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Cow genome map

           
Conread name:
           
4civ-UMC-p4civv1-004-c09
        

               
Conread position:
               
1-155
               

               
Cow position:
               
chr23:15844408-15844245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1-163
               

               
Cow position:
               
chr23:21343444-21343285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
22, 41
               

               
Conread position:
               
1-174
               

               
Cow position:
               
chr23:7596526-7596354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
22, 41
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr23:344372-344196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr23:1991621-1991446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr23:38854929-38854733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 41
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr23:18367501-18367716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
21, 32
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr23:36076015-36075801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 54
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr23:808972-809182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
21, 17
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr23:32961563-32961342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr23:2055508-2055729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr23:26632605-26632829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr23:8959402-8959643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
21, 110
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr23:7402512-7402760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 32
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr23:19371265-19371013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 39
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr23:18322614-18322364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
22, 91
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr23:25378460-25378709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
142, 27
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr23:4980738-4980460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 38
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr23:22399207-22399512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
21, 90
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr23:11045290-11045598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
111, 53
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr23:40781132-40781441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
23, 40
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr23:2799372-2799699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
22, 68
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr23:39775536-39775845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
22, 40
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr23:1742163-1742474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
142, 31
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr23:13599147-13599461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr23:15287328-15287015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
22, 93
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr23:18902245-18901930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
27, 94
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr23:32105678-32106002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
22, 29
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr23:40648922-40648606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
23, 89
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr23:1254483-1254813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
81, 63
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr23:1924030-1923712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr23:6995168-6994857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr23:10554206-10553883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 92
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr23:11380452-11380126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
21, 92
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr23:18296613-18296933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr23:38208516-38208852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 41
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr23:9734220-9734535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr23:27544638-27544953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
22, 37
               

               
Conread position:
               
1-330
               

               
Cow position:
               
chr23:5723349-5723664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
22, 40
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr23:24704085-24704424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
22, 32
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr23:4529086-4528739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
22, 96
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr23:6244781-6244459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
27, 90
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr23:14739254-14739586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
21, 55
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr23:21336683-21336348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
23, 36
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr23:36017948-36018288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
25, 136
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chr23:29034119-29034451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chr23:38455379-38455038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 9
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr23:1536133-1536464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
21, 44
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr23:16631070-16631416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
21, 104
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr23:1189096-1188768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
23, 46
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr23:20558053-20557693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
22, 172
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr23:18698219-18697872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
22, 37
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr23:2282372-2282022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr23:25675887-25675533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
21, 38
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr23:26986468-26986097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
139, 89
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr23:7845095-7845462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
23, 77
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chr23:11129040-11129406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chr23:40778068-40778438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 91
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr23:186977-187358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 72
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr23:7175426-7175792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
21, 30
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr23:12290088-12290448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 11
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr23:1398232-1397855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 32
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr23:2179841-2179481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
311, 61
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr23:26795098-26794732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
22, 64
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr23:8293307-8293692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
21, 74
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr23:10085377-10085002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
21, 38
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr23:20248894-20248512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
23, 92
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr23:28206417-28206781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr23:31601652-31601268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
21, 158
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr23:1290099-1290489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
22, 54
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr23:1883199-1883576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
22, 41
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr23:1885370-1884990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 91
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr23:3247394-3247772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
142, 21
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr23:4646319-4646690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
23, 28
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr23:5617382-5617758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
21, 38
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr23:10852858-10853230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 21
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr23:16690256-16689882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
21, 116
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr23:18802467-18802084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
21, 30
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr23:22496761-22496375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
21, 41
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr23:25864878-25864511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
22, 32
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr23:29786547-29786160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
21, 30
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr23:40502707-40502329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
138, 108
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr23:41472415-41472808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 92
               

               
Conread position:
               
1-387
               

               
Cow position:
               
chr23:5870377-5870006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
21, 55
               

               
Conread position:
               
1-387
               

               
Cow position:
               
chr23:16847768-16848156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 177
               

               
Conread position:
               
1-387
               

               
Cow position:
               
chr23:36726110-36725730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 110
               

               
Conread position:
               
1-388
               

               
Cow position:
               
chr23:19758817-19758443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 28
               

               
Conread position:
               
1-388
               

               
Cow position:
               
chr23:24509507-24509869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
144, 19
               

               
Conread position:
               
2-172
               

               
Cow position:
               
chr23:35254431-35254264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 54
               

               
Conread position:
               
