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Cow genome map

           
Conread name:
           
4civ-UMC-p4civv1-004-c09
        

               
Conread position:
               
1-126
               

               
Cow position:
               
chrX:42855239-42855365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1-128
               

               
Cow position:
               
chrX:6639956-6640082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
21, 38
               

               
Conread position:
               
1-137
               

               
Cow position:
               
chrX:41271377-41271246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
22, 29
               

               
Conread position:
               
1-144
               

               
Cow position:
               
chrX:45043389-45043528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
22, 109
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chrX:25411667-25411821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
35, 74
               

               
Conread position:
               
1-157
               

               
Cow position:
               
chrX:40452382-40452225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
21, 90
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chrX:19188767-19188929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
22, 55
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chrX:37048749-37048583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 91
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chrX:19019280-19019110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
22, 62
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chrX:30833015-30832851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
22, 55
               

               
Conread position:
               
1-173
               

               
Cow position:
               
chrX:21665763-21665595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
23, 38
               

               
Conread position:
               
1-173
               

               
Cow position:
               
chrX:43049175-43049349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 91
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chrX:10437834-10437666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
23, 41
               

               
Conread position:
               
1-176
               

               
Cow position:
               
chrX:42339105-42338944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
21, 38
               

               
Conread position:
               
1-176
               

               
Cow position:
               
chrX:42461915-42461739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
22, 60
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chrX:37540955-37541130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 41
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chrX:35609817-35609998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
23, 41
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chrX:32020291-32020106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
21, 38
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chrX:20709902-20710100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
33, 92
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chrX:23497834-23497642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chrX:40567430-40567624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 123
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chrX:38439305-38439511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chrX:9997503-9997297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
144, 22
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chrX:9855131-9855338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 91
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chrX:9953972-9954179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
21, 91
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chrX:12115870-12116087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
21, 32
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chrX:40647808-40648026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chrX:29509613-29509397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
21, 40
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chrX:44834985-44834760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
23, 206
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chrX:19015273-19015486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
175, 24
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chrX:45993049-45993275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
21, 70
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chrX:8899855-8900079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
21, 82
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chrX:41198935-41199158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
21, 41
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chrX:7718685-7718903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
23, 72
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chrX:12018106-12018346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
68, 22
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chrX:678737-678500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
22, 72
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chrX:14924830-14925057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chrX:26876052-26875826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
22, 32
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chrX:38071940-38071689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
21, 93
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chrX:11589758-11589509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
144, 19
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chrX:17662766-17662514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chrX:37843551-37843803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 32
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chrX:754789-755051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 91
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chrX:27680232-27680485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chrX:35224129-35224383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
65, 29
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chrX:42171469-42171207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
23, 69
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chrX:47967430-47967720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 44
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chrX:45089273-45089563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 171
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chrX:45149005-45149285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
22, 137
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chrX:46722910-46722617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
21, 160
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chrX:47301073-47300786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 36
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chrX:47303049-47302760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
21, 110
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chrX:48195210-48194918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 40
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chrX:11856259-11856551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
24, 40
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chrX:21004512-21004806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
22, 55
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chrX:8925536-8925822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
22, 36
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chrX:18695089-18694803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chrX:37910283-37910574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
231, 22
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chrX:19690048-19690345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
22, 133
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chrX:36067850-36068147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
21, 30
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chrX:20151681-20151990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
92, 22
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chrX:36778238-36778532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 91
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chrX:4044020-4043722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
22, 60
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chrX:43780022-43779707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 93
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chrX:45598773-45598460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
21, 69
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chrX:151732-152048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
22, 11
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chrX:3654435-3654757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
22, 92
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chrX:11717952-11717634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
144, 23
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chrX:42492684-42492375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
22, 40
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chrX:46072990-46072668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
20, 60
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chrX:28878328-28878024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
144, 22
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chrX:31311856-31312179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chrX:37489561-37489868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
136, 22
               

               
Conread position:
               
