Non-Coding RNA Search

Cow genome map


           Conread name:
           unkn-09A08GT3
        

               Conread position:
               1-139
               

               Cow position:
               chr1:55181635-55181774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               111
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               1-139
               

               Cow position:
               chr1:55184973-55184834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               111
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               1-149
               

               Cow position:
               chr1:3570120-3570266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               109
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               1-162
               

               Cow position:
               chr1:96043812-96043648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               121
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               123, 69
               

               Conread position:
               1-165
               

               Cow position:
               chr1:43790046-43789883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               159, 0
               

               Conread position:
               1-166
               

               Cow position:
               chr1:9958697-9958530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               124
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               35, 149
               

               Conread position:
               1-166
               

               Cow position:
               chr1:90390188-90390356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               75, 38
               

               Conread position:
               1-187
               

               Cow position:
               chr1:36896969-36897147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               49, 14
               

               Conread position:
               1-189
               

               Cow position:
               chr1:88910713-88910898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               104, 39
               

               Conread position:
               1-197
               

               Cow position:
               chr1:62732757-62732568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               124, 42
               

               Conread position:
               1-204
               

               Cow position:
               chr1:70416319-70416118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               123, 14
               

               Conread position:
               1-216
               

               Cow position:
               chr1:75998279-75998491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               124, 41
               

               Conread position:
               1-218
               

               Cow position:
               chr1:74081790-74082008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               146
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               123, 78
               

               Conread position:
               1-221
               

               Cow position:
               chr1:3288956-3289168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               129, 42
               

               Conread position:
               1-221
               

               Cow position:
               chr1:51904150-51904363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               124, 42
               

               Conread position:
               1-222
               

               Cow position:
               chr1:57119155-57119374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               167
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               1-222
               

               Cow position:
               chr1:61225469-61225266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               124, 53
               

               Conread position:
               1-224
               

               Cow position:
               chr1:21787535-21787306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               160
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               56, 215
               

               Conread position:
               1-227
               

               Cow position:
               chr1:88321754-88321972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               1-230
               

               Cow position:
               chr1:85141544-85141768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               168
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               123, 16
               

               Conread position:
               1-235
               

               Cow position:
               chr1:36613900-36614127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               123, 42
               

               Conread position:
               1-238
               

               Cow position:
               chr1:50634068-50634302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               129, 155
               

               Conread position:
               1-239
               

               Cow position:
               chr1:2765593-2765368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               124, 42
               

               Conread position:
               1-239
               

               Cow position:
               chr1:13228174-13227933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               59, 13
               

               Conread position:
               1-239
               

               Cow position:
               chr1:20582133-20581897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               124, 42
               

               Conread position:
               1-239
               

               Cow position:
               chr1:22777351-22777588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               179
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               123, 213
               

               Conread position:
               1-239
               

               Cow position:
               chr1:26531393-26531630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               123, 12
               

               Conread position:
               1-239
               

               Cow position:
               chr1:30066812-30066574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               126, 19
               

               Conread position:
               1-239
               

               Cow position:
               chr1:31871620-31871382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               168
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               107, 39
               

               Conread position:
               1-239
               

               Cow position:
               chr1:35170518-35170291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               1-239
               

               Cow position:
               chr1:45479399-45479631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               123, 152
               

               Conread position:
               1-239
               

               Cow position:
               chr1:46206001-46205775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               116, 42
               

               Conread position:
               1-239
               

               Cow position:
               chr1:46839800-46839558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               116, 31
               

               Conread position:
               1-239
               

               Cow position:
               chr1:64218238-64218472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               123, 13
               

               Conread position:
               1-239
               

               Cow position:
               chr1:66355522-66355759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               123, 161
               

               Conread position:
               1-239
               

               Cow position:
               chr1:82880842-82880601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               170
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               71, 157
               

               Conread position:
               1-239
               

               Cow position:
               chr1:93110420-93110664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               173
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               2-149
               

               Cow position:
               chr1:44169845-44169695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               2-165
               

               Cow position:
               chr1:64624638-64624800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               122, 38
               

               Conread position:
               2-174
               

               Cow position:
               chr1:29338108-29337933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               2-182
               

               Cow position:
               chr1:5102303-5102478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               122, 41
               

               Conread position:
               2-184
               

               Cow position:
               chr1:82076763-82076586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               122, 12
               

               Conread position:
               2-187
               

               Cow position:
               chr1:33921088-33921272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               18, 169
               

               Conread position:
               2-201
               

               Cow position:
               chr1:39183632-39183836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               130, 61
               

               Conread position:
               2-205
               

               Cow position:
               chr1:96346498-96346701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               103, 29
               

               Conread position:
               2-206
               

               Cow position:
               chr1:10063794-10063990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               13, 56
               

               Conread position:
               2-208
               

               Cow position:
               chr1:53039519-53039717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               2-216
               

               Cow position:
               chr1:23759975-23759757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               2-219
               

               Cow position:
               chr1:46006018-46006232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               160
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               125, 38
               

               Conread position:
               2-225
               

               Cow position:
               chr1:76170396-76170173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               153
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               32, 156
               

               Conread position:
               2-226
               

               Cow position:
               chr1:59132020-59132249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               176
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               12, 224
               

               Conread position:
               2-227
               

               Cow position:
               chr1:5278229-5278444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               122, 12
               

               Conread position:
               2-228
               

               Cow position:
               chr1:74946929-74947153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               176
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               18, 13
               

               Conread position:
               2-229
               

               Cow position:
               chr1:35843731-35843963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               2-239
               

               Cow position:
               chr1:25793248-25793478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               18, 13
               

               Conread position:
               2-239
               

               Cow position:
               chr1:38525799-38525545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               2-239
               

               Cow position:
               chr1:69415519-69415756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 107
               

               Conread position:
               2-239
               

               Cow position:
               chr1:76096625-76096392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               179
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               15, 97
               

               Conread position:
               3-137
               

               Cow position:
               chr1:19416690-19416823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               121, 58
               

               Conread position:
               3-165
               

               Cow position:
               chr1:14980929-14981098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               3-169
               

               Cow position:
               chr1:81177669-81177831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               121, 20
               

               Conread position:
               3-172
               

               Cow position:
               chr1:79663244-79663418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               124
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               3-176
               

               Cow position:
               chr1:49347369-49347200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               124, 83
               

               Conread position:
               3-187
               

               Cow position:
               chr1:46822159-46821973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               3-189
               

               Cow position:
               chr1:82371125-82370951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               140
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               103, 60
               

               Conread position:
               3-190
               

               Cow position:
               chr1:13733278-13733457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               121, 26
               

               Conread position:
               3-201
               

               Cow position:
               chr1:5347245-5347054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               143
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               122, 27
               

               Conread position:
               3-201
               

               Cow position:
               chr1:45310085-45310280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               57, 69
               

               Conread position:
               3-204
               

               Cow position:
               chr1:97622030-97622228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               102, 148
               

               Conread position:
               3-205
               

               Cow position:
               chr1:71782481-71782675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               3-205
               

               Cow position:
               chr1:76206765-76206970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               119, 17
               

               Conread position:
               3-219
               

               Cow position:
               chr1:75183561-75183772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               122, 152
               

               Conread position:
               3-222
               

               Cow position:
               chr1:15902685-15902465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               121, 196
               

               Conread position:
               3-228
               

               Cow position:
               chr1:54289001-54289227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               169
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               125, 209
               

               Conread position:
               3-228
               

               Cow position:
               chr1:78791118-78791338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               115, 0
               

               Conread position:
               3-237
               

               Cow position:
               chr1:46218758-46218531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               119, 17
               

               Conread position:
               3-238
               

               Cow position:
               chr1:45638668-45638443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               122, 11
               

               Conread position:
               3-238
               

               Cow position:
               chr1:96929220-96928994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               167
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               10, 38
               

               Conread position:
               3-239
               

               Cow position:
               chr1:39121658-39121883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               164
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               121, 51
               

               Conread position:
               3-239
               

               Cow position:
               chr1:44747050-44746821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               121, 102
               

               Conread position:
               3-239
               

               Cow position:
               chr1:64189691-64189454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               173
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               3-239
               

               Cow position:
               chr1:89548377-89548148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               121, 95
               

               Conread position:
               3-239
               

               Cow position:
               chr1:90422892-90423127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               121, 159
               

               Conread position:
               4-113
               

               Cow position:
               chr1:57389953-57390062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               110
               

               Alignm identity:
               89
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               4-201
               

               Cow position:
               chr1:53920776-53920582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               121, 154
               

               Conread position:
               4-201
               

               Cow position:
               chr1:62142300-62142493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               140
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               120, 21
               

               Conread position:
               4-216
               

               Cow position:
               chr1:13195244-13195453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               120, 91
               

               Conread position:
               4-216
               

               Cow position:
               chr1:45925230-45925017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               27, 112
               

               Conread position:
               4-221
               

               Cow position:
               chr1:15314728-15314952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               85, 76
               

               Conread position:
               4-225
               

               Cow position:
               chr1:61737285-61737065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               120, 151
               

               Conread position:
               4-225
               

               Cow position:
               chr1:82378980-82378759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               118, 91
               

               Conread position:
               4-228
               

               Cow position:
               chr1:97603451-97603667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               120, 13
               

               Conread position:
               4-229
               

               Cow position:
               chr1:18414281-18414501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               170
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               4-229
               

               Cow position:
               chr1:54478524-54478290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               4-237
               

               Cow position:
               chr1:31390403-31390633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               120, 30
               

               Conread position:
               4-238
               

               Cow position:
               chr1:52414775-52415004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               201, 87
               

               Conread position:
               4-239
               

               Cow position:
               chr1:18283670-18283440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               118, 19
               

               Conread position:
               4-239
               

               Cow position:
               chr1:33986333-33986554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               4-239
               

               Cow position:
               chr1:51257202-51256971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               120, 10
               

               Conread position:
               4-239
               

               Cow position:
               chr1:63504521-63504290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               118, 10
               

               Conread position:
               5-193
               

               Cow position:
               chr1:24188407-24188222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               101, 8
               

               Conread position:
               5-200
               

               Cow position:
               chr1:70236080-70236269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               100, 40
               

               Conread position:
               5-218
               

               Cow position:
               chr1:25184299-25184095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               151
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               117, 150
               

               Conread position:
               5-218
               

               Cow position:
               chr1:38205658-38205448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               119, 34
               

               Conread position:
               5-220
               

               Cow position:
               chr1:8919377-8919591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               63, 10
               

               Conread position:
               5-227
               

               Cow position:
               chr1:65665240-65665023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               157, 110
               

               Conread position:
               5-237
               

               Cow position:
               chr1:31189929-31190150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               174
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               119, 10
               

               Conread position:
               5-237
               

               Cow position:
               chr1:54217204-54216974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               175
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               120, 112
               

               Conread position:
               5-238
               

               Cow position:
               chr1:21679336-21679110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               163
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               123, 44
               

               Conread position:
               5-239
               

               Cow position:
               chr1:7657131-7657356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               117, 46
               

               Conread position:
               5-239
               

               Cow position:
               chr1:26688284-26688518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               119, 127
               

               Conread position:
               5-239
               

               Cow position:
               chr1:28678711-28678476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               5-239
               

               Cow position:
               chr1:89443291-89443525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               38, 8
               

               Conread position:
               6-216
               

               Cow position:
               chr1:28657496-28657708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               52, 76
               

               Conread position:
               6-219
               

               Cow position:
               chr1:56643416-56643627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               7, 150
               

               Conread position:
               6-223
               

               Cow position:
               chr1:541981-541765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               6-228
               

               Cow position:
               chr1:15028943-15028717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               46, 109
               

               Conread position:
               9-189
               

               Cow position:
               chr1:50261745-50261924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               116, 11
               

               Conread position:
               9-189
               

               Cow position:
               chr1:95229146-95229328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               131
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               96, 100
               

               Conread position:
               9-204
               

               Cow position:
               chr1:96339918-96339736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               118, 55
               

               Conread position:
               9-239
               

               Cow position:
               chr1:23100085-23099856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               178
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               115, 86
               

               Conread position:
               9-239
               

               Cow position:
               chr1:92010500-92010263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               33, 229
               

               Conread position:
               10-219
               

               Cow position:
               chr1:39224737-39224954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               11-150
               

               Cow position:
               chr1:101107814-101107680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               108
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               11-189
               

               Cow position:
               chr1:80384581-80384760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               11-205
               

               Cow position:
               chr1:17821610-17821417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               113, 145
               

               Conread position:
               11-230
               

               Cow position:
               chr1:14098968-14098755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               149
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               113, 138
               

               Conread position:
               11-239
               

               Cow position:
               chr1:59650452-59650223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               116, 34
               

               Conread position:
               14-218
               

               Cow position:
               chr1:49130952-49131152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               173, 111
               

               Conread position:
               14-230
               

               Cow position:
               chr1:42555441-42555227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               105, 29
               

               Conread position:
               14-234
               

               Cow position:
               chr1:23041742-23041525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               113, 21
               

               Conread position:
               14-239
               

               Cow position:
               chr1:79115525-79115299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               111, 143
               

               Conread position:
               15-169
               

               Cow position:
               chr1:93031587-93031741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               118
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               107, 15
               

               Conread position:
               15-238
               

               Cow position:
               chr1:85411748-85411535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               106, 33
               

               Conread position:
               19-229
               

               Cow position:
               chr1:70533764-70533970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               105, 131
               

               Conread position:
               19-238
               

               Cow position:
               chr1:80764361-80764580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               167
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               105, 196
               

               Conread position:
               19-239
               

               Cow position:
               chr1:3657192-3657408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               106, 62
               

               Conread position:
               19-239
               

               Cow position:
               chr1:71136324-71136106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               106, 24
               

               Conread position:
               19-239
               

               Cow position:
               chr1:95764919-95765133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               105, 76
               

               Conread position:
               20-216
               

               Cow position:
               chr1:54125053-54125250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               52, 23
               

               Conread position:
               22-217
               

               Cow position:
               chr1:22910524-22910338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               102, 18
               

               Conread position:
               23-239
               

               Cow position:
               chr1:21934013-21934219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               23-239
               

               Cow position:
               chr1:26427691-26427908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               101, 51
               

               Conread position:
               23-239
               

               Cow position:
               chr1:58825710-58825497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               105, 55
               

               Conread position:
               26-238
               

               Cow position:
               chr1:90413542-90413337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               191, 45
               

               Conread position:
               27-238
               

               Cow position:
               chr1:2998117-2997904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               25, 144
               

               Conread position:
               28-229
               

               Cow position:
               chr1:72641478-72641680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               91, 178
               

               Conread position:
               33-230
               

               Cow position:
               chr1:72807481-72807284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               68, 163
               

               Conread position:
               34-199
               

               Cow position:
               chr1:44511374-44511540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               36-228
               

               Cow position:
               chr1:30442114-30441923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               88, 113
               

               Conread position:
               40-237
               

               Cow position:
               chr1:72732194-72731996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               87, 55
               

               Conread position:
               40-239
               

               Cow position:
               chr1:29975453-29975646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               85, 22
               

               Conread position:
               41-227
               

               Cow position:
               chr1:32913894-32913709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               84, 8
               

               Conread position:
               42-239
               

               Cow position:
               chr1:15691481-15691290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               30, 21
               

               Conread position:
               43-239
               

               Cow position:
               chr1:41735470-41735667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               81, 38
               

               Conread position:
               43-239
               

               Cow position:
               chr1:75347775-75347578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               50-239
               

               Cow position:
               chr1:80973465-80973649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               77, 49
               

               Conread position:
               55-239
               

               Cow position:
               chr1:8192597-8192775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               70, 33
               

               Conread position:
               55-239
               

               Cow position:
               chr1:48083866-48083683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               70, 52
               

               Conread position:
               56-233
               

               Cow position:
               chr1:69004528-69004357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               69, 42
               

               Conread position:
               56-239
               

               Cow position:
               chr1:5228828-5229011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               72, 175
               

               Conread position:
               61-237
               

               Cow position:
               chr1:101772032-101771862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               63, 85
               

               Conread position:
               61-239
               

               Cow position:
               chr1:10719348-10719524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               63, 18
               

               Conread position:
               62-208
               

               Cow position:
               chr1:50345677-50345530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               117
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               87-239
               

               Cow position:
               chr1:57783111-57782961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               118
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               17, 7
               

               Conread position:
               108-238
               

               Cow position:
               chr1:92642363-92642493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               17, 89
               

               Conread position:
               1-91
               

               Cow position:
               chr10:50517760-50517850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               91
               

               Alignm identity:
               77
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-222
               

               Cow position:
               chr10:52244484-52244705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               174
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 219
               

               Conread position:
               1-223
               

               Cow position:
               chr10:48741001-48741220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               157
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               123, 69
               

               Conread position:
               1-227
               

               Cow position:
               chr10:10124505-10124280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               172
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               123, 13
               

               Conread position:
               1-228
               

               Cow position:
               chr10:9341573-9341795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               104, 80
               

               Conread position:
               1-228
               

               Cow position:
               chr10:17863744-17863520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               126, 17
               

               Conread position:
               1-228
               

               Cow position:
               chr10:39081556-39081333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               123, 94
               

               Conread position:
               1-229
               

               Cow position:
               chr10:60388600-60388831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               121, 44
               

               Conread position:
               1-237
               

               Cow position:
               chr10:11403977-11404208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               123, 59
               

               Conread position:
               1-237
               

               Cow position:
               chr10:42755487-42755249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               35, 78
               

               Conread position:
               1-237
               

               Cow position:
               chr10:50324233-50324466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               11, 135
               

               Conread position:
               1-239
               

               Cow position:
               chr10:1069982-1070219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               165
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               42, 22
               

               Conread position:
               1-239
               

               Cow position:
               chr10:8412891-8413124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               178
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               128, 30
               

               Conread position:
               1-239
               

               Cow position:
               chr10:15391653-15391415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               12, 81
               

               Conread position:
               1-239
               

               Cow position:
               chr10:24786271-24786032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               177
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               97, 124
               

               Conread position:
               1-239
               

               Cow position:
               chr10:37707250-37707012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               82, 20
               

               Conread position:
               1-239
               

               Cow position:
               chr10:42454281-42454055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               123, 13
               

               Conread position:
               1-239
               

               Cow position:
               chr10:48255062-48255297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 14
               

               Conread position:
               2-120
               

               Cow position:
               chr10:8680894-8681010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               93
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               2-163
               

               Cow position:
               chr10:52889077-52889235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               122, 12
               

               Conread position:
               2-180
               

               Cow position:
               chr10:10803054-10803228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               2-201
               

               Cow position:
               chr10:1108302-1108502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               143
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               122, 13
               

               Conread position:
               2-201
               

               Cow position:
               chr10:16683649-16683845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               143
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               122, 38
               

               Conread position:
               2-212
               

               Cow position:
               chr10:67020777-67020571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               202, 110
               

               Conread position:
               2-222
               

               Cow position:
               chr10:3115644-3115422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               96, 70
               

               Conread position:
               2-226
               

               Cow position:
               chr10:11317114-11316892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               122, 91
               

               Conread position:
               2-226
               

               Cow position:
               chr10:69226090-69225862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               58, 149
               

               Conread position:
               2-234
               

               Cow position:
               chr10:23948757-23948990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               171
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               2-237
               

               Cow position:
               chr10:65071955-65072190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               10, 61
               

               Conread position:
               2-238
               

               Cow position:
               chr10:49624930-49624692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               2-239
               

               Cow position:
               chr10:38518475-38518701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               122, 38
               

               Conread position:
               2-239
               

               Cow position:
               chr10:62325772-62325541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               119, 96
               

               Conread position:
               2-239
               

               Cow position:
               chr10:62517044-62516807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               122, 206
               

               Conread position:
               3-165
               

               Cow position:
               chr10:61113347-61113187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               121
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               119, 35
               

               Conread position:
               3-170
               

               Cow position:
               chr10:61426574-61426742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               3-199
               

               Cow position:
               chr10:27538661-27538465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               145
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               13, 80
               

               Conread position:
               3-200
               

               Cow position:
               chr10:16649772-16649963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               149
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               10, 36
               

               Conread position:
               3-200
               

               Cow position:
               chr10:68566333-68566146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               142
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               121, 36
               

               Conread position:
               3-211
               

               Cow position:
               chr10:34168033-34167839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               3-218
               

               Cow position:
               chr10:908112-907906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               153
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               121, 87
               

               Conread position:
               3-220
               

               Cow position:
               chr10:11497382-11497172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               121, 151
               

               Conread position:
               3-221
               

               Cow position:
               chr10:69544182-69544399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               94, 52
               

               Conread position:
               3-223
               

               Cow position:
               chr10:21447754-21447972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               121, 67
               

               Conread position:
               3-229
               

               Cow position:
               chr10:33240521-33240746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               3-237
               

               Cow position:
               chr10:20109790-20110014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               69, 37
               

               Conread position:
               3-238
               

               Cow position:
               chr10:9529835-9530058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               3-239
               

               Cow position:
               chr10:8649162-8648932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               211, 37
               

               Conread position:
               3-239
               

               Cow position:
               chr10:17553341-17553110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               9, 43
               

               Conread position:
               3-239
               

               Cow position:
               chr10:23404359-23404127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               121, 40
               

               Conread position:
               3-239
               

               Cow position:
               chr10:25479252-25479029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               167
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               121, 87
               

               Conread position:
               3-239
               

               Cow position:
               chr10:31368574-31368808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               20, 39
               

               Conread position:
               3-239
               

               Cow position:
               chr10:66311374-66311137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               11, 184
               

               Conread position:
               4-172
               

               Cow position:
               chr10:19601676-19601842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               118, 91
               

               Conread position:
               4-183
               

               Cow position:
               chr10:32560861-32560681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               120, 154
               

               Conread position:
               4-205
               

               Cow position:
               chr10:19704352-19704555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               164
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               4-225
               

               Cow position:
               chr10:68251971-68251757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               101, 28
               

               Conread position:
               4-238
               

               Cow position:
               chr10:6038184-6038409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               120, 41
               

               Conread position:
               4-238
               

               Cow position:
               chr10:69766523-69766761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               53, 233
               

               Conread position:
               4-239
               

               Cow position:
               chr10:53365194-53364951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               68, 28
               

               Conread position:
               5-165
               

               Cow position:
               chr10:49586307-49586469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               100, 104
               

               Conread position:
               5-201
               

               Cow position:
               chr10:4827864-4828058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               126, 148
               

               Conread position:
               5-220
               

               Cow position:
               chr10:27576614-27576402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               148
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               124, 150
               

               Conread position:
               5-239
               

               Cow position:
               chr10:51220918-51221138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               119, 38
               

               Conread position:
               6-163
               

               Cow position:
               chr10:41672355-41672520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               121
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               6-173
               

               Cow position:
               chr10:25618700-25618540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               6-237
               

               Cow position:
               chr10:26145253-26145490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               122, 60
               

               Conread position:
               6-239
               

               Cow position:
               chr10:19590606-19590838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               38, 52
               

               Conread position:
               6-239
               

               Cow position:
               chr10:22479569-22479798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               122, 75
               

               Conread position:
               6-239
               

               Cow position:
               chr10:30741532-30741305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               176
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               123, 34
               

               Conread position:
               6-239
               

               Cow position:
               chr10:41984729-41984962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               176
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               118, 208
               

               Conread position:
               7-239
               

               Cow position:
               chr10:50776862-50776634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               117, 65
               

               Conread position:
               9-147
               

               Cow position:
               chr10:64364372-64364232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               9-183
               

               Cow position:
               chr10:45299962-45299795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               115, 37
               

               Conread position:
               9-238
               

               Cow position:
               chr10:56705431-56705660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               118, 148
               

               Conread position:
               9-239
               

               Cow position:
               chr10:52589526-52589765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               11-221
               

               Cow position:
               chr10:29689180-29689390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               157
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               118, 62
               

               Conread position:
               11-226
               

               Cow position:
               chr10:45606281-45606487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               14-237
               

               Cow position:
               chr10:31250591-31250805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               110, 29
               

               Conread position:
               14-239
               

               Cow position:
               chr10:28038788-28039009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               159
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               110, 26
               

               Conread position:
               15-182
               

               Cow position:
               chr10:52069826-52069993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               109, 125
               

               Conread position:
               15-239
               

               Cow position:
               chr10:38429403-38429620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               110, 28
               

               Conread position:
               18-209
               

               Cow position:
               chr10:9794517-9794705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               107, 25
               

               Conread position:
               19-227
               

               Cow position:
               chr10:32584057-32583849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               146
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               105, 198
               

               Conread position:
               19-228
               

               Cow position:
               chr10:59153518-59153715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               154
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               105, 24
               

               Conread position:
               19-233
               

               Cow position:
               chr10:23096636-23096850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               101, 21
               

               Conread position:
               19-239
               

               Cow position:
               chr10:2406988-2407205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               53, 33
               

               Conread position:
               19-239
               

               Cow position:
               chr10:19126771-19126980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               19, 28
               

               Conread position:
               22-239
               

               Cow position:
               chr10:15873935-15874149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               111, 40
               

               Conread position:
               23-208
               

               Cow position:
               chr10:28492326-28492513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               135
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               104, 0
               

               Conread position:
               23-221
               

               Cow position:
               chr10:58746110-58746309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               147
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               99, 20
               

               Conread position:
               23-238
               

               Cow position:
               chr10:26620421-26620636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               101, 7
               

               Conread position:
               23-239
               

               Cow position:
               chr10:9568488-9568700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               158
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               102, 40
               

               Conread position:
               23-239
               

               Cow position:
               chr10:66874680-66874894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               101, 27
               

               Conread position:
               24-237
               

               Cow position:
               chr10:41771031-41771242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               100, 91
               

               Conread position:
               26-203
               

               Cow position:
               chr10:38449175-38449351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               32-216
               

               Cow position:
               chr10:53761991-53762168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               92, 11
               

               Conread position:
               34-205
               

               Cow position:
               chr10:8330748-8330575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               47, 126
               

               Conread position:
               36-237
               

               Cow position:
               chr10:36498338-36498141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               88, 72
               

               Conread position:
               37-233
               

               Cow position:
               chr10:6490637-6490833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               49, 44
               

               Conread position:
               46-239
               

               Cow position:
               chr10:68857543-68857737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               6, 35
               

               Conread position:
               51-186
               

               Cow position:
               chr10:65130372-65130506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               104
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               55-217
               

               Cow position:
               chr10:1478323-1478486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               69, 143
               

               Conread position:
               55-218
               

               Cow position:
               chr10:30449954-30450117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               120
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               79, 154
               

               Conread position:
               55-234
               

               Cow position:
               chr10:64721897-64722072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               126
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               147, 0
               

               Conread position:
               55-239
               

               Cow position:
               chr10:66753348-66753165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               128
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               70, 156
               

               Conread position:
               61-228
               

               Cow position:
               chr10:31855438-31855269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               64, 51
               

               Conread position:
               63-199
               

               Cow position:
               chr10:8077060-8077197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               102
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               82-218
               

               Cow position:
               chr10:19283989-19284124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               106
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               43, 107
               

               Conread position:
               1-140
               

               Cow position:
               chr11:41323097-41323234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               113
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               1-160
               

               Cow position:
               chr11:11460641-11460484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               124, 90
               

               Conread position:
               1-162
               

               Cow position:
               chr11:56796360-56796523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               1-165
               

               Cow position:
               chr11:40269429-40269590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               126, 35
               

               Conread position:
               1-180
               

               Cow position:
               chr11:6729837-6729656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               1-184
               

               Cow position:
               chr11:2393922-2394099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               61, 37
               

               Conread position:
               1-186
               

               Cow position:
               chr11:24216306-24216125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               136
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               119, 47
               

               Conread position:
               1-186
               

               Cow position:
               chr11:58112758-58112944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               97, 107
               

               Conread position:
               1-198
               

               Cow position:
               chr11:62573839-62574038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               112, 78
               

               Conread position:
               1-205
               

               Cow position:
               chr11:14045910-14046112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               119, 59
               

               Conread position:
               1-205
               

               Cow position:
               chr11:65958530-65958735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               11, 128
               

               Conread position:
               1-206
               

               Cow position:
               chr11:72869654-72869855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               140
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               1-208
               

               Cow position:
               chr11:19268923-19269121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               1-212
               

               Cow position:
               chr11:47125713-47125506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               104, 124
               

               Conread position:
               1-215
               

               Cow position:
               chr11:70400010-70399805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               152
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               14, 125
               

               Conread position:
               1-216
               

               Cow position:
               chr11:29802425-29802633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               94, 37
               

               Conread position:
               1-219
               

               Cow position:
               chr11:63156755-63156970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               127, 61
               

               Conread position:
               1-221
               

               Cow position:
               chr11:54244842-54244622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               166
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               195, 214
               

               Conread position:
               1-228
               

               Cow position:
               chr11:38845099-38845319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               127, 14
               

               Conread position:
               1-228
               

               Cow position:
               chr11:75874583-75874814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               156
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               78, 223
               

               Conread position:
               1-237
               

               Cow position:
               chr11:26468315-26468081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               25, 14
               

               Conread position:
               1-238
               

               Cow position:
               chr11:11752347-11752584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               178
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               119, 208
               

               Conread position:
               1-239
               

               Cow position:
               chr11:1596293-1596523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               110, 68
               

               Conread position:
               1-239
               

               Cow position:
               chr11:7001761-7002000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               126, 13
               

               Conread position:
               1-239
               

               Cow position:
               chr11:16342059-16342298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               79, 66
               

               Conread position:
               1-239
               

               Cow position:
               chr11:31507017-31506778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               123, 73
               

               Conread position:
               1-239
               

               Cow position:
               chr11:42519901-42519672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               124, 51
               

               Conread position:
               1-239
               

               Cow position:
               chr11:52832557-52832784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               181
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               126, 39
               

               Conread position:
               1-239
               

               Cow position:
               chr11:67871434-67871673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               123, 183
               

               Conread position:
               1-239
               

               Cow position:
               chr11:69402082-69402318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               176
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               123, 91
               

               Conread position:
               2-138
               

               Cow position:
               chr11:76851669-76851806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               2-154
               

               Cow position:
               chr11:54058159-54058006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               2-165
               

               Cow position:
               chr11:34136670-34136506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               120
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               2-167
               

               Cow position:
               chr11:40554004-40553842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               122, 12
               

               Conread position:
               2-186
               

               Cow position:
               chr11:34642068-34642246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               122, 25
               

               Conread position:
               2-186
               

               Cow position:
               chr11:60985114-60985294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               120, 38
               

               Conread position:
               2-195
               

               Cow position:
               chr11:30211073-30210877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               141
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               42, 53
               

               Conread position:
               2-216
               

               Cow position:
               chr11:76391858-76392064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               122, 38
               

               Conread position:
               2-225
               

               Cow position:
               chr11:35882079-35881859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               122, 181
               

               Conread position:
               2-227
               

               Cow position:
               chr11:12111287-12111511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               162
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               9, 110
               

               Conread position:
               2-229
               

               Cow position:
               chr11:43646242-43646472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               2-230
               

               Cow position:
               chr11:20491731-20491510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               123, 18
               

               Conread position:
               2-234
               

               Cow position:
               chr11:19502136-19501909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               2-238
               

               Cow position:
               chr11:53445938-53445710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               123, 41
               

               Conread position:
               2-239
               

               Cow position:
               chr11:19259344-19259582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               117, 213
               

               Conread position:
               2-239
               

               Cow position:
               chr11:21136982-21136745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               125, 168
               

               Conread position:
               2-239
               

               Cow position:
               chr11:37372479-37372241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               123, 198
               

               Conread position:
               2-239
               

               Cow position:
               chr11:43525953-43526195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               70, 135
               

               Conread position:
               2-239
               

               Cow position:
               chr11:62019417-62019660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               98, 89
               

               Conread position:
               2-239
               

               Cow position:
               chr11:67236563-67236333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               122, 36
               

               Conread position:
               3-155
               

               Cow position:
               chr11:22009219-22009373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               102, 119
               

               Conread position:
               3-172
               

               Cow position:
               chr11:29978166-29978340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               3-178
               

               Cow position:
               chr11:77008204-77008033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               18, 38
               

               Conread position:
               3-180
               

               Cow position:
               chr11:56821075-56821254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               3-186
               

               Cow position:
               chr11:13306656-13306836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               121, 152
               

               Conread position:
               3-193
               

               Cow position:
               chr11:54133920-54134109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               121, 78
               

               Conread position:
               3-198
               

               Cow position:
               chr11:4059896-4060088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               122, 12
               

               Conread position:
               3-201
               

               Cow position:
               chr11:19606479-19606286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               121, 92
               

               Conread position:
               3-213
               

               Cow position:
               chr11:62215025-62215237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               3-219
               

               Cow position:
               chr11:63508578-63508365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               125, 95
               

               Conread position:
               3-220
               

               Cow position:
               chr11:76404471-76404252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               12, 81
               

               Conread position:
               3-230
               

               Cow position:
               chr11:44815671-44815445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               124, 92
               

               Conread position:
               3-237
               

               Cow position:
               chr11:8828465-8828695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               121, 152
               

               Conread position:
               3-237
               

               Cow position:
               chr11:41272305-41272070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               174
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               121, 178
               