2-174
               

               
Cow position:
               
chr23:4523172-4523001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
21, 45
               

               
Conread position:
               
2-174
               

               
Cow position:
               
chr23:36199100-36199267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
21, 59
               

               
Conread position:
               
2-202
               

               
Cow position:
               
chr23:10014342-10014542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
20, 91
               

               
Conread position:
               
2-230
               

               
Cow position:
               
chr23:20057060-20056834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
21, 54
               

               
Conread position:
               
2-328
               

               
Cow position:
               
chr23:16700232-16699914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 18
               

               
Conread position:
               
2-338
               

               
Cow position:
               
chr23:33717737-33717405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
21, 89
               

               
Conread position:
               
2-375
               

               
Cow position:
               
chr23:30585855-30585477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
20, 79
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chr23:33695968-33695586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
20, 108
               

               
Conread position:
               
2-384
               

               
Cow position:
               
chr23:5426234-5426618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
21, 89
               

               
Conread position:
               
2-386
               

               
Cow position:
               
chr23:21452926-21452549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
21, 40
               

               
Conread position:
               
2-388
               

               
Cow position:
               
chr23:41348842-41348443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
21, 90
               

               
Conread position:
               
2-389
               

               
Cow position:
               
chr23:22804530-22804909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
21, 35
               

               
Conread position:
               
3-212
               

               
Cow position:
               
chr23:15710271-15710067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
20, 36
               

               
Conread position:
               
3-312
               

               
Cow position:
               
chr23:14164592-14164283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
21, 28
               

               
Conread position:
               
3-325
               

               
Cow position:
               
chr23:39752922-39753238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 88
               

               
Conread position:
               
3-326
               

               
Cow position:
               
chr23:38503309-38502982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
103, 69
               

               
Conread position:
               
3-333
               

               
Cow position:
               
chr23:5706808-5707126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
20, 30
               

               
Conread position:
               
3-375
               

               
Cow position:
               
chr23:6767698-6768081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
19, 53
               

               
Conread position:
               
3-386
               

               
Cow position:
               
chr23:1337497-1337124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
19, 90
               

               
Conread position:
               
3-388
               

               
Cow position:
               
chr23:37065645-37066041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 90
               

               
Conread position:
               
3-390
               

               
Cow position:
               
chr23:24930265-24929882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
19, 107
               

               
Conread position:
               
4-307
               

               
Cow position:
               
chr23:1721175-1720876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
4-320
               

               
Cow position:
               
chr23:29459280-29458979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
19, 52
               

               
Conread position:
               
4-327
               

               
Cow position:
               
chr23:1776822-1776513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
19, 29
               

               
Conread position:
               
4-335
               

               
Cow position:
               
chr23:24867111-24867444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
19, 90
               

               
Conread position:
               
4-340
               

               
Cow position:
               
chr23:4810559-4810880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
4-386
               

               
Cow position:
               
chr23:534038-534409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
19, 35
               

               
Conread position:
               
4-386
               

               
Cow position:
               
chr23:29021486-29021850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 37
               

               
Conread position:
               
5-183
               

               
Cow position:
               
chr23:1068503-1068329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
18, 26
               

               
Conread position:
               
5-183
               

               
Cow position:
               
chr23:22530608-22530430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
17, 86
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr23:33569945-33570200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
18, 23
               

               
Conread position:
               
5-294
               

               
Cow position:
               
chr23:4562691-4562979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
18, 93
               

               
Conread position:
               
5-326
               

               
Cow position:
               
chr23:18402476-18402165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
18, 28
               

               
Conread position:
               
5-327
               

               
Cow position:
               
chr23:21445926-21446243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
18, 26
               

               
Conread position:
               
5-331
               

               
Cow position:
               
chr23:13520263-13520583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
17, 34
               

               
Conread position:
               
5-362
               

               
Cow position:
               
chr23:4968714-4968368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 50
               

               
Conread position:
               
5-386
               

               
Cow position:
               
chr23:4726597-4726975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
18, 11
               

               
Conread position:
               
5-387
               

               
Cow position:
               
chr23:26849095-26848711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
17, 105
               

               
Conread position:
               
6-216
               

               
Cow position:
               
chr23:29242757-29242965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
16, 86
               

               
Conread position:
               
6-310
               

               
Cow position:
               
chr23:40844460-40844759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
16, 86
               

               
Conread position:
               
6-331
               

               
Cow position:
               
chr23:21764728-21765050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
18, 50
               

               
Conread position:
               