1-330
               

               
Cow position:
               
chrX:32171051-32170735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
141, 20
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chrX:9425911-9425597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
21, 58
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chrX:37836418-37836733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
27, 55
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chrX:40809517-40809848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
21, 29
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chrX:17888575-17888265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
144, 8
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chrX:34401828-34402164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
15, 33
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chrX:38963937-38964266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 40
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chrX:1616217-1615891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
21, 92
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chrX:619177-618847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chrX:34502749-34503083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chrX:35268718-35269022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
23, 40
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chrX:13382156-13382487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
22, 93
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chrX:22821878-22822210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
22, 89
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chrX:23785484-23785810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
22, 148
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chrX:27394183-27393864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
23, 40
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chrX:33000734-33001067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 64
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chrX:40269315-40269656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chrX:40481042-40480703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
21, 91
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chrX:43730384-43730062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
22, 55
               

               
Conread position:
               
1-339
               

               
Cow position:
               
chrX:33639802-33640138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
23, 38
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chrX:20697777-20697447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
1-342
               

               
Cow position:
               
chrX:7178738-7179060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
151, 19
               

               
Conread position:
               
1-342
               

               
Cow position:
               
chrX:45430186-45429857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chrX:7721815-7722156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
22, 91
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chrX:9416862-9416514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
144, 22
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chrX:17725805-17726146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chrX:44657134-44656785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
21, 58
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chrX:14599360-14599704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 90
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chrX:12309558-12309210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 70
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chrX:20340060-20339718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 76
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chrX:30133498-30133145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 55
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chrX:31252248-31252583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
22, 11
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chrX:47166054-47165710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
141, 18
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chrX:23563966-23563610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 161
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chrX:34663013-34662666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
138, 31
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chrX:44961578-44961942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
21, 55
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chrX:47046689-47046325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
22, 177
               

               
Conread position:
               
1-368
               

               
Cow position:
               
chrX:42235703-42235331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
22, 53
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chrX:1055559-1055183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
21, 30
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chrX:7351126-7351502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 93
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chrX:16996337-16996691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
21, 32
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chrX:21672382-21672760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 91
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chrX:33855402-33855025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 41
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chrX:34441621-34441255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
1-381
               

               
Cow position:
               
chrX:14955937-14955564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
141, 90
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chrX:30922012-30922377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 32
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chrX:35885899-35885527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 32
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chrX:44054632-44055010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
21, 38
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chrX:15147357-15146991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
22, 40
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chrX:24366003-24365614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
21, 58
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chrX:32820859-32821248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 40
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chrX:34411671-34412056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 73
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chrX:36060982-36061367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
21, 197
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chrX:38549279-38549654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
22, 93
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chrX:38935112-38935487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
21, 109
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chrX:46032891-46032520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
21, 55
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:4633020-4632645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
144, 21
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:8730910-8731303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 96
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:9201377-9201752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 90
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:9252347-9251954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
87, 174
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:10831666-10831272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 92
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:11633509-11633891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:11655919-11656287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
22, 94
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:12980000-12979626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 93
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:13868524-13868913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
22, 40
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:15485796-15485424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 30
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:15545725-15546090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
141, 18
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:17231565-17231946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
21, 65
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:21593114-21593500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
21, 91
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:21663139-21663504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
21, 109
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:22074631-22075004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:22812891-22813274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
21, 161
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:22921144-22921530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 154
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:25035557-25035172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 164
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:25208016-25207652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
21, 94
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:31436313-31436678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
22, 32
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:31489342-31489730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 64
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:34554559-34554933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:34792480-34792114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
22, 59
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:35542722-35543093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:36975780-36976161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:38218538-38218922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
22, 91
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:40183519-40183145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
21, 145
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:42247353-42246972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 55
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chrX:47344125-47344508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
21, 67
               

               
Conread position:
               
1-387
               

               
Cow position:
               
chrX:16541847-16541446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
21, 235
               

               
Conread position:
               
1-387
               

               
Cow position:
               
chrX:31949100-31948724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
21, 42
               

               
Conread position:
               
1-387
               

               
Cow position:
               
chrX:47873511-47873126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
21, 58
               

               
Conread position:
               
1-388
               

               
Cow position:
               
chrX:27174826-27175211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
139, 22
               

               
Conread position:
               
1-388
               

               
Cow position:
               
chrX:29602002-29601618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 55
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chrX:47211017-47210623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 99
               

               
Conread position:
               