               Conread position:
               3-238
               

               Cow position:
               chr11:48983282-48983057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               16, 122
               

               Conread position:
               3-239
               

               Cow position:
               chr11:45890126-45889897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               174
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               124, 152
               

               Conread position:
               3-239
               

               Cow position:
               chr11:81518013-81518242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               122, 36
               

               Conread position:
               4-159
               

               Cow position:
               chr11:49218181-49218338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               4-237
               

               Cow position:
               chr11:31894438-31894209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               120, 151
               

               Conread position:
               4-238
               

               Cow position:
               chr11:9874479-9874252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               123, 91
               

               Conread position:
               4-238
               

               Cow position:
               chr11:32072309-32072083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               190, 102
               

               Conread position:
               4-239
               

               Cow position:
               chr11:16001092-16000860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               109, 150
               

               Conread position:
               4-239
               

               Cow position:
               chr11:28395642-28395405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               4-239
               

               Cow position:
               chr11:50953398-50953634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 10
               

               Conread position:
               4-239
               

               Cow position:
               chr11:51745509-51745288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               118, 36
               

               Conread position:
               5-96
               

               Cow position:
               chr11:84859078-84858988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               92
               

               Alignm identity:
               79
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               5-163
               

               Cow position:
               chr11:372979-373139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               118
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               5-211
               

               Cow position:
               chr11:40275436-40275642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               160
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               120, 197
               

               Conread position:
               5-211
               

               Cow position:
               chr11:40278928-40279134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               160
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               120, 197
               

               Conread position:
               5-215
               

               Cow position:
               chr11:65988386-65988180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               151
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               119, 33
               

               Conread position:
               5-218
               

               Cow position:
               chr11:24626003-24625797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               123, 38
               

               Conread position:
               5-225
               

               Cow position:
               chr11:17151836-17151620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               119, 148
               

               Conread position:
               5-227
               

               Cow position:
               chr11:21852130-21852360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               8, 224
               

               Conread position:
               5-228
               

               Cow position:
               chr11:18699055-18698821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               67, 227
               

               Conread position:
               5-238
               

               Cow position:
               chr11:84795587-84795817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               119, 27
               

               Conread position:
               5-239
               

               Cow position:
               chr11:9056122-9055891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               175
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               120, 50
               

               Conread position:
               5-239
               

               Cow position:
               chr11:9368991-9368759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               100, 139
               

               Conread position:
               6-165
               

               Cow position:
               chr11:5188290-5188133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               118, 55
               

               Conread position:
               6-180
               

               Cow position:
               chr11:44609724-44609554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               6-221
               

               Cow position:
               chr11:47193678-47193462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               166
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               118, 142
               

               Conread position:
               6-239
               

               Cow position:
               chr11:32438788-32439021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 84
               

               Conread position:
               9-233
               

               Cow position:
               chr11:19238006-19238218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               9-239
               

               Cow position:
               chr11:47565777-47566007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               113, 11
               

               Conread position:
               11-227
               

               Cow position:
               chr11:27722552-27722333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               11-229
               

               Cow position:
               chr11:6041595-6041807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               110, 29
               

               Conread position:
               11-238
               

               Cow position:
               chr11:50937579-50937815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               175
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               59, 183
               

               Conread position:
               11-238
               

               Cow position:
               chr11:52402622-52402396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               114, 33
               

               Conread position:
               11-239
               

               Cow position:
               chr11:53452190-53452415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               113, 144
               

               Conread position:
               14-216
               

               Cow position:
               chr11:14941454-14941651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               159
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               110, 141
               

               Conread position:
               14-227
               

               Cow position:
               chr11:27681657-27681443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               14-228
               

               Cow position:
               chr11:5648895-5648687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               113, 86
               

               Conread position:
               14-237
               

               Cow position:
               chr11:34945915-34946138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               111, 201
               

               Conread position:
               15-239
               

               Cow position:
               chr11:14308790-14308569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               113, 44
               

               Conread position:
               18-222
               

               Cow position:
               chr11:19586613-19586407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               50, 194
               

               Conread position:
               19-212
               

               Cow position:
               chr11:36701896-36701710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               106, 19
               

               Conread position:
               19-218
               

               Cow position:
               chr11:1668817-1668621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               105, 74
               

               Conread position:
               19-237
               

               Cow position:
               chr11:11785484-11785265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               165
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               79, 190
               

               Conread position:
               19-239
               

               Cow position:
               chr11:7684108-7683897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               202, 133
               

               Conread position:
               19-239
               

               Cow position:
               chr11:84890557-84890788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               53, 218
               

               Conread position:
               23-232
               

               Cow position:
               chr11:696201-696410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               101, 160
               

               Conread position:
               23-238
               

               Cow position:
               chr11:59365927-59366145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               104, 0
               

               Conread position:
               23-239
               

               Cow position:
               chr11:50951702-50951487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               175
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 72
               

               Conread position:
               25-239
               

               Cow position:
               chr11:25112372-25112587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               55, 90
               

               Conread position:
               26-163
               

               Cow position:
               chr11:76007523-76007385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               106
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               98, 117
               

               Conread position:
               26-186
               

               Cow position:
               chr11:35668301-35668471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               129
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               28-239
               

               Cow position:
               chr11:24243932-24243726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               163
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               16, 23
               

               Conread position:
               29-220
               

               Cow position:
               chr11:73499061-73499240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               95, 26
               

               Conread position:
               34-217
               

               Cow position:
               chr11:17452367-17452189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               130
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               90, 9
               

               Conread position:
               35-219
               

               Cow position:
               chr11:31422866-31422681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               142
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               40-223
               

               Cow position:
               chr11:61427723-61427540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               65, 69
               

               Conread position:
               40-237
               

               Cow position:
               chr11:39809119-39808925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               5, 30
               

               Conread position:
               49-239
               

               Cow position:
               chr11:60137811-60137626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               51-239
               

               Cow position:
               chr11:56892935-56892751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               21, 34
               

               Conread position:
               55-227
               

               Cow position:
               chr11:72082819-72082651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               69, 100
               

               Conread position:
               56-189
               

               Cow position:
               chr11:8232336-8232469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               102
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               72, 28
               

               Conread position:
               75-230
               

               Cow position:
               chr11:25861512-25861664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               49, 68
               

               Conread position:
               108-239
               

               Cow position:
               chr11:28691692-28691826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               102
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               1-115
               

               Cow position:
               chr12:35799381-35799266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               92
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               1-181
               

               Cow position:
               chr12:34090269-34090096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               120, 14
               

               Conread position:
               1-199
               

               Cow position:
               chr12:34849711-34849901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               121, 44
               

               Conread position:
               1-199
               

               Cow position:
               chr12:34852348-34852538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               121, 44
               

               Conread position:
               1-201
               

               Cow position:
               chr12:29691049-29691245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               123, 16
               

               Conread position:
               1-202
               

               Cow position:
               chr12:5497681-5497875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               124, 26
               

               Conread position:
               1-203
               

               Cow position:
               chr12:42918612-42918421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               121, 94
               

               Conread position:
               1-208
               

               Cow position:
               chr12:18094038-18093834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               109, 103
               

               Conread position:
               1-214
               

               Cow position:
               chr12:45225841-45226052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               56, 84
               

               Conread position:
               1-215
               

               Cow position:
               chr12:1883390-1883595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               158
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               123, 32
               

               Conread position:
               1-218
               

               Cow position:
               chr12:39781192-39781408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               172
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               124, 72
               

               Conread position:
               1-228
               

               Cow position:
               chr12:47486985-47486752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               1-229
               

               Cow position:
               chr12:30210636-30210401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               74, 13
               

               Conread position:
               1-237
               

               Cow position:
               chr12:25619230-25619459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               130, 80
               

               Conread position:
               1-238
               

               Cow position:
               chr12:7996559-7996325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               124, 94
               

               Conread position:
               1-239
               

               Cow position:
               chr12:1031132-1030890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               11, 150
               

               Conread position:
               1-239
               

               Cow position:
               chr12:15230673-15230905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               119, 14
               

               Conread position:
               1-239
               

               Cow position:
               chr12:17109749-17109978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               123, 14
               

               Conread position:
               1-239
               

               Cow position:
               chr12:18768924-18769161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               71, 56
               

               Conread position:
               1-239
               

               Cow position:
               chr12:24559507-24559268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               175
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               121, 215
               

               Conread position:
               1-239
               

               Cow position:
               chr12:34465851-34466095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               162
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               81, 196
               

               Conread position:
               1-239
               

               Cow position:
               chr12:40931468-40931702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               104, 14
               

               Conread position:
               2-140
               

               Cow position:
               chr12:15066970-15066830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               104
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               2-185
               

               Cow position:
               chr12:25933827-25933648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               137
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               123, 13
               

               Conread position:
               2-199
               

               Cow position:
               chr12:44908163-44907966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               115, 151
               

               Conread position:
               2-227
               

               Cow position:
               chr12:5680831-5680604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               122, 221
               

               Conread position:
               2-228
               

               Cow position:
               chr12:31429426-31429647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               122, 70
               

               Conread position:
               2-233
               

               Cow position:
               chr12:18966610-18966837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               122, 18
               

               Conread position:
               2-238
               

               Cow position:
               chr12:33458287-33458058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               167
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               122, 61
               

               Conread position:
               2-239
               

               Cow position:
               chr12:23983811-23983573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               77, 145
               

               Conread position:
               3-170
               

               Cow position:
               chr12:11080953-11081121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               3-189
               

               Cow position:
               chr12:16850770-16850954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               125, 11
               

               Conread position:
               3-203
               

               Cow position:
               chr12:1505162-1504969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               121, 48
               

               Conread position:
               3-208
               

               Cow position:
               chr12:24529240-24529438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               121, 96
               

               Conread position:
               3-214
               

               Cow position:
               chr12:5899653-5899460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               3-226
               

               Cow position:
               chr12:47804300-47804079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               101, 67
               

               Conread position:
               3-227
               

               Cow position:
               chr12:5538827-5539043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               126, 38
               

               Conread position:
               3-239
               

               Cow position:
               chr12:749504-749279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               205, 71
               

               Conread position:
               3-239
               

               Cow position:
               chr12:5658600-5658837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               121, 140
               

               Conread position:
               3-239
               

               Cow position:
               chr12:27055748-27055517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               186
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               121, 11
               

               Conread position:
               3-239
               

               Cow position:
               chr12:42478155-42477924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               121, 12
               

               Conread position:
               4-178
               

               Cow position:
               chr12:11520318-11520147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               97, 66
               

               Conread position:
               4-215
               

               Cow position:
               chr12:10763409-10763190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               71, 10
               

               Conread position:
               4-239
               

               Cow position:
               chr12:25606852-25606614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               162
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               4-239
               

               Cow position:
               chr12:29448790-29448556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               186
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               8, 37
               

               Conread position:
               4-239
               

               Cow position:
               chr12:48425855-48425624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               118, 136
               

               Conread position:
               5-123
               

               Cow position:
               chr12:38096268-38096149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               99
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               5-184
               

               Cow position:
               chr12:16205868-16205692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               129
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               85, 38
               

               Conread position:
               5-195
               

               Cow position:
               chr12:14855957-14855769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               134
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               31, 152
               

               Conread position:
               5-208
               

               Cow position:
               chr12:7645666-7645862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               119, 38
               

               Conread position:
               5-239
               

               Cow position:
               chr12:6688048-6687803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               26, 238
               

               Conread position:
               5-239
               

               Cow position:
               chr12:25312231-25312459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               120, 55
               

               Conread position:
               6-228
               

               Cow position:
               chr12:30065076-30064860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               23, 37
               

               Conread position:
               9-239
               

               Cow position:
               chr12:4583082-4582856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               113, 31
               

               Conread position:
               10-234
               

               Cow position:
               chr12:41642571-41642346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               99, 85
               

               Conread position:
               11-198
               

               Cow position:
               chr12:34242187-34242375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               12-221
               

               Cow position:
               chr12:17262986-17262783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               117, 26
               

               Conread position:
               14-149
               

               Cow position:
               chr12:24681954-24681818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               111
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               106, 66
               

               Conread position:
               14-208
               

               Cow position:
               chr12:3816622-3816425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               14-221
               

               Cow position:
               chr12:16543443-16543653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               71, 20
               

               Conread position:
               14-227
               

               Cow position:
               chr12:30596604-30596388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               168
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               110, 213
               

               Conread position:
               14-229
               

               Cow position:
               chr12:44057652-44057441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               27, 83
               

               Conread position:
               15-230
               

               Cow position:
               chr12:12331375-12331591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               106, 168
               

               Conread position:
               15-239
               

               Cow position:
               chr12:3616136-3615912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               155
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               57, 158
               

               Conread position:
               16-200
               

               Cow position:
               chr12:31258140-31257968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               17-186
               

               Cow position:
               chr12:10846522-10846685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               13, 32
               

               Conread position:
               20-186
               

               Cow position:
               chr12:43671831-43671670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               107, 53
               

               Conread position:
               22-233
               

               Cow position:
               chr12:32413645-32413429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               24-234
               

               Cow position:
               chr12:4020364-4020575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               93, 136
               

               Conread position:
               27-239
               

               Cow position:
               chr12:31198887-31198676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               78, 7
               

               Conread position:
               29-205
               

               Cow position:
               chr12:31528735-31528912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               76, 80
               

               Conread position:
               30-177
               

               Cow position:
               chr12:27038623-27038770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               110
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               94, 118
               

               Conread position:
               40-201
               

               Cow position:
               chr12:13657634-13657796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               1-123
               

               Cow position:
               chr13:7332143-7332264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               94
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               1-135
               

               Cow position:
               chr13:19239219-19239354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               104
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               119, 73
               

               Conread position:
               1-153
               

               Cow position:
               chr13:26507732-26507886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               111
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               1-164
               

               Cow position:
               chr13:9501794-9501624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               12, 120
               

               Conread position:
               1-186
               

               Cow position:
               chr13:18665538-18665720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               123, 14
               

               Conread position:
               1-189
               

               Cow position:
               chr13:17991457-17991642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               136
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               126, 154
               

               Conread position:
               1-189
               

               Cow position:
               chr13:47502910-47502726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               126, 72
               

               Conread position:
               1-201
               

               Cow position:
               chr13:49457483-49457681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               143
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               123, 73
               

               Conread position:
               1-202
               

               Cow position:
               chr13:9802867-9803064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               127, 48
               

               Conread position:
               1-208
               

               Cow position:
               chr13:29820408-29820200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               158
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               104, 97
               

               Conread position:
               1-214
               

               Cow position:
               chr13:12521980-12521766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               1-215
               

               Cow position:
               chr13:32718064-32717851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               164
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               124, 14
               

               Conread position:
               1-223
               

               Cow position:
               chr13:17796166-17796388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               64, 42
               

               Conread position:
               1-227
               

               Cow position:
               chr13:20156285-20156506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               156
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               123, 154
               

               Conread position:
               1-230
               

               Cow position:
               chr13:12233655-12233422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 219
               

               Conread position:
               1-238
               

               Cow position:
               chr13:1958806-1959044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               1-239
               

               Cow position:
               chr13:2803267-2803507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               113, 73
               

               Conread position:
               1-239
               

               Cow position:
               chr13:9083200-9082972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               124, 36
               

               Conread position:
               1-239
               

               Cow position:
               chr13:11768246-11768007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 215
               

               Conread position:
               1-239
               

               Cow position:
               chr13:22075469-22075707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               177
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               120, 152
               

               Conread position:
               1-239
               

               Cow position:
               chr13:25537418-25537661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               58, 77
               

               Conread position:
               1-239
               

               Cow position:
               chr13:33161195-33160960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               207, 124
               

               Conread position:
               1-239
               

               Cow position:
               chr13:34761483-34761714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               124, 80
               

               Conread position:
               1-239
               

               Cow position:
               chr13:46284809-46284580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               124, 43
               

               Conread position:
               1-239
               

               Cow position:
               chr13:47188242-47188478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               170
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               190, 39
               

               Conread position:
               1-239
               

               Cow position:
               chr13:50738970-50739200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               171
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               123, 14
               

               Conread position:
               1-239
               

               Cow position:
               chr13:52966673-52966908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               14, 100
               

               Conread position:
               2-154
               

               Cow position:
               chr13:6927106-6927255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               122, 50
               

               Conread position:
               2-164
               

               Cow position:
               chr13:57341491-57341330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               123, 117
               
2-204UCSC Genome Browser
               Conread position:
               
               

               Cow position:
               chr13:58621145-58620944 (view  custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               119, 93
               
2-209UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr13:661837-661637 (view  custom track)

               
               
               
Alignm length: 209

               
               
               
Alignm identity: 155

               
               
               
Alignm E-value: 1e-33

               
               
               
Alignm gaps (pig, cow): 122, 94
2-210UCSC Genome Browser
               
               
               
Conread position: 

               
               
               
Cow position: chr13:43167232-43167024 (view  custom track)

               
               
               
Alignm length: 210

               
               
               
Alignm identity: 156

               
               
               
Alignm E-value: 7e-38

               
               
               
Alignm gaps (pig, cow): 122, 159

               
               
               Conread position:2-217
               
               
               Cow position:chr13:33975232-33975441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):125, 71

               
               
               Conread position:2-218
               
               
               Cow position:chr13:22887190-22886977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):125, 153

               
               
               Conread position:2-219
               
               
               Cow position:chr13:26523137-26522919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):125, 28

               
               
               Conread position:2-219
               
               
               Cow position:chr13:54815114-54814896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):32, 165

               
               
               Conread position:2-226
               
               
               Cow position:chr13:9161717-9161948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):75, 12

               
               
               Conread position:2-227
               
               
               Cow position:chr13:7010275-7010494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):220, 38

               
               
               Conread position:2-228
               
               
               Cow position:chr13:14717540-14717313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 83

               
               
               Conread position:2-228
               
               
               Cow position:chr13:32535458-32535682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):83, 18

               
               
               Conread position:2-228
               
               
               Cow position:chr13:43156056-43155829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:2-237
               
               
               Cow position:chr13:54094609-54094846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):118, 232

               
               
               Conread position:2-239
               
               
               Cow position:chr13:10932355-10932589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):125, 81

               
               
               Conread position:2-239
               
               
               Cow position:chr13:11794251-11794475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:2-239
               
               
               Cow position:chr13:30271123-30271359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):122, 69

               
               
               Conread position:2-239
               
               
               Cow position:chr13:34995530-34995289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:3-149
               
               
               Cow position:chr13:56270439-56270289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:3-149
               
               
               Cow position:chr13:56281033-56281183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:3-176
               
               
               Cow position:chr13:62267424-62267249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):17, 11

               
               
               Conread position:3-209
               
               
               Cow position:chr13:15144048-15143835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):70, 156

               
               
               Conread position:3-228
               
               
               Cow position:chr13:32657184-32657404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):72, 11

               
               
               Conread position:3-239
               
               
               Cow position:chr13:6621790-6621554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):116, 31

               
               
               Conread position:3-239
               
               
               Cow position:chr13:8245531-8245297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):121, 150

               
               
               Conread position:3-239
               
               
               Cow position:chr13:9664865-9665096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):125, 54

               
               
               Conread position:3-239
               
               
               Cow position:chr13:13578235-13577996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):9, 111

               
               
               Conread position:3-239
               
               
               Cow position:chr13:15091107-15090873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):205, 40

               
               
               Conread position:3-239
               
               
               Cow position:chr13:15945276-15945519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):75, 228

               
               
               Conread position:3-239
               
               
               Cow position:chr13:18761927-18761697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):204, 11

               
               
               Conread position:3-239
               
               
               Cow position:chr13:20180216-20180450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):122, 101

               
               
               Conread position:3-239
               
               
               Cow position:chr13:38631780-38631540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):31, 146

               
               
               Conread position:3-239
               
               
               Cow position:chr13:46430493-46430268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):122, 40

               
               
               Conread position:3-239
               
               
               Cow position:chr13:49200441-49200671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):117, 32

               
               
               Conread position:4-140
               
               
               Cow position:chr13:23048008-23047870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:4-154
               
               
               Cow position:chr13:46291457-46291611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:4-180
               
               
               Cow position:chr13:58614989-58615167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:4-189
               
               
               Cow position:chr13:11463548-11463369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):120, 91

               
               
               Conread position:4-194
               
               
               Cow position:chr13:14209697-14209906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:4-198
               
               
               Cow position:chr13:8822671-8822859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:4-223
               
               
               Cow position:chr13:20839364-20839589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:4-228
               
               
               Cow position:chr13:47322608-47322383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):120, 22

               
               
               Conread position:4-237
               
               
               Cow position:chr13:12323986-12324216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):118, 134

               
               
               Conread position:4-239
               
               
               Cow position:chr13:12745474-12745709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):73, 28

               
               
               Conread position:4-239
               
               
               Cow position:chr13:25435322-25435085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:4-239
               
               
               Cow position:chr13:34664932-34665164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):127, 149

               
               
               Conread position:5-200
               
               
               Cow position:chr13:1558711-1558519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):107, 85

               
               
               Conread position:5-237
               
               
               Cow position:chr13:30509868-30510092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:5-239
               
               
               Cow position:chr13:9125474-9125702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):119, 29

               
               
               Conread position:5-239
               
               
               Cow position:chr13:21563530-21563776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 50

               
               
               Conread position:5-239
               
               
               Cow position:chr13:29814355-29814576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:6-163
               
               
               Cow position:chr13:54564834-54564675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:7-239
               
               
               Cow position:chr13:17886322-17886543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:9-208
               
               
               Cow position:chr13:32904587-32904785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):96, 5

               
               
               Conread position:9-239
               
               
               Cow position:chr13:32167504-32167279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):21, 8

               
               
               Conread position:10-239
               
               
               Cow position:chr13:52251992-52251767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):95, 51

               
               
               Conread position:11-202
               
               
               Cow position:chr13:18550813-18551001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):114, 146

               
               
               Conread position:11-206
               
               
               Cow position:chr13:31852576-31852767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):117, 32

               
               
               Conread position:14-166
               
               
               Cow position:chr13:58762789-58762636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:14-217
               
               
               Cow position:chr13:13446343-13446138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 90

               
               
               Conread position:14-218
               
               
               Cow position:chr13:40464041-40464243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):108, 139

               
               
               Conread position:15-161
               
               
               Cow position:chr13:34689743-34689891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:15-189
               
               
               Cow position:chr13:20825844-20826013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):109, 119

               
               
               Conread position:15-238
               
               
               Cow position:chr13:58347898-58348115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):109, 56

               
               
               Conread position:16-202
               
               
               Cow position:chr13:14099297-14099115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):54, 27

               
               
               Conread position:19-208
               
               
               Cow position:chr13:16952285-16952473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 136

               
               
               Conread position:19-226
               
               
               Cow position:chr13:20466469-20466262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):101, 159

               
               
               Conread position:19-234
               
               
               Cow position:chr13:21888374-21888157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):45, 24

               
               
               Conread position:19-234
               
               
               Cow position:chr13:49847743-49847955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:19-238
               
               
               Cow position:chr13:17346628-17346839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):100, 24

               
               
               Conread position:19-239
               
               
               Cow position:chr13:23265548-23265769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):26, 189

               
               
               Conread position:20-230
               
               
               Cow position:chr13:14220316-14220515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):99, 22

               
               
               Conread position:20-239
               
               
               Cow position:chr13:21628063-21627848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):104, 75

               
               
               Conread position:20-239
               
               
               Cow position:chr13:52748977-52748761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):102, 135

               
               
               Conread position:22-229
               
               
               Cow position:chr13:38898426-38898219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 82

               
               
               Conread position:23-224
               
               
               Cow position:chr13:52569183-52568980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):97, 194

               
               
               Conread position:23-228
               
               
               Cow position:chr13:33281826-33282033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):101, 146

               
               
               Conread position:23-239
               
               
               Cow position:chr13:54969985-54969767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):75, 64

               
               
               Conread position:23-239
               
               
               Cow position:chr13:60651086-60650868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):57, 181

               
               
               Conread position:26-172
               
               
               Cow position:chr13:11171061-11171206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):80, 36

               
               
               Conread position:33-165
               
               
               Cow position:chr13:21403578-21403446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):91, 102

               
               
               Conread position:33-239
               
               
               Cow position:chr13:33346966-33347162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:34-189
               
               
               Cow position:chr13:22082223-22082373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:34-208
               
               
               Cow position:chr13:58324223-58324401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:38-212
               
               
               Cow position:chr13:24280092-24280269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:40-225
               
               
               Cow position:chr13:11834640-11834457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):65, 20

               
               
               Conread position:43-204
               
               
               Cow position:chr13:26508324-26508480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):81, 112

               
               
               Conread position:43-239
               
               
               Cow position:chr13:53788268-53788071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):58, 66

               
               
               Conread position:44-193
               
               
               Cow position:chr13:46353672-46353526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 111

               
               
               Conread position:49-238
               
               
               Cow position:chr13:35719291-35719105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):76, 108

               
               
               Conread position:57-221
               
               
               Cow position:chr13:3016319-3016155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):67, 119

               
               
               Conread position:57-239
               
               
               Cow position:chr13:33955171-33954995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):68, 100

               
               
               Conread position:74-239
               
               
               Cow position:chr13:54080943-54080777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:78-237
               
               
               Cow position:chr13:18350711-18350873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 79

               
               
               Conread position:1-96
               
               
               Cow position:chr14:12484904-12484809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:82
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-140
               
               
               Cow position:chr14:43314839-43314978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-162
               
               
               Cow position:chr14:47600550-47600389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):104, 94

               
               
               Conread position:1-186
               
               
               Cow position:chr14:26153413-26153228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 154

               
               
               Conread position:1-186
               
               
               Cow position:chr14:37624913-37624732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):126, 29

               
               
               Conread position:1-225
               
               
               Cow position:chr14:37884544-37884329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):221, 91

               
               
               Conread position:1-228
               
               
               Cow position:chr14:44861375-44861154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):123, 13

               
               
               Conread position:1-229
               
               
               Cow position:chr14:13809791-13810020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 191

               
               
               Conread position:1-234
               
               
               Cow position:chr14:39058432-39058669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:1-237
               
               
               Cow position:chr14:6985097-6984874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):124, 42

               
               
               Conread position:1-237
               
               
               Cow position:chr14:20865453-20865227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):32, 72

               
               
               Conread position:2-148
               
               
               Cow position:chr14:46114301-46114149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:2-186
               
               
               Cow position:chr14:44031891-44032077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:2-205
               
               
               Cow position:chr14:48212940-48213141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 51

               
               
               Conread position:2-216
               
               
               Cow position:chr14:26960557-26960345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):122, 37

               
               
               Conread position:2-217
               
               
               Cow position:chr14:7648164-7647946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:2-237
               
               
               Cow position:chr14:23008046-23008267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:2-238
               
               
               Cow position:chr14:8488053-8488277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):122, 91

               
               
               Conread position:2-239
               
               
               Cow position:chr14:2189492-2189727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:2-239
               
               
               Cow position:chr14:43031654-43031891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):122, 19

               
               
               Conread position:3-91
               
               
               Cow position:chr14:49552565-49552653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:89
               
               
               Alignm identity:76
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-140
               
               
               Cow position:chr14:10906589-10906724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):119, 11

               
               
               Conread position:3-142
               
               
               Cow position:chr14:24626096-24625955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):111, 40

               
               
               Conread position:3-197
               
               
               Cow position:chr14:41531805-41531612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):121, 92

               
               
               Conread position:3-199
               
               
               Cow position:chr14:6582853-6583051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):42, 157

               
               
               Conread position:3-216
               
               
               Cow position:chr14:20701958-20701748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:3-237
               
               
               Cow position:chr14:6441765-6442001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:3-237
               
               
               Cow position:chr14:7813709-7813480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):121, 92

               
               
               Conread position:3-239
               
               
               Cow position:chr14:10692403-10692174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):125, 37

               
               
               Conread position:3-239
               
               
               Cow position:chr14:20429432-20429674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):41, 200

               
               
               Conread position:3-239
               
               
               Cow position:chr14:23107177-23107419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):45, 27

               
               
               Conread position:3-239
               
               
               Cow position:chr14:26108491-26108727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 57

               
               
               Conread position:3-239
               
               
               Cow position:chr14:38355047-38355278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):121, 58

               
               
               Conread position:4-123
               
               
               Cow position:chr14:7613922-7614039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:4-140
               
               
               Cow position:chr14:38688373-38688240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:4-186
               
               
               Cow position:chr14:9065752-9065934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):124, 56

               
               
               Conread position:4-205
               
               
               Cow position:chr14:47519893-47519692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):124, 94

               
               
               Conread position:4-213
               
               
               Cow position:chr14:19023039-19022830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:165
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):8, 58

               
               
               Conread position:4-227
               
               
               Cow position:chr14:26493731-26493958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):76, 62

               
               
               Conread position:4-228
               
               
               Cow position:chr14:28605091-28605315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):68, 84

               
               
               Conread position:4-228
               
               
               Cow position:chr14:47604436-47604216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):121, 36

               
               
               Conread position:5-181
               
               
               Cow position:chr14:20795637-20795809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):120, 34

               
               
               Conread position:5-188
               
               
               Cow position:chr14:36081055-36080875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):122, 150

               
               
               Conread position:5-237
               
               
               Cow position:chr14:21691416-21691183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:5-238
               
               
               Cow position:chr14:27103945-27104172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):119, 16

               
               
               Conread position:6-239
               
               
               Cow position:chr14:29860738-29860961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:6-239
               
               
               Cow position:chr14:37679142-37678910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):119, 61

               
               
               Conread position:9-239
               
               
               Cow position:chr14:11615358-11615126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:9-239
               
               
               Cow position:chr14:45849354-45849128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):7, 101

               
               
               Conread position:10-238
               
               
               Cow position:chr14:13928258-13928031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:11-175
               
               
               Cow position:chr14:26805186-26805020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:11-181
               
               
               Cow position:chr14:47693564-47693731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):113, 84

               
               
               Conread position:11-225
               
               
               Cow position:chr14:28565342-28565549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):113, 16

               
               
               Conread position:11-228
               
               
               Cow position:chr14:37333566-37333775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):30, 59

               
               
               Conread position:11-239
               
               
               Cow position:chr14:35700294-35700518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):113, 142

               
               
               Conread position:12-208
               
               
               Cow position:chr14:21369235-21369427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 52

               
               
               Conread position:13-237
               
               
               Cow position:chr14:12559609-12559390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):112, 49

               
               
               Conread position:14-159
               
               
               Cow position:chr14:11581934-11582074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):110, 31

               
               
               Conread position:14-216
               
               
               Cow position:chr14:6789254-6789454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):111, 65

               
               
               Conread position:14-230
               
               
               Cow position:chr14:18979324-18979114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):114, 46

               
               
               Conread position:19-239
               
               
               Cow position:chr14:33553069-33553277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):10, 26

               
               
               Conread position:19-239
               
               
               Cow position:chr14:47973858-47974074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):105, 130

               
               
               Conread position:20-238
               
               
               Cow position:chr14:18449133-18448920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):37, 7

               
               
               Conread position:22-239
               
               
               Cow position:chr14:20045428-20045644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):103, 34

               
               
               Conread position:23-158
               
               
               Cow position:chr14:20284031-20284168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:23-216
               
               
               Cow position:chr14:47551396-47551207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):101, 22

               
               
               Conread position:24-239
               
               
               Cow position:chr14:47027493-47027276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):99, 110

               
               
               Conread position:26-228
               
               
               Cow position:chr14:15990105-15990298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):98, 54

               
               
               Conread position:36-195
               
               
               Cow position:chr14:46393090-46393246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 39

               
               
               Conread position:42-228
               
               
               Cow position:chr14:21084237-21084424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:55-239
               
               
               Cow position:chr14:44595214-44595033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):72, 98

               
               
               Conread position:59-239
               
               
               Cow position:chr14:20435305-20435487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:62-201
               
               
               Cow position:chr14:28327206-28327068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):63, 12

               
               
               Conread position:66-239
               
               
               Cow position:chr14:31784890-31785059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):62, 13

               
               
               Conread position:1-158
               
               
               Cow position:chr15:48013545-48013387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):104, 86

               
               
               Conread position:1-167
               
               
               Cow position:chr15:20402640-20402476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):127, 13

               
               
               Conread position:1-177
               
               
               Cow position:chr15:39916594-39916769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):103, 108

               
               
               Conread position:1-186
               
               
               Cow position:chr15:7980093-7980273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):123, 90

               
               
               Conread position:1-187
               
               
               Cow position:chr15:10189268-10189448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):123, 41

               
               
               Conread position:1-206
               
               
               Cow position:chr15:24411323-24411527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):119, 149

               
               
               Conread position:1-208
               
               
               Cow position:chr15:30958308-30958105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):123, 39

               
               
               Conread position:1-212
               
               
               Cow position:chr15:450148-449939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):205, 72

               
               
               Conread position:1-215
               
               
               Cow position:chr15:23992752-23992964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):123, 152

               
               
               Conread position:1-216
               
               
               Cow position:chr15:20282606-20282404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):127, 39

               
               
               Conread position:1-217
               
               
               Cow position:chr15:37918548-37918770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-221
               
               
               Cow position:chr15:35967585-35967362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):13, 46

               
               
               Conread position:1-229
               
               
               Cow position:chr15:33624855-33625084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 78

               
               