7-298
               

               
Cow position:
               
chr23:27996945-27997226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 48
               

               
Conread position:
               
8-388
               

               
Cow position:
               
chr23:16881345-16880985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
9-320
               

               
Cow position:
               
chr23:2316606-2316907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
13, 131
               

               
Conread position:
               
11-386
               

               
Cow position:
               
chr23:19221840-19221458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
11, 157
               

               
Conread position:
               
12-368
               

               
Cow position:
               
chr23:3282298-3281945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
11, 21
               

               
Conread position:
               
14-386
               

               
Cow position:
               
chr23:34356452-34356824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
9, 155
               

               
Conread position:
               
24-386
               

               
Cow position:
               
chr23:3245099-3244732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
15, 157
               

               
Conread position:
               
25-338
               

               
Cow position:
               
chr23:12334037-12334347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
120, 13
               

               
Conread position:
               
25-375
               

               
Cow position:
               
chr23:8837861-8837515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
156, 116
               

               
Conread position:
               
28-326
               

               
Cow position:
               
chr23:7574802-7574499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
117, 63
               

               
Conread position:
               
34-164
               

               
Cow position:
               
chr23:31739694-31739826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
113, 59
               

               
Conread position:
               
34-216
               

               
Cow position:
               
chr23:3955248-3955434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
109, 25
               

               
Conread position:
               
34-259
               

               
Cow position:
               
chr23:38973678-38973906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
59, 143
               

               
Conread position:
               
34-308
               

               
Cow position:
               
chr23:36309257-36309528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
34-339
               

               
Cow position:
               
chr23:4104241-4104536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
111, 32
               

               
Conread position:
               
34-386
               

               
Cow position:
               
chr23:2502017-2501674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
106, 59
               

               
Conread position:
               
34-386
               

               
Cow position:
               
chr23:20195078-20194747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
109, 21
               

               
Conread position:
               
34-386
               

               
Cow position:
               
chr23:33711598-33711945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
111, 58
               

               
Conread position:
               
34-386
               

               
Cow position:
               
chr23:39813341-39813685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
110, 56
               

               
Conread position:
               
35-319
               

               
Cow position:
               
chr23:19774611-19774887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
108, 57
               

               
Conread position:
               
35-388
               

               
Cow position:
               
chr23:26949036-26949376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
110, 57
               

               
Conread position:
               
36-342
               

               
Cow position:
               
chr23:18416210-18415914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
107, 58
               

               
Conread position:
               
36-352
               

               
Cow position:
               
chr23:5540000-5540294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
106, 54
               

               
Conread position:
               
38-174
               

               
Cow position:
               
chr23:18107504-18107365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
98, 123
               

               
Conread position:
               
38-311
               

               
Cow position:
               
chr23:26050876-26051149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
105, 54
               

               
Conread position:
               
38-355
               

               
Cow position:
               
chr23:33622312-33621995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
104, 54
               

               
Conread position:
               
41-143
               

               
Cow position:
               
chr23:4421140-4421041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 49
               

               
Conread position:
               
41-225
               

               
Cow position:
               
chr23:23113872-23114057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
102, 133
               

               
Conread position:
               
41-263
               

               
Cow position:
               
chr23:1921384-1921164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
103, 53
               

               
Conread position:
               
41-326
               

               
Cow position:
               
chr23:13945872-13946163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
52, 139
               

               
Conread position:
               
41-334
               

               
Cow position:
               
chr23:18286040-18286326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
8, 30
               

               
Conread position:
               
41-374
               

               
Cow position:
               
chr23:35239189-35239524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
47, 31
               

               
Conread position:
               
41-375
               

               
Cow position:
               
chr23:39778249-39778570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
104, 52
               

               
Conread position:
               
41-386
               

               
Cow position:
               
chr23:9599339-9599671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
149, 49
               

               
Conread position:
               
41-386
               

               
Cow position:
               
chr23:15742935-15743274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
103, 50
               

               
Conread position:
               
42-216
               

               
Cow position:
               
chr23:40485125-40484954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
41, 135
               

               
Conread position:
               
42-230
               

               
Cow position:
               
chr23:26942284-26942472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
100, 26
               

               
Conread position:
               
42-327
               

               
Cow position:
               
chr23:33601684-33601412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
101, 49
               

               
Conread position:
               
42-332
               

               
Cow position:
               
chr23:6592859-6592576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
51, 128
               

               
Conread position:
               
43-263
               

               
Cow position:
               
chr23:4329836-4329612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
100, 48
               