2-140
               

               
Cow position:
               
chrX:4123667-4123802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
84, 20
               

               
Conread position:
               
2-157
               

               
Cow position:
               
chrX:41403804-41403963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
2-157
               

               
Cow position:
               
chrX:41410352-41410511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
2-163
               

               
Cow position:
               
chrX:35042051-35042214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 91
               

               
Conread position:
               
2-173
               

               
Cow position:
               
chrX:14003813-14003640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
21, 89
               

               
Conread position:
               
2-214
               

               
Cow position:
               
chrX:41743744-41743952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
21, 29
               

               
Conread position:
               
2-215
               

               
Cow position:
               
chrX:42874809-42875022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
21, 187
               

               
Conread position:
               
2-219
               

               
Cow position:
               
chrX:26285811-26286024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 29
               

               
Conread position:
               
2-224
               

               
Cow position:
               
chrX:36961467-36961689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
21, 169
               

               
Conread position:
               
2-230
               

               
Cow position:
               
chrX:41167133-41166908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
21, 29
               

               
Conread position:
               
2-261
               

               
Cow position:
               
chrX:42507815-42507563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 31
               

               
Conread position:
               
2-272
               

               
Cow position:
               
chrX:26440948-26440689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
21, 54
               

               
Conread position:
               
2-293
               

               
Cow position:
               
chrX:45404002-45403708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
20, 168
               

               
Conread position:
               
2-293
               

               
Cow position:
               
chrX:48652895-48652604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
21, 163
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chrX:30543459-30543148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 90
               

               
Conread position:
               
2-325
               

               
Cow position:
               
chrX:31442990-31442679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
21, 29
               

               
Conread position:
               
2-326
               

               
Cow position:
               
chrX:22387416-22387100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
22, 91
               

               
Conread position:
               
2-338
               

               
Cow position:
               
chrX:45098943-45099290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 179
               

               
Conread position:
               
2-339
               

               
Cow position:
               
chrX:46433314-46433653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
20, 192
               

               
Conread position:
               
2-353
               

               
Cow position:
               
chrX:841990-842335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
20, 37
               

               
Conread position:
               
2-385
               

               
Cow position:
               
chrX:44192621-44192234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
21, 114
               

               
Conread position:
               
2-386
               

               
Cow position:
               
chrX:4768582-4768937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
143, 27
               

               
Conread position:
               
2-386
               

               
Cow position:
               
chrX:9770853-9770477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
20, 159
               

               
Conread position:
               
2-386
               

               
Cow position:
               
chrX:27514700-27515068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
20, 115
               

               
Conread position:
               
2-386
               

               
Cow position:
               
chrX:30963040-30962666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 21
               

               
Conread position:
               
2-386
               

               
Cow position:
               
chrX:31250221-31250599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
21, 62
               

               
Conread position:
               
2-386
               

               
Cow position:
               
chrX:32420050-32420420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 20
               

               
Conread position:
               
2-386
               

               
Cow position:
               
chrX:36283177-36283549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
22, 167
               

               
Conread position:
               
3-175
               

               
Cow position:
               
chrX:40116254-40116418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
20, 30
               

               
Conread position:
               
3-208
               

               
Cow position:
               
chrX:36250029-36249829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 36
               

               
Conread position:
               
3-263
               

               
Cow position:
               
chrX:10128837-10129095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
19, 89
               

               
Conread position:
               
3-284
               

               
Cow position:
               
chrX:2467712-2467992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 139
               

               
Conread position:
               
3-326
               

               
Cow position:
               
chrX:8797080-8797399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
20, 92
               

               
Conread position:
               
3-339
               

               
Cow position:
               
chrX:5872146-5872480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 178
               

               
Conread position:
               
3-352
               

               
Cow position:
               
chrX:24288100-24287758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
19, 92
               

               
Conread position:
               
3-375
               

               
Cow position:
               
chrX:48010427-48010803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
3-382
               

               
Cow position:
               
chrX:47484439-47484057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
19, 156
               

               
Conread position:
               
3-386
               

               
Cow position:
               
chrX:46587650-46588029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 39
               

               
Conread position:
               
3-387
               

               
Cow position:
               
chrX:7863738-7863370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
4-185
               

               
Cow position:
               
chrX:1505545-1505720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
18, 38
               

               
Conread position:
               