               Conread position:1-234
               
               
               Cow position:chr15:11957443-11957674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):42, 17

               
               
               Conread position:1-234
               
               
               Cow position:chr15:17788014-17788242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):124, 13

               
               
               Conread position:1-237
               
               
               Cow position:chr15:6491690-6491454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):126, 192

               
               
               Conread position:1-238
               
               
               Cow position:chr15:9494394-9494156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 16

               
               
               Conread position:1-239
               
               
               Cow position:chr15:3571686-3571920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):128, 39

               
               
               Conread position:1-239
               
               
               Cow position:chr15:8021958-8022190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):128, 42

               
               
               Conread position:1-239
               
               
               Cow position:chr15:14758347-14758114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):97, 148

               
               
               Conread position:2-223
               
               
               Cow position:chr15:25688869-25689089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):122, 43

               
               
               Conread position:2-228
               
               
               Cow position:chr15:4508054-4508276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):121, 52

               
               
               Conread position:2-228
               
               
               Cow position:chr15:34255815-34255599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):126, 41

               
               
               Conread position:2-229
               
               
               Cow position:chr15:1017845-1017615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 99

               
               
               Conread position:2-234
               
               
               Cow position:chr15:31599241-31599466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):122, 21

               
               
               Conread position:2-234
               
               
               Cow position:chr15:31907556-31907781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:2-237
               
               
               Cow position:chr15:44879510-44879739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:2-238
               
               
               Cow position:chr15:15214920-15215160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:2-239
               
               
               Cow position:chr15:8230659-8230425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):122, 38

               
               
               Conread position:2-239
               
               
               Cow position:chr15:24977270-24977040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):122, 69

               
               
               Conread position:2-239
               
               
               Cow position:chr15:27247408-27247640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):13, 132

               
               
               Conread position:3-154
               
               
               Cow position:chr15:2117789-2117940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):121, 67

               
               
               Conread position:3-173
               
               
               Cow position:chr15:51361128-51361300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:3-180
               
               
               Cow position:chr15:31483273-31483452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:3-191
               
               
               Cow position:chr15:19323227-19323413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 105

               
               
               Conread position:3-201
               
               
               Cow position:chr15:50177013-50177213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:3-208
               
               
               Cow position:chr15:17213367-17213563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):122, 17

               
               
               Conread position:3-208
               
               
               Cow position:chr15:19725805-19725610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):193, 104

               
               
               Conread position:3-208
               
               
               Cow position:chr15:20777922-20778127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):125, 17

               
               
               Conread position:3-221
               
               
               Cow position:chr15:26934045-26933826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:3-223
               
               
               Cow position:chr15:23109379-23109158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:3-228
               
               
               Cow position:chr15:34037282-34037061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):121, 35

               
               
               Conread position:3-229
               
               
               Cow position:chr15:42195357-42195136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):73, 40

               
               
               Conread position:3-239
               
               
               Cow position:chr15:3572793-3572563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):122, 11

               
               
               Conread position:3-239
               
               
               Cow position:chr15:22886462-22886688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):122, 140

               
               
               Conread position:3-239
               
               
               Cow position:chr15:50322497-50322734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 54

               
               
               Conread position:4-166
               
               
               Cow position:chr15:2201209-2201373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 93

               
               
               Conread position:4-173
               
               
               Cow position:chr15:25111339-25111167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):96, 22

               
               
               Conread position:4-185
               
               
               Cow position:chr15:52480040-52480215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):108, 34

               
               
               Conread position:4-194
               
               
               Cow position:chr15:23548082-23547897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):125, 39

               
               
               Conread position:4-217
               
               
               Cow position:chr15:24284891-24285098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):120, 11

               
               
               Conread position:4-222
               
               
               Cow position:chr15:39200689-39200903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):124, 69

               
               
               Conread position:4-223
               
               
               Cow position:chr15:14020384-14020613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:4-239
               
               
               Cow position:chr15:47821285-47821514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):118, 11

               
               
               Conread position:5-217
               
               
               Cow position:chr15:44296996-44297200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):120, 64

               
               
               Conread position:5-225
               
               
               Cow position:chr15:43611990-43612209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:5-229
               
               
               Cow position:chr15:12170150-12170376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):117, 170

               
               
               Conread position:5-233
               
               
               Cow position:chr15:49238082-49237859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):119, 10

               
               
               Conread position:5-239
               
               
               Cow position:chr15:6749938-6749709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):119, 9

               
               
               Conread position:5-239
               
               
               Cow position:chr15:39894504-39894726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:6-239
               
               
               Cow position:chr15:20482939-20482707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 14

               
               
               Conread position:6-239
               
               
               Cow position:chr15:44252273-44252502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):116, 89

               
               
               Conread position:9-237
               
               
               Cow position:chr15:24864353-24864132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):116, 34

               
               
               Conread position:9-237
               
               
               Cow position:chr15:27863416-27863188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):116, 217

               
               
               Conread position:11-120
               
               
               Cow position:chr15:52389505-52389614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-228
               
               
               Cow position:chr15:20370809-20370599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):115, 81

               
               
               Conread position:14-234
               
               
               Cow position:chr15:10570698-10570480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):110, 81

               
               
               Conread position:15-237
               
               
               Cow position:chr15:9971062-9970839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):109, 155

               
               
               Conread position:18-221
               
               
               Cow position:chr15:31545429-31545225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:18-226
               
               
               Cow position:chr15:31617087-31616880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):109, 193

               
               
               Conread position:18-228
               
               
               Cow position:chr15:35283546-35283338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):111, 25

               
               
               Conread position:19-176
               
               
               Cow position:chr15:7059484-7059327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 40

               
               
               Conread position:19-202
               
               
               Cow position:chr15:10569185-10569005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):106, 26

               
               
               Conread position:20-217
               
               
               Cow position:chr15:10303143-10303341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:21-213
               
               
               Cow position:chr15:36659192-36659004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):17, 136

               
               
               Conread position:22-239
               
               
               Cow position:chr15:40498366-40498152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:166
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):103, 23

               
               
               Conread position:23-239
               
               
               Cow position:chr15:21836613-21836820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):97, 64

               
               
               Conread position:28-167
               
               
               Cow position:chr15:28177383-28177523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 8

               
               
               Conread position:29-239
               
               
               Cow position:chr15:53045947-53045739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):114, 103

               
               
               Conread position:31-239
               
               
               Cow position:chr15:7962014-7962218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):193, 74

               
               
               Conread position:41-239
               
               
               Cow position:chr15:19280150-19279949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 147

               
               
               Conread position:43-239
               
               
               Cow position:chr15:9000903-9001091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:43-239
               
               
               Cow position:chr15:26421655-26421461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):7, 116

               
               
               Conread position:44-239
               
               
               Cow position:chr15:9178257-9178070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):83, 111

               
               
               Conread position:55-225
               
               
               Cow position:chr15:38322791-38322960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):70, 155

               
               
               Conread position:59-224
               
               
               Cow position:chr15:32011905-32011743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):148, 59

               
               
               Conread position:59-233
               
               
               Cow position:chr15:40117488-40117313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):69, 77

               
               
               Conread position:61-185
               
               
               Cow position:chr15:17911104-17911230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:64-180
               
               
               Cow position:chr15:35663415-35663532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:75-229
               
               
               Cow position:chr15:46005672-46005522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):50, 82

               
               
               Conread position:93-239
               
               
               Cow position:chr15:27732408-27732552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):32, 11

               
               
               Conread position:1-113
               
               
               Cow position:chr16:48542025-48542136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:1-146
               
               
               Cow position:chr16:55070332-55070480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:1-147
               
               
               Cow position:chr16:11772063-11772209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):104, 13

               
               
               Conread position:1-212
               
               
               Cow position:chr16:8025664-8025880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):71, 19

               
               
               Conread position:1-216
               
               
               Cow position:chr16:44722850-44723058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):127, 14

               
               
               Conread position:1-219
               
               
               Cow position:chr16:2618800-2619011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):126, 150

               
               
               Conread position:1-221
               
               
               Cow position:chr16:47909155-47909379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:1-223
               
               
               Cow position:chr16:22808368-22808593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 191

               
               
               Conread position:1-223
               
               
               Cow position:chr16:29655520-29655287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:1-223
               
               
               Cow position:chr16:41689878-41689657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):121, 71

               
               
               Conread position:1-233
               
               
               Cow position:chr16:10857436-10857667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):132, 94

               
               
               Conread position:1-234
               
               
               Cow position:chr16:44551-44325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):170, 101

               
               
               Conread position:1-237
               
               
               Cow position:chr16:11662219-11661987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):123, 19

               
               
               Conread position:1-237
               
               
               Cow position:chr16:46627656-46627885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):13, 94

               
               
               Conread position:1-239
               
               
               Cow position:chr16:15809165-15808925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):104, 80

               
               
               Conread position:1-239
               
               
               Cow position:chr16:18557076-18557313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 211

               
               
               Conread position:1-239
               
               
               Cow position:chr16:23066842-23066611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):138, 119

               
               
               Conread position:1-239
               
               
               Cow position:chr16:48493368-48493129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):123, 214

               
               
               Conread position:1-239
               
               
               Cow position:chr16:52577645-52577406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-239
               
               
               Cow position:chr16:56445235-56445463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):126, 50

               
               
               Conread position:2-99
               
               
               Cow position:chr16:16107013-16106916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-147
               
               
               Cow position:chr16:4708715-4708861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:2-148
               
               
               Cow position:chr16:49122080-49122226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):122, 69

               
               
               Conread position:2-180
               
               
               Cow position:chr16:10611447-10611615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):120, 41

               
               
               Conread position:2-186
               
               
               Cow position:chr16:50114374-50114187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:2-215
               
               
               Cow position:chr16:16055875-16056087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 60

               
               
               Conread position:2-238
               
               
               Cow position:chr16:38621141-38620909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):33, 42

               
               
               Conread position:2-239
               
               
               Cow position:chr16:1440612-1440388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:2-239
               
               
               Cow position:chr16:16524184-16524408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):215, 90

               
               
               Conread position:2-239
               
               
               Cow position:chr16:16946346-16946588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):35, 128

               
               
               Conread position:2-239
               
               
               Cow position:chr16:31419637-31419396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):21, 217

               
               
               Conread position:2-239
               
               
               Cow position:chr16:54515906-54515675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):13, 154

               
               
               Conread position:3-125
               
               
               Cow position:chr16:27005488-27005369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:3-154
               
               
               Cow position:chr16:10406394-10406548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:3-158
               
               
               Cow position:chr16:11777012-11777175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:3-174
               
               
               Cow position:chr16:34384884-34384718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:3-186
               
               
               Cow position:chr16:30930064-30929882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):117, 140

               
               
               Conread position:3-194
               
               
               Cow position:chr16:5019896-5020075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):121, 32

               
               
               Conread position:3-201
               
               
               Cow position:chr16:18692963-18693164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr16:33121789-33121578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):102, 95

               
               
               Conread position:3-224
               
               
               Cow position:chr16:45047451-45047666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:3-239
               
               
               Cow position:chr16:18427365-18427137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):121, 40

               
               
               Conread position:3-239
               
               
               Cow position:chr16:26134188-26134419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):114, 37

               
               
               Conread position:4-160
               
               
               Cow position:chr16:20664472-20664317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:4-186
               
               
               Cow position:chr16:31490499-31490321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 77

               
               
               Conread position:4-208
               
               
               Cow position:chr16:49321139-49320944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:4-239
               
               
               Cow position:chr16:11085197-11085432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):21, 53

               
               
               Conread position:5-167
               
               
               Cow position:chr16:47116248-47116090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):120, 33

               
               
               Conread position:5-225
               
               
               Cow position:chr16:19977138-19976933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):119, 37

               
               
               Conread position:5-239
               
               
               Cow position:chr16:689887-689652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):7, 48

               
               
               Conread position:5-239
               
               
               Cow position:chr16:30639509-30639286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):7, 134

               
               
               Conread position:5-239
               
               
               Cow position:chr16:53267906-53267674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):75, 55

               
               
               Conread position:6-154
               
               
               Cow position:chr16:51652849-51652699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:6-187
               
               
               Cow position:chr16:9510692-9510870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):116, 149

               
               
               Conread position:6-218
               
               
               Cow position:chr16:20260654-20260448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):147, 38

               
               
               Conread position:6-233
               
               
               Cow position:chr16:16546250-16546029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):119, 32

               
               
               Conread position:6-239
               
               
               Cow position:chr16:19002909-19003139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 149

               
               
               Conread position:6-239
               
               
               Cow position:chr16:28454119-28454340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):119, 8

               
               
               Conread position:8-239
               
               
               Cow position:chr16:27014081-27013844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):116, 52

               
               
               Conread position:9-134
               
               
               Cow position:chr16:10331799-10331673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:9-140
               
               
               Cow position:chr16:23990332-23990461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):116, 86

               
               
               Conread position:9-185
               
               
               Cow position:chr16:3566341-3566171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:9-239
               
               
               Cow position:chr16:36930139-36930368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 72

               
               
               Conread position:11-204
               
               
               Cow position:chr16:8704433-8704253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):111, 87

               
               
               Conread position:11-221
               
               
               Cow position:chr16:8315016-8315229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):113, 87

               
               
               Conread position:11-228
               
               
               Cow position:chr16:13660057-13660273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):113, 133

               
               
               Conread position:11-237
               
               
               Cow position:chr16:45693320-45693099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):77, 32

               
               
               Conread position:14-158
               
               
               Cow position:chr16:47963466-47963320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:14-235
               
               
               Cow position:chr16:49511758-49511530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):114, 46

               
               
               Conread position:14-237
               
               
               Cow position:chr16:44580902-44581122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):108, 22

               
               
               Conread position:14-239
               
               
               Cow position:chr16:26155968-26156186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):58, 68

               
               
               Conread position:15-179
               
               
               Cow position:chr16:56283118-56282955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:15-230
               
               
               Cow position:chr16:15938358-15938571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:15-239
               
               
               Cow position:chr16:43082068-43082284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):110, 28

               
               
               Conread position:16-229
               
               
               Cow position:chr16:27723402-27723183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):56, 205

               
               
               Conread position:19-166
               
               
               Cow position:chr16:10617684-10617833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:19-186
               
               
               Cow position:chr16:5580484-5580315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:19-228
               
               
               Cow position:chr16:42312553-42312347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:19-233
               
               
               Cow position:chr16:28827008-28827222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):110, 189

               
               
               Conread position:19-239
               
               
               Cow position:chr16:32837380-32837595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):105, 8

               
               
               Conread position:20-213
               
               
               Cow position:chr16:41711841-41711650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 20

               
               
               Conread position:20-216
               
               
               Cow position:chr16:15806120-15805925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):69, 88

               
               
               Conread position:20-239
               
               
               Cow position:chr16:21462194-21461980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):16, 77

               
               
               Conread position:23-239
               
               
               Cow position:chr16:12072800-12072591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:28-189
               
               
               Cow position:chr16:44693024-44693185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):97, 116

               
               
               Conread position:28-209
               
               
               Cow position:chr16:39156274-39156461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):96, 167

               
               
               Conread position:35-194
               
               
               Cow position:chr16:23978280-23978440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:35-208
               
               
               Cow position:chr16:55586457-55586625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):89, 103

               
               
               Conread position:36-209
               
               
               Cow position:chr16:5511959-5511786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):92, 161

               
               
               Conread position:40-217
               
               
               Cow position:chr16:23163427-23163603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):85, 170

               
               
               Conread position:40-239
               
               
               Cow position:chr16:37719307-37719107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):87, 47

               
               
               Conread position:43-233
               
               
               Cow position:chr16:10303605-10303791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):86, 114

               
               
               Conread position:45-239
               
               
               Cow position:chr16:37278065-37277875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):80, 21

               
               
               Conread position:55-239
               
               
               Cow position:chr16:52222198-52222377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 19

               
               
               Conread position:58-216
               
               
               Cow position:chr16:28266900-28267051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:64-239
               
               
               Cow position:chr16:42257570-42257400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:64-239
               
               
               Cow position:chr16:56104789-56104963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):63, 31

               
               
               Conread position:83-239
               
               
               Cow position:chr16:4979908-4979750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:1-149
               
               
               Cow position:chr17:42775041-42775190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-166
               
               
               Cow position:chr17:8094068-8093908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):121, 37

               
               
               Conread position:1-179
               
               
               Cow position:chr17:8615621-8615789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1-183
               
               
               Cow position:chr17:12768582-12768762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:1-205
               
               
               Cow position:chr17:36818263-36818062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):19, 14

               
               
               Conread position:1-215
               
               
               Cow position:chr17:20652678-20652898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):39, 13

               
               
               Conread position:1-216
               
               
               Cow position:chr17:10769283-10769502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-216
               
               
               Cow position:chr17:30236421-30236208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):14, 42

               
               
               Conread position:1-218
               
               
               Cow position:chr17:11655605-11655389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):123, 187

               
               
               Conread position:1-221
               
               
               Cow position:chr17:3619860-3620079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):119, 73

               
               
               Conread position:1-222
               
               
               Cow position:chr17:23147645-23147427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):123, 53

               
               
               Conread position:1-229
               
               
               Cow position:chr17:33386648-33386420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):19, 14

               
               
               Conread position:1-233
               
               
               Cow position:chr17:18173604-18173823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):123, 94

               
               
               Conread position:1-239
               
               
               Cow position:chr17:5166851-5167074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):123, 92

               
               
               Conread position:1-239
               
               
               Cow position:chr17:7205646-7205409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):84, 44

               
               
               Conread position:1-239
               
               
               Cow position:chr17:8279488-8279717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):124, 39

               
               
               Conread position:1-239
               
               
               Cow position:chr17:10271721-10271487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 148

               
               
               Conread position:1-239
               
               
               Cow position:chr17:23803682-23803450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):29, 62

               
               
               Conread position:1-239
               
               
               Cow position:chr17:26162199-26162435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):97, 71

               
               
               Conread position:1-239
               
               
               Cow position:chr17:31798222-31798460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):199, 214

               
               
               Conread position:2-124
               
               
               Cow position:chr17:3813436-3813556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:2-165
               
               
               Cow position:chr17:9927584-9927420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:2-175
               
               
               Cow position:chr17:7163667-7163843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):78, 92

               
               
               Conread position:2-179
               
               
               Cow position:chr17:18829703-18829520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:2-188
               
               
               Cow position:chr17:14661320-14661498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:2-208
               
               
               Cow position:chr17:27505322-27505116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):83, 72

               
               
               Conread position:2-221
               
               
               Cow position:chr17:36400323-36400109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):122, 43

               
               
               Conread position:2-238
               
               
               Cow position:chr17:4085980-4085748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):84, 25

               
               
               Conread position:3-175
               
               
               Cow position:chr17:33925792-33925966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr17:27819516-27819302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):116, 37

               
               
               Conread position:3-238
               
               
               Cow position:chr17:35387776-35388011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):102, 32

               
               
               Conread position:3-239
               
               
               Cow position:chr17:18246290-18246069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):204, 70

               
               
               Conread position:3-239
               
               
               Cow position:chr17:32457346-32457577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):122, 40

               
               
               Conread position:4-183
               
               
               Cow position:chr17:8215411-8215236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):121, 27

               
               
               Conread position:4-186
               
               
               Cow position:chr17:6996501-6996322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):120, 10

               
               
               Conread position:4-205
               
               
               Cow position:chr17:36173743-36173950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):75, 36

               
               
               Conread position:4-211
               
               
               Cow position:chr17:10314645-10314437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:4-233
               
               
               Cow position:chr17:20216390-20216164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):121, 9

               
               
               Conread position:4-238
               
               
               Cow position:chr17:37414679-37414903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):116, 39

               
               
               Conread position:5-206
               
               
               Cow position:chr17:12342260-12342460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):119, 65

               
               
               Conread position:5-218
               
               
               Cow position:chr17:728138-728344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):152, 31

               
               
               Conread position:5-233
               
               
               Cow position:chr17:13229600-13229373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):34, 102

               
               
               Conread position:5-239
               
               
               Cow position:chr17:143957-144187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):119, 135

               
               
               Conread position:5-239
               
               
               Cow position:chr17:1455719-1455948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):7, 35

               
               
               Conread position:5-239
               
               
               Cow position:chr17:7614154-7614391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:5-239
               
               
               Cow position:chr17:31465018-31465260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):93, 74

               
               
               Conread position:5-239
               
               
               Cow position:chr17:38139731-38139497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):120, 52

               
               
               Conread position:6-227
               
               
               Cow position:chr17:33903702-33903918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):55, 37

               
               
               Conread position:7-228
               
               
               Cow position:chr17:37778414-37778618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:9-239
               
               
               Cow position:chr17:37138972-37138751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):116, 30

               
               
               Conread position:10-216
               
               
               Cow position:chr17:34870301-34870091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:10-239
               
               
               Cow position:chr17:24880958-24880732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):117, 161

               
               
               Conread position:11-205
               
               
               Cow position:chr17:14278280-14278086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):93, 84

               
               
               Conread position:11-239
               
               
               Cow position:chr17:9748959-9748736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:12-225
               
               
               Cow position:chr17:10221065-10220854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):68, 87

               
               
               Conread position:13-209
               
               
               Cow position:chr17:1328812-1328614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):112, 36

               
               
               Conread position:14-227
               
               
               Cow position:chr17:39016311-39016098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):114, 26

               
               
               Conread position:15-116
               
               
               Cow position:chr17:43640735-43640839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:18-181
               
               
               Cow position:chr17:3706428-3706590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 46

               
               
               Conread position:18-197
               
               
               Cow position:chr17:13600767-13600953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):5, 51

               
               
               Conread position:18-239
               
               
               Cow position:chr17:35212566-35212358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):106, 77

               
               
               Conread position:19-208
               
               
               Cow position:chr17:40815554-40815743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):86, 111

               
               
               Conread position:19-209
               
               
               Cow position:chr17:5381160-5380977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):102, 89

               
               
               Conread position:19-239
               
               
               Cow position:chr17:36216977-36217190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:20-221
               
               
               Cow position:chr17:18887573-18887759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:20-239
               
               
               Cow position:chr17:5360245-5360448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):104, 75

               
               
               Conread position:22-175
               
               
               Cow position:chr17:5041200-5041354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):102, 122

               
               
               Conread position:23-239
               
               
               Cow position:chr17:13715830-13716047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):107, 37

               
               
               Conread position:23-239
               
               
               Cow position:chr17:27257013-27257240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:27-224
               
               
               Cow position:chr17:33913373-33913573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:28-218
               
               
               Cow position:chr17:7595351-7595164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:30-239
               
               
               Cow position:chr17:21373872-21373669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):94, 65

               
               
               Conread position:33-233
               
               
               Cow position:chr17:19891819-19891618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):89, 46

               
               
               Conread position:50-239
               
               
               Cow position:chr17:8926039-8926224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):22, 35

               
               
               Conread position:62-239
               
               
               Cow position:chr17:18568771-18568942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:62-239
               
               
               Cow position:chr17:41891895-41892074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):62, 36

               
               
               Conread position:66-238
               
               
               Cow position:chr17:8293617-8293791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):21, 147

               
               
               Conread position:1-189
               
               
               Cow position:chr18:48717792-48717973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):124, 36

               
               
               Conread position:1-198
               
               
               Cow position:chr18:44493332-44493527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:156
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 168

               
               
               Conread position:1-201
               
               
               Cow position:chr18:26842945-26843146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):123, 19

               
               
               Conread position:1-205
               
               
               Cow position:chr18:26373074-26372869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:161
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-226
               
               
               Cow position:chr18:40202657-40202877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):135, 94

               
               
               Conread position:1-227
               
               
               Cow position:chr18:6158062-6157843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):120, 40

               
               
               Conread position:1-227
               
               
               Cow position:chr18:38126296-38126521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 94

               
               
               Conread position:1-233
               
               
               Cow position:chr18:16841898-16842139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1-238
               
               
               Cow position:chr18:16448692-16448474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:1-239
               
               
               Cow position:chr18:1190568-1190803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):126, 137

               
               
               Conread position:1-239
               
               
               Cow position:chr18:9155043-9154802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 143

               
               
               Conread position:1-239
               
               
               Cow position:chr18:20126954-20127190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-239
               
               
               Cow position:chr18:22411459-22411697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):127, 14

               
               
               Conread position:1-239
               
               
               Cow position:chr18:34021540-34021303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 109

               
               
               Conread position:1-239
               
               
               Cow position:chr18:37331374-37331609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 155

               
               
               Conread position:1-239
               
               
               Cow position:chr18:40893427-40893193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):125, 168

               
               
               Conread position:2-120
               
               
               Cow position:chr18:15267837-15267955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-139
               
               
               Cow position:chr18:23652261-23652400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:2-205
               
               
               Cow position:chr18:10687444-10687648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):107, 36

               
               
               Conread position:2-216
               
               
               Cow position:chr18:33842931-33843149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:2-227
               
               
               Cow position:chr18:10101638-10101418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):122, 28

               
               
               Conread position:2-232
               
               
               Cow position:chr18:50700837-50700610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):122, 93

               
               
               Conread position:2-234
               
               
               Cow position:chr18:23714718-23714964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:2-239
               
               
               Cow position:chr18:15831450-15831675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):123, 39

               
               
               Conread position:2-239
               
               
               Cow position:chr18:51271592-51271837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):103, 239

               
               
               Conread position:3-148
               
               
               Cow position:chr18:28794987-28794843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):121, 20

               
               
               Conread position:3-165
               
               
               Cow position:chr18:4378915-4378756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):121, 13

               
               
               Conread position:3-166
               
               
               Cow position:chr18:29949896-29949737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):125, 56

               
               
               Conread position:3-211
               
               
               Cow position:chr18:51537535-51537737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):9, 58

               
               
               Conread position:3-233
               
               
               Cow position:chr18:43712198-43711969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):125, 81

               
               
               Conread position:3-239
               
               
               Cow position:chr18:19364084-19363853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):119, 65

               
               
               Conread position:4-131
               
               
               Cow position:chr18:4890903-4890778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:4-175
               
               
               Cow position:chr18:39503550-39503720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):120, 91

               
               
               Conread position:4-183
               
               
               Cow position:chr18:48036968-48036789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):120, 67

               
               
               Conread position:4-226
               
               
               Cow position:chr18:45961122-45961343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):124, 56

               
               
               Conread position:4-234
               
               
               Cow position:chr18:26334655-26334890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):120, 84

               
               
               Conread position:4-238
               
               
               Cow position:chr18:55696877-55697104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):121, 36

               
               
               Conread position:4-239
               
               
               Cow position:chr18:9806570-9806335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):102, 63

               
               
               Conread position:4-239
               
               
               Cow position:chr18:34324799-34325035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):53, 156

               
               
               Conread position:4-239
               
               
               Cow position:chr18:46873718-46873945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:5-237
               
               
               Cow position:chr18:51587398-51587624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):120, 71

               
               
               Conread position:5-239
               
               
               Cow position:chr18:35797760-35797542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):120, 38

               
               
               Conread position:6-198
               
               
               Cow position:chr18:35767317-35767129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):119, 75

               
               
               Conread position:6-238
               
               
               Cow position:chr18:2438618-2438847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):122, 34

               
               
               Conread position:7-180
               
               
               Cow position:chr18:28297717-28297889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):110, 64

               
               
               Conread position:7-239
               
               
               Cow position:chr18:51298627-51298397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):122, 99

               
               
               Conread position:10-237
               
               
               Cow position:chr18:5756123-5755899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):114, 141

               
               
               Conread position:10-237
               
               
               Cow position:chr18:11362394-11362171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):115, 143

               
               
               Conread position:11-208
               
               
               Cow position:chr18:4578344-4578540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):34, 46

               
               
               Conread position:13-225
               
               
               Cow position:chr18:43113807-43114013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):112, 70

               
               
               Conread position:18-239
               
               
               Cow position:chr18:15689424-15689202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):9, 170

               
               
               Conread position:20-228
               
               
               Cow position:chr18:248680-248886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):100, 164

               
               
               Conread position:22-202
               
               
               Cow position:chr18:30566426-30566603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:23-239
               
               
               Cow position:chr18:16726780-16726566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):101, 147

               
               
               Conread position:24-232
               
               
               Cow position:chr18:44400577-44400372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):100, 131

               
               
               Conread position:24-239
               
               
               Cow position:chr18:42061206-42060991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):90, 74

               
               
               Conread position:26-239
               
               
               Cow position:chr18:21706055-21706262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):98, 150

               
               
               Conread position:27-239
               
               
               Cow position:chr18:24855716-24855928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):93, 188

               
               
               Conread position:32-230
               
               
               Cow position:chr18:1495426-1495228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):90, 189

               
               
               Conread position:33-206
               
               
               Cow position:chr18:48458796-48458622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 156

               
               
               Conread position:33-208
               
               
               Cow position:chr18:32909169-32908995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):91, 62

               
               
               Conread position:34-239
               
               
               Cow position:chr18:25970521-25970717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):91, 45

               
               
               Conread position:36-234
               
               
               Cow position:chr18:16298224-16298022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:37-165
               
               
               Cow position:chr18:44408536-44408406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:44-227
               
               
               Cow position:chr18:21681868-21682046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):84, 19

               
               
               Conread position:45-239
               
               
               Cow position:chr18:32773988-32773794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):79, 67

               
               
               Conread position:48-205
               
               
               Cow position:chr18:25002783-25002940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):74, 47

               
               
               Conread position:55-239
               
               
               Cow position:chr18:16134214-16134397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):69, 19

               
               
               Conread position:81-239
               
               
               Cow position:chr18:213463-213622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):32, 17

               
               
               Conread position:107-224
               
               
               Cow position:chr18:51002491-51002606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 45

               
               
               Conread position:111-239
               
               
               Cow position:chr18:34006995-34006867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 59

               
               
               Conread position:1-144
               
               
               Cow position:chr19:30652916-30653061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-162
               
               
               Cow position:chr19:54817358-54817521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):104, 108

               
               
               Conread position:1-167
               
               
               Cow position:chr19:11759053-11759221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:1-179
               
               
               Cow position:chr19:39222935-39223106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):123, 72

               
               
               Conread position:1-195
               
               
               Cow position:chr19:22932373-22932568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-198
               
               
               Cow position:chr19:2280471-2280662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):121, 42

               
               
               Conread position:1-204
               
               
               Cow position:chr19:28842184-28842388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-209
               
               
               Cow position:chr19:14254557-14254761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):124, 73

               
               
               Conread position:1-211
               
               
               Cow position:chr19:36380398-36380190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):120, 73

               
               
               Conread position:1-217
               
               
               Cow position:chr19:9092636-9092850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):123, 101

               
               
               Conread position:1-218
               
               
               Cow position:chr19:10970914-10971140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1-228
               
               
               Cow position:chr19:12040794-12040572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 170

               
               
               Conread position:1-233
               
               
               Cow position:chr19:15937006-15936782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1-238
               
               
               Cow position:chr19:9387810-9387576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):127, 138

               
               
               Conread position:1-238
               
               
               Cow position:chr19:19246945-19246712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):155, 31

               
               
               Conread position:1-238
               
               
               Cow position:chr19:31614284-31614050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):70, 94

               
               
               Conread position:1-239
               
               
               Cow position:chr19:905142-904917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):19, 93

               
               
               Conread position:1-239
               
               
               Cow position:chr19:33686259-33686027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:1-239
               
               
               Cow position:chr19:43727308-43727077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):126, 69

               
               
               Conread position:2-175
               
               
               Cow position:chr19:1153381-1153206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:2-218
               
               
               Cow position:chr19:5648497-5648707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):121, 38

               
               
               Conread position:2-218
               
               
               Cow position:chr19:11636771-11636980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):120, 57

               
               
               Conread position:2-225
               
               
               Cow position:chr19:952863-952646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):123, 82

               
               
               Conread position:2-225
               
               
               Cow position:chr19:35540476-35540243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:2-237
               
               
               Cow position:chr19:39250431-39250206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):122, 34

               
               
               Conread position:2-239
               
               
               Cow position:chr19:11876527-11876764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):13, 37

               
               
               Conread position:2-239
               
               
               Cow position:chr19:24721850-24721616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):122, 79

               
               
               Conread position:2-239
               
               
               Cow position:chr19:31984475-31984712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):122, 28

               
               
               Conread position:2-239
               
               
               Cow position:chr19:40026759-40026993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):109, 68

               
               
               Conread position:3-186
               
               
               Cow position:chr19:46498102-46497927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):122, 36

               
               
               Conread position:3-187
               
               
               Cow position:chr19:47783590-47783777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):117, 11

               
               
               Conread position:3-201
               
               
               Cow position:chr19:26003440-26003641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr19:30935596-30935817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:179
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):31, 76

               
               
               Conread position:3-229
               
               
               Cow position:chr19:41645542-41645308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:3-238
               
               
               Cow position:chr19:48479147-48478919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):121, 11

               
               
               Conread position:3-239
               
               
               Cow position:chr19:27346490-27346711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-165
               
               
               Cow position:chr19:56008558-56008713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):120, 35

               
               
               Conread position:4-221
               
               
               Cow position:chr19:32214970-32214757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):22, 69

               
               
               Conread position:4-228
               
               
               Cow position:chr19:31126970-31126745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:4-239
               
               
               Cow position:chr19:19662208-19661985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:5-199
               