               
Conread position:
               
43-325
               

               
Cow position:
               
chr23:23409581-23409858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
16, 51
               

               
Conread position:
               
43-339
               

               
Cow position:
               
chr23:4966665-4966957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
98, 38
               

               
Conread position:
               
44-339
               

               
Cow position:
               
chr23:5162272-5162568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
99, 48
               

               
Conread position:
               
44-386
               

               
Cow position:
               
chr23:16583069-16582724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 129
               

               
Conread position:
               
45-386
               

               
Cow position:
               
chr23:349880-349538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
94, 124
               

               
Conread position:
               
47-351
               

               
Cow position:
               
chr23:37886-38178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
138, 44
               

               
Conread position:
               
47-386
               

               
Cow position:
               
chr23:799818-799483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
98, 45
               

               
Conread position:
               
48-386
               

               
Cow position:
               
chr23:5436794-5436457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 21
               

               
Conread position:
               
48-386
               

               
Cow position:
               
chr23:12470788-12471113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
121, 67
               

               
Conread position:
               
48-387
               

               
Cow position:
               
chr23:10829732-10829395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
74, 96
               

               
Conread position:
               
49-388
               

               
Cow position:
               
chr23:1655746-1656079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
90, 16
               

               
Conread position:
               
51-388
               

               
Cow position:
               
chr23:34416414-34416749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
91, 111
               

               
Conread position:
               
55-384
               

               
Cow position:
               
chr23:12363761-12363438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
90, 35
               

               
Conread position:
               
57-290
               

               
Cow position:
               
chr23:1647478-1647706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
85, 35
               

               
Conread position:
               
58-375
               

               
Cow position:
               
chr23:36244207-36244520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
75, 85
               

               
Conread position:
               
62-386
               

               
Cow position:
               
chr23:5437134-5436818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
83, 29
               

               
Conread position:
               
65-352
               

               
Cow position:
               
chr23:468593-468314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
69-382
               

               
Cow position:
               
chr23:11081129-11081437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
73, 22
               

               
Conread position:
               
70-386
               

               
Cow position:
               
chr23:3890694-3890389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
120, 24
               

               
Conread position:
               
73-225
               

               
Cow position:
               
chr23:9713191-9713347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
20, 103
               

               
Conread position:
               
73-308
               

               
Cow position:
               
chr23:5732425-5732658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
67, 17
               

               
Conread position:
               
73-386
               

               
Cow position:
               
chr23:5795353-5795659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
69, 17
               

               
Conread position:
               
74-386
               

               
Cow position:
               
chr23:9226150-9226457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
69, 17
               

               
Conread position:
               
78-308
               

               
Cow position:
               
chr23:27529227-27528976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
81-365
               

               
Cow position:
               
chr23:306405-306687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
64, 31
               

               
Conread position:
               
82-365
               

               
Cow position:
               
chr23:39573375-39573094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
63, 36
               

               
Conread position:
               
83-343
               

               
Cow position:
               
chr23:283505-283253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
60, 32
               

               
Conread position:
               
85-343
               

               
Cow position:
               
chr23:28945180-28944926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
58, 76
               

               
Conread position:
               
85-386
               

               
Cow position:
               
chr23:307342-307641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
60, 27
               

               
Conread position:
               
86-352
               

               
Cow position:
               
chr23:16797924-16797654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
57, 163
               

               
Conread position:
               
88-365
               

               
Cow position:
               
chr23:22574029-22573744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
57, 197
               

               
Conread position:
               
92-350
               

               
Cow position:
               
chr23:39275781-39276046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
52, 226
               

               
Conread position:
               
93-337
               

               
Cow position:
               
chr23:1701063-1701310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
52, 91
               

               
Conread position:
               
97-375
               

               
Cow position:
               
chr23:15280602-15280322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 87
               

               
Conread position:
               
98-346
               

               
Cow position:
               
chr23:18036760-18036512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
44, 63
               

               
Conread position:
               
114-386
               

               
Cow position:
               
chr23:17486913-17486644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
31, 46
               

               
Conread position:
               
124-386
               

               
Cow position:
               
chr23:5881595-5881338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
16, 53
               

               
Conread position:
               
153-388
               

               
Cow position:
               
chr23:4003595-4003834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
15, 29
               

               
Conread position:
               
194-386
               

               
Cow position:
               
chr23:32621277-32621471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
58, 0
               
Show alignments to all cow chromosomes.