4-308
               

               
Cow position:
               
chrX:37232243-37232539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
18, 87
               

               
Conread position:
               
4-308
               

               
Cow position:
               
chrX:39558513-39558217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
4-321
               

               
Cow position:
               
chrX:43527337-43527653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
19, 35
               

               
Conread position:
               
4-337
               

               
Cow position:
               
chrX:6278672-6278337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 89
               

               
Conread position:
               
4-368
               

               
Cow position:
               
chrX:37781284-37780920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
19, 90
               

               
Conread position:
               
4-375
               

               
Cow position:
               
chrX:9635347-9634991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
19, 29
               

               
Conread position:
               
4-375
               

               
Cow position:
               
chrX:27432085-27431723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
19, 88
               

               
Conread position:
               
4-386
               

               
Cow position:
               
chrX:13912914-13913284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
19, 35
               

               
Conread position:
               
4-386
               

               
Cow position:
               
chrX:34543620-34543995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
4-386
               

               
Cow position:
               
chrX:41879101-41878728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 33
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chrX:36314464-36314279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
12, 21
               

               
Conread position:
               
5-195
               

               
Cow position:
               
chrX:48385529-48385336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
17, 160
               

               
Conread position:
               
5-230
               

               
Cow position:
               
chrX:41992207-41991991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
17, 21
               

               
Conread position:
               
5-303
               

               
Cow position:
               
chrX:27516367-27516646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
17, 36
               

               
Conread position:
               
5-334
               

               
Cow position:
               
chrX:23514180-23513866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
19, 28
               

               
Conread position:
               
5-375
               

               
Cow position:
               
chrX:14275901-14275550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
5-386
               

               
Cow position:
               
chrX:14884127-14883748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
17, 86
               

               
Conread position:
               
5-389
               

               
Cow position:
               
chrX:44396856-44397223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
138, 23
               

               
Conread position:
               
6-374
               

               
Cow position:
               
chrX:7336664-7337040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
17, 35
               

               
Conread position:
               
6-386
               

               
Cow position:
               
chrX:38853032-38853420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
18, 36
               

               
Conread position:
               
7-223
               

               
Cow position:
               
chrX:45566470-45566672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
16, 69
               

               
Conread position:
               
7-375
               

               
Cow position:
               
chrX:41068564-41068918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
136, 16
               

               
Conread position:
               
7-386
               

               
Cow position:
               
chrX:32329994-32330380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
16, 49
               

               
Conread position:
               
7-386
               

               
Cow position:
               
chrX:38094690-38094317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 86
               

               
Conread position:
               
8-158
               

               
Cow position:
               
chrX:35388068-35387917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 83
               

               
Conread position:
               
8-382
               

               
Cow position:
               
chrX:21064122-21064487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
9-216
               

               
Cow position:
               
chrX:28157333-28157538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
14, 50
               

               
Conread position:
               
14-382
               

               
Cow position:
               
chrX:11844403-11844035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
8, 17
               

               
Conread position:
               
14-386
               

               
Cow position:
               
chrX:8869562-8869195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
9, 75
               

               
Conread position:
               
15-137
               

               
Cow position:
               
chrX:11581783-11581906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
9, 46
               

               
Conread position:
               
16-311
               

               
Cow position:
               
chrX:10959555-10959260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 81
               

               
Conread position:
               
16-312
               

               
Cow position:
               
chrX:1503179-1503463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
7, 78
               

               
Conread position:
               
17-283
               

               
Cow position:
               
chrX:48571146-48570881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
5, 17
               

               
Conread position:
               
21-263
               

               
Cow position:
               
chrX:12405539-12405294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
72, 145
               

               
Conread position:
               
21-308
               

               
Cow position:
               
chrX:47481651-47481928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
123, 16
               

               
Conread position:
               
21-312
               

               
Cow position:
               
chrX:20584170-20584464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
25, 71
               

               
Conread position:
               
21-373
               

               
Cow position:
               
chrX:5118654-5118302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
123, 69
               

               
Conread position:
               
25-208
               

               
Cow position:
               
chrX:10278666-10278843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
68, 29
               

               
Conread position:
               