               
               Cow position:chr19:31380835-31381025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):116, 127

               
               
               Conread position:5-205
               
               
               Cow position:chr19:21284909-21285107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):100, 151

               
               
               Conread position:5-239
               
               
               Cow position:chr19:36976740-36976974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):123, 182

               
               
               Conread position:8-208
               
               
               Cow position:chr19:4824813-4825014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):112, 175

               
               
               Conread position:8-239
               
               
               Cow position:chr19:1712972-1713204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):116, 87

               
               
               Conread position:9-228
               
               
               Cow position:chr19:20291925-20292143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):119, 65

               
               
               Conread position:10-239
               
               
               Cow position:chr19:25271252-25271476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):114, 145

               
               
               Conread position:11-162
               
               
               Cow position:chr19:50786375-50786523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):113, 87

               
               
               Conread position:11-172
               
               
               Cow position:chr19:46306180-46306334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):113, 27

               
               
               Conread position:11-239
               
               
               Cow position:chr19:38907196-38907418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:14-239
               
               
               Cow position:chr19:2770855-2771073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):110, 12

               
               
               Conread position:14-239
               
               
               Cow position:chr19:38871231-38871005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 198

               
               
               Conread position:15-239
               
               
               Cow position:chr19:35345090-35344864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):109, 201

               
               
               Conread position:18-179
               
               
               Cow position:chr19:38025851-38025689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:19-239
               
               
               Cow position:chr19:7030075-7029856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):105, 43

               
               
               Conread position:19-239
               
               
               Cow position:chr19:36461371-36461592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):68, 8

               
               
               Conread position:19-239
               
               
               Cow position:chr19:55236643-55236428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):108, 134

               
               
               Conread position:21-179
               
               
               Cow position:chr19:5986391-5986231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:23-173
               
               
               Cow position:chr19:42896618-42896462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:30-237
               
               
               Cow position:chr19:7838902-7839102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 19

               
               
               Conread position:34-217
               
               
               Cow position:chr19:24689425-24689244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 80

               
               
               Conread position:40-228
               
               
               Cow position:chr19:6735089-6735279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):85, 188

               
               
               Conread position:41-234
               
               
               Cow position:chr19:3080603-3080404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):22, 181

               
               
               Conread position:45-239
               
               
               Cow position:chr19:3084078-3084269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):83, 56

               
               
               Conread position:46-221
               
               
               Cow position:chr19:35064060-35064239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:49-218
               
               
               Cow position:chr19:36318433-36318267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):75, 108

               
               
               Conread position:55-239
               
               
               Cow position:chr19:2821704-2821521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):70, 53

               
               
               Conread position:57-186
               
               
               Cow position:chr19:47771749-47771621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):21, 43

               
               
               Conread position:64-233
               
               
               Cow position:chr19:9100260-9100089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:72-226
               
               
               Cow position:chr19:10207714-10207561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):7, 13

               
               
               Conread position:73-221
               
               
               Cow position:chr19:16110085-16110232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 12

               
               
               Conread position:1-178
               
               
               Cow position:chr2:64226664-64226487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):73, 106

               
               
               Conread position:1-181
               
               
               Cow position:chr2:51041426-51041609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr2:8245707-8245516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr2:83854912-83854730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):116, 84

               
               
               Conread position:1-187
               
               
               Cow position:chr2:36998322-36998135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):121, 73

               
               
               Conread position:1-189
               
               
               Cow position:chr2:33596464-33596659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:1-198
               
               
               Cow position:chr2:56884608-56884410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):17, 74

               
               
               Conread position:1-209
               
               
               Cow position:chr2:51638739-51638528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):104, 156

               
               
               Conread position:1-209
               
               
               Cow position:chr2:82311005-82311219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):35, 67

               
               
               Conread position:1-215
               
               
               Cow position:chr2:39346767-39346564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:1-217
               
               
               Cow position:chr2:5129469-5129673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):60, 42

               
               
               Conread position:1-218
               
               
               Cow position:chr2:15769316-15769533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:1-218
               
               
               Cow position:chr2:41057339-41057554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:1-220
               
               
               Cow position:chr2:17427358-17427137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-221
               
               
               Cow position:chr2:31114020-31113810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):128, 54

               
               
               Conread position:1-223
               
               
               Cow position:chr2:49480405-49480626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):33, 13

               
               
               Conread position:1-228
               
               
               Cow position:chr2:38205575-38205801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):123, 13

               
               
               Conread position:1-229
               
               
               Cow position:chr2:51028141-51027919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):168, 127

               
               
               Conread position:1-229
               
               
               Cow position:chr2:54253566-54253338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:1-232
               
               
               Cow position:chr2:39787207-39786979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):123, 94

               
               
               Conread position:1-237
               
               
               Cow position:chr2:33659514-33659751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):121, 214

               
               
               Conread position:1-237
               
               
               Cow position:chr2:39832569-39832344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):124, 26

               
               
               Conread position:1-238
               
               
               Cow position:chr2:36295015-36294777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):30, 92

               
               
               Conread position:1-238
               
               
               Cow position:chr2:51799132-51799372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):71, 121

               
               
               Conread position:1-238
               
               
               Cow position:chr2:72758812-72758581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):123, 13

               
               
               Conread position:1-239
               
               
               Cow position:chr2:304197-304434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:1-239
               
               
               Cow position:chr2:793839-793596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):44, 219

               
               
               Conread position:1-239
               
               
               Cow position:chr2:4071107-4070870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):105, 14

               
               
               Conread position:1-239
               
               
               Cow position:chr2:7720726-7720959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):123, 154

               
               
               Conread position:1-239
               
               
               Cow position:chr2:15162925-15162693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):124, 31

               
               
               Conread position:1-239
               
               
               Cow position:chr2:29382490-29382729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):13, 193

               
               
               Conread position:1-239
               
               
               Cow position:chr2:56269430-56269665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):37, 50

               
               
               Conread position:1-239
               
               
               Cow position:chr2:64196805-64197042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):11, 156

               
               
               Conread position:2-123
               
               
               Cow position:chr2:53969809-53969930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-147
               
               
               Cow position:chr2:46228064-46228210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):118, 38

               
               
               Conread position:2-178
               
               
               Cow position:chr2:45435282-45435111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):122, 18

               
               
               Conread position:2-205
               
               
               Cow position:chr2:46783702-46783498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:159
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):122, 146

               
               
               Conread position:2-205
               
               
               Cow position:chr2:62384496-62384701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:2-208
               
               
               Cow position:chr2:38117819-38118019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):125, 59

               
               
               Conread position:2-208
               
               
               Cow position:chr2:46741670-46741463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):126, 93

               
               
               Conread position:2-218
               
               
               Cow position:chr2:61880615-61880835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):125, 83

               
               
               Conread position:2-220
               
               
               Cow position:chr2:4010283-4010077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):122, 13

               
               
               Conread position:2-238
               
               
               Cow position:chr2:59959852-59960084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):209, 106

               
               
               Conread position:2-239
               
               
               Cow position:chr2:31155893-31155661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):71, 16

               
               
               Conread position:2-239
               
               
               Cow position:chr2:35908949-35908717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:2-239
               
               
               Cow position:chr2:36866600-36866829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):192, 70

               
               
               Conread position:2-239
               
               
               Cow position:chr2:40427611-40427843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):125, 141

               
               
               Conread position:2-239
               
               
               Cow position:chr2:41314074-41313844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:2-239
               
               
               Cow position:chr2:70664204-70663965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:3-135
               
               
               Cow position:chr2:68010017-68010149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):118, 28

               
               
               Conread position:3-180
               
               
               Cow position:chr2:81348692-81348870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):72, 57

               
               
               Conread position:3-181
               
               
               Cow position:chr2:42925476-42925297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:3-208
               
               
               Cow position:chr2:72584106-72583904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):122, 152

               
               
               Conread position:3-239
               
               
               Cow position:chr2:425998-425767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):122, 20

               
               
               Conread position:3-239
               
               
               Cow position:chr2:7498760-7498527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):121, 152

               
               
               Conread position:3-239
               
               
               Cow position:chr2:13466211-13465985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):122, 35

               
               
               Conread position:3-239
               
               
               Cow position:chr2:18395343-18395117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:3-239
               
               
               Cow position:chr2:42309366-42309603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):13, 158

               
               
               Conread position:4-150
               
               
               Cow position:chr2:58359685-58359541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:4-166
               
               
               Cow position:chr2:38913854-38913692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):94, 10

               
               
               Conread position:4-216
               
               
               Cow position:chr2:83744872-83745072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):124, 41

               
               
               Conread position:4-218
               
               
               Cow position:chr2:1651579-1651372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):207, 12

               
               
               Conread position:4-234
               
               
               Cow position:chr2:67485428-67485202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):120, 39

               
               
               Conread position:4-236
               
               
               Cow position:chr2:34256125-34256344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:4-236
               
               
               Cow position:chr2:73999907-73999676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):7, 69

               
               
               Conread position:5-171
               
               
               Cow position:chr2:40273102-40272937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:5-208
               
               
               Cow position:chr2:48189537-48189737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):20, 107

               
               
               Conread position:5-218
               
               
               Cow position:chr2:52171433-52171224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):49, 83

               
               
               Conread position:5-229
               
               
               Cow position:chr2:47990621-47990396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):119, 211

               
               
               Conread position:5-239
               
               
               Cow position:chr2:32453349-32453582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):119, 15

               
               
               Conread position:6-205
               
               
               Cow position:chr2:50591964-50591760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:6-223
               
               
               Cow position:chr2:64213243-64213028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):118, 73

               
               
               Conread position:6-238
               
               
               Cow position:chr2:72902106-72902337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):119, 29

               
               
               Conread position:6-239
               
               
               Cow position:chr2:20250889-20250659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:6-239
               
               
               Cow position:chr2:20868103-20868324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):123, 8

               
               
               Conread position:6-239
               
               
               Cow position:chr2:53496736-53496960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):122, 56

               
               
               Conread position:9-196
               
               
               Cow position:chr2:68981830-68982019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:9-229
               
               
               Cow position:chr2:25084865-25084644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):116, 34

               
               
               Conread position:9-233
               
               
               Cow position:chr2:26042060-26042284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):71, 90

               
               
               Conread position:9-237
               
               
               Cow position:chr2:6444210-6443981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 150

               
               
               Conread position:9-239
               
               
               Cow position:chr2:14555575-14555799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):96, 52

               
               
               Conread position:9-239
               
               
               Cow position:chr2:62309258-62309476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):116, 29

               
               
               Conread position:10-208
               
               
               Cow position:chr2:8601508-8601700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):114, 52

               
               
               Conread position:11-184
               
               
               Cow position:chr2:78852597-78852766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):117, 51

               
               
               Conread position:11-208
               
               
               Cow position:chr2:21955313-21955117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):12, 144

               
               
               Conread position:11-228
               
               
               Cow position:chr2:13604647-13604430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):113, 198

               
               
               Conread position:11-239
               
               
               Cow position:chr2:39855960-39855740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):61, 51

               
               
               Conread position:12-218
               
               
               Cow position:chr2:70464607-70464406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):24, 15

               
               
               Conread position:14-215
               
               
               Cow position:chr2:73027616-73027415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):114, 169

               
               
               Conread position:16-239
               
               
               Cow position:chr2:58685554-58685334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):108, 127

               
               
               Conread position:18-161
               
               
               Cow position:chr2:67758984-67759124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:19-170
               
               
               Cow position:chr2:42817582-42817426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:19-237
               
               
               Cow position:chr2:14099818-14099604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):100, 136

               
               
               Conread position:19-237
               
               
               Cow position:chr2:77033851-77033633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):87, 21

               
               
               Conread position:19-238
               
               
               Cow position:chr2:24106560-24106345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):106, 31

               
               
               Conread position:19-239
               
               
               Cow position:chr2:51769777-51769556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):105, 22

               
               
               Conread position:20-201
               
               
               Cow position:chr2:4383729-4383911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):102, 54

               
               
               Conread position:20-237
               
               
               Cow position:chr2:2937726-2937521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):104, 42

               
               
               Conread position:20-239
               
               
               Cow position:chr2:50793915-50793696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):30, 16

               
               
               Conread position:21-239
               
               
               Cow position:chr2:41461534-41461317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):103, 17

               
               
               Conread position:23-173
               
               
               Cow position:chr2:45146561-45146408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:23-233
               
               
               Cow position:chr2:22859467-22859686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:23-234
               
               
               Cow position:chr2:10356513-10356719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):105, 32

               
               
               Conread position:23-239
               
               
               Cow position:chr2:18061465-18061680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):105, 39

               
               
               Conread position:25-172
               
               
               Cow position:chr2:62464022-62464166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):97, 45

               
               
               Conread position:25-239
               
               
               Cow position:chr2:36553135-36552927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):197, 72

               
               
               Conread position:29-176
               
               
               Cow position:chr2:29032867-29032718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:29-239
               
               
               Cow position:chr2:82054685-82054895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:34-223
               
               
               Cow position:chr2:48748571-48748762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:36-229
               
               
               Cow position:chr2:77981994-77982184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 122

               
               
               Conread position:37-239
               
               
               Cow position:chr2:41765639-41765440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):8, 69

               
               
               Conread position:44-239
               
               
               Cow position:chr2:14749736-14749542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:49-239
               
               
               Cow position:chr2:53000647-53000463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):73, 58

               
               
               Conread position:53-208
               
               
               Cow position:chr2:70306278-70306122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:55-239
               
               
               Cow position:chr2:6935152-6935329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):70, 39

               
               
               Conread position:59-234
               
               
               Cow position:chr2:70579574-70579750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:61-208
               
               
               Cow position:chr2:38377028-38376885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):61, 8

               
               
               Conread position:64-219
               
               
               Cow position:chr2:45726306-45726153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):42, 94

               
               
               Conread position:65-234
               
               
               Cow position:chr2:68842817-68842986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):85, 75

               
               
               Conread position:86-227
               
               
               Cow position:chr2:39802208-39802349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):39, 138

               
               
               Conread position:87-239
               
               
               Cow position:chr2:7947041-7947193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):121, 129

               
               
               Conread position:110-239
               
               
               Cow position:chr2:73386767-73386897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:1-155
               
               
               Cow position:chr20:37136316-37136160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1-158
               
               
               Cow position:chr20:3105244-3105087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:1-183
               
               
               Cow position:chr20:21518873-21518696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1-199
               
               
               Cow position:chr20:21236876-21236687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):124, 17

               
               
               Conread position:1-208
               
               
               Cow position:chr20:19266376-19266179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):124, 85

               
               
               Conread position:1-210
               
               
               Cow position:chr20:4157645-4157441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):67, 39

               
               
               Conread position:1-218
               
               
               Cow position:chr20:41109868-41110084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:1-221
               
               
               Cow position:chr20:25823506-25823287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:1-223
               
               
               Cow position:chr20:20359555-20359776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):120, 14

               
               
               Conread position:1-238
               
               
               Cow position:chr20:15073602-15073841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:1-239
               
               
               Cow position:chr20:1205708-1205939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:1-239
               
               
               Cow position:chr20:14540571-14540335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):75, 18

               
               
               Conread position:2-190
               
               
               Cow position:chr20:32972774-32972590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 60

               
               
               Conread position:2-201
               
               
               Cow position:chr20:17363430-17363627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:2-215
               
               
               Cow position:chr20:7386780-7386574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):9, 91

               
               
               Conread position:2-226
               
               
               Cow position:chr20:23163678-23163898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:2-238
               
               
               Cow position:chr20:33178301-33178526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):122, 20

               
               
               Conread position:2-239
               
               
               Cow position:chr20:14679845-14679614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):96, 79

               
               
               Conread position:2-239
               
               
               Cow position:chr20:23235258-23235029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):122, 12

               
               
               Conread position:2-239
               
               
               Cow position:chr20:37029050-37028810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):39, 56

               
               
               Conread position:3-131
               
               
               Cow position:chr20:8556619-8556748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:3-158
               
               
               Cow position:chr20:39669170-39669016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):121, 46

               
               
               Conread position:3-199
               
               
               Cow position:chr20:7101012-7100812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:159
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):102, 11

               
               
               Conread position:3-223
               
               
               Cow position:chr20:311549-311333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):69, 113

               
               
               Conread position:3-234
               
               
               Cow position:chr20:10759247-10759477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:3-238
               
               
               Cow position:chr20:30855532-30855759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):60, 79

               
               
               Conread position:3-239
               
               
               Cow position:chr20:25686121-25686357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):119, 11

               
               
               Conread position:3-239
               
               
               Cow position:chr20:35842902-35843134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):121, 11

               
               
               Conread position:4-208
               
               
               Cow position:chr20:220835-220636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):100, 94

               
               
               Conread position:4-222
               
               
               Cow position:chr20:4933844-4934061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):117, 70

               
               
               Conread position:4-224
               
               
               Cow position:chr20:4334293-4334523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):68, 216

               
               
               Conread position:4-239
               
               
               Cow position:chr20:8262141-8261902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):7, 40

               
               
               Conread position:4-239
               
               
               Cow position:chr20:9706693-9706926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):120, 10

               
               
               Conread position:4-239
               
               
               Cow position:chr20:13465732-13465503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):118, 70

               
               
               Conread position:4-239
               
               
               Cow position:chr20:24643923-24644153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):120, 147

               
               
               Conread position:5-135
               
               
               Cow position:chr20:2801643-2801772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):119, 9

               
               
               Conread position:5-135
               
               
               Cow position:chr20:29741185-29741314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):100, 18

               
               
               Conread position:5-171
               
               
               Cow position:chr20:6104927-6105095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:5-222
               
               
               Cow position:chr20:13608845-13609057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):124, 38

               
               
               Conread position:5-239
               
               
               Cow position:chr20:10837990-10838221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):114, 59

               
               
               Conread position:5-239
               
               
               Cow position:chr20:24234369-24234149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:6-199
               
               
               Cow position:chr20:14471342-14471541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:6-238
               
               
               Cow position:chr20:5763070-5763302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):119, 46

               
               
               Conread position:6-239
               
               
               Cow position:chr20:17670403-17670175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):18, 28

               
               
               Conread position:8-231
               
               
               Cow position:chr20:14513250-14513024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):119, 32

               
               
               Conread position:9-127
               
               
               Cow position:chr20:922206-922087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:92
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:11-208
               
               
               Cow position:chr20:35924568-35924759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):113, 32

               
               
               Conread position:11-224
               
               
               Cow position:chr20:38858216-38858414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):114, 38

               
               
               Conread position:12-239
               
               
               Cow position:chr20:17397046-17397265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):112, 59

               
               
               Conread position:13-232
               
               
               Cow position:chr20:18530652-18530433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):108, 42

               
               
               Conread position:14-172
               
               
               Cow position:chr20:13617446-13617283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:14-216
               
               
               Cow position:chr20:2456242-2456045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):111, 29

               
               
               Conread position:14-220
               
               
               Cow position:chr20:16979965-16979760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):113, 197

               
               
               Conread position:14-239
               
               
               Cow position:chr20:6903529-6903308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):110, 44

               
               
               Conread position:18-239
               
               
               Cow position:chr20:19865460-19865247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):106, 137

               
               
               Conread position:19-204
               
               
               Cow position:chr20:25146989-25146808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):85, 19

               
               
               Conread position:19-236
               
               
               Cow position:chr20:4204497-4204288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):108, 136

               
               
               Conread position:19-237
               
               
               Cow position:chr20:13494718-13494508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):105, 40

               
               
               Conread position:20-147
               
               
               Cow position:chr20:21698964-21698835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:20-226
               
               
               Cow position:chr20:15241553-15241759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):61, 136

               
               
               Conread position:34-230
               
               
               Cow position:chr20:24850003-24849807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):71, 40

               
               
               Conread position:36-237
               
               
               Cow position:chr20:39220522-39220723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):85, 112

               
               
               Conread position:40-237
               
               
               Cow position:chr20:25274102-25274294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):81, 99

               
               
               Conread position:57-234
               
               
               Cow position:chr20:32861827-32862000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:93-239
               
               
               Cow position:chr20:20471921-20471775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):131, 120

               
               
               Conread position:102-234
               
               
               Cow position:chr20:5576904-5576771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:1-154
               
               
               Cow position:chr21:23974026-23974179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):124, 70

               
               
               Conread position:1-158
               
               
               Cow position:chr21:30053170-30053329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):123, 102

               
               
               Conread position:1-184
               
               
               Cow position:chr21:2413299-2413119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):126, 39

               
               
               Conread position:1-186
               
               
               Cow position:chr21:17806889-17807069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):123, 42

               
               
               Conread position:1-218
               
               
               Cow position:chr21:8671641-8671431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 69

               
               
               Conread position:1-223
               
               
               Cow position:chr21:8207025-8206801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):71, 13

               
               
               Conread position:1-224
               
               
               Cow position:chr21:45356084-45355863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):123, 202

               
               
               Conread position:1-226
               
               
               Cow position:chr21:7483105-7483325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):123, 29

               
               
               Conread position:1-228
               
               
               Cow position:chr21:11675803-11676027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):123, 154

               
               
               Conread position:1-228
               
               
               Cow position:chr21:13358579-13358347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):123, 156

               
               
               Conread position:1-229
               
               
               Cow position:chr21:3254402-3254172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):121, 140

               
               
               Conread position:1-236
               
               
               Cow position:chr21:17428746-17428514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):109, 94

               
               
               Conread position:1-237
               
               
               Cow position:chr21:34740095-34739858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):113, 215

               
               
               Conread position:1-238
               
               
               Cow position:chr21:37235632-37235398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):113, 22

               
               
               Conread position:1-238
               
               
               Cow position:chr21:39528758-39528528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):115, 14

               
               
               Conread position:1-239
               
               
               Cow position:chr21:4099116-4098884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):123, 40

               
               
               Conread position:1-239
               
               
               Cow position:chr21:6316460-6316229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):123, 33

               
               
               Conread position:1-239
               
               
               Cow position:chr21:8420867-8420637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:1-239
               
               
               Cow position:chr21:15741833-15742077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):11, 207

               
               
               Conread position:1-239
               
               
               Cow position:chr21:44754539-44754765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:1-239
               
               
               Cow position:chr21:47823013-47823262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 72

               
               
               Conread position:2-176
               
               
               Cow position:chr21:22398397-22398236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:2-185
               
               
               Cow position:chr21:25800644-25800465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):120, 43

               
               
               Conread position:2-201
               
               
               Cow position:chr21:27480692-27480498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):96, 12

               
               
               Conread position:2-229
               
               
               Cow position:chr21:32574970-32574749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):180, 93

               
               
               Conread position:2-239
               
               
               Cow position:chr21:9939943-9940176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):122, 11

               
               
               Conread position:2-239
               
               
               Cow position:chr21:31576737-31576509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):122, 31

               
               
               Conread position:2-239
               
               
               Cow position:chr21:31662248-31662017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):127, 38

               
               
               Conread position:3-149
               
               
               Cow position:chr21:6012665-6012812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:3-164
               
               
               Cow position:chr21:44220613-44220449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:3-166
               
               
               Cow position:chr21:49661593-49661751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):122, 11

               
               
               Conread position:3-219
               
               
               Cow position:chr21:37120963-37121176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 82

               
               
               Conread position:3-223
               
               
               Cow position:chr21:47715297-47715518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):121, 91

               
               
               Conread position:3-225
               
               
               Cow position:chr21:31004426-31004646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 43

               
               
               Conread position:3-236
               
               
               Cow position:chr21:22352989-22353219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):102, 185

               
               
               Conread position:3-238
               
               
               Cow position:chr21:4723729-4723493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:3-239
               
               
               Cow position:chr21:9353696-9353458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:3-239
               
               
               Cow position:chr21:12301263-12301502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):97, 71

               
               
               Conread position:3-239
               
               
               Cow position:chr21:18941586-18941822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):98, 212

               
               
               Conread position:3-239
               
               
               Cow position:chr21:33947007-33947241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):121, 40

               
               
               Conread position:4-177
               
               
               Cow position:chr21:26147325-26147151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):120, 149

               
               
               Conread position:4-200
               
               
               Cow position:chr21:24674962-24674770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):120, 11

               
               
               Conread position:4-228
               
               
               Cow position:chr21:31662713-31662489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):101, 19

               
               
               Conread position:4-232
               
               
               Cow position:chr21:6696770-6697012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):111, 213

               
               
               Conread position:4-233
               
               
               Cow position:chr21:13755028-13754801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):124, 28

               
               
               Conread position:4-237
               
               
               Cow position:chr21:13737294-13737066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):101, 74

               
               
               Conread position:4-239
               
               
               Cow position:chr21:39509142-39509375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):120, 81

               
               
               Conread position:5-175
               
               
               Cow position:chr21:41197806-41197970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:5-216
               
               
               Cow position:chr21:25286760-25286551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:165
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):118, 90

               
               
               Conread position:6-226
               
               
               Cow position:chr21:21223526-21223309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):131, 64

               
               
               Conread position:6-238
               
               
               Cow position:chr21:46607349-46607573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:6-239
               
               
               Cow position:chr21:23397607-23397834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):122, 34

               
               
               Conread position:6-239
               
               
               Cow position:chr21:23800888-23801114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):118, 33

               
               
               Conread position:9-208
               
               
               Cow position:chr21:13417997-13418188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):115, 31

               
               
               Conread position:9-239
               
               
               Cow position:chr21:34564977-34565198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):118, 31

               
               
               Conread position:11-187
               
               
               Cow position:chr21:23397425-23397599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):57, 137

               
               
               Conread position:11-234
               
               
               Cow position:chr21:15239517-15239301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:11-236
               
               
               Cow position:chr21:18379083-18378857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 140

               
               
               Conread position:14-239
               
               
               Cow position:chr21:21181414-21181191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):111, 76

               
               
               Conread position:14-239
               
               
               Cow position:chr21:36371718-36371500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):111, 29

               
               
               Conread position:14-239
               
               
               Cow position:chr21:49649853-49649645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):111, 26

               
               
               Conread position:19-200
               
               
               Cow position:chr21:12087828-12087639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):98, 166

               
               
               Conread position:19-218
               
               
               Cow position:chr21:19859938-19860135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):102, 24

               
               
               Conread position:19-239
               
               
               Cow position:chr21:4276371-4276585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):91, 76

               
               
               Conread position:29-239
               
               
               Cow position:chr21:35997394-35997188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):95, 126

               
               
               Conread position:33-225
               
               
               Cow position:chr21:26753709-26753516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):91, 30

               
               
               Conread position:40-239
               
               
               Cow position:chr21:23768081-23767883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:40-239
               
               
               Cow position:chr21:23786242-23786044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:51-239
               
               
               Cow position:chr21:24698681-24698492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:55-174
               
               
               Cow position:chr21:44789158-44789278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:81-239
               
               
               Cow position:chr21:32903984-32904142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:97-228
               
               
               Cow position:chr21:38774344-38774210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 53

               
               
               Conread position:1-120
               
               
               Cow position:chr22:11745393-11745510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:1-144
               
               
               Cow position:chr22:33763301-33763443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):123, 94

               
               
               Conread position:1-160
               
               
               Cow position:chr22:27469089-27468926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:1-167
               
               
               Cow position:chr22:43873241-43873073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):104, 73

               
               
               Conread position:1-172
               
               
               Cow position:chr22:37554333-37554502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 94

               
               
               Conread position:1-186
               
               
               Cow position:chr22:32690257-32690437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 72

               
               
               Conread position:1-189
               
               
               Cow position:chr22:11877860-11878050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):163, 78

               
               
               Conread position:1-194
               
               
               Cow position:chr22:19223931-19223743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):103, 14

               
               
               Conread position:1-197
               
               
               Cow position:chr22:45291504-45291311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):123, 168

               
               
               Conread position:1-201
               
               
               Cow position:chr22:25477230-25477030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):123, 169

               
               
               Conread position:1-216
               
               
               Cow position:chr22:5384836-5384622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):71, 61

               
               
               Conread position:1-217
               
               
               Cow position:chr22:39983013-39983230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1-221
               
               
               Cow position:chr22:31192394-31192610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:1-226
               
               
               Cow position:chr22:13188062-13187839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):108, 39

               
               
               Conread position:1-228
               
               
               Cow position:chr22:16234338-16234109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-228
               
               
               Cow position:chr22:26057569-26057336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):19, 153

               
               
               Conread position:1-237
               
               
               Cow position:chr22:19040185-19040417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):97, 42

               
               
               Conread position:1-237
               
               
               Cow position:chr22:41684100-41684338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):71, 210

               
               
               Conread position:1-238
               
               
               Cow position:chr22:534691-534448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 217

               
               
               Conread position:1-238
               
               
               Cow position:chr22:8467574-8467336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):110, 14

               
               
               Conread position:1-238
               
               
               Cow position:chr22:11778429-11778662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:1-238
               
               
               Cow position:chr22:42612643-42612405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):123, 211

               
               
               Conread position:1-239
               
               
               Cow position:chr22:139130-139355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):124, 14

               
               
               Conread position:1-239
               
               
               Cow position:chr22:9466792-9466558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):79, 42

               
               
               Conread position:1-239
               
               
               Cow position:chr22:17780547-17780779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):126, 154

               
               
               Conread position:1-239
               
               
               Cow position:chr22:19047630-19047871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 149

               
               
               Conread position:1-239
               
               
               Cow position:chr22:28685509-28685276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):121, 73

               
               
               Conread position:2-111
               
               
               Cow position:chr22:20840051-20839942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:87
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-158
               
               
               Cow position:chr22:32053555-32053399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):123, 12

               
               
               Conread position:2-228
               
               
               Cow position:chr22:28672335-28672102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):70, 21

               
               
               Conread position:2-229
               
               
               Cow position:chr22:41245432-41245201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):122, 30

               
               
               Conread position:2-238
               
               
               Cow position:chr22:29441083-29441313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):125, 12

               
               
               Conread position:2-239
               
               
               Cow position:chr22:34675702-34675468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):103, 107

               
               
               Conread position:2-239
               
               
               Cow position:chr22:43262632-43262403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):15, 39

               
               
               Conread position:3-127
               
               
               Cow position:chr22:17835318-17835194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:3-140
               
               
               Cow position:chr22:28180248-28180109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:3-175
               
               
               Cow position:chr22:23009762-23009932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):69, 141

               
               
               Conread position:3-213
               
               
               Cow position:chr22:29004246-29004448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):121, 72

               
               
               Conread position:3-234
               
               
               Cow position:chr22:9594377-9594141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):115, 27

               
               
               Conread position:3-239
               
               
               Cow position:chr22:27224309-27224073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):10, 38

               
               
               Conread position:3-239
               
               
               Cow position:chr22:45355558-45355326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):107, 78

               
               
               Conread position:4-218
               
               
               Cow position:chr22:4753576-4753790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):118, 88

               
               
               Conread position:4-222
               
               
               Cow position:chr22:22999772-22999555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):120, 91

               
               
               Conread position:4-237
               
               
               Cow position:chr22:5622543-5622768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):124, 58

               
               
               Conread position:4-237
               
               
               Cow position:chr22:41389286-41389056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):125, 11

               
               
               Conread position:5-162
               
               
               Cow position:chr22:19069264-19069110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr22:17184506-17184686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):100, 117

               
               
               Conread position:5-205
               
               
               Cow position:chr22:7287691-7287488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:5-205
               
               
               Cow position:chr22:15424314-15424114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):75, 35

               
               
               Conread position:5-217
               
               
               Cow position:chr22:15358426-15358212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:5-221
               
               
               Cow position:chr22:29868434-29868643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):120, 35

               
               
               Conread position:5-239
               
               
               Cow position:chr22:18486750-18486979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):119, 77

               
               
               Conread position:5-239
               
               
               Cow position:chr22:33386331-33386560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):119, 33

               
               
               Conread position:5-239
               
               
               Cow position:chr22:41927181-41927407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):114, 35

               
               
               Conread position:6-166
               
               
               Cow position:chr22:17074548-17074387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:6-166
               
               
               Cow position:chr22:25168112-25168272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):15, 66

               
               
               Conread position:6-220
               
               
               Cow position:chr22:43352011-43352227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):74, 23

               
               
               Conread position:6-227
               
               
               Cow position:chr22:7301663-7301879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):119, 37

               
               
               Conread position:6-228
               
               
               Cow position:chr22:30429798-30429573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):39, 173

               
               
               Conread position:6-237
               
               
               Cow position:chr22:44923879-44924111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):98, 78

               
               
               Conread position:6-239
               
               
               Cow position:chr22:5927786-5928014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):122, 73

               
               
               Conread position:7-164
               
               
               Cow position:chr22:29256780-29256621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:9-166
               
               
               Cow position:chr22:29090226-29090387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):51, 74

               
               
               Conread position:9-218
               
               
               Cow position:chr22:4026993-4026788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):110, 64

               
               
               Conread position:10-239
               
               
               Cow position:chr22:25715179-25714950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):112, 62

               
               
               Conread position:13-236
               
               
               Cow position:chr22:2913448-2913228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):111, 67

               
               
               Conread position:14-138
               
               
               Cow position:chr22:30521066-30520941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:14-171
               
               
               Cow position:chr22:33067127-33066973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):107, 141

               
               
               Conread position:14-239
               
               
               Cow position:chr22:44835825-44835594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):110, 29

               
               
