (view UCSC Genome Browser custom track)
Alignm length:	284
Alignm identity:	204
Alignm E-value:	1e-29
Alignm gaps (pig, cow):	18, 61
Conread position:	25-140
Cow position:	chr1:17066132-17066016 (view UCSC Genome Browser custom track)
Alignm length:	118
Alignm identity:	94
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	13, 80
Conread position:	26-241
Cow position:	chr1:34311204-34310993 (view UCSC Genome Browser custom track)
Alignm length:	222
Alignm identity:	167
Alignm E-value:	4e-31
Alignm gaps (pig, cow):	28, 11
Conread position:	33-260
Cow position:	chr1:11831645-11831419 (view UCSC Genome Browser custom track)
Alignm length:	234
Alignm identity:	180
Alignm E-value:	9.99995e-41
Alignm gaps (pig, cow):	10, 68
Conread position:	36-261
Cow position:	chr1:64479609-64479827 (view UCSC Genome Browser custom track)
Alignm length:	235
Alignm identity:	175
Alignm E-value:	4e-30
Alignm gaps (pig, cow):	147, 60
Conread position:	37-183
Cow position:	chr1:47427912-47427765 (view UCSC Genome Browser custom track)
Alignm length:	148
Alignm identity:	107
Alignm E-value:	4e-21
Alignm gaps (pig, cow):	85, 0
Conread position:	37-189
Cow position:	chr1:80329681-80329833 (view UCSC Genome Browser custom track)
Alignm length:	153
Alignm identity:	124
Alignm E-value:	7e-36
Alignm gaps (pig, cow):	0, 0
Conread position:	37-192
Cow position:	chr1:41092812-41092974 (view UCSC Genome Browser custom track)
Alignm length:	163
Alignm identity:	125
Alignm E-value:	9e-28
Alignm gaps (pig, cow):	91, 0
Conread position:	37-193
Cow position:	chr1:56858583-56858426 (view UCSC Genome Browser custom track)
Alignm length:	159
Alignm identity:	117
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	98, 88
Conread position:	37-195
Cow position:	chr1:69290479-69290323 (view UCSC Genome Browser custom track)
Alignm length:	161
Alignm identity:	117
Alignm E-value:	4e-21
Alignm gaps (pig, cow):	108, 44
Conread position:	37-205
Cow position:	chr1:3020422-3020589 (view UCSC Genome Browser custom track)
Alignm length:	170
Alignm identity:	130
Alignm E-value:	1e-30
Alignm gaps (pig, cow):	101, 53
Conread position:	37-209
Cow position:	chr1:14560176-14560342 (view UCSC Genome Browser custom track)
Alignm length:	175
Alignm identity:	140
Alignm E-value:	2e-33
Alignm gaps (pig, cow):	108, 84
Conread position:	37-256
Cow position:	chr1:39244201-39244425 (view UCSC Genome Browser custom track)
Alignm length:	225
Alignm identity:	176
Alignm E-value:	0
Alignm gaps (pig, cow):	76, 0
Conread position:	37-258
Cow position:	chr1:74713819-74713601 (view UCSC Genome Browser custom track)
Alignm length:	228
Alignm identity:	167
Alignm E-value:	4e-30
Alignm gaps (pig, cow):	133, 40
Conread position:	37-260
Cow position:	chr1:37432737-37432505 (view UCSC Genome Browser custom track)
Alignm length:	235
Alignm identity:	168
Alignm E-value:	3e-29
Alignm gaps (pig, cow):	100, 91
Conread position:	37-262
Cow position:	chr1:85591-85365 (view UCSC Genome Browser custom track)
Alignm length:	234
Alignm identity:	166
Alignm E-value:	3e-27
Alignm gaps (pig, cow):	83, 44
Conread position:	37-264
Cow position:	chr1:18223508-18223726 (view UCSC Genome Browser custom track)
Alignm length:	228
Alignm identity:	163
Alignm E-value:	4e-30
Alignm gaps (pig, cow):	45, 0
Conread position:	37-267
Cow position:	chr1:31232977-31233212 (view UCSC Genome Browser custom track)
Alignm length:	239
Alignm identity:	180
Alignm E-value:	9.99995e-41
Alignm gaps (pig, cow):	81, 14
Conread position:	38-195
Cow position:	chr1:79915575-79915415 (view UCSC Genome Browser custom track)
Alignm length:	162
Alignm identity:	125
Alignm E-value:	9e-28
Alignm gaps (pig, cow):	96, 79
Conread position:	38-197
Cow position:	chr1:58341662-58341499 (view UCSC Genome Browser custom track)
Alignm length:	164
Alignm identity:	118
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	105, 0