25-312
               

               
Cow position:
               
chrX:41122922-41123195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
25-346
               

               
Cow position:
               
chrX:878522-878214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
25-386
               

               
Cow position:
               
chrX:27227974-27228338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 152
               

               
Conread position:
               
28-326
               

               
Cow position:
               
chrX:42873247-42873535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
241, 41
               

               
Conread position:
               
30-225
               

               
Cow position:
               
chrX:35681197-35681391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
113, 11
               

               
Conread position:
               
30-280
               

               
Cow position:
               
chrX:27685104-27685353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
112, 63
               

               
Conread position:
               
33-217
               

               
Cow position:
               
chrX:4091507-4091681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
110, 15
               

               
Conread position:
               
33-247
               

               
Cow position:
               
chrX:13785503-13785288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
112, 60
               

               
Conread position:
               
33-318
               

               
Cow position:
               
chrX:22454232-22453957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
33-327
               

               
Cow position:
               
chrX:11614559-11614843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
104, 58
               

               
Conread position:
               
33-373
               

               
Cow position:
               
chrX:48646740-48646411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
33-386
               

               
Cow position:
               
chrX:34313893-34314230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
112, 35
               

               
Conread position:
               
33-386
               

               
Cow position:
               
chrX:34454524-34454868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
111, 90
               

               
Conread position:
               
34-178
               

               
Cow position:
               
chrX:35284480-35284625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
109, 59
               

               
Conread position:
               
34-308
               

               
Cow position:
               
chrX:40557820-40557547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
34-312
               

               
Cow position:
               
chrX:29680399-29680125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
34-338
               

               
Cow position:
               
chrX:616401-616096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
34-375
               

               
Cow position:
               
chrX:18204602-18204265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
109, 60
               

               
Conread position:
               
34-385
               

               
Cow position:
               
chrX:29723602-29723959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
109, 57
               

               
Conread position:
               
34-386
               

               
Cow position:
               
chrX:25816039-25815690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
111, 58
               

               
Conread position:
               
34-386
               

               
Cow position:
               
chrX:27705445-27705796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
51, 15
               

               
Conread position:
               
35-324
               

               
Cow position:
               
chrX:161278-161559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
23, 40
               

               
Conread position:
               
36-338
               

               
Cow position:
               
chrX:11085194-11084901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
109, 56
               

               
Conread position:
               
37-200
               

               
Cow position:
               
chrX:27269834-27269991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
37-213
               

               
Cow position:
               
chrX:31987003-31986826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
56, 31
               

               
Conread position:
               
37-306
               

               
Cow position:
               
chrX:15814951-15815212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
105, 53
               

               
Conread position:
               
37-326
               

               
Cow position:
               
chrX:38227231-38226960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
107, 84
               

               
Conread position:
               
37-327
               

               
Cow position:
               
chrX:7710679-7710388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
51, 134
               

               
Conread position:
               
37-387
               

               
Cow position:
               
chrX:36393483-36393131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
105, 171
               

               
Conread position:
               
38-216
               

               
Cow position:
               
chrX:6234588-6234410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
104, 53
               

               
Conread position:
               
38-327
               

               
Cow position:
               
chrX:45113485-45113773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
107, 22
               

               
Conread position:
               
38-375
               

               
Cow position:
               
chrX:870305-869984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
104, 71
               

               
Conread position:
               
38-385
               

               
Cow position:
               
chrX:41027022-41027368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 51
               

               
Conread position:
               
38-388
               

               
Cow position:
               
chrX:31294693-31294358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
5, 53
               

               
Conread position:
               
41-175
               

               
Cow position:
               
chrX:35969217-35969085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 11
               

               
Conread position:
               
41-306
               

               
Cow position:
               
chrX:7571772-7572037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
101, 48
               

               
Conread position:
               
41-335
               

               
Cow position:
               
chrX:41870939-41871225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 51
               

               
Conread position:
               
41-338
               

               
Cow position:
               
chrX:3489023-3488729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
100, 49
               

               
Conread position:
               
42-310
               

               
Cow position:
               
chrX:19273854-19273573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
21, 49
               

               
Conread position:
               
42-325
               

               
Cow position:
               
chrX:1499534-1499816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
101, 51
               