               Conread position:15-239
               
               
               Cow position:chr22:22210074-22210298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):109, 34

               
               
               Conread position:17-239
               
               
               Cow position:chr22:26760875-26760659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):107, 23

               
               
               Conread position:19-202
               
               
               Cow position:chr22:1081954-1081769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:19-233
               
               
               Cow position:chr22:23580680-23580889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):105, 124

               
               
               Conread position:19-239
               
               
               Cow position:chr22:26941953-26941738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:20-230
               
               
               Cow position:chr22:42945889-42946096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):104, 33

               
               
               Conread position:23-138
               
               
               Cow position:chr22:8430232-8430117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):101, 68

               
               
               Conread position:23-239
               
               
               Cow position:chr22:6574906-6574687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):82, 56

               
               
               Conread position:24-221
               
               
               Cow position:chr22:4651340-4651139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:28-212
               
               
               Cow position:chr22:4036736-4036553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):94, 116

               
               
               Conread position:30-237
               
               
               Cow position:chr22:3296182-3296384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):92, 63

               
               
               Conread position:31-208
               
               
               Cow position:chr22:15398424-15398602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:34-178
               
               
               Cow position:chr22:19208117-19207973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):91, 47

               
               
               Conread position:34-183
               
               
               Cow position:chr22:23270196-23270346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:35-219
               
               
               Cow position:chr22:19262979-19263168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:40-239
               
               
               Cow position:chr22:22997621-22997425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):85, 164

               
               
               Conread position:41-239
               
               
               Cow position:chr22:5337455-5337653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 46

               
               
               Conread position:45-239
               
               
               Cow position:chr22:14119116-14118926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):79, 112

               
               
               Conread position:48-237
               
               
               Cow position:chr22:13274617-13274431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):76, 107

               
               
               Conread position:51-239
               
               
               Cow position:chr22:10649647-10649832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):78, 104

               
               
               Conread position:55-230
               
               
               Cow position:chr22:7102962-7102787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):67, 118

               
               
               Conread position:59-239
               
               
               Cow position:chr22:39293618-39293801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):20, 32

               
               
               Conread position:61-239
               
               
               Cow position:chr22:12535659-12535833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):20, 33

               
               
               Conread position:74-215
               
               
               Cow position:chr22:23016848-23016989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):50, 25

               
               
               Conread position:1-140
               
               
               Cow position:chr23:26067280-26067141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):123, 42

               
               
               Conread position:1-179
               
               
               Cow position:chr23:30256055-30255871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr23:347560-347742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):124, 85

               
               
               Conread position:1-217
               
               
               Cow position:chr23:40651282-40651501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-220
               
               
               Cow position:chr23:18821197-18821414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 33

               
               
               Conread position:1-226
               
               
               Cow position:chr23:26861621-26861405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):201, 37

               
               
               Conread position:1-228
               
               
               Cow position:chr23:7611448-7611231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1-237
               
               
               Cow position:chr23:37223884-37224113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 147

               
               
               Conread position:1-239
               
               
               Cow position:chr23:791847-792079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):124, 51

               
               
               Conread position:1-239
               
               
               Cow position:chr23:21275830-21276070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):97, 44

               
               
               Conread position:1-239
               
               
               Cow position:chr23:40891552-40891312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):123, 216

               
               
               Conread position:2-181
               
               
               Cow position:chr23:9812048-9812223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):13, 95

               
               
               Conread position:2-205
               
               
               Cow position:chr23:21847942-21847738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:2-237
               
               
               Cow position:chr23:22660400-22660630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):11, 93

               
               
               Conread position:2-239
               
               
               Cow position:chr23:5389887-5389651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:2-239
               
               
               Cow position:chr23:16793768-16793537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):122, 41

               
               
               Conread position:2-239
               
               
               Cow position:chr23:35155561-35155326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):103, 12

               
               
               Conread position:3-160
               
               
               Cow position:chr23:24411193-24411034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:3-199
               
               
               Cow position:chr23:4956206-4956015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):118, 153

               
               
               Conread position:3-203
               
               
               Cow position:chr23:22272290-22272493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:3-217
               
               
               Cow position:chr23:28721050-28721259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:170
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):10, 93

               
               
               Conread position:3-218
               
               
               Cow position:chr23:26004211-26004000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):121, 103

               
               
               Conread position:3-225
               
               
               Cow position:chr23:21866928-21866707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):119, 125

               
               
               Conread position:3-231
               
               
               Cow position:chr23:14840330-14840550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):121, 37

               
               
               Conread position:3-239
               
               
               Cow position:chr23:20171768-20171529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:3-239
               
               
               Cow position:chr23:20585514-20585746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):97, 87

               
               
               Conread position:4-180
               
               
               Cow position:chr23:12366284-12366459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 69

               
               
               Conread position:4-194
               
               
               Cow position:chr23:11564193-11564377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):129, 101

               
               
               Conread position:4-205
               
               
               Cow position:chr23:38941807-38941606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):124, 94

               
               
               Conread position:4-217
               
               
               Cow position:chr23:28701173-28700961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):101, 105

               
               
               Conread position:4-239
               
               
               Cow position:chr23:23191978-23192198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):121, 33

               
               
               Conread position:4-239
               
               
               Cow position:chr23:26051225-26050988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:5-228
               
               
               Cow position:chr23:14126748-14126531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):119, 31

               
               
               Conread position:5-239
               
               
               Cow position:chr23:35177506-35177270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):85, 175

               
               
               Conread position:5-239
               
               
               Cow position:chr23:36082770-36082533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):119, 229

               
               
               Conread position:6-203
               
               
               Cow position:chr23:33927992-33927792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):124, 147

               
               
               Conread position:6-216
               
               
               Cow position:chr23:30308086-30307881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):119, 34

               
               
               Conread position:6-239
               
               
               Cow position:chr23:18326988-18326759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):121, 149

               
               
               Conread position:6-239
               
               
               Cow position:chr23:26217739-26217515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):99, 33

               
               
               Conread position:7-150
               
               
               Cow position:chr23:30735967-30736108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):120, 88

               
               
               Conread position:8-236
               
               
               Cow position:chr23:29272292-29272066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):121, 32

               
               
               Conread position:9-193
               
               
               Cow position:chr23:11750953-11751137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):96, 161

               
               
               Conread position:10-227
               
               
               Cow position:chr23:13360006-13359789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 138

               
               
               Conread position:11-218
               
               
               Cow position:chr23:8929961-8930165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):117, 52

               
               
               Conread position:11-237
               
               
               Cow position:chr23:19636083-19636306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 68

               
               
               Conread position:16-173
               
               
               Cow position:chr23:1552782-1552631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):109, 14

               
               
               Conread position:19-226
               
               
               Cow position:chr23:7101355-7101149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):95, 19

               
               
               Conread position:19-239
               
               
               Cow position:chr23:28894784-28895005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):137, 109

               
               
               Conread position:23-163
               
               
               Cow position:chr23:40609533-40609395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):104, 72

               
               
               Conread position:24-228
               
               
               Cow position:chr23:1717383-1717588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:31-135
               
               
               Cow position:chr23:16072185-16072291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 5

               
               
               Conread position:33-233
               
               
               Cow position:chr23:15872535-15872738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):72, 61

               
               
               Conread position:33-238
               
               
               Cow position:chr23:11434104-11434306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):92, 29

               
               
               Conread position:33-238
               
               
               Cow position:chr23:17092340-17092545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):94, 165

               
               
               Conread position:36-201
               
               
               Cow position:chr23:35362629-35362789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):88, 8

               
               
               Conread position:37-239
               
               
               Cow position:chr23:17000858-17000660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):87, 61

               
               
               Conread position:40-234
               
               
               Cow position:chr23:3140998-3140811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):88, 22

               
               
               Conread position:57-239
               
               
               Cow position:chr23:35497894-35498073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):22, 37

               
               
               Conread position:58-238
               
               
               Cow position:chr23:40862479-40862297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:68-235
               
               
               Cow position:chr23:40525861-40526028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):60, 147

               
               
               Conread position:1-180
               
               
               Cow position:chr24:41458275-41458104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):123, 69

               
               
               Conread position:1-184
               
               
               Cow position:chr24:27912889-27912707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):19, 60

               
               
               Conread position:1-216
               
               
               Cow position:chr24:7079944-7079727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):41, 14

               
               
               Conread position:1-217
               
               
               Cow position:chr24:2964480-2964686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:1-227
               
               
               Cow position:chr24:42942957-42943184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 94

               
               
               Conread position:1-234
               
               
               Cow position:chr24:10546225-10546001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):126, 14

               
               
               Conread position:1-237
               
               
               Cow position:chr24:2143911-2143680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):109, 97

               
               
               Conread position:1-237
               
               
               Cow position:chr24:32758600-32758831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):123, 87

               
               
               Conread position:1-239
               
               
               Cow position:chr24:2970445-2970680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:1-239
               
               
               Cow position:chr24:19754740-19754500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):47, 96

               
               
               Conread position:1-239
               
               
               Cow position:chr24:27054569-27054334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):127, 39

               
               
               Conread position:1-239
               
               
               Cow position:chr24:36801542-36801305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):22, 132

               
               
               Conread position:2-185
               
               
               Cow position:chr24:42916227-42916400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):123, 36

               
               
               Conread position:2-186
               
               
               Cow position:chr24:22939848-22939669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):62, 13

               
               
               Conread position:2-188
               
               
               Cow position:chr24:36497575-36497757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):122, 136

               
               
               Conread position:2-219
               
               
               Cow position:chr24:14337889-14337677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):205, 77

               
               
               Conread position:2-237
               
               
               Cow position:chr24:32822615-32822845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):33, 100

               
               
               Conread position:2-238
               
               
               Cow position:chr24:30860795-30860564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):70, 41

               
               
               Conread position:2-239
               
               
               Cow position:chr24:22888753-22888515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):17, 73

               
               
               Conread position:2-239
               
               
               Cow position:chr24:39350065-39350292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):122, 12

               
               
               Conread position:3-145
               
               
               Cow position:chr24:6246228-6246372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:3-158
               
               
               Cow position:chr24:41332423-41332579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:3-218
               
               
               Cow position:chr24:28335404-28335618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):122, 12

               
               
               Conread position:3-218
               
               
               Cow position:chr24:33290160-33290369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):121, 68

               
               
               Conread position:3-225
               
               
               Cow position:chr24:23824273-23824484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):121, 49

               
               
               Conread position:3-228
               
               
               Cow position:chr24:14746804-14746583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):95, 23

               
               
               Conread position:3-238
               
               
               Cow position:chr24:15617315-15617548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):121, 71

               
               
               Conread position:3-239
               
               
               Cow position:chr24:6507607-6507843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):11, 155

               
               
               Conread position:3-239
               
               
               Cow position:chr24:32158115-32158349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):95, 153

               
               
               Conread position:4-147
               
               
               Cow position:chr24:15909780-15909635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:4-186
               
               
               Cow position:chr24:16481154-16481326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:4-186
               
               
               Cow position:chr24:38292014-38291837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):120, 36

               
               
               Conread position:4-217
               
               
               Cow position:chr24:6427862-6427652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:169
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):123, 34

               
               
               Conread position:4-238
               
               
               Cow position:chr24:35827902-35827662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):37, 86

               
               
               Conread position:4-239
               
               
               Cow position:chr24:31258181-31258410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):121, 32

               
               
               Conread position:5-167
               
               
               Cow position:chr24:4785517-4785679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):119, 18

               
               
               Conread position:5-203
               
               
               Cow position:chr24:44074301-44074495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):120, 59

               
               
               Conread position:5-215
               
               
               Cow position:chr24:16055354-16055563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):122, 9

               
               
               Conread position:5-215
               
               
               Cow position:chr24:29389394-29389177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:5-218
               
               
               Cow position:chr24:28279781-28279569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):120, 38

               
               
               Conread position:5-238
               
               
               Cow position:chr24:17981343-17981117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:5-239
               
               
               Cow position:chr24:18786771-18786993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):120, 57

               
               
               Conread position:6-239
               
               
               Cow position:chr24:34368850-34369081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 73

               
               
               Conread position:7-222
               
               
               Cow position:chr24:28349739-28349517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):62, 198

               
               
               Conread position:9-239
               
               
               Cow position:chr24:37945473-37945705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):77, 65

               
               
               Conread position:10-193
               
               
               Cow position:chr24:12136294-12136110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):114, 10

               
               
               Conread position:11-239
               
               
               Cow position:chr24:31378900-31378682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:14-239
               
               
               Cow position:chr24:24311651-24311431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):31, 66

               
               
               Conread position:17-228
               
               
               Cow position:chr24:1438123-1438336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):100, 200

               
               
               Conread position:18-201
               
               
               Cow position:chr24:25165180-25164995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:19-158
               
               
               Cow position:chr24:44929493-44929353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:19-236
               
               
               Cow position:chr24:14617801-14617584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):106, 19

               
               
               Conread position:19-239
               
               
               Cow position:chr24:26455985-26455766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):33, 42

               
               
               Conread position:26-209
               
               
               Cow position:chr24:23176563-23176744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):53, 9

               
               
               Conread position:26-218
               
               
               Cow position:chr24:39742952-39742760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):95, 146

               
               
               Conread position:33-239
               
               
               Cow position:chr24:39681980-39681780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):91, 29

               
               
               Conread position:42-201
               
               
               Cow position:chr24:12452905-12452746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:43-239
               
               
               Cow position:chr24:19612127-19611936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:49-215
               
               
               Cow position:chr24:39474289-39474463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):68, 30

               
               
               Conread position:49-239
               
               
               Cow position:chr24:11201533-11201718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):75, 104

               
               
               Conread position:62-239
               
               
               Cow position:chr24:11456740-11456913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):54, 17

               
               
               Conread position:64-239
               
               
               Cow position:chr24:32085833-32086005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:67-234
               
               
               Cow position:chr24:12263617-12263781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):114, 58

               
               
               Conread position:1-189
               
               
               Cow position:chr25:15025092-15024907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):116, 70

               
               
               Conread position:1-213
               
               
               Cow position:chr25:13321363-13321152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:1-220
               
               
               Cow position:chr25:12932809-12932588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):104, 13

               
               
               Conread position:1-222
               
               
               Cow position:chr25:30021257-30021036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 157

               
               
               Conread position:1-228
               
               
               Cow position:chr25:6178217-6177991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):126, 14

               
               
               Conread position:1-228
               
               
               Cow position:chr25:19524260-19524473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1-238
               
               
               Cow position:chr25:14075487-14075251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 73

               
               
               Conread position:1-238
               
               
               Cow position:chr25:18266346-18266109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:1-239
               
               
               Cow position:chr25:14570550-14570320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):123, 20

               
               
               Conread position:1-239
               
               
               Cow position:chr25:24136261-24136491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):124, 39

               
               
               Conread position:1-239
               
               
               Cow position:chr25:24405549-24405787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):127, 219

               
               
               Conread position:2-233
               
               
               Cow position:chr25:27534736-27534965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):125, 30

               
               
               Conread position:2-234
               
               
               Cow position:chr25:8511910-8512137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):179, 12

               
               
               Conread position:2-237
               
               
               Cow position:chr25:18000348-18000579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):120, 42

               
               
               Conread position:2-239
               
               
               Cow position:chr25:20076681-20076441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:2-239
               
               
               Cow position:chr25:33246096-33245869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:2-239
               
               
               Cow position:chr25:34378913-34379160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):36, 86

               
               
               Conread position:3-162
               
               
               Cow position:chr25:9109521-9109364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):121, 92

               
               
               Conread position:3-205
               
               
               Cow position:chr25:41093956-41094156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):121, 11

               
               
               Conread position:3-230
               
               
               Cow position:chr25:18448993-18448766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):121, 91

               
               
               Conread position:3-238
               
               
               Cow position:chr25:26457495-26457731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:3-239
               
               
               Cow position:chr25:22575347-22575572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):124, 68

               
               
               Conread position:3-239
               
               
               Cow position:chr25:34970637-34970412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):121, 35

               
               
               Conread position:4-217
               
               
               Cow position:chr25:10748313-10748535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):19, 171

               
               
               Conread position:4-217
               
               
               Cow position:chr25:17701811-17702025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):71, 136

               
               
               Conread position:4-230
               
               
               Cow position:chr25:33204904-33205126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):216, 34

               
               
               Conread position:5-164
               
               
               Cow position:chr25:20614903-20614745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):120, 54

               
               
               Conread position:5-193
               
               
               Cow position:chr25:8885508-8885695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:5-216
               
               
               Cow position:chr25:40956807-40957016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):123, 93

               
               
               Conread position:5-233
               
               
               Cow position:chr25:26240719-26240492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):119, 197

               
               
               Conread position:6-208
               
               
               Cow position:chr25:18239690-18239486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):45, 154

               
               
               Conread position:6-234
               
               
               Cow position:chr25:4716435-4716212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:7-216
               
               
               Cow position:chr25:20428496-20428287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):202, 60

               
               
               Conread position:9-146
               
               
               Cow position:chr25:18228352-18228215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):104, 89

               
               
               Conread position:9-228
               
               
               Cow position:chr25:23410835-23410623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):115, 133

               
               
               Conread position:11-233
               
               
               Cow position:chr25:8576867-8576642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):113, 68

               
               
               Conread position:14-239
               
               
               Cow position:chr25:20624766-20624986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):110, 60

               
               
               Conread position:14-239
               
               
               Cow position:chr25:36501069-36501288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):110, 174

               
               
               Conread position:15-186
               
               
               Cow position:chr25:5365702-5365527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):112, 25

               
               
               Conread position:15-239
               
               
               Cow position:chr25:20811204-20811423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 29

               
               
               Conread position:18-239
               
               
               Cow position:chr25:8080892-8080671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):106, 8

               
               
               Conread position:19-195
               
               
               Cow position:chr25:29312171-29312345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):106, 79

               
               
               Conread position:20-162
               
               
               Cow position:chr25:20884923-20885063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):103, 75

               
               
               Conread position:20-228
               
               
               Cow position:chr25:33691715-33691515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):32, 18

               
               
               Conread position:22-234
               
               
               Cow position:chr25:15368857-15368648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):46, 58

               
               
               Conread position:23-185
               
               
               Cow position:chr25:13800113-13799950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:23-228
               
               
               Cow position:chr25:13562594-13562394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):102, 52

               
               
               Conread position:23-239
               
               
               Cow position:chr25:13560052-13560264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):101, 39

               
               
               Conread position:23-239
               
               
               Cow position:chr25:23248579-23248791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):102, 56

               
               
               Conread position:42-228
               
               
               Cow position:chr25:18161426-18161244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):182, 65

               
               
               Conread position:1-165
               
               
               Cow position:chr26:10292981-10292814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):22, 83

               
               
               Conread position:1-186
               
               
               Cow position:chr26:12652041-12652228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):79, 59

               
               
               Conread position:1-199
               
               
               Cow position:chr26:9101909-9102105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1-206
               
               
               Cow position:chr26:34100799-34100996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):126, 22

               
               
               Conread position:1-218
               
               
               Cow position:chr26:10523250-10523462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):124, 80

               
               
               Conread position:1-220
               
               
               Cow position:chr26:16112984-16113206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:1-239
               
               
               Cow position:chr26:9666213-9666442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1-239
               
               
               Cow position:chr26:32215649-32215410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):121, 74

               
               
               Conread position:2-140
               
               
               Cow position:chr26:19649187-19649053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):120, 38

               
               
               Conread position:2-163
               
               
               Cow position:chr26:19332804-19332964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):66, 72

               
               
               Conread position:2-227
               
               
               Cow position:chr26:31466877-31466659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):123, 30

               
               
               Conread position:2-239
               
               
               Cow position:chr26:2769640-2769873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):66, 41

               
               
               Conread position:2-239
               
               
               Cow position:chr26:9632162-9632404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):127, 48

               
               
               Conread position:3-154
               
               
               Cow position:chr26:24493516-24493366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):124, 12

               
               
               Conread position:3-186
               
               
               Cow position:chr26:3186749-3186564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:3-234
               
               
               Cow position:chr26:12520229-12519997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):121, 214

               
               
               Conread position:3-238
               
               
               Cow position:chr26:782732-782965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):118, 37

               
               
               Conread position:3-238
               
               
               Cow position:chr26:34118834-34119070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:3-239
               
               
               Cow position:chr26:7956049-7955816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:180
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):122, 38

               
               
               Conread position:3-239
               
               
               Cow position:chr26:14924683-14924450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):63, 85

               
               
               Conread position:3-239
               
               
               Cow position:chr26:29244595-29244366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):110, 12

               
               
               Conread position:4-178
               
               
               Cow position:chr26:14505702-14505870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:4-226
               
               
               Cow position:chr26:32865691-32865915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):120, 146

               
               
               Conread position:4-227
               
               
               Cow position:chr26:15212010-15211778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):68, 192

               
               
               Conread position:4-239
               
               
               Cow position:chr26:6470075-6470305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 50

               
               
               Conread position:6-140
               
               
               Cow position:chr26:25241825-25241690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:6-200
               
               
               Cow position:chr26:12217043-12216860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:6-201
               
               
               Cow position:chr26:10137544-10137738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):118, 86

               
               
               Conread position:6-227
               
               
               Cow position:chr26:24182855-24183067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):118, 34

               
               
               Conread position:6-229
               
               
               Cow position:chr26:2196393-2196617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):99, 162

               
               
               Conread position:6-239
               
               
               Cow position:chr26:17203945-17204180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):27, 77

               
               
               Conread position:6-239
               
               
               Cow position:chr26:18719454-18719222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):18, 151

               
               
               Conread position:9-237
               
               
               Cow position:chr26:16604487-16604253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:9-239
               
               
               Cow position:chr26:21860016-21859788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):115, 61

               
               
               Conread position:10-228
               
               
               Cow position:chr26:14080897-14080682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):109, 32

               
               
               Conread position:11-239
               
               
               Cow position:chr26:27585965-27585741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):113, 144

               
               
               Conread position:14-239
               
               
               Cow position:chr26:12669388-12669164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):111, 70

               
               
               Conread position:19-169
               
               
               Cow position:chr26:21577915-21578066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:19-238
               
               
               Cow position:chr26:3756402-3756195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):110, 24

               
               
               Conread position:19-239
               
               
               Cow position:chr26:7162226-7162446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):103, 71

               
               
               Conread position:20-227
               
               
               Cow position:chr26:19111096-19110888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:165
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):104, 53

               
               
               Conread position:20-238
               
               
               Cow position:chr26:8651426-8651638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:21-196
               
               
               Cow position:chr26:19768620-19768799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:23-228
               
               
               Cow position:chr26:30605189-30605382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:30-239
               
               
               Cow position:chr26:19903554-19903346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):80, 68

               
               
               Conread position:32-205
               
               
               Cow position:chr26:12579842-12580011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:35-216
               
               
               Cow position:chr26:19935192-19935369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 46

               
               
               Conread position:35-237
               
               
               Cow position:chr26:3019248-3019448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):89, 129

               
               
               Conread position:40-189
               
               
               Cow position:chr26:7387931-7387781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:40-239
               
               
               Cow position:chr26:32854124-32854317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):83, 5

               
               
               Conread position:49-228
               
               
               Cow position:chr26:11567818-11567993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):75, 41

               
               
               Conread position:56-238
               
               
               Cow position:chr26:34169038-34169218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):72, 89

               
               
               Conread position:1-165
               
               
               Cow position:chr27:17875372-17875207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr27:2847624-2847810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):123, 101

               
               
               Conread position:1-189
               
               
               Cow position:chr27:11762928-11762743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):104, 78

               
               
               Conread position:1-195
               
               
               Cow position:chr27:16526071-16525880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):123, 154

               
               
               Conread position:1-205
               
               
               Cow position:chr27:10119313-10119104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):125, 162

               
               
               Conread position:1-212
               
               
               Cow position:chr27:21578805-21578592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:165
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-215
               
               
               Cow position:chr27:30790243-30790449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):99, 51

               
               
               Conread position:1-217
               
               
               Cow position:chr27:24341672-24341888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:170
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):41, 198

               
               
               Conread position:1-221
               
               
               Cow position:chr27:13005619-13005834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1-221
               
               
               Cow position:chr27:15524037-15523810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):54, 91

               
               
               Conread position:1-223
               
               
               Cow position:chr27:13958573-13958351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):124, 35

               
               
               Conread position:1-226
               
               
               Cow position:chr27:16493355-16493575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 81

               
               
               Conread position:1-228
               
               
               Cow position:chr27:25970177-25970397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1-228
               
               
               Cow position:chr27:25998476-25998699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):120, 39

               
               
               Conread position:1-234
               
               
               Cow position:chr27:1536957-1536716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-239
               
               
               Cow position:chr27:2354995-2354761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):14, 61

               
               
               Conread position:1-239
               
               
               Cow position:chr27:8430669-8430432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):126, 162

               
               
               Conread position:1-239
               
               
               Cow position:chr27:19544150-19543912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):123, 80

               
               
               Conread position:1-239
               
               
               Cow position:chr27:20766183-20765952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):107, 120

               
               
               Conread position:1-239
               
               
               Cow position:chr27:27053075-27053302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):123, 48

               
               
               Conread position:1-239
               
               
               Cow position:chr27:30811226-30811456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 37

               
               
               Conread position:2-186
               
               
               Cow position:chr27:25982947-25982768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:2-189
               
               
               Cow position:chr27:11746359-11746547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:2-225
               
               
               Cow position:chr27:24509596-24509816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):122, 66

               
               
               Conread position:2-237
               
               
               Cow position:chr27:14937658-14937423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 32

               
               
               Conread position:3-132
               
               
               Cow position:chr27:22238101-22237972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:3-160
               
               
               Cow position:chr27:1899799-1899642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):121, 52

               
               
               Conread position:3-239
               
               
               Cow position:chr27:6159760-6159988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:3-239
               
               
               Cow position:chr27:24225124-24224886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):126, 35

               
               
               Conread position:4-184
               
               
               Cow position:chr27:26299618-26299796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 46

               
               
               Conread position:4-239
               
               
               Cow position:chr27:11356757-11356533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):121, 10

               
               
               Conread position:4-239
               
               
               Cow position:chr27:13970607-13970381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):16, 91

               
               
               Conread position:5-163
               
               
               Cow position:chr27:1674924-1675082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):128, 10

               
               
               Conread position:5-206
               
               
               Cow position:chr27:23662819-23662621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):119, 150

               
               
               Conread position:5-218
               
               
               Cow position:chr27:8048957-8048752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:6-217
               
               
               Cow position:chr27:26441272-26441070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):121, 9

               
               
               Conread position:6-234
               
               
               Cow position:chr27:29039165-29038938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):118, 49

               
               
               Conread position:8-221
               
               
               Cow position:chr27:22108429-22108213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):89, 153

               
               
               Conread position:9-239
               
               
               Cow position:chr27:19083939-19083708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 223

               
               
               Conread position:10-136
               
               
               Cow position:chr27:9692238-9692111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:11-239
               
               
               Cow position:chr27:12247467-12247684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:12-154
               
               
               Cow position:chr27:6036951-6037095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:14-197
               
               
               Cow position:chr27:25879885-25880068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):110, 147

               
               
               Conread position:14-228
               
               
               Cow position:chr27:27050122-27049913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:14-234
               
               
               Cow position:chr27:6453991-6454212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):31, 107

               
               
               Conread position:14-238
               
               
               Cow position:chr27:30446959-30447182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):78, 73

               
               
               Conread position:15-238
               
               
               Cow position:chr27:21971097-21970879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):109, 21

               
               
               Conread position:15-239
               
               
               Cow position:chr27:26492911-26492695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:19-227
               
               
               Cow position:chr27:21393724-21393511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):53, 202

               
               
               Conread position:20-239
               
               
               Cow position:chr27:26161293-26161509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):104, 75

               
               
               Conread position:22-163
               
               
               Cow position:chr27:11208968-11208831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):6, 43

               
               
               Conread position:23-239
               
               
               Cow position:chr27:783498-783708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:29-163
               
               
               Cow position:chr27:21991329-21991464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:34-197
               
               
               Cow position:chr27:24333814-24333655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):85, 120

               
               
               Conread position:35-179
               
               
               Cow position:chr27:18219201-18219342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):89, 120

               
               
               Conread position:36-224
               
               
               Cow position:chr27:21681520-21681329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):91, 58

               
               
               Conread position:37-239
               
               
               Cow position:chr27:27233825-27234028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 113

               
               
               Conread position:41-237
               
               
               Cow position:chr27:3922679-3922484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):76, 40

               
               
               Conread position:46-229
               
               
               Cow position:chr27:13977731-13977545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 49

               
               
               Conread position:55-218
               
               
               Cow position:chr27:6883857-6884021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):73, 123

               
               
               Conread position:62-227
               
               
               Cow position:chr27:27842075-27841911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):63, 5

               
               
               Conread position:62-238
               
               
               Cow position:chr27:19648112-19647935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 115

               
               
               Conread position:67-218
               
               
               Cow position:chr27:22781883-22782036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):58, 31

               
               
               Conread position:82-224
               
               
               Cow position:chr27:18944175-18944033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):47, 133

               
               
               Conread position:1-154
               
               
               Cow position:chr28:15496820-15496970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:1-159
               
               
               Cow position:chr28:17624980-17625140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:1-170
               
               
               Cow position:chr28:3940001-3940175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):36, 111

               
               
               Conread position:1-200
               
               
               Cow position:chr28:31373296-31373100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):124, 42

               
               
               Conread position:1-216
               
               
               Cow position:chr28:8789343-8789132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):49, 141

               
               
               Conread position:1-222
               
               
               Cow position:chr28:1608381-1608159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):97, 42

               
               
               Conread position:1-227
               
               
               Cow position:chr28:4764068-4763843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):80, 51

               
               
               Conread position:1-228
               
               
               Cow position:chr28:9294301-9294529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):123, 198

               
               
               Conread position:1-230
               
               
               Cow position:chr28:17362409-17362638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):14, 171

               
               
               Conread position:1-232
               
               
               Cow position:chr28:14508176-14508408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):22, 14

               
               
               Conread position:1-234
               
               
               Cow position:chr28:3769473-3769707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):31, 114

               
               
               Conread position:1-237
               
               
               Cow position:chr28:31165791-31166028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1-239
               
               
               Cow position:chr28:6643089-6643328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):75, 209

               
               
               Conread position:1-239
               
               
               Cow position:chr28:6993426-6993655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):126, 72

               
               
               Conread position:1-239
               
               
               Cow position:chr28:19253669-19253435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):124, 42

               
               
               Conread position:2-163
               
               
               Cow position:chr28:34749926-34749763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:2-239
               
               
               Cow position:chr28:19564026-19564276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):70, 237

               
               
               Conread position:2-239
               
               
               Cow position:chr28:21570366-21570143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):126, 41

               
               
               Conread position:2-239
               
               
               Cow position:chr28:23007533-23007778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):70, 232

               
               
               Conread position:3-179
               
               
               Cow position:chr28:15406243-15406073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):127, 37

               
               
               Conread position:3-217
               
               
               Cow position:chr28:19217020-19216795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 161

               
               
               Conread position:3-218
               
               
               Cow position:chr28:24500396-24500178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):82, 93

               
               
               Conread position:3-223
               
               
               Cow position:chr28:25825676-25825893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):121, 104

               
               
               Conread position:3-223
               
               
               Cow position:chr28:26719538-26719314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):69, 212

               
               
               Conread position:3-228
               
               
               Cow position:chr28:5474843-5475065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):123, 92

               
               
               Conread position:3-229
               
               
               Cow position:chr28:5406731-5406524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):214, 40

               
               
               Conread position:3-238
               
               
               Cow position:chr28:1202058-1202285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):124, 11

               
               
               Conread position:4-140
               
               
               Cow position:chr28:24700961-24700823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:4-181
               
               
               Cow position:chr28:3822953-3823125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):120, 91

               
               
               Conread position:4-204
               
               
               Cow position:chr28:17345679-17345879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):121, 49

               
               
               Conread position:4-236
               
               
               Cow position:chr28:15081738-15081959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):120, 36

               
               
               Conread position:4-239
               
               
               Cow position:chr28:4274657-4274887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):121, 68

               
               
               Conread position:4-239
               
               
               Cow position:chr28:11500704-11500931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):121, 39

               
               
               Conread position:5-217
               
               
               Cow position:chr28:23668598-23668807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):117, 36

               
               
               Conread position:5-239
               
               
               Cow position:chr28:7539971-7540204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 75

               
               
               Conread position:8-239
               
               
               Cow position:chr28:9237498-9237270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):199, 0

               
               
               Conread position:8-239
               
               
               Cow position:chr28:20275312-20275082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 35

               
               
               Conread position:9-205
               
               
               Cow position:chr28:23703589-23703393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):115, 85

               
               
               Conread position:9-239
               
               
               Cow position:chr28:11180982-11181209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):112, 29

               
               
               Conread position:11-208
               
               
               Cow position:chr28:5980098-5979906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):119, 29

               
               
               Conread position:11-225
               
               
               Cow position:chr28:15678068-15677851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:11-239
               
               
               Cow position:chr28:33284928-33285158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):94, 98

               
               
               Conread position:11-239
               
               
               Cow position:chr28:34198928-34199152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):113, 29

               
               
               Conread position:13-237
               
               
               Cow position:chr28:9176580-9176797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):112, 44

               
               
               Conread position:14-239
               
               
               Cow position:chr28:12999272-12999050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):55, 27

               
               
               Conread position:15-226
               
               
               Cow position:chr28:18934631-18934419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):61, 55

               
               
               Conread position:18-239
               
               
               Cow position:chr28:13866016-13865799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):56, 99

               
               
               Conread position:19-201
               
               
               Cow position:chr28:16041051-16041227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):103, 122

               
               
               Conread position:19-223
               
               
               Cow position:chr28:20963355-20963561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:22-233
               
               
               Cow position:chr28:11007369-11007157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):99, 21

               
               
               Conread position:24-237
               
               
               Cow position:chr28:7157003-7156791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):100, 38

               
               
               Conread position:25-238
               
               
               Cow position:chr28:17601707-17601919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):99, 184

               
               
               Conread position:33-205
               
               
               Cow position:chr28:25340429-25340259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):92, 26

               
               
               Conread position:36-228
               
               
               Cow position:chr28:8336118-8335925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:40-228
               
               
               Cow position:chr28:7805269-7805458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):84, 150

               
               
               Conread position:47-213
               
               
               Cow position:chr28:21873906-21873738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:66-234
               
               
               Cow position:chr28:12046786-12046956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):58, 152

               
               
               Conread position:98-239
               
               
               Cow position:chr28:16687122-16686979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:1-96
               
               
               Cow position:chr29:19189567-19189472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:81
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-132
               
               
               Cow position:chr29:6149933-6150064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:1-140
               
               
               Cow position:chr29:21534263-21534401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):126, 45

               
               
               Conread position:1-149
               
               
               Cow position:chr29:19674-19526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):123, 16

               
               
               Conread position:1-176
               
               
               Cow position:chr29:21174522-21174696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):118, 83

               
               
               Conread position:1-177
               
               
               Cow position:chr29:11071502-11071680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):123, 42

               
               
               Conread position:1-179
               
               
               Cow position:chr29:18021497-18021678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-217
               
               
               Cow position:chr29:10318790-10318568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):73, 199

               
               
               Conread position:1-227
               
               
               Cow position:chr29:35442277-35442505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:1-234
               
               
               Cow position:chr29:11766899-11766681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:1-237
               
               
               Cow position:chr29:21186689-21186923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):121, 88

               
               
               Conread position:1-239
               
               
               Cow position:chr29:356509-356268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 162

               
               
               Conread position:1-239
               
               
               Cow position:chr29:1340966-1340731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):124, 13

               
               
               Conread position:1-239
               
               
               Cow position:chr29:5616683-5616921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):124, 215

               
               
               Conread position:1-239
               
               
               Cow position:chr29:6208245-6208013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:1-239
               
               
               Cow position:chr29:11366418-11366185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:1-239
               
               
               Cow position:chr29:11677278-11677509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):121, 13

               
               
               Conread position:1-239
               
               
               Cow position:chr29:13634116-13634352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 68

               
               
               Conread position:1-239
               
               
               Cow position:chr29:29302478-29302711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):103, 37

               
               
               Conread position:2-120
               
               
               Cow position:chr29:36085366-36085249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):78, 27

               
               
               Conread position:2-149
               
               
               Cow position:chr29:42686534-42686683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:2-154
               
               
               Cow position:chr29:32080730-32080577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):96, 106

               
               
               Conread position:2-165
               
               
               Cow position:chr29:943007-942839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:2-176
               
               
               Cow position:chr29:23742082-23742254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):124, 60

               
               
               Conread position:2-200
               
               
               Cow position:chr29:2274661-2274855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):122, 38

               
               
               Conread position:2-239
               
               
               Cow position:chr29:4691205-4691444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):108, 50

               
               
               Conread position:3-163
               
               
               Cow position:chr29:30544242-30544403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):12, 83

               
               
               Conread position:3-189
               
               
               Cow position:chr29:27688560-27688743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):121, 42

               
               
               Conread position:3-191
               
               
               Cow position:chr29:21012163-21012348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):119, 35

               
               
               Conread position:3-229
               
               
               Cow position:chr29:18073119-18072899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:3-238
               
               
               Cow position:chr29:15940455-15940684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:3-239
               
               
               Cow position:chr29:7663091-7663323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:3-239
               
               
               Cow position:chr29:26318035-26317798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):102, 219

               
               
               Conread position:3-239
               
               
               Cow position:chr29:29559539-29559773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):125, 59

               
               
               Conread position:3-239
               
               
               Cow position:chr29:30350748-30350986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:4-164
               
               
               Cow position:chr29:9662197-9662036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:4-165
               
               
               Cow position:chr29:8862299-8862461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):68, 11

               
               
               Conread position:4-178
               
               
               Cow position:chr29:44135156-44135330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):113, 10

               
               
               Conread position:4-183
               
               
               Cow position:chr29:19607344-19607523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):120, 11

               
               
               Conread position:4-200
               
               
               Cow position:chr29:708950-709149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):45, 10

               
               
               Conread position:4-205
               
               
               Cow position:chr29:41083322-41083128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):121, 28

               
               
               Conread position:4-235
               
               
               Cow position:chr29:10153611-10153845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):71, 158

               
               
               Conread position:4-237
               
               
               Cow position:chr29:18541228-18541007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):201, 124

               
               
               Conread position:4-239
               
               
               Cow position:chr29:11005911-11005680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):123, 11

               
               
               Conread position:5-163
               
               
               Cow position:chr29:3050349-3050192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):96, 104

               
               
               Conread position:5-204
               
               
               Cow position:chr29:44550686-44550477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):99, 90

               
               
               Conread position:5-233
               
               
               Cow position:chr29:942801-942584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:5-237
               
               
               Cow position:chr29:18963915-18963681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:5-237
               
               
               Cow position:chr29:26299150-26298923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):100, 152

               
               
               Conread position:5-239
               
               
               Cow position:chr29:6772312-6772081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):18, 70

               
               
               Conread position:5-239
               
               
               Cow position:chr29:21265941-21265709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):122, 74

               
               
               Conread position:6-154
               
               
               Cow position:chr29:8794533-8794381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:6-239
               
               
               Cow position:chr29:39023158-39023402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:11-169
               
               
               Cow position:chr29:15042619-15042465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):116, 29

               
               
               Conread position:11-200
               
               
               Cow position:chr29:7407730-7407915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):113, 59

               
               
               Conread position:12-217
               
               
               Cow position:chr29:40337368-40337570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:13-239
               
               
               Cow position:chr29:26985400-26985173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):111, 209

               
               
               Conread position:14-239
               
               
               Cow position:chr29:7054582-7054365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):114, 29

               
               
               Conread position:14-239
               
               
               Cow position:chr29:9512427-9512207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):110, 26

               
               
               Conread position:14-239
               
               
               Cow position:chr29:21675562-21675343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):108, 38

               
               
               Conread position:14-239
               
               
               Cow position:chr29:22895899-22895672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:14-239
               
               
               Cow position:chr29:37960806-37961030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):203, 48

               
               
               Conread position:15-239
               
               
               Cow position:chr29:4367894-4367671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):90, 48

               
               
               Conread position:19-228
               
               
               Cow position:chr29:4444885-4444674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:32-239
               
               
               Cow position:chr29:14758709-14758913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):96, 125

               
               
               Conread position:34-237
               
               
               Cow position:chr29:25426507-25426706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):91, 61

               
               
               Conread position:35-229
               
               
               Cow position:chr29:13554288-13554098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):69, 126

               
               
               Conread position:55-228
               
               
               Cow position:chr29:25923831-25924005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):69, 40

               
               
               Conread position:60-237
               
               
               Cow position:chr29:16055006-16055179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:76-238
               
               
               Cow position:chr29:19897719-19897557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):48, 56

               
               
               Conread position:1-109
               
               
               Cow position:chr3:39894409-39894519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:1-154
               
               
               Cow position:chr3:33797841-33797688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):127, 61

               
               
               Conread position:1-160
               
               
               Cow position:chr3:43591057-43590894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1-164
               
               
               Cow position:chr3:68085952-68086111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-166
               
               
               Cow position:chr3:26740878-26741035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:1-176
               
               
               Cow position:chr3:31247823-31247654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):123, 34

               
               
               Conread position:1-202
               
               
               Cow position:chr3:37186989-37186787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:1-208
               
               
               Cow position:chr3:24300528-24300316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):33, 201

               
               
               Conread position:1-208
               
               
               Cow position:chr3:40100548-40100764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:1-208
               
               
               Cow position:chr3:70354077-70354276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):123, 17

               
               
               Conread position:1-216
               
               
               Cow position:chr3:25477973-25477752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):71, 159

               
               
               Conread position:1-218
               
               
               Cow position:chr3:17633883-17634098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):125, 59

               
               
               Conread position:1-218
               
               
               Cow position:chr3:60389933-60389708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1-226
               
               
               Cow position:chr3:64536408-64536623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):127, 16

               
               
               Conread position:1-227
               
               
               Cow position:chr3:55373404-55373630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 153

               
               
               Conread position:1-231
               
               
               Cow position:chr3:68342098-68342319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):203, 80

               
               
               Conread position:1-233
               
               
               Cow position:chr3:15654988-15655216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):123, 39

               
               
               Conread position:1-233
               
               
               Cow position:chr3:74205646-74205877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):118, 154

               
               
               Conread position:1-237
               
               
               Cow position:chr3:9630044-9629813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):10, 95

               
               
               Conread position:1-237
               
               
               Cow position:chr3:62291970-62292194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):180, 33

               
               
               Conread position:1-238
               
               
               Cow position:chr3:11919876-11920111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):126, 60

               
               
               Conread position:1-238
               
               
               Cow position:chr3:15221354-15221593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:1-239
               
               
               Cow position:chr3:3036760-3037002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):104, 210

               
               
               Conread position:1-239
               
               
               Cow position:chr3:18725483-18725713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):123, 13

               
               
               Conread position:1-239
               
               
               Cow position:chr3:20471201-20471439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):20, 64

               
               
               Conread position:1-239
               
               
               Cow position:chr3:26088834-26089077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:186
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):97, 214

               
               
               Conread position:1-239
               
               
               Cow position:chr3:41550214-41550451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:1-239
               
               
               Cow position:chr3:41718552-41718320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):123, 42

               
               
               Conread position:1-239
               
               
               Cow position:chr3:51492946-51492708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):121, 89

               
               
               Conread position:1-239
               
               
               Cow position:chr3:58175062-58174833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):123, 91

               
               
               Conread position:1-239
               
               
               Cow position:chr3:64319346-64319121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):123, 48

               
               
               Conread position:1-239
               
               
               Cow position:chr3:73764034-73764268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):76, 143

               
               
               Conread position:2-135
               
               
               Cow position:chr3:18865872-18866005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):122, 15

               
               
               Conread position:2-159
               
               
               Cow position:chr3:62798627-62798781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):119, 38

               
               
               Conread position:2-174
               
               
               Cow position:chr3:48211665-48211499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):122, 21

               
               
               Conread position:2-186
               
               
               Cow position:chr3:43653956-43654133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):49, 94

               
               
               Conread position:2-200
               
               
               Cow position:chr3:891424-891231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):122, 41

               
               
               Conread position:2-205
               
               
               Cow position:chr3:25076005-25076209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:2-212
               
               
               Cow position:chr3:37485639-37485846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:2-212
               
               
               Cow position:chr3:64172602-64172390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:2-217
               
               
               Cow position:chr3:65771174-65771381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):10, 71

               
               
               Conread position:2-220
               
               
               Cow position:chr3:20092364-20092579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):113, 122

               
               
               Conread position:2-225
               
               
               Cow position:chr3:56637813-56637602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:2-226
               
               
               Cow position:chr3:61116692-61116917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):122, 19

               
               
               Conread position:2-228
               
               
               Cow position:chr3:57634425-57634195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):94, 13

               
               
               Conread position:2-233
               
               
               Cow position:chr3:26493077-26493300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):123, 59

               
               
               Conread position:2-234
               
               
               Cow position:chr3:11309980-11310212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):125, 53

               
               
               Conread position:2-237
               
               
               Cow position:chr3:27532500-27532728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):120, 53

               
               
               Conread position:2-239
               
               
               Cow position:chr3:5365845-5365604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):69, 197

               
               
               Conread position:2-239
               
               
               Cow position:chr3:18216615-18216844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):189, 30

               
               
               Conread position:2-239
               
               
               Cow position:chr3:48629432-48629666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:2-239
               
               
               Cow position:chr3:50281591-50281826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):122, 42

               
               
               Conread position:2-239
               
               
               Cow position:chr3:58764906-58765152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):69, 239

               
               
               Conread position:2-239
               
               
               Cow position:chr3:74611728-74611491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):10, 86

               
               
               Conread position:3-165
               
               
               Cow position:chr3:8746074-8746234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:3-210
               
               
               Cow position:chr3:2199043-2198835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):102, 107

               
               
               Conread position:3-218
               
               
               Cow position:chr3:51780836-51781045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):16, 33

               
               
               Conread position:3-222
               
               
               Cow position:chr3:64484409-64484191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):121, 199

               
               
               Conread position:3-223
               
               
               Cow position:chr3:9074185-9074406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr3:5601008-5601228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):121, 40

               
               
               Conread position:3-228
               
               
               Cow position:chr3:62884357-62884143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):121, 69

               
               
               Conread position:3-239
               
               
               Cow position:chr3:16343770-16343523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):102, 55

               
               
               Conread position:3-239
               
               
               Cow position:chr3:58131151-58130919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):122, 95

               
               
               Conread position:4-215
               
               
               Cow position:chr3:73741710-73741922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):121, 151

               
               
               Conread position:4-218
               
               
               Cow position:chr3:23111356-23111571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):124, 10

               
               
               Conread position:4-227
               
               
               Cow position:chr3:8752944-8752724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):121, 39

               
               
               Conread position:4-237
               
               
               Cow position:chr3:77225271-77225044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:4-239
               
               
               Cow position:chr3:23091819-23092051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):121, 94

               
               
               Conread position:4-239
               
               
               Cow position:chr3:63146998-63147228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):120, 10

               
               
               Conread position:4-239
               
               
               Cow position:chr3:73436282-73436516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):118, 10

               
               
               Conread position:5-196
               
               
               Cow position:chr3:909472-909667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:5-205
               
               
               Cow position:chr3:49131904-49132106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):63, 31

               
               
               Conread position:5-208
               
               
               Cow position:chr3:1004793-1004599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:5-208
               
               
               Cow position:chr3:61411279-61411082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):122, 150

               
               
               Conread position:5-212
               
               
               Cow position:chr3:30839401-30839200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):7, 47

               
               
               Conread position:5-227
               
               
               Cow position:chr3:24539031-24538812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):119, 150

               
               
               Conread position:5-229
               
               
               Cow position:chr3:23945277-23945053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):119, 66

               
               
               Conread position:5-233
               
               
               Cow position:chr3:59608655-59608432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:5-239
               
               
               Cow position:chr3:12255630-12255404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):120, 35

               
               
               Conread position:5-239
               
               
               Cow position:chr3:20993972-20993737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):119, 188

               
               
               Conread position:5-239
               
               
               Cow position:chr3:50614800-50614564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:5-239
               
               
               Cow position:chr3:57829926-57830162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):61, 30

               
               
               Conread position:5-239
               
               
               Cow position:chr3:58447909-58448135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):119, 55

               
               
               Conread position:6-203
               
               
               Cow position:chr3:22953728-22953919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:6-233
               
               
               Cow position:chr3:42480771-42480549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):119, 77

               
               
               Conread position:6-239
               
               
               Cow position:chr3:18213981-18214216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):118, 32

               
               
               Conread position:6-239
               
               
               Cow position:chr3:29507739-29507505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):122, 92

               
               
               Conread position:6-239
               
               
               Cow position:chr3:42584695-42584467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):118, 68

               
               
               Conread position:6-239
               
               
               Cow position:chr3:58973452-58973220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):31, 69

               
               
               Conread position:9-225
               
               
               Cow position:chr3:14505760-14505975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):115, 195

               
               
               Conread position:9-239
               
               
               Cow position:chr3:56483674-56483438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:9-239
               
               
               Cow position:chr3:74846552-74846785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 220

               
               
               Conread position:11-166
               
               
               Cow position:chr3:29291832-29291684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 85

               
               
               Conread position:11-200
               
               
               Cow position:chr3:22271304-22271488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):119, 49

               
               
               Conread position:11-218
               
               
               Cow position:chr3:53509543-53509749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):127, 34

               
               
               Conread position:11-233
               
               
               Cow position:chr3:54340270-54340490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):117, 59

               
               
               Conread position:11-237
               
               
               Cow position:chr3:31932953-31933170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:11-239
               
               
               Cow position:chr3:55991717-55991940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):20, 33

               
               
               Conread position:12-239
               
               
               Cow position:chr3:28238433-28238645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):112, 41

               
               
               Conread position:14-159
               
               
               Cow position:chr3:67274975-67275126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 99

               
               
               Conread position:14-239
               
               
               Cow position:chr3:39910910-39911130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):115, 67

               
               
               Conread position:14-239
               
               
               Cow position:chr3:52835731-52835960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):67, 71

               
               
               Conread position:15-223
               
               
               Cow position:chr3:6690399-6690194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):89, 94

               
               
               Conread position:15-239
               
               
               Cow position:chr3:58291744-58291966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):109, 140

               
               
               Conread position:19-207
               
               
               Cow position:chr3:34085914-34086099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):105, 19

               
               
               Conread position:19-216
               
               
               Cow position:chr3:10431744-10431550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):105, 136

               
               
               Conread position:19-238
               
               
               Cow position:chr3:54862278-54862487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:19-238
               
               
               Cow position:chr3:58632706-58632492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):105, 131

               
               
               Conread position:19-239
               
               
               Cow position:chr3:3736444-3736222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 210

               
               
               Conread position:19-239
               
               
               Cow position:chr3:34675867-34675647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):105, 195

               
               
               Conread position:19-239
               
               
               Cow position:chr3:54881919-54881687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:22-238
               
               
               Cow position:chr3:61009304-61009509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):8, 22

               
               
               Conread position:23-239
               
               
               Cow position:chr3:53091619-53091417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:24-123
               
               
               Cow position:chr3:76615040-76614941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:82
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:24-239
               
               
               Cow position:chr3:48271465-48271257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):101, 56

               
               
               Conread position:26-126
               
               
               Cow position:chr3:20878079-20878179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:84
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:26-238
               
               
               Cow position:chr3:53588247-53588458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:165
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):99, 58

               
               
               Conread position:28-239
               
               
               Cow position:chr3:18458531-18458733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:28-239
               
               
               Cow position:chr3:28478211-28478016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:29-239
               
               
               Cow position:chr3:25251039-25250836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):45, 125

               
               
               Conread position:29-239
               
               
               Cow position:chr3:35278705-35278499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):166, 63

               
               
               Conread position:33-239
               
               
               Cow position:chr3:68262893-68262690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):92, 39

               
               
               Conread position:36-183
               
               
               Cow position:chr3:36204680-36204532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:36-239
               
               
               Cow position:chr3:8457782-8457581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):88, 153

               
               
               Conread position:40-183
               
               
               Cow position:chr3:46094945-46094803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:40-184
               
               
               Cow position:chr3:75142460-75142598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 98

               
               
               Conread position:40-225
               
               
               Cow position:chr3:42563567-42563394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):85, 50

               
               
               Conread position:40-237
               
               
               Cow position:chr3:5419740-5419934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):84, 115

               
               
               Conread position:40-239
               
               
               Cow position:chr3:36100958-36100762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):84, 65

               
               
               Conread position:40-239
               
               
               Cow position:chr3:66707946-66708144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):85, 24

               
               
               Conread position:42-237
               
               
               Cow position:chr3:35873852-35874039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:45-224
               
               
               Cow position:chr3:37452183-37452014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):80, 23

               
               
               Conread position:50-233
               
               
               Cow position:chr3:33327823-33327638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):78, 176

               
               
               Conread position:57-220
               
               
               Cow position:chr3:4329426-4329266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 100

               
               
               Conread position:58-216
               
               
               Cow position:chr3:13909603-13909449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):66, 99

               
               
               Conread position:81-239
               
               
               Cow position:chr3:55778116-55777960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:86-238
               
               
               Cow position:chr3:15684844-15684997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:94-238
               
               
               Cow position:chr3:40629712-40629856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 93

               
               
               Conread position:107-239
               
               
               Cow position:chr3:77981260-77981393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-164
               
               
               Cow position:chr4:34762157-34762319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):126, 61

               
               
               Conread position:1-166
               
               
               Cow position:chr4:49794847-49794674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):71, 160

               
               
               Conread position:1-172
               
               
               Cow position:chr4:12561215-12561047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:1-183
               
               
               Cow position:chr4:10836357-10836172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):10, 26

               
               
               Conread position:1-184
               
               
               Cow position:chr4:2169247-2169063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 177

               
               
               Conread position:1-195
               
               
               Cow position:chr4:26373501-26373689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):127, 29

               
               
               Conread position:1-198
               
               
               Cow position:chr4:62412031-62411832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):123, 80

               
               
               Conread position:1-208
               
               
               Cow position:chr4:24187423-24187640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:1-218
               
               
               Cow position:chr4:2610399-2610190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):201, 88

               
               
               Conread position:1-221
               
               
               Cow position:chr4:10837203-10837422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):122, 138

               
               
               Conread position:1-222
               
               
               Cow position:chr4:5913167-5913389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):123, 148

               
               
               Conread position:1-223
               
               
               Cow position:chr4:21063609-21063833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):23, 217

               
               
               Conread position:1-224
               
               
               Cow position:chr4:17378667-17378882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):34, 41

               
               
               Conread position:1-228
               
               
               Cow position:chr4:44279756-44279988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-229
               
               
               Cow position:chr4:9800180-9799959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:1-237
               
               
               Cow position:chr4:37035056-37035290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 212

               
               
               Conread position:1-238
               
               
               Cow position:chr4:30671236-30671464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):121, 149

               
               
               Conread position:1-239
               
               
               Cow position:chr4:20066043-20066278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):124, 73

               
               
               Conread position:1-239
               
               
               Cow position:chr4:21072976-21073209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):126, 104

               
               
               Conread position:1-239
               
               
               Cow position:chr4:22235504-22235271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):124, 61

               
               
               Conread position:1-239
               
               
               Cow position:chr4:23167076-23166848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 39

               
               
               Conread position:1-239
               
               
               Cow position:chr4:23758980-23758748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):123, 42

               
               
               Conread position:1-239
               
               
               Cow position:chr4:35870382-35870145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):127, 54

               
               
               Conread position:1-239
               
               
               Cow position:chr4:40822933-40823173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-239
               
               
               Cow position:chr4:63471893-63472131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):76, 210

               
               
               Conread position:2-149
               
               
               Cow position:chr4:20600113-20599963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:2-176
               
               
               Cow position:chr4:18956487-18956655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):122, 38

               
               
               Conread position:2-195
               
               
               Cow position:chr4:35471495-35471306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):122, 79

               
               
               Conread position:2-205
               
               
               Cow position:chr4:24433156-24432954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):122, 12

               
               
               Conread position:2-213
               
               
               Cow position:chr4:17304213-17304427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):41, 150

               
               
               Conread position:2-217
               
               
               Cow position:chr4:45871688-45871904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):122, 42

               
               
               Conread position:2-218
               
               
               Cow position:chr4:22449344-22449561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):126, 141

               
               
               Conread position:2-228
               
               
               Cow position:chr4:12697807-12697591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):128, 36

               
               
               Conread position:2-229
               
               
               Cow position:chr4:961469-961703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:2-233
               
               
               Cow position:chr4:39767527-39767300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):123, 105

               
               
               Conread position:2-238
               
               
               Cow position:chr4:28151706-28151463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):122, 72

               
               
               Conread position:2-239
               
               
               Cow position:chr4:10992023-10992255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):122, 153

               
               
               Conread position:2-239
               
               
               Cow position:chr4:27997872-27997626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:2-239
               
               
               Cow position:chr4:36945017-36945253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):120, 13

               
               
               Conread position:2-239
               
               
               Cow position:chr4:45919211-45918978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):123, 79

               
               
               Conread position:2-239
               
               
               Cow position:chr4:52088104-52087869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:3-130
               
               
               Cow position:chr4:3630626-3630498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:3-166
               
               
               Cow position:chr4:45115602-45115766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:3-189
               
               
               Cow position:chr4:8083613-8083809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:3-190
               
               
               Cow position:chr4:19334705-19334893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):76, 94

               
               
               Conread position:3-208
               
               
               Cow position:chr4:51605443-51605642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):9, 21

               
               
               Conread position:3-217
               
               
               Cow position:chr4:55938075-55937868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):54, 80

               
               
               Conread position:3-222
               
               
               Cow position:chr4:38699980-38700201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):121, 79

               
               
               Conread position:3-223
               
               
               Cow position:chr4:58834223-58834449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):99, 11

               
               
               Conread position:3-229
               
               
               Cow position:chr4:53752705-53752479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):41, 160

               
               
               Conread position:3-233
               
               
               Cow position:chr4:36813553-36813324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):122, 40

               
               
               Conread position:3-234
               
               
               Cow position:chr4:6208631-6208406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):121, 17

               
               
               Conread position:3-237
               
               
               Cow position:chr4:58706998-58707237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:3-239
               
               
               Cow position:chr4:184464-184234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):113, 92

               
               
               Conread position:3-239
               
               
               Cow position:chr4:2121222-2121454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):95, 156

               
               
               Conread position:3-239
               
               
               Cow position:chr4:6166137-6166362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):203, 37

               
               
               Conread position:3-239
               
               
               Cow position:chr4:22528211-22528443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):121, 23

               
               
               Conread position:3-239
               
               
               Cow position:chr4:27371689-27371919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):126, 11

               
               
               Conread position:3-239
               
               
               Cow position:chr4:28065573-28065808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):184, 41

               
               
               Conread position:3-239
               
               
               Cow position:chr4:44665195-44665428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):124, 189

               
               
               Conread position:4-162
               
               
               Cow position:chr4:20279657-20279505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):124, 34

               
               
               Conread position:4-228
               
               
               Cow position:chr4:30131510-30131293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:4-228
               
               
               Cow position:chr4:31758446-31758219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:4-237
               
               
               Cow position:chr4:23495084-23494869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):121, 36

               
               
               Conread position:4-237
               
               
               Cow position:chr4:29709584-29709823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):74, 211

               
               
               Conread position:4-238
               
               
               Cow position:chr4:22249274-22249506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):121, 45

               
               
               Conread position:4-239
               
               
               Cow position:chr4:25973074-25972840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):101, 105

               
               
               Conread position:4-239
               
               
               Cow position:chr4:40433730-40433961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):124, 39

               
               
               Conread position:5-154
               
               
               Cow position:chr4:38182078-38181934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:6-228
               
               
               Cow position:chr4:31348008-31348233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):66, 119

               
               
               Conread position:6-229
               
               
               Cow position:chr4:50769593-50769816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):118, 37

               
               
               Conread position:6-234
               
               
               Cow position:chr4:1800079-1799855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):123, 78

               
               
               Conread position:6-238
               
               
               Cow position:chr4:21249854-21250088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):118, 21

               
               
               Conread position:9-129
               
               
               Cow position:chr4:49658720-49658600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:9-221
               
               
               Cow position:chr4:21862699-21862908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):71, 145

               
               
               Conread position:9-221
               
               
               Cow position:chr4:45234701-45234915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:9-237
               
               
               Cow position:chr4:31172843-31172620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:10-208
               
               
               Cow position:chr4:52226173-52225978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):114, 150

               
               
               Conread position:10-237
               
               
               Cow position:chr4:5798134-5797908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):114, 33

               
               
               Conread position:11-221
               
               
               Cow position:chr4:23311101-23311303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):113, 87

               
               
               Conread position:13-183
               
               
               Cow position:chr4:65167702-65167869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:14-179
               
               
               Cow position:chr4:53616993-53616828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):108, 81

               
               
               Conread position:14-194
               
               
               Cow position:chr4:51433576-51433395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:14-238
               
               
               Cow position:chr4:60031069-60030848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):111, 84

               
               
               Conread position:14-239
               
               
               Cow position:chr4:19307420-19307203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 68

               
               
               Conread position:14-239
               
               
               Cow position:chr4:21259389-21259159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):51, 150

               
               
               Conread position:14-239
               
               
               Cow position:chr4:65406211-65406425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):110, 25

               
               
               Conread position:15-208
               
               
               Cow position:chr4:2596707-2596903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:15-239
               
               
               Cow position:chr4:30475-30693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):110, 23

               
               
               Conread position:18-227
               
               
               Cow position:chr4:51123230-51123010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):10, 118

               
               
               Conread position:18-229
               
               
               Cow position:chr4:34369283-34369500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:18-239
               
               
               Cow position:chr4:5580721-5580499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):6, 198

               
               
               Conread position:19-198
               
               
               Cow position:chr4:7342335-7342513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 12

               
               
               Conread position:19-228
               
               
               Cow position:chr4:38877928-38877713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):79, 47

               
               
               Conread position:19-237
               
               
               Cow position:chr4:22115766-22115553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):105, 141

               
               
               Conread position:19-239
               
               
               Cow position:chr4:21365563-21365349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:19-239
               
               
               Cow position:chr4:37881092-37880875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):109, 24

               
               
               Conread position:21-238
               
               
               Cow position:chr4:14550995-14550783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):15, 76

               
               
               Conread position:22-239
               
               
               Cow position:chr4:65116036-65116259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):102, 125

               
               
               Conread position:24-237
               
               
               Cow position:chr4:243387-243173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 85

               
               
               Conread position:27-218
               
               
               Cow position:chr4:20279479-20279289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:152
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):101, 7

               
               
               Conread position:36-228
               
               
               Cow position:chr4:5002908-5002716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):33, 127

               
               
               Conread position:39-239
               
               
               Cow position:chr4:1374499-1374305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):85, 33

               
               
               Conread position:40-239
               
               
               Cow position:chr4:40622962-40623157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):88, 41

               
               
               Conread position:43-239
               
               
               Cow position:chr4:54146330-54146520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):82, 101

               
               
               Conread position:48-208
               
               
               Cow position:chr4:48499948-48499792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):80, 50

               
               
               Conread position:57-215
               
               
               Cow position:chr4:45952265-45952414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):67, 37

               
               
               Conread position:61-234
               
               
               Cow position:chr4:61624467-61624641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):67, 89

               
               
               Conread position:1-154
               
               
               Cow position:chr5:39134047-39134202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:1-161
               
               
               Cow position:chr5:27293458-27293618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):123, 13

               
               
               Conread position:1-167
               
               
               Cow position:chr5:18695367-18695205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):127, 14

               
               
               Conread position:1-174
               
               
               Cow position:chr5:42049892-42049723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):123, 39

               
               
               Conread position:1-180
               
               
               Cow position:chr5:33340923-33341104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):27, 47

               
               
               Conread position:1-180
               
               
               Cow position:chr5:33342651-33342832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):27, 47

               
               
               Conread position:1-186
               
               
               Cow position:chr5:3059130-3058950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):128, 42

               
               
               Conread position:1-189
               
               
               Cow position:chr5:36027937-36028121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 42

               
               
               Conread position:1-199
               
               
               Cow position:chr5:41605604-41605803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-199
               
               
               Cow position:chr5:56385426-56385228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):124, 97

               
               
               Conread position:1-200
               
               
               Cow position:chr5:7723878-7723677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 58

               
               
               Conread position:1-200
               
               
               Cow position:chr5:29756548-29756350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:1-203
               
               
               Cow position:chr5:23640806-23641000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):123, 42

               
               
               Conread position:1-205
               
               
               Cow position:chr5:75687118-75687322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):124, 22

               
               
               Conread position:1-214
               
               
               Cow position:chr5:58344071-58343857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-216
               
               
               Cow position:chr5:15483248-15483028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):53, 111

               
               
               Conread position:1-218
               
               
               Cow position:chr5:21530898-21531110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):119, 14

               
               
               Conread position:1-225
               
               
               Cow position:chr5:23527417-23527646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:1-234
               
               
               Cow position:chr5:25681148-25681370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):123, 94

               
               
               Conread position:1-239
               
               
               Cow position:chr5:28035955-28035717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):76, 19

               
               
               Conread position:1-239
               
               
               Cow position:chr5:34914344-34914579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):123, 31

               
               
               Conread position:1-239
               
               
               Cow position:chr5:41637075-41636846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):124, 42

               
               
               Conread position:1-239
               
               
               Cow position:chr5:47836764-47836522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):19, 96

               
               
               Conread position:1-239
               
               
               Cow position:chr5:48178169-48178411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):119, 208

               
               
               Conread position:1-239
               
               
               Cow position:chr5:48758153-48757913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):123, 151

               
               
               Conread position:1-239
               
               
               Cow position:chr5:66190197-66189963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:2-105
               
               
               Cow position:chr5:19394296-19394399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-137
               
               
               Cow position:chr5:55411832-55411966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):122, 24

               
               
               Conread position:2-159
               
               
               Cow position:chr5:45028920-45028763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):122, 150

               
               
               Conread position:2-222
               
               
               Cow position:chr5:25922607-25922825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:2-234
               