               
Conread position:
               
42-338
               

               
Cow position:
               
chrX:9365806-9365514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
100, 48
               

               
Conread position:
               
42-386
               

               
Cow position:
               
chrX:31729312-31729646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
101, 49
               

               
Conread position:
               
42-386
               

               
Cow position:
               
chrX:45976789-45977133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
94, 50
               

               
Conread position:
               
43-331
               

               
Cow position:
               
chrX:6690383-6690103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
102, 24
               

               
Conread position:
               
43-352
               

               
Cow position:
               
chrX:45875261-45875567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
43-388
               

               
Cow position:
               
chrX:6488446-6488776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
88, 48
               

               
Conread position:
               
44-216
               

               
Cow position:
               
chrX:17497957-17498125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
101, 11
               

               
Conread position:
               
44-230
               

               
Cow position:
               
chrX:28845706-28845887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
99, 11
               

               
Conread position:
               
44-307
               

               
Cow position:
               
chrX:1514536-1514288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
44-312
               

               
Cow position:
               
chrX:29120917-29121183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
101, 48
               

               
Conread position:
               
44-326
               

               
Cow position:
               
chrX:38728608-38728884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
101, 47
               

               
Conread position:
               
44-338
               

               
Cow position:
               
chrX:5017543-5017263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
99, 46
               

               
Conread position:
               
46-262
               

               
Cow position:
               
chrX:16055084-16055293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
93, 46
               

               
Conread position:
               
46-375
               

               
Cow position:
               
chrX:34222586-34222911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
47, 14
               

               
Conread position:
               
48-386
               

               
Cow position:
               
chrX:40826880-40826541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
23, 114
               

               
Conread position:
               
49-382
               

               
Cow position:
               
chrX:27946183-27945848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
95, 120
               

               
Conread position:
               
50-225
               

               
Cow position:
               
chrX:9155131-9155308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
97, 118
               

               
Conread position:
               
51-386
               

               
Cow position:
               
chrX:40320283-40320616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
53-385
               

               
Cow position:
               
chrX:4403194-4403526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
164, 38
               

               
Conread position:
               
55-326
               

               
Cow position:
               
chrX:5679684-5679422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
177, 36
               

               
Conread position:
               
55-375
               

               
Cow position:
               
chrX:46546995-46546676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
39, 68
               

               
Conread position:
               
56-386
               

               
Cow position:
               
chrX:26881685-26881353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
57-386
               

               
Cow position:
               
chrX:24331662-24331986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
88, 34
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chrX:6265712-6265450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
84, 19
               

               
Conread position:
               
59-386
               

               
Cow position:
               
chrX:42927933-42927621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
86, 31
               

               
Conread position:
               
60-386
               

               
Cow position:
               
chrX:9651138-9650818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
80, 30
               

               
Conread position:
               
61-263
               

               
Cow position:
               
chrX:44873673-44873474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
82, 31
               

               
Conread position:
               
62-386
               

               
Cow position:
               
chrX:17949601-17949283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
77, 99
               

               
Conread position:
               
64-310
               

               
Cow position:
               
chrX:31515060-31515308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
75, 28
               

               
Conread position:
               
69-386
               

               
Cow position:
               
chrX:12290622-12290927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
53, 24
               

               
Conread position:
               
70-346
               

               
Cow position:
               
chrX:27119596-27119866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
73, 21
               

               
Conread position:
               
71-386
               

               
Cow position:
               
chrX:10516154-10516463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
74, 19
               

               
Conread position:
               
73-338
               

               
Cow position:
               
chrX:16348670-16348409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
72, 19
               

               
Conread position:
               
73-386
               

               
Cow position:
               
chrX:21327803-21328123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
72, 130
               

               
Conread position:
               
74-330
               

               
Cow position:
               
chrX:45884079-45883817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
14, 60
               

               
Conread position:
               
75-365
               

               
Cow position:
               
chrX:40283027-40283311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
68, 16
               

               
Conread position:
               
78-369
               

               
Cow position:
               
chrX:4515582-4515880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
20, 110
               

               
Conread position:
               
81-339
               

               
Cow position:
               
chrX:29549642-29549391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
62, 93
               