               
               Cow position:chr5:54090244-54090015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):71, 31

               
               
               Conread position:2-239
               
               
               Cow position:chr5:17028306-17028069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 15

               
               
               Conread position:2-239
               
               
               Cow position:chr5:27102582-27102821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:2-239
               
               
               Cow position:chr5:36487483-36487720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):99, 191

               
               
               Conread position:3-135
               
               
               Cow position:chr5:13890680-13890545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:3-162
               
               
               Cow position:chr5:39753446-39753605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):124, 35

               
               
               Conread position:3-166
               
               
               Cow position:chr5:37272599-37272441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):124, 11

               
               
               Conread position:3-181
               
               
               Cow position:chr5:45559132-45558955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):82, 40

               
               
               Conread position:3-207
               
               
               Cow position:chr5:31660451-31660652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):121, 11

               
               
               Conread position:3-214
               
               
               Cow position:chr5:50425277-50425484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):121, 68

               
               
               Conread position:3-233
               
               
               Cow position:chr5:23366558-23366784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):121, 33

               
               
               Conread position:3-238
               
               
               Cow position:chr5:39695862-39695624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:3-239
               
               
               Cow position:chr5:24175581-24175343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):121, 97

               
               
               Conread position:3-239
               
               
               Cow position:chr5:34279403-34279625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):118, 17

               
               
               Conread position:4-160
               
               
               Cow position:chr5:5929669-5929511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:4-186
               
               
               Cow position:chr5:50860073-50859892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):117, 56

               
               
               Conread position:4-202
               
               
               Cow position:chr5:27411196-27411391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):120, 36

               
               
               Conread position:4-226
               
               
               Cow position:chr5:25899666-25899882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):121, 58

               
               
               Conread position:4-227
               
               
               Cow position:chr5:48573570-48573784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):11, 58

               
               
               Conread position:4-238
               
               
               Cow position:chr5:40387672-40387897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):101, 115

               
               
               Conread position:4-239
               
               
               Cow position:chr5:21194914-21195138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):120, 11

               
               
               Conread position:4-239
               
               
               Cow position:chr5:27615722-27615491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):120, 144

               
               
               Conread position:4-239
               
               
               Cow position:chr5:39442506-39442270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):121, 86

               
               
               Conread position:4-239
               
               
               Cow position:chr5:49946114-49945887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:4-239
               
               
               Cow position:chr5:58748976-58748744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):121, 11

               
               
               Conread position:5-176
               
               
               Cow position:chr5:72363804-72363979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:5-183
               
               
               Cow position:chr5:34441573-34441751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):112, 9

               
               
               Conread position:5-183
               
               
               Cow position:chr5:67149809-67149984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):119, 150

               
               
               Conread position:5-208
               
               
               Cow position:chr5:1349584-1349788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):15, 39

               
               
               Conread position:5-218
               
               
               Cow position:chr5:47680809-47681023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):45, 9

               
               
               Conread position:5-223
               
               
               Cow position:chr5:42782520-42782737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):117, 34

               
               
               Conread position:5-232
               
               
               Cow position:chr5:29844489-29844264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):119, 207

               
               
               Conread position:5-239
               
               
               Cow position:chr5:14154351-14154126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):120, 36

               
               
               Conread position:5-239
               
               
               Cow position:chr5:28945852-28946086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):119, 21

               
               
               Conread position:5-239
               
               
               Cow position:chr5:38629495-38629263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):119, 150

               
               
               Conread position:5-239
               
               
               Cow position:chr5:41604832-41604601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 150

               
               
               Conread position:5-239
               
               
               Cow position:chr5:45396204-45396435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):120, 97

               
               
               Conread position:5-239
               
               
               Cow position:chr5:59303083-59303305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):119, 44

               
               
               Conread position:6-189
               
               
               Cow position:chr5:53145540-53145729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:6-237
               
               
               Cow position:chr5:64399211-64398991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):118, 24

               
               
               Conread position:9-184
               
               
               Cow position:chr5:62639109-62638932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:9-218
               
               
               Cow position:chr5:15837690-15837895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):116, 124

               
               
               Conread position:9-239
               
               
               Cow position:chr5:68081776-68082001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):134, 29

               
               
               Conread position:11-208
               
               
               Cow position:chr5:46798445-46798248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):113, 84

               
               
               Conread position:11-226
               
               
               Cow position:chr5:23529080-23529294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):106, 84

               
               
               Conread position:11-227
               
               
               Cow position:chr5:3649261-3649472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):99, 32

               
               
               Conread position:11-238
               
               
               Cow position:chr5:41598509-41598739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:11-239
               
               
               Cow position:chr5:40711244-40711461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):113, 79

               
               
               Conread position:13-228
               
               
               Cow position:chr5:39875325-39875108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):93, 116

               
               
               Conread position:14-189
               
               
               Cow position:chr5:18276677-18276505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):110, 59

               
               
               Conread position:14-215
               
               
               Cow position:chr5:63328700-63328894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):111, 26

               
               
               Conread position:14-216
               
               
               Cow position:chr5:71454412-71454616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):109, 196

               
               
               Conread position:14-239
               
               
               Cow position:chr5:37069081-37068866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):110, 56

               
               
               Conread position:15-239
               
               
               Cow position:chr5:1949859-1950087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):109, 83

               
               
               Conread position:16-239
               
               
               Cow position:chr5:63188133-63188349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):112, 27

               
               
               Conread position:18-239
               
               
               Cow position:chr5:4927362-4927590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):17, 78

               
               
               Conread position:19-208
               
               
               Cow position:chr5:56799078-56799263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):55, 18

               
               
               Conread position:19-219
               
               
               Cow position:chr5:3442638-3442446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):91, 24

               
               
               Conread position:19-229
               
               
               Cow position:chr5:30333145-30332938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):105, 136

               
               
               Conread position:19-239
               
               
               Cow position:chr5:1343662-1343878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):108, 52

               
               
               Conread position:19-239
               
               
               Cow position:chr5:58320276-58320494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):93, 76

               
               
               Conread position:20-181
               
               
               Cow position:chr5:70169516-70169667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):104, 39

               
               
               Conread position:20-217
               
               
               Cow position:chr5:51503197-51503004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):15, 25

               
               
               Conread position:20-239
               
               
               Cow position:chr5:40234305-40234097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):104, 74

               
               
               Conread position:23-237
               
               
               Cow position:chr5:17267703-17267916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):102, 20

               
               
               Conread position:25-239
               
               
               Cow position:chr5:41946036-41945824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):103, 56

               
               
               Conread position:26-194
               
               
               Cow position:chr5:42316727-42316890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:27-239
               
               
               Cow position:chr5:26594912-26595130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:31-189
               
               
               Cow position:chr5:61365719-61365555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):26, 155

               
               
               Conread position:34-239
               
               
               Cow position:chr5:18554072-18553872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:34-239
               
               
               Cow position:chr5:59449393-59449597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):71, 40

               
               
               Conread position:36-227
               
               
               Cow position:chr5:49655850-49656034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 59

               
               
               Conread position:39-239
               
               
               Cow position:chr5:30978527-30978331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):85, 5

               
               
               Conread position:40-186
               
               
               Cow position:chr5:7432985-7433133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):61, 110

               
               
               Conread position:40-225
               
               
               Cow position:chr5:34184398-34184212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):14, 164

               
               
               Conread position:44-238
               
               
               Cow position:chr5:3753020-3752833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):80, 16

               
               
               Conread position:59-239
               
               
               Cow position:chr5:38805187-38805372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 137

               
               
               Conread position:67-238
               
               
               Cow position:chr5:6895980-6896149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):61, 86

               
               
               Conread position:67-239
               
               
               Cow position:chr5:1687968-1688137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):57, 86

               
               
               Conread position:74-239
               
               
               Cow position:chr5:7552273-7552442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):17, 145

               
               
               Conread position:75-239
               
               
               Cow position:chr5:17869824-17869666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):49, 32

               
               
               Conread position:75-239
               
               
               Cow position:chr5:31561674-31561510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 32

               
               
               Conread position:86-237
               
               
               Cow position:chr5:21534983-21535136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:1-159
               
               
               Cow position:chr6:28278898-28278744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):123, 39

               
               
               Conread position:1-162
               
               
               Cow position:chr6:22863041-22863196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1-172
               
               
               Cow position:chr6:62379924-62379759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):109, 13

               
               
               Conread position:1-174
               
               
               Cow position:chr6:25224465-25224291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):119, 14

               
               
               Conread position:1-176
               
               
               Cow position:chr6:17232230-17232397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):123, 16

               
               
               Conread position:1-186
               
               
               Cow position:chr6:49800492-49800307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):32, 16

               
               
               Conread position:1-188
               
               
               Cow position:chr6:28069464-28069265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:1-189
               
               
               Cow position:chr6:11790202-11790011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):101, 90

               
               
               Conread position:1-200
               
               
               Cow position:chr6:41687796-41687996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):79, 37

               
               
               Conread position:1-208
               
               
               Cow position:chr6:28477394-28477187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):119, 65

               
               
               Conread position:1-208
               
               
               Cow position:chr6:36454368-36454578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:1-208
               
               
               Cow position:chr6:53939189-53938982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):123, 13

               
               
               Conread position:1-215
               
               
               Cow position:chr6:59496439-59496230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):195, 17

               
               
               Conread position:1-219
               
               
               Cow position:chr6:2323998-2324214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):123, 59

               
               
               Conread position:1-224
               
               
               Cow position:chr6:68629353-68629583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):49, 14

               
               
               Conread position:1-225
               
               
               Cow position:chr6:20196081-20196299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):121, 71

               
               
               Conread position:1-226
               
               
               Cow position:chr6:6161823-6161602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):124, 39

               
               
               Conread position:1-227
               
               
               Cow position:chr6:46676205-46676428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):128, 35

               
               
               Conread position:1-228
               
               
               Cow position:chr6:4023328-4023103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):123, 181

               
               
               Conread position:1-228
               
               
               Cow position:chr6:35774757-35774981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:1-232
               
               
               Cow position:chr6:17736860-17736638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:1-234
               
               
               Cow position:chr6:28083787-28084022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):94, 13

               
               
               Conread position:1-237
               
               
               Cow position:chr6:50034508-50034737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):124, 36

               
               
               Conread position:1-239
               
               
               Cow position:chr6:827481-827714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):120, 152

               
               
               Conread position:1-239
               
               
               Cow position:chr6:3078722-3078502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):124, 37

               
               
               Conread position:1-239
               
               
               Cow position:chr6:6367447-6367679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):124, 57

               
               
               Conread position:1-239
               
               
               Cow position:chr6:6943460-6943692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):124, 38

               
               
               Conread position:1-239
               
               
               Cow position:chr6:6994733-6994964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):107, 16

               
               
               Conread position:1-239
               
               
               Cow position:chr6:7836128-7835906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):123, 39

               
               
               Conread position:1-239
               
               
               Cow position:chr6:15996994-15997226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):124, 44

               
               
               Conread position:1-239
               
               
               Cow position:chr6:17090824-17090589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 14

               
               
               Conread position:1-239
               
               
               Cow position:chr6:24545840-24545601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-239
               
               
               Cow position:chr6:33917612-33917852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):121, 234

               
               
               Conread position:1-239
               
               
               Cow position:chr6:37463250-37463008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:1-239
               
               
               Cow position:chr6:47026703-47026468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):121, 19

               
               
               Conread position:1-239
               
               
               Cow position:chr6:54144533-54144296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):11, 158

               
               
               Conread position:2-181
               
               
               Cow position:chr6:23986240-23986416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):122, 38

               
               
               Conread position:2-187
               
               
               Cow position:chr6:37612331-37612146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):122, 167

               
               
               Conread position:2-189
               
               
               Cow position:chr6:66057998-66057809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 153

               
               
               Conread position:2-201
               
               
               Cow position:chr6:37054209-37054015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):122, 73

               
               
               Conread position:2-212
               
               
               Cow position:chr6:20754077-20754287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):122, 15

               
               
               Conread position:2-217
               
               
               Cow position:chr6:28810781-28810993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):122, 12

               
               
               Conread position:2-227
               
               
               Cow position:chr6:13718990-13718764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):42, 223

               
               
               Conread position:2-229
               
               
               Cow position:chr6:30160543-30160323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:2-233
               
               
               Cow position:chr6:55475481-55475249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):122, 214

               
               
               Conread position:2-237
               
               
               Cow position:chr6:30701667-30701435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):122, 168

               
               
               Conread position:2-239
               
               
               Cow position:chr6:24583009-24583234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):194, 21

               
               
               Conread position:2-239
               
               
               Cow position:chr6:41655811-41656054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):69, 230

               
               
               Conread position:2-239
               
               
               Cow position:chr6:45064791-45065026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):122, 203

               
               
               Conread position:2-239
               
               
               Cow position:chr6:51840511-51840266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:2-239
               
               
               Cow position:chr6:54490502-54490745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):70, 149

               
               
               Conread position:3-183
               
               
               Cow position:chr6:3117905-3118077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:3-186
               
               
               Cow position:chr6:38594017-38594196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):124, 12

               
               
               Conread position:3-208
               
               
               Cow position:chr6:14658824-14658620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):114, 47

               
               
               Conread position:3-214
               
               
               Cow position:chr6:20255182-20255392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):102, 190

               
               
               Conread position:3-216
               
               
               Cow position:chr6:48806789-48806995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):118, 37

               
               
               Conread position:3-228
               
               
               Cow position:chr6:16626168-16625940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):72, 12

               
               
               Conread position:3-228
               
               
               Cow position:chr6:28795558-28795338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:3-237
               
               
               Cow position:chr6:12652423-12652197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:3-237
               
               
               Cow position:chr6:38018481-38018252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):121, 78

               
               
               Conread position:3-238
               
               
               Cow position:chr6:40428-40661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):125, 11

               
               
               Conread position:3-239
               
               
               Cow position:chr6:6596790-6596567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):124, 37

               
               
               Conread position:3-239
               
               
               Cow position:chr6:8317945-8318173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:3-239
               
               
               Cow position:chr6:19427670-19427444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):124, 38

               
               
               Conread position:3-239
               
               
               Cow position:chr6:31425335-31425572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):110, 37

               
               
               Conread position:3-239
               
               
               Cow position:chr6:36194817-36194584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):122, 35

               
               
               Conread position:3-239
               
               
               Cow position:chr6:47616396-47616618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):8, 89

               
               
               Conread position:4-132
               
               
               Cow position:chr6:28550979-28550853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:4-186
               
               
               Cow position:chr6:15943778-15943961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):94, 16

               
               
               Conread position:4-195
               
               
               Cow position:chr6:47192302-47192493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):120, 84

               
               
               Conread position:4-199
               
               
               Cow position:chr6:24004763-24004563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:4-217
               
               
               Cow position:chr6:55892977-55892777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:4-226
               
               
               Cow position:chr6:32412418-32412632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:4-227
               
               
               Cow position:chr6:9026737-9026522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):121, 39

               
               
               Conread position:4-227
               
               
               Cow position:chr6:54478927-54479150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 198

               
               
               Conread position:5-158
               
               
               Cow position:chr6:31225930-31225775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):100, 104

               
               
               Conread position:5-185
               
               
               Cow position:chr6:28165047-28164866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:5-227
               
               
               Cow position:chr6:17534297-17534514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:5-238
               
               
               Cow position:chr6:24622757-24622984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):123, 9

               
               
               Conread position:5-239
               
               
               Cow position:chr6:36652639-36652409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):119, 10

               
               
               Conread position:5-239
               
               
               Cow position:chr6:43760575-43760358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):119, 9

               
               
               Conread position:6-234
               
               
               Cow position:chr6:53674082-53673856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):119, 30

               
               
               Conread position:6-237
               
               
               Cow position:chr6:56376131-56376359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:175
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):121, 33

               
               
               Conread position:6-239
               
               
               Cow position:chr6:4163949-4164178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):66, 89

               
               
               Conread position:6-239
               
               
               Cow position:chr6:24222937-24223167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):118, 149

               
               
               Conread position:6-239
               
               
               Cow position:chr6:63196941-63197175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):116, 226

               
               
               Conread position:9-239
               
               
               Cow position:chr6:2899347-2899583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:9-239
               
               
               Cow position:chr6:38453563-38453783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):45, 34

               
               
               Conread position:10-239
               
               
               Cow position:chr6:58332099-58331877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):118, 30

               
               
               Conread position:11-230
               
               
               Cow position:chr6:38914657-38914439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):114, 142

               
               
               Conread position:11-232
               
               
               Cow position:chr6:64427442-64427217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:11-239
               
               
               Cow position:chr6:34235197-34235424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 158

               
               
               Conread position:14-225
               
               
               Cow position:chr6:510091-510301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):116, 65

               
               
               Conread position:14-238
               
               
               Cow position:chr6:24558091-24557873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):111, 67

               
               
               Conread position:15-239
               
               
               Cow position:chr6:34549607-34549389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:15-239
               
               
               Cow position:chr6:48572670-48572893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):113, 23

               
               
               Conread position:17-151
               
               
               Cow position:chr6:1907730-1907595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:19-162
               
               
               Cow position:chr6:36892125-36892266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):105, 87

               
               
               Conread position:19-184
               
               
               Cow position:chr6:7707342-7707176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):56, 139

               
               
               Conread position:19-221
               
               
               Cow position:chr6:60503582-60503387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):106, 20

               
               
               Conread position:19-230
               
               
               Cow position:chr6:65872095-65871888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):85, 24

               
               
               Conread position:19-238
               
               
               Cow position:chr6:32277150-32276934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):105, 21

               
               
               Conread position:19-239
               
               
               Cow position:chr6:42618084-42617873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):106, 41

               
               
               Conread position:20-159
               
               
               Cow position:chr6:10400208-10400346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):104, 72

               
               
               Conread position:22-233
               
               
               Cow position:chr6:1890372-1890582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):60, 137

               
               
               Conread position:22-239
               
               
               Cow position:chr6:51294491-51294273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):109, 200

               
               
               Conread position:23-204
               
               
               Cow position:chr6:15782310-15782492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:23-212
               
               
               Cow position:chr6:12421085-12421276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):101, 171

               
               
               Conread position:23-223
               
               
               Cow position:chr6:18469028-18469220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):22, 62

               
               
               Conread position:23-239
               
               
               Cow position:chr6:32798671-32798883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):101, 15

               
               
               Conread position:23-239
               
               
               Cow position:chr6:54062867-54062652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:29-232
               
               
               Cow position:chr6:16733613-16733411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):179, 125

               
               
               Conread position:30-239
               
               
               Cow position:chr6:59588211-59588416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):80, 56

               
               
               Conread position:33-194
               
               
               Cow position:chr6:29649300-29649139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):91, 150

               
               
               Conread position:40-228
               
               
               Cow position:chr6:7173566-7173751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):85, 39

               
               
               Conread position:43-216
               
               
               Cow position:chr6:57118758-57118931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):24, 32

               
               
               Conread position:44-209
               
               
               Cow position:chr6:29412605-29412768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 65

               
               
               Conread position:60-239
               
               
               Cow position:chr6:33929378-33929560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):6, 159

               
               
               Conread position:62-220
               
               
               Cow position:chr6:2583025-2582866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:65-229
               
               
               Cow position:chr6:51387912-51387747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 147

               
               
               Conread position:74-239
               
               
               Cow position:chr6:42567008-42566844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 24

               
               
               Conread position:76-230
               
               
               Cow position:chr6:29754676-29754831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:99-239
               
               
               Cow position:chr6:11789518-11789377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):10, 94

               
               
               Conread position:107-239
               
               
               Cow position:chr6:35415395-35415528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:1-147
               
               
               Cow position:chr7:5221078-5220932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):79, 118

               
               
               Conread position:1-154
               
               
               Cow position:chr7:62471020-62470868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):126, 70

               
               
               Conread position:1-175
               
               
               Cow position:chr7:35504770-35504600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):122, 70

               
               
               Conread position:1-175
               
               
               Cow position:chr7:40261723-40261890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):121, 32

               
               
               Conread position:1-185
               
               
               Cow position:chr7:45748811-45748993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:151
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):116, 94

               
               
               Conread position:1-186
               
               
               Cow position:chr7:24521478-24521297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-205
               
               
               Cow position:chr7:37445093-37444888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):127, 94

               
               
               Conread position:1-215
               
               
               Cow position:chr7:43234216-43234432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-215
               
               
               Cow position:chr7:51086384-51086166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):119, 13

               
               
               Conread position:1-218
               
               
               Cow position:chr7:53005573-53005363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):123, 16

               
               
               Conread position:1-227
               
               
               Cow position:chr7:24667613-24667387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):123, 215

               
               
               Conread position:1-227
               
               
               Cow position:chr7:24869419-24869645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 71

               
               
               Conread position:1-228
               
               
               Cow position:chr7:59246179-59245956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):123, 39

               
               
               Conread position:1-230
               
               
               Cow position:chr7:44049149-44049372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):121, 67

               
               
               Conread position:1-231
               
               
               Cow position:chr7:20918116-20918352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):71, 226

               
               
               Conread position:1-233
               
               
               Cow position:chr7:60961223-60961004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1-237
               
               
               Cow position:chr7:25104598-25104360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):72, 36

               
               
               Conread position:1-237
               
               
               Cow position:chr7:40192978-40192741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:1-238
               
               
               Cow position:chr7:51321960-51321730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):124, 98

               
               
               Conread position:1-239
               
               
               Cow position:chr7:19399453-19399687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 39

               
               
               Conread position:1-239
               
               
               Cow position:chr7:26907812-26908041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):206, 63

               
               
               Conread position:1-239
               
               
               Cow position:chr7:41728170-41727943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1-239
               
               
               Cow position:chr7:41913473-41913706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):121, 31

               
               
               Conread position:1-239
               
               
               Cow position:chr7:46103749-46103516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:1-239
               
               
               Cow position:chr7:47172483-47172716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):39, 13

               
               
               Conread position:1-239
               
               
               Cow position:chr7:62102818-62102587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):124, 53

               
               
               Conread position:2-179
               
               
               Cow position:chr7:59713943-59713767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):122, 16

               
               
               Conread position:2-201
               
               
               Cow position:chr7:62610519-62610318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:2-208
               
               
               Cow position:chr7:69066925-69066716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):70, 146

               
               
               Conread position:2-217
               
               
               Cow position:chr7:18858565-18858348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):37, 100

               
               
               Conread position:2-222
               
               
               Cow position:chr7:25684822-25685034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:2-224
               
               
               Cow position:chr7:12754928-12755147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):122, 151

               
               
               Conread position:2-225
               
               
               Cow position:chr7:57577076-57577304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):47, 12

               
               
               Conread position:2-227
               
               
               Cow position:chr7:57537292-57537522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:2-228
               
               
               Cow position:chr7:23057287-23057513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):103, 156

               
               
               Conread position:2-228
               
               
               Cow position:chr7:47874762-47874982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):123, 41

               
               
               Conread position:2-232
               
               
               Cow position:chr7:48289594-48289369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):120, 66

               
               
               Conread position:2-234
               
               
               Cow position:chr7:53743673-53743902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):127, 153

               
               
               Conread position:2-237
               
               
               Cow position:chr7:4512592-4512820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:2-237
               
               
               Cow position:chr7:23256636-23256863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):123, 33

               
               
               Conread position:2-238
               
               
               Cow position:chr7:68522617-68522852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:2-239
               
               
               Cow position:chr7:1732976-1733204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):119, 93

               
               
               Conread position:2-239
               
               
               Cow position:chr7:12424774-12424535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:2-239
               
               
               Cow position:chr7:36746550-36746320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):122, 41

               
               
               Conread position:2-239
               
               
               Cow position:chr7:43215741-43215500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):76, 151

               
               
               Conread position:3-140
               
               
               Cow position:chr7:40140287-40140150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):121, 96

               
               
               Conread position:3-184
               
               
               Cow position:chr7:10345241-10345419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):121, 157

               
               
               Conread position:3-186
               
               
               Cow position:chr7:50255860-50255684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):102, 11

               
               
               Conread position:3-201
               
               
               Cow position:chr7:36830878-36830682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):137, 125

               
               
               Conread position:3-217
               
               
               Cow position:chr7:39603549-39603338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):31, 153

               
               
               Conread position:3-218
               
               
               Cow position:chr7:34214818-34214601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 103

               
               
               Conread position:3-218
               
               
               Cow position:chr7:55714299-55714081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):20, 101

               
               
               Conread position:3-218
               
               
               Cow position:chr7:61087649-61087435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):98, 52

               
               
               Conread position:3-228
               
               
               Cow position:chr7:19880819-19881042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):121, 166

               
               
               Conread position:3-229
               
               
               Cow position:chr7:20537600-20537364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:3-229
               
               
               Cow position:chr7:30404351-30404569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):121, 40

               
               
               Conread position:3-237
               
               
               Cow position:chr7:26195581-26195808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):122, 40

               
               
               Conread position:3-239
               
               
               Cow position:chr7:21197160-21197389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):118, 26

               
               
               Conread position:3-239
               
               
               Cow position:chr7:27387750-27387986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):124, 60

               
               
               Conread position:4-189
               
               
               Cow position:chr7:20634-20448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):120, 67

               
               
               Conread position:4-221
               
               
               Cow position:chr7:25914265-25914478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):68, 38

               
               
               Conread position:4-228
               
               
               Cow position:chr7:37906133-37906357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):37, 89

               
               
               Conread position:4-239
               
               
               Cow position:chr7:23131819-23131590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:4-239
               
               
               Cow position:chr7:68088849-68088621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:5-155
               
               
               Cow position:chr7:66206814-66206663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):115, 103

               
               
               Conread position:5-177
               
               
               Cow position:chr7:9054222-9054046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:5-225
               
               
               Cow position:chr7:65461057-65460845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):123, 78

               
               
               Conread position:5-229
               
               
               Cow position:chr7:24767016-24767229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:5-237
               
               
               Cow position:chr7:45956150-45955921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):19, 36

               
               
               Conread position:6-229
               
               
               Cow position:chr7:56081811-56081595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):118, 26

               
               
               Conread position:7-227
               
               
               Cow position:chr7:19948434-19948648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):121, 7

               
               
               Conread position:7-238
               
               
               Cow position:chr7:66266364-66266594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):113, 45

               
               
               Conread position:11-228
               
               
               Cow position:chr7:64139927-64140136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):113, 58

               
               
               Conread position:11-239
               
               
               Cow position:chr7:53985784-53986002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):211, 87

               
               
               Conread position:13-165
               
               
               Cow position:chr7:48443335-48443487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):111, 137

               
               
               Conread position:14-208
               
               
               Cow position:chr7:13587396-13587202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):72, 86

               
               
               Conread position:14-239
               
               
               Cow position:chr7:10099145-10099369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):57, 141

               
               
               Conread position:15-239
               
               
               Cow position:chr7:11872382-11872614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):5, 208

               
               
               Conread position:16-218
               
               
               Cow position:chr7:12233239-12233029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:17-239
               
               
               Cow position:chr7:51633110-51632895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):87, 44

               
               
               Conread position:19-205
               
               
               Cow position:chr7:25014921-25015097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:19-205
               
               
               Cow position:chr7:25023259-25023435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:19-208
               
               
               Cow position:chr7:67761599-67761415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):105, 45

               
               
               Conread position:19-225
               
               
               Cow position:chr7:14044178-14043979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):105, 21

               
               
               Conread position:19-238
               
               
               Cow position:chr7:8073891-8074109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):103, 24

               
               
               Conread position:19-238
               
               
               Cow position:chr7:67839553-67839334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):95, 115

               
               
               Conread position:19-239
               
               
               Cow position:chr7:26466952-26466737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:20-227
               
               
               Cow position:chr7:32277746-32277543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):101, 128

               
               
               Conread position:20-239
               
               
               Cow position:chr7:20108783-20108999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):17, 136

               
               
               Conread position:20-239
               
               
               Cow position:chr7:33772827-33772608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):16, 28

               
               
               Conread position:21-186
               
               
               Cow position:chr7:31224200-31224369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:21-234
               
               
               Cow position:chr7:48547655-48547865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):104, 32

               
               
               Conread position:23-239
               
               
               Cow position:chr7:48012766-48012552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):97, 48

               
               
               Conread position:23-239
               
               
               Cow position:chr7:48648416-48648631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):20, 53

               
               
               Conread position:24-239
               
               
               Cow position:chr7:25445601-25445387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 60

               
               
               Conread position:26-200
               
               
               Cow position:chr7:664051-664224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):98, 131

               
               
               Conread position:30-233
               
               
               Cow position:chr7:3748728-3748930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):94, 120

               
               
               Conread position:31-215
               
               
               Cow position:chr7:17922477-17922296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:32-237
               
               
               Cow position:chr7:57260053-57260252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):92, 66

               
               
               Conread position:33-228
               
               
               Cow position:chr7:22981534-22981339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:33-238
               
               
               Cow position:chr7:8786387-8786592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):189, 96

               
               
               Conread position:34-205
               
               
               Cow position:chr7:67111717-67111889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):86, 150

               
               
               Conread position:36-218
               
               
               Cow position:chr7:57311810-57311628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):91, 172

               
               
               Conread position:36-231
               
               
               Cow position:chr7:21545174-21545365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):89, 59

               
               
               Conread position:37-237
               
               
               Cow position:chr7:1350164-1350363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):68, 54

               
               
               Conread position:49-237
               
               
               Cow position:chr7:34441007-34441191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 64

               
               
               Conread position:74-239
               
               
               Cow position:chr7:12413156-12413319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):40, 28

               
               
               Conread position:84-238
               
               
               Cow position:chr7:51917740-51917893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):18, 7

               
               
               Conread position:88-239
               
               
               Cow position:chr7:67653864-67653712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:108-239
               
               
               Cow position:chr7:7313860-7313727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-99
               
               
               Cow position:chr8:30136352-30136254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:82
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-99
               
               
               Cow position:chr8:60608045-60608143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:81
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-163
               
               
               Cow position:chr8:36274134-36274298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):100, 107

               
               
               Conread position:1-186
               
               
               Cow position:chr8:23030827-23030647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:1-192
               
               
               Cow position:chr8:49510697-49510888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):22, 70

               
               
               Conread position:1-194
               
               
               Cow position:chr8:56033675-56033868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):126, 14

               
               
               Conread position:1-202
               
               
               Cow position:chr8:15969369-15969564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:1-204
               
               
               Cow position:chr8:46834366-46834568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):104, 37

               
               
               Conread position:1-209
               
               
               Cow position:chr8:17063894-17064095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):123, 13

               
               
               Conread position:1-215
               
               
               Cow position:chr8:15686204-15686421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:1-225
               
               
               Cow position:chr8:9130730-9130955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):112, 104

               
               
               Conread position:1-225
               
               
               Cow position:chr8:9811997-9811773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):123, 16

               
               
               Conread position:1-228
               
               
               Cow position:chr8:36505572-36505349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):123, 83

               
               
               Conread position:1-234
               
               
               Cow position:chr8:29414085-29413855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 39

               
               
               Conread position:1-237
               
               
               Cow position:chr8:41318235-41318001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):14, 156

               
               
               Conread position:1-239
               
               
               Cow position:chr8:3182655-3182422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 169

               
               
               Conread position:1-239
               
               
               Cow position:chr8:6468971-6469205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 12

               
               
               Conread position:1-239
               
               
               Cow position:chr8:19171422-19171662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):124, 39

               
               
               Conread position:1-239
               
               
               Cow position:chr8:23161147-23160909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):123, 219

               
               
               Conread position:1-239
               
               
               Cow position:chr8:27294924-27294687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:1-239
               
               
               Cow position:chr8:28221371-28221603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):128, 42

               
               
               Conread position:1-239
               
               
               Cow position:chr8:33218753-33218996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):11, 41

               
               
               Conread position:2-186
               
               
               Cow position:chr8:36471736-36471556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):122, 97

               
               
               Conread position:2-186
               
               
               Cow position:chr8:45163218-45163035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):123, 33

               
               
               Conread position:2-188
               
               
               Cow position:chr8:31645825-31646012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:2-203
               
               
               Cow position:chr8:30935127-30934909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):63, 13

               
               
               Conread position:2-209
               
               
               Cow position:chr8:52864004-52863807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):122, 36

               
               
               Conread position:2-216
               
               
               Cow position:chr8:46640146-46640349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):122, 36

               
               
               Conread position:2-224
               
               
               Cow position:chr8:46850164-46850392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:2-226
               
               
               Cow position:chr8:34288117-34287898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):122, 91

               
               
               Conread position:2-229
               
               
               Cow position:chr8:20832121-20832357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:2-238
               
               
               Cow position:chr8:20052723-20052959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):81, 107

               
               
               Conread position:2-239
               
               
               Cow position:chr8:20657166-20657402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):122, 13

               
               
               Conread position:2-239
               
               
               Cow position:chr8:26229143-26228914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):126, 38

               
               
               Conread position:3-126
               
               
               Cow position:chr8:35924471-35924593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:3-176
               
               
               Cow position:chr8:13738706-13738534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):113, 120

               
               
               Conread position:3-200
               
               
               Cow position:chr8:42846517-42846710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:3-221
               
               
               Cow position:chr8:48763731-48763528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):122, 33

               
               
               Conread position:3-227
               
               
               Cow position:chr8:37123161-37122935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:3-228
               
               
               Cow position:chr8:54070938-54070722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:3-230
               
               
               Cow position:chr8:20682592-20682365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):98, 11

               
               
               Conread position:3-237
               
               
               Cow position:chr8:11510168-11510396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):125, 48

               
               
               Conread position:3-237
               
               
               Cow position:chr8:33842942-33842716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):122, 46

               
               
               Conread position:3-237
               
               
               Cow position:chr8:51695189-51695422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):119, 159

               
               
               Conread position:3-238
               
               
               Cow position:chr8:55305277-55305041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):117, 196

               
               
               Conread position:3-239
               
               
               Cow position:chr8:1106997-1107231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):125, 37

               
               
               Conread position:3-239
               
               
               Cow position:chr8:9583349-9583584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):124, 36

               
               
               Conread position:3-239
               
               
               Cow position:chr8:53866296-53866069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):69, 141

               
               
               Conread position:4-132
               
               
               Cow position:chr8:25417308-25417435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):120, 66

               
               
               Conread position:4-196
               
               
               Cow position:chr8:29004060-29004259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):68, 112

               
               
               Conread position:4-200
               
               
               Cow position:chr8:37114720-37114909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:4-201
               
               
               Cow position:chr8:11594232-11594033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:4-208
               
               
               Cow position:chr8:43803746-43803540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):39, 195

               
               
               Conread position:4-217
               
               
               Cow position:chr8:21282251-21282038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):120, 103

               
               
               Conread position:4-217
               
               
               Cow position:chr8:39967615-39967820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):21, 40

               
               
               Conread position:4-228
               
               
               Cow position:chr8:8134306-8134531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:177
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):19, 103

               
               
               Conread position:4-228
               
               
               Cow position:chr8:21137088-21137296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:4-237
               
               
               Cow position:chr8:19512284-19512501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):203, 43

               
               
               Conread position:4-238
               
               
               Cow position:chr8:32277834-32278059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):123, 40

               
               
               Conread position:4-238
               
               
               Cow position:chr8:37487103-37487338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:4-239
               
               
               Cow position:chr8:31691000-31690767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):11, 71

               
               
               Conread position:4-239
               
               
               Cow position:chr8:39017899-39017662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:4-239
               
               
               Cow position:chr8:49265109-49265345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 11

               
               
               Conread position:4-239
               
               
               Cow position:chr8:51904844-51905082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):117, 79

               
               
               Conread position:5-170
               
               
               Cow position:chr8:24766776-24766936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:5-176
               
               
               Cow position:chr8:60949550-60949722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):119, 10

               
               
               Conread position:5-185
               
               
               Cow position:chr8:13900593-13900414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):81, 150

               
               
               Conread position:5-200
               
               
               Cow position:chr8:11896392-11896201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):123, 29

               
               
               Conread position:5-200
               
               
               Cow position:chr8:32079491-32079681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):126, 38

               
               
               Conread position:5-213
               
               
               Cow position:chr8:53360038-53360255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:5-221
               
               
               Cow position:chr8:20892521-20892310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):120, 29

               
               
               Conread position:5-226
               
               
               Cow position:chr8:35218559-35218342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):119, 203

               
               
               Conread position:5-230
               
               
               Cow position:chr8:9962401-9962627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):33, 97

               
               
               Conread position:5-239
               
               
               Cow position:chr8:46203459-46203228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):119, 138

               
               
               Conread position:6-162
               
               
               Cow position:chr8:47708042-47707887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:6-238
               
               
               Cow position:chr8:11249289-11249515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 9

               
               
               Conread position:6-239
               
               
               Cow position:chr8:29936110-29935875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):153, 119

               
               
               Conread position:6-239
               
               
               Cow position:chr8:32827488-32827715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):122, 34

               
               
               Conread position:7-239
               
               
               Cow position:chr8:15536806-15537039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):115, 179

               
               
               Conread position:9-239
               
               
               Cow position:chr8:55829159-55829388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:11-180
               
               
               Cow position:chr8:49577114-49576950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):113, 69

               
               
               Conread position:11-239
               
               
               Cow position:chr8:25075780-25075556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):111, 82

               
               
               Conread position:14-173
               
               
               Cow position:chr8:18743677-18743520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):110, 80

               
               
               Conread position:15-177
               
               
               Cow position:chr8:61216651-61216815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:15-217
               
               
               Cow position:chr8:42575876-42575668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):29, 86

               
               
               Conread position:15-225
               
               
               Cow position:chr8:44568993-44568773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:15-232
               
               
               Cow position:chr8:13221672-13221886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):104, 25

               
               
               Conread position:16-164
               
               
               Cow position:chr8:33288182-33288027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:16-238
               
               
               Cow position:chr8:17078004-17077785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):109, 197

               
               
               Conread position:18-239
               
               
               Cow position:chr8:31814863-31815085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:19-208
               
               
               Cow position:chr8:24426833-24426644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:153
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):106, 79

               
               
               Conread position:19-228
               
               
               Cow position:chr8:15803471-15803669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):105, 54

               
               
               Conread position:19-228
               
               
               Cow position:chr8:26451303-26451093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):45, 129

               
               
               Conread position:19-228
               
               
               Cow position:chr8:43693387-43693183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):109, 41

               
               
               Conread position:19-237
               
               
               Cow position:chr8:13810381-13810165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 76

               
               
               Conread position:19-238
               
               
               Cow position:chr8:13976069-13975854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):110, 62

               
               
               Conread position:19-239
               
               
               Cow position:chr8:26922800-26922581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):106, 24

               
               
               Conread position:20-196
               
               
               Cow position:chr8:25573219-25573044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):18, 139

               
               
               Conread position:20-239
               
               
               Cow position:chr8:34317894-34318115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):15, 24

               
               
               Conread position:20-239
               
               
               Cow position:chr8:35520212-35519990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:20-239
               
               
               Cow position:chr8:58334719-58334507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):105, 40

               
               
               Conread position:23-239
               
               
               Cow position:chr8:18033745-18033964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):112, 206

               
               
               Conread position:28-221
               
               
               Cow position:chr8:33510449-33510644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):44, 177

               
               
               Conread position:29-239
               
               
               Cow position:chr8:7671508-7671313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:33-239
               
               
               Cow position:chr8:27053437-27053638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:33-239
               
               
               Cow position:chr8:60320682-60320480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:34-229
               
               
               Cow position:chr8:50266454-50266257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):85, 179

               
               
               Conread position:35-239
               
               
               Cow position:chr8:32983938-32984143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):75, 55

               
               
               Conread position:36-238
               
               
               Cow position:chr8:39985575-39985779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):56, 108

               
               
               Conread position:40-228
               
               
               Cow position:chr8:18367928-18368120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):87, 12

               
               
               Conread position:40-237
               
               
               Cow position:chr8:49599766-49599963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):84, 104

               
               
               Conread position:46-239
               
               
               Cow position:chr8:39969667-39969862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):36, 106

               
               
               Conread position:49-229
               
               
               Cow position:chr8:47483766-47483944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):158, 46

               
               
               Conread position:54-204
               
               
               Cow position:chr8:40371260-40371408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:55-215
               
               
               Cow position:chr8:5700137-5700296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):70, 26

               
               
               Conread position:55-239
               
               
               Cow position:chr8:45987656-45987839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):67, 26

               
               
               Conread position:69-237
               
               
               Cow position:chr8:44704220-44704050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:74-239
               
               
               Cow position:chr8:45486722-45486560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 96

               
               
               Conread position:102-238
               
               
               Cow position:chr8:24237848-24237711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:1-104
               
               
               Cow position:chr9:50296310-50296207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-111
               
               
               Cow position:chr9:20389355-20389245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):99, 86

               
               
               Conread position:1-177
               
               
               Cow position:chr9:50001558-50001733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:1-179
               
               
               Cow position:chr9:27052792-27052614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):104, 162

               
               
               Conread position:1-215
               
               
               Cow position:chr9:3958917-3959124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):104, 39

               
               
               Conread position:1-217
               
               
               Cow position:chr9:25468898-25469106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):208, 108

               
               
               Conread position:1-218
               
               
               Cow position:chr9:5575161-5575381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):139, 62

               
               
               Conread position:1-221
               
               
               Cow position:chr9:46252666-46252881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:1-223
               
               
               Cow position:chr9:32115757-32115536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):11, 83

               
               
               Conread position:1-225
               
               
               Cow position:chr9:5433469-5433700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:1-228
               
               
               Cow position:chr9:21463026-21462799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):21, 37

               
               
               Conread position:1-237
               
               
               Cow position:chr9:39152837-39152602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):116, 152

               
               
               Conread position:1-238
               
               
               Cow position:chr9:33668568-33668811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:1-238
               
               
               Cow position:chr9:43037325-43037563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 214

               
               
               Conread position:1-239
               
               
               Cow position:chr9:5340460-5340684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):124, 43

               
               
               Conread position:1-239
               
               
               Cow position:chr9:29808299-29808535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):71, 24

               
               
               Conread position:1-239
               
               
               Cow position:chr9:49651574-49651804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):124, 56

               
               
               Conread position:2-206
               
               
               Cow position:chr9:35708775-35708574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):122, 153

               
               
               Conread position:2-208
               
               
               Cow position:chr9:12498854-12499061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:159
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:2-220
               
               
               Cow position:chr9:17569208-17568992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):109, 31

               
               
               Conread position:2-229
               
               
               Cow position:chr9:5209427-5209651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):122, 41

               
               
               Conread position:2-235
               
               
               Cow position:chr9:3845356-3845133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):127, 36

               
               
               Conread position:2-237
               
               
               Cow position:chr9:42037496-42037732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 72

               
               
               Conread position:2-237
               
               
               Cow position:chr9:55562337-55562579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):13, 220

               
               
               Conread position:2-238
               
               
               Cow position:chr9:9315154-9315386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):104, 38

               
               
               Conread position:2-238
               
               
               Cow position:chr9:18237311-18237090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):120, 16

               
               
               Conread position:2-239
               
               
               Cow position:chr9:2887818-2888062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):98, 220

               
               
               Conread position:2-239
               
               
               Cow position:chr9:15006903-15006671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):123, 41

               
               
               Conread position:2-239
               
               
               Cow position:chr9:20200145-20200372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):126, 16

               
               
               Conread position:2-239
               
               
               Cow position:chr9:42173340-42173118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):122, 12

               
               
               Conread position:2-239
               
               
               Cow position:chr9:43911777-43912009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 77

               
               
               Conread position:3-148
               
               
               Cow position:chr9:42900746-42900888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):119, 37

               
               
               Conread position:3-170
               
               
               Cow position:chr9:34431665-34431833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):121, 71

               
               
               Conread position:3-176
               
               
               Cow position:chr9:41561428-41561254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:3-184
               
               
               Cow position:chr9:30019828-30020002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:3-185
               
               
               Cow position:chr9:36827545-36827723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):118, 40

               
               
               Conread position:3-194
               
               
               Cow position:chr9:9760889-9761075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:3-200
               
               
               Cow position:chr9:21537114-21537310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):121, 37

               
               
               Conread position:3-205
               
               
               Cow position:chr9:20839473-20839672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):122, 152

               
               
               Conread position:3-210
               
               
               Cow position:chr9:53794684-53794479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):12, 173

               
               
               Conread position:3-218
               
               
               Cow position:chr9:8599451-8599666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):121, 140

               
               
               Conread position:3-229
               
               
               Cow position:chr9:37099379-37099166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):122, 46

               
               
               Conread position:3-230
               
               
               Cow position:chr9:10667175-10666953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):192, 11

               
               
               Conread position:3-232
               
               
               Cow position:chr9:16745526-16745745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):126, 57

               
               
               Conread position:3-233
               
               
               Cow position:chr9:19382176-19382401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):56, 23

               
               
               Conread position:3-234
               
               
               Cow position:chr9:43926259-43926038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):122, 11

               
               
               Conread position:3-237
               
               
               Cow position:chr9:4539014-4538780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):124, 141

               
               
               Conread position:3-239
               
               
               Cow position:chr9:4861222-4861466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:3-239
               
               
               Cow position:chr9:20039284-20039055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):122, 68

               
               
               Conread position:4-128
               
               
               Cow position:chr9:43944647-43944524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:4-137
               
               
               Cow position:chr9:7655304-7655169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:4-227
               
               
               Cow position:chr9:28983027-28983253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):16, 146

               
               
               Conread position:4-228
               
               
               Cow position:chr9:34203975-34204199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 210

               
               
               Conread position:4-228
               
               
               Cow position:chr9:58699282-58699049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):94, 163

               
               
               Conread position:4-239
               
               
               Cow position:chr9:5398981-5399216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):120, 66

               
               
               Conread position:4-239
               
               
               Cow position:chr9:23042627-23042855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):118, 11

               
               
               Conread position:4-239
               
               
               Cow position:chr9:40007709-40007937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):124, 11

               
               
               Conread position:4-239
               
               
               Cow position:chr9:54437105-54437344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):21, 86

               
               
               Conread position:4-239
               
               
               Cow position:chr9:56860863-56861086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:5-140
               
               
               Cow position:chr9:21566763-21566628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):124, 10

               
               
               Conread position:5-167
               
               
               Cow position:chr9:62331151-62330988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:5-183
               
               
               Cow position:chr9:32266539-32266362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):123, 57

               
               
               Conread position:5-204
               
               
               Cow position:chr9:26645767-26645973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):72, 102

               
               
               Conread position:5-205
               
               
               Cow position:chr9:26559767-26559564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:5-214
               
               
               Cow position:chr9:10676527-10676318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):119, 137

               
               
               Conread position:5-218
               
               
               Cow position:chr9:49847044-49847267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:5-220
               
               
               Cow position:chr9:33059425-33059213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):119, 150

               
               
               Conread position:5-224
               
               
               Cow position:chr9:28947714-28947924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):119, 65

               
               
               Conread position:5-233
               
               
               Cow position:chr9:34309875-34310099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):119, 148

               
               
               Conread position:5-238
               
               
               Cow position:chr9:18111014-18110789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:5-239
               
               
               Cow position:chr9:8950743-8950985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):100, 29

               
               
               Conread position:5-239
               
               
               Cow position:chr9:17110620-17110850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):119, 150

               
               
               Conread position:5-239
               
               
               Cow position:chr9:50522488-50522271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):119, 9

               
               
               Conread position:6-216
               
               
               Cow position:chr9:8657583-8657372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:6-218
               
               
               Cow position:chr9:8617678-8617874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):119, 46

               
               
               Conread position:6-237
               
               
               Cow position:chr9:50544788-50544551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):121, 60

               
               
               Conread position:6-238
               
               
               Cow position:chr9:63597685-63597911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:6-239
               
               
               Cow position:chr9:39428952-39428718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:9-235
               
               
               Cow position:chr9:24837392-24837613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):115, 31

               
               
               Conread position:11-223
               
               
               Cow position:chr9:3169665-3169460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):117, 29

               
               
               Conread position:12-239
               
               
               Cow position:chr9:15033763-15033984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):112, 11

               
               
               Conread position:14-225
               
               
               Cow position:chr9:15684931-15684720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):121, 99

               
               
               Conread position:14-228
               
               
               Cow position:chr9:9823644-9823438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:14-232
               
               
               Cow position:chr9:20896756-20896970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):44, 83

               
               
               Conread position:14-239
               
               
               Cow position:chr9:19637782-19637557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):98, 60

               
               
               Conread position:15-239
               
               
               Cow position:chr9:27292419-27292197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):110, 11

               
               
               Conread position:15-239
               
               
               Cow position:chr9:32847746-32847966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):109, 140

               
               
               Conread position:16-194
               
               
               Cow position:chr9:20668245-20668410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:16-237
               
               
               Cow position:chr9:38926947-38927158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):110, 46

               
               
               Conread position:17-198
               
               
               Cow position:chr9:2863308-2863484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):112, 22

               
               
               Conread position:18-212
               
               
               Cow position:chr9:41958919-41958731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):6, 57

               
               
               Conread position:19-239
               
               
               Cow position:chr9:3931818-3932040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):41, 79

               
               
               Conread position:19-239
               
               
               Cow position:chr9:54206464-54206245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):106, 196

               
               
               Conread position:21-238
               
               
               Cow position:chr9:34725645-34725433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:21-239
               
               
               Cow position:chr9:10127804-10127594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:22-189
               
               
               Cow position:chr9:11102936-11102771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):102, 131

               
               
               Conread position:23-166
               
               
               Cow position:chr9:45510883-45510744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):33, 73

               
               
               Conread position:25-189
               
               
               Cow position:chr9:6214282-6214122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):80, 60

               
               
               Conread position:26-239
               
               
               Cow position:chr9:9200854-9200644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):98, 80

               
               
               Conread position:26-239
               
               
               Cow position:chr9:14184538-14184743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):102, 42

               
               
               Conread position:26-239
               
               
               Cow position:chr9:32817272-32817060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):98, 16

               
               
               Conread position:33-227
               
               
               Cow position:chr9:64008007-64007816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:35-201
               
               
               Cow position:chr9:59761757-59761589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:35-234
               
               
               Cow position:chr9:5059438-5059245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):89, 106

               
               
               Conread position:37-214
               
               
               Cow position:chr9:34568832-34568658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):27, 37

               
               
               Conread position:37-228
               
               
               Cow position:chr9:16118606-16118794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):7, 62

               
               
               Conread position:40-239
               
               
               Cow position:chr9:47925805-47926005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):65, 76

               
               
               Conread position:41-235
               
               
               Cow position:chr9:50598430-50598244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):87, 102

               
               
               Conread position:43-239
               
               
               Cow position:chr9:15951275-15951075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):19, 58

               
               
               Conread position:48-222
               
               
               Cow position:chr9:34106603-34106787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):57, 164

               
               
               Conread position:49-239
               
               
               Cow position:chr9:41957697-41957884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):79, 108

               
               
               Conread position:56-238
               
               
               Cow position:chr9:4858434-4858616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):72, 18

               
               
               Conread position:57-208
               
               
               Cow position:chr9:48576743-48576596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):68, 41

               
               
               Conread position:63-205
               
               
               Cow position:chr9:26093232-26093374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 37

               
               
               Conread position:86-239
               
               
               Cow position:chr9:11201517-11201671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:86-239
               
               
               Cow position:chr9:11363824-11363973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 26

               
               
               Conread position:87-221
               
               
               Cow position:chr9:44552675-44552810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:88-226
               
               
               Cow position:chr9:214531-214394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 123

               
               
               Conread position:1-130
               
               
               Cow position:chrX:29056502-29056372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-147
               
               
               Cow position:chrX:30862549-30862406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):123, 29

               
               
               Conread position:1-150
               
               
               Cow position:chrX:25602543-25602394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):124, 116

               
               
               Conread position:1-163
               
               
               Cow position:chrX:488889-488729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):123, 42

               
               
               Conread position:1-166
               
               
               Cow position:chrX:46028548-46028714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:1-168
               
               
               Cow position:chrX:31273416-31273246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):71, 84

               
               
               Conread position:1-216
               
               
               Cow position:chrX:39338895-39339108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):79, 39

               
               
               Conread position:1-218
               
               
               Cow position:chrX:39415156-39415375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):79, 37

               
               
               Conread position:1-223
               
               
               Cow position:chrX:29874158-29874380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):123, 98

               
               
               Conread position:1-227
               
               
               Cow position:chrX:10959182-10959407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):121, 70

               
               
               Conread position:1-234
               
               
               Cow position:chrX:27287525-27287753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):124, 42

               
               
               Conread position:1-235
               
               
               Cow position:chrX:7646471-7646231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):12, 228

               
               
               Conread position:1-237
               
               
               Cow position:chrX:39000062-38999834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):123, 147

               
               
               Conread position:1-239
               
               
               Cow position:chrX:19678066-19678289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):123, 39

               
               
               Conread position:1-239
               
               
               Cow position:chrX:32310316-32310079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):79, 39

               
               
               Conread position:1-239
               
               
               Cow position:chrX:32431833-32431598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):123, 34

               
               
               Conread position:1-239
               
               
               Cow position:chrX:33802794-33803029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):126, 154

               
               
               Conread position:1-239
               
               
               Cow position:chrX:34355762-34355990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):124, 68

               
               
               Conread position:1-239
               
               
               Cow position:chrX:40692538-40692776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):123, 85

               
               
               Conread position:2-165
               
               
               Cow position:chrX:37140681-37140517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):70, 28

               
               
               Conread position:2-177
               
               
               Cow position:chrX:30483797-30483972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):117, 47

               
               
               Conread position:2-179
               
               
               Cow position:chrX:17952763-17952942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:2-180
               
               
               Cow position:chrX:39832625-39832449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 44

               
               
               Conread position:2-198
               
               
               Cow position:chrX:6677039-6676840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:2-228
               
               
               Cow position:chrX:7425677-7425456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):120, 12

               
               
               Conread position:2-239
               
               
               Cow position:chrX:18286870-18287102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:2-239
               
               
               Cow position:chrX:22624693-22624450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:2-239
               
               
               Cow position:chrX:36009703-36009935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):122, 36

               
               
               Conread position:3-163
               
               
               Cow position:chrX:37186371-37186212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:3-217
               
               
               Cow position:chrX:1503539-1503325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):121, 166

               
               
               Conread position:3-220
               
               
               Cow position:chrX:41084128-41083911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):77, 207

               
               
               Conread position:3-221
               
               
               Cow position:chrX:6367563-6367788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:3-226
               
               
               Cow position:chrX:26618907-26619120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):53, 12

               
               
               Conread position:3-230
               
               
               Cow position:chrX:41732991-41733224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):77, 35

               
               
               Conread position:3-234
               
               
               Cow position:chrX:6203752-6203522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):121, 17

               
               
               Conread position:3-237
               
               
               Cow position:chrX:10302549-10302316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):121, 37

               
               
               Conread position:3-237
               
               
               Cow position:chrX:24131947-24132171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):121, 11

               
               
               Conread position:3-238
               
               
               Cow position:chrX:25714007-25713769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:3-239
               
               
               Cow position:chrX:630089-630331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):26, 214

               
               
               Conread position:3-239
               
               
               Cow position:chrX:6041002-6041235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):121, 35

               
               
               Conread position:3-239
               
               
               Cow position:chrX:7497448-7497217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):60, 40

               
               
               Conread position:3-239
               
               
               Cow position:chrX:9839433-9839203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):122, 40

               
               
               Conread position:3-239
               
               
               Cow position:chrX:27771366-27771598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):68, 93

               
               
               Conread position:3-239
               
               
               Cow position:chrX:43426502-43426269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):121, 37

               
               
               Conread position:4-105
               
               
               Cow position:chrX:22121961-22122062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:4-150
               
               
               Cow position:chrX:4545145-4545289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:4-165
               
               
               Cow position:chrX:30420736-30420904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:4-180
               
               
               Cow position:chrX:38722328-38722155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):120, 66

               
               
               Conread position:4-187
               
               
               Cow position:chrX:16291807-16291993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):37, 94

               
               
               Conread position:4-238
               
               
               Cow position:chrX:31602867-31602634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 40

               
               
               Conread position:4-239
               
               
               Cow position:chrX:1499885-1499642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):68, 221

               
               
               Conread position:4-239
               
               
               Cow position:chrX:6563728-6563498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):120, 39

               
               
               Conread position:4-239
               
               
               Cow position:chrX:9539530-9539301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):121, 39

               
               
               Conread position:4-239
               
               
               Cow position:chrX:20791609-20791841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):115, 33

               
               
               Conread position:4-239
               
               
               Cow position:chrX:21640634-21640402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):126, 26

               
               
               Conread position:4-239
               
               
               Cow position:chrX:23414166-23414394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:4-239
               
               
               Cow position:chrX:25388039-25388258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):11, 38

               
               
               Conread position:5-201
               
               
               Cow position:chrX:12304770-12304573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):123, 55

               
               
               Conread position:5-202
               
               
               Cow position:chrX:46084182-46083982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:5-227
               
               
               Cow position:chrX:2786355-2786571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):122, 43

               
               
               Conread position:5-227
               
               
               Cow position:chrX:15049692-15049482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):120, 35

               
               
               Conread position:5-239
               
               
               Cow position:chrX:15305086-15305325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:5-239
               
               
               Cow position:chrX:16514066-16514287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):119, 15

               
               
               Conread position:5-239
               
               
               Cow position:chrX:21664515-21664745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):122, 35

               
               
               Conread position:6-185
               
               
               Cow position:chrX:28835550-28835734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):100, 32

               
               
               Conread position:6-214
               
               
               Cow position:chrX:17964317-17964523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):74, 34

               
               
               Conread position:6-215
               
               
               Cow position:chrX:8780252-8780042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):57, 74

               
               
               Conread position:6-237
               
               
               Cow position:chrX:25570776-25571017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 8

               
               
               Conread position:6-239
               
               
               Cow position:chrX:19879245-19879021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):118, 34

               
               
               Conread position:6-239
               
               
               Cow position:chrX:40789412-40789186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):127, 89

               
               
               Conread position:8-150
               
               
               Cow position:chrX:29675706-29675562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:8-201
               
               
               Cow position:chrX:15233060-15233253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):8, 54

               
               
               Conread position:8-228
               
               
               Cow position:chrX:15329849-15329633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):116, 181

               
               
               Conread position:8-237
               
               
               Cow position:chrX:3154041-3154266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):12, 27

               
               
               Conread position:8-239
               
               
               Cow position:chrX:22326321-22326096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):117, 35

               
               
               Conread position:9-221
               
               
               Cow position:chrX:42011487-42011273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:9-228
               
               
               Cow position:chrX:48428719-48428490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:9-234
               
               
               Cow position:chrX:48089198-48089423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):63, 189

               
               
               Conread position:9-239
               
               
               Cow position:chrX:8918038-8917820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):115, 5

               
               
               Conread position:9-239
               
               
               Cow position:chrX:19930849-19930628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:11-237
               
               
               Cow position:chrX:20377167-20376947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):113, 83

               
               
               Conread position:11-239
               
               
               Cow position:chrX:25338388-25338162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):114, 26

               
               
               Conread position:13-221
               
               
               Cow position:chrX:23179080-23179291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):33, 56

               
               
               Conread position:14-228
               
               
               Cow position:chrX:6674714-6674932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):96, 81

               
               
               Conread position:17-239
               
               
               Cow position:chrX:31340907-31340686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):108, 6

               
               
               Conread position:18-176
               
               
               Cow position:chrX:10289431-10289589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):7, 27

               
               
               Conread position:19-166
               
               
               Cow position:chrX:18417111-18417257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:19-205
               
               
               Cow position:chrX:29761488-29761676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):87, 97

               
               
               Conread position:19-208
               
               
               Cow position:chrX:27276893-27276700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):55, 92

               
               
               Conread position:19-228
               
               
               Cow position:chrX:39545795-39545988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):111, 22

               
               
               Conread position:19-229
               
               
               Cow position:chrX:17542157-17541944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 195

               
               
               Conread position:20-234
               
               
               Cow position:chrX:22481599-22481802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):105, 41

               
               
               Conread position:20-239
               
               
               Cow position:chrX:24259386-24259606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 76

               
               
               Conread position:20-239
               
               
               Cow position:chrX:28930030-28929814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):197, 80

               
               
               Conread position:21-201
               
               
               Cow position:chrX:39126517-39126338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):103, 17

               
               
               Conread position:23-162
               
               
               Cow position:chrX:8103101-8103237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):101, 20

               
               
               Conread position:23-221
               
               
               Cow position:chrX:30979944-30980141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):112, 180

               
               
               Conread position:23-237
               
               
               Cow position:chrX:29407832-29408046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):105, 21

               
               
               Conread position:24-237
               
               
               Cow position:chrX:35759745-35759960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:29-164
               
               
               Cow position:chrX:46146090-46146224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):76, 81

               
               
               Conread position:31-208
               
               
               Cow position:chrX:159575-159750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):33, 124

               
               
               Conread position:34-187
               
               
               Cow position:chrX:17042861-17042709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):94, 9

               
               
               Conread position:36-239
               
               
               Cow position:chrX:17630622-17630829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):69, 73

               
               
               Conread position:40-239
               
               
               Cow position:chrX:7806599-7806400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:41-234
               
               
               Cow position:chrX:2301098-2300905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):83, 151

               
               
               Conread position:43-208
               
               
               Cow position:chrX:16419318-16419156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 114

               
               
               Conread position:43-237
               
               
               Cow position:chrX:27176142-27176337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):82, 38

               
               
               Conread position:49-179
               
               
               Cow position:chrX:24747020-24747149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):122, 76

               
               
               Conread position:70-239
               
               
               Cow position:chrX:30163150-30162974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:79-238
               
               
               Cow position:chrX:9041108-9041267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:87-237
               
               
               Cow position:chrX:28111637-28111486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 127
Conread position:	1-139
Cow position:	chr1:55181635-55181774 (view UCSC Genome Browser custom track)
Alignm length:	140
Alignm identity:	111
Alignm E-value:	5e-29
Alignm gaps (pig, cow):	123, 0
Conread position:	1-149
Cow position:	chr1:3570120-3570266 (view UCSC Genome Browser custom track)
Alignm length:	149
Alignm identity:	109
Alignm E-value:	7e-22
Alignm gaps (pig, cow):	13, 0
Conread position:	1-162
Cow position:	chr1:96043812-96043648 (view UCSC Genome Browser custom track)
Alignm length:	166
Alignm identity:	121
Alignm E-value:	8e-24
Alignm gaps (pig, cow):	123, 69
Conread position:	1-165
Cow position:	chr1:43790046-43789883 (view UCSC Genome Browser custom track)
Alignm length:	165
Alignm identity:	124
Alignm E-value:	2e-29
Alignm gaps (pig, cow):	159, 0
Conread position:	1-166
Cow position:	chr1:9958697-9958530 (view UCSC Genome Browser custom track)
Alignm length:	169
Alignm identity:	124
Alignm E-value:	9e-25
Alignm gaps (pig, cow):	35, 149
Conread position:	1-187
Cow position:	chr1:36896969-36897147 (view UCSC Genome Browser custom track)
Alignm length:	190
Alignm identity:	143
Alignm E-value:	3e-26
Alignm gaps (pig, cow):	49, 14
Conread position:	1-189
Cow position:	chr1:88910713-88910898 (view UCSC Genome Browser custom track)
Alignm length:	193
Alignm identity:	143
Alignm E-value:	4e-27
Alignm gaps (pig, cow):	104, 39
Conread position:	1-197
Cow position:	chr1:62732757-62732568 (view UCSC Genome Browser custom track)
Alignm length:	198
Alignm identity:	146
Alignm E-value:	4e-28
Alignm gaps (pig, cow):	124, 42
Conread position:	1-204
Cow position:	chr1:70416319-70416118 (view UCSC Genome Browser custom track)
Alignm length:	205
Alignm identity:	157
Alignm E-value:	4e-39
Alignm gaps (pig, cow):	123, 14
Conread position:	1-216
Cow position:	chr1:75998279-75998491 (view UCSC Genome Browser custom track)
Alignm length:	219
Alignm identity:	156
Alignm E-value:	1e-27
Alignm gaps (pig, cow):	124, 41
Conread position:	1-218
Cow position:	chr1:74081790-74082008 (view UCSC Genome Browser custom track)
Alignm length:	221
Alignm identity:	146
Alignm E-value:	6e-21
Alignm gaps (pig, cow):	123, 78
Conread position:	1-221
Cow position:	chr1:3288956-3289168 (view UCSC Genome Browser custom track)
Alignm length:	222
Alignm identity:	157
Alignm E-value:	4e-27
Alignm gaps (pig, cow):	129, 42
Conread position:	1-222
Cow position:	chr1:57119155-57119374 (view UCSC Genome Browser custom track)
Alignm length:	222
Alignm identity:	167
Alignm E-value:	7.00649e-43
Alignm gaps (pig, cow):	208, 0
Conread position:	1-224
Cow position:	chr1:21787535-21787306 (view UCSC Genome Browser custom track)
Alignm length:	232
Alignm identity:	160
Alignm E-value:	9e-25
Alignm gaps (pig, cow):	56, 215
Conread position:	1-227
Cow position:	chr1:88321754-88321972 (view UCSC Genome Browser custom track)
Alignm length:	227
Alignm identity:	155
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	26, 0
Conread position:	1-230
Cow position:	chr1:85141544-85141768 (view UCSC Genome Browser custom track)
Alignm length:	232
Alignm identity:	168
Alignm E-value:	8e-34
Alignm gaps (pig, cow):	123, 16
Conread position:	1-235
Cow position:	chr1:36613900-36614127 (view UCSC Genome Browser custom track)
Alignm length:	237
Alignm identity:	164
Alignm E-value:	1e-25
Alignm gaps (pig, cow):	123, 42
Conread position:	1-238
Cow position:	chr1:50634068-50634302 (view UCSC Genome Browser custom track)
Alignm length:	239
Alignm identity:	165
Alignm E-value:	2e-30
Alignm gaps (pig, cow):	129, 155
Conread position:	1-239
Cow position:	chr1:2765593-2765368 (view UCSC Genome Browser custom track)
Alignm length:	240
Alignm identity:	163
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	124, 42
Conread position:	2-149
Cow position:	chr1:44169845-44169695 (view UCSC Genome Browser custom track)
Alignm length:	151
Alignm identity:	112
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	9, 0