               
Conread position:
               
81-386
               

               
Cow position:
               
chrX:4296914-4296615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
61, 80
               

               
Conread position:
               
82-183
               

               
Cow position:
               
chrX:25283108-25283004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
84-375
               

               
Cow position:
               
chrX:20168466-20168756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
59, 105
               

               
Conread position:
               
84-386
               

               
Cow position:
               
chrX:12095865-12095562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
59, 75
               

               
Conread position:
               
85-338
               

               
Cow position:
               
chrX:37129178-37129431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
52, 33
               

               
Conread position:
               
85-384
               

               
Cow position:
               
chrX:29050156-29050449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
60, 155
               

               
Conread position:
               
85-386
               

               
Cow position:
               
chrX:22115409-22115105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 80
               

               
Conread position:
               
85-386
               

               
Cow position:
               
chrX:27261097-27261399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
58, 116
               

               
Conread position:
               
85-386
               

               
Cow position:
               
chrX:33654932-33654634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
41, 80
               

               
Conread position:
               
85-386
               

               
Cow position:
               
chrX:34837145-34836863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
60, 33
               

               
Conread position:
               
86-386
               

               
Cow position:
               
chrX:42855365-42855672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
57, 101
               

               
Conread position:
               
87-358
               

               
Cow position:
               
chrX:33205053-33204787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
62, 84
               

               
Conread position:
               
87-386
               

               
Cow position:
               
chrX:48071072-48071371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
56, 75
               

               
Conread position:
               
88-352
               

               
Cow position:
               
chrX:40680523-40680790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
57, 110
               

               
Conread position:
               
88-385
               

               
Cow position:
               
chrX:22283744-22284047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
54, 114
               

               
Conread position:
               
92-326
               

               
Cow position:
               
chrX:23562551-23562782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
53, 71
               

               
Conread position:
               
92-387
               

               
Cow position:
               
chrX:35590841-35590548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 69
               

               
Conread position:
               
96-337
               

               
Cow position:
               
chrX:39220000-39220240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
49, 35
               

               
Conread position:
               
97-384
               

               
Cow position:
               
chrX:36866092-36866380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
48, 68
               

               
Conread position:
               
102-343
               

               
Cow position:
               
chrX:38208617-38208378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
37, 56
               

               
Conread position:
               
115-386
               

               
Cow position:
               
chrX:38321448-38321174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
30, 47
               

               
Conread position:
               
120-386
               

               
Cow position:
               
chrX:4109134-4109394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
25, 43
               

               
Conread position:
               
121-339
               

               
Cow position:
               
chrX:44339379-44339162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
24, 123
               

               
Conread position:
               
127-375
               

               
Cow position:
               
chrX:44660635-44660390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 5
               

               
Conread position:
               
135-386
               

               
Cow position:
               
chrX:45254621-45254373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
142-385
               

               
Cow position:
               
chrX:41941595-41941831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
142-386
               

               
Cow position:
               
chrX:4645943-4645705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
146-318
               

               
Cow position:
               
chrX:20743575-20743746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
86, 27
               

               
Conread position:
               
149-388
               

               
Cow position:
               
chrX:28940221-28940455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
83, 16
               

               
Conread position:
               
153-386
               

               
Cow position:
               
chrX:42836164-42836390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
154-388
               

               
Cow position:
               
chrX:32574293-32574527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
11, 194
               

               
Conread position:
               
156-386
               

               
Cow position:
               
chrX:42450033-42449804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
34, 17
               

               
Conread position:
               
157-386
               

               
Cow position:
               
chrX:35275969-35276195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
33, 17
               

               
Conread position:
               
174-386
               

               
Cow position:
               
chrX:39290357-39290564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
192, 131
               

               
Conread position:
               
175-386
               

               
Cow position:
               
chrX:27668958-27668753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
189-365
               

               
Cow position:
               
chrX:39180219-39180045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 5
               

               
Conread position:
               
204-386
               

               
Cow position:
               
chrX:2314591-2314409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
244-386
               

               
Cow position:
               
chrX:35681635-35681776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
244-388
               

               
Cow position:
               
chrX:10237845-10237702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
245-386
               

               
Cow position:
               
chrX:37867322-37867463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.