Cow genome map

Conread name: Blo2-AR038F03PBC30AF03S

Conread position: 1-154
Cow position: chr10:4184156-4184001 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 126
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 15, 54

Conread position: 1-154
Cow position: chr10:50134845-50134997 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 11, 26

Conread position: 1-177
Cow position: chr10:12486225-12486054 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 15, 41

Conread position: 1-190
Cow position: chr10:47412143-47412335 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 148, 52

Conread position: 1-199
Cow position: chr10:28152418-28152619 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 152
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 20, 41

Conread position: 1-229
Cow position: chr10:11221664-11221444 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 167
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 67, 51

Conread position: 1-234
Cow position: chr10:24132859-24133091 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 11

Conread position: 1-237
Cow position: chr10:25045728-25045956 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 171
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 19, 0

Conread position: 1-241
Cow position: chr10:6986408-6986174 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 184
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 27, 53

Conread position: 1-243
Cow position: chr10:29279404-29279165 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 179
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 20, 56

Conread position: 1-244
Cow position: chr10:20997324-20997557 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 178
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 133, 44

Conread position: 1-244
Cow position: chr10:21708941-21709173 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 178
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 20, 8

Conread position: 1-246
Cow position: chr10:24276771-24277028 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 186
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 62, 11

Conread position: 1-251
Cow position: chr10:48462379-48462628 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 17

Conread position: 1-252
Cow position: chr10:10720712-10720965 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 8

Conread position: 1-252
Cow position: chr10:60388804-60389047 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 178
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 20, 51

Conread position: 1-254
Cow position: chr10:52296458-52296207 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 56

Conread position: 1-255
Cow position: chr10:22472277-22472024 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 192
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 12, 47

Conread position: 1-256
Cow position: chr10:1976353-1976613 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 53

Conread position: 1-256
Cow position: chr10:15294328-15294074 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 187
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 22, 8

Conread position: 1-256
Cow position: chr10:24871851-24871595 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 53

Conread position: 1-256
Cow position: chr10:47543043-47542798 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 191
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 98, 41

Conread position: 1-256
Cow position: chr10:59839324-59839578 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 52

Conread position: 1-266
Cow position: chr10:15871915-15872167 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 201
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 97, 17

Conread position: 1-271
Cow position: chr10:19372376-19372635 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 193
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 97, 54

Conread position: 1-271
Cow position: chr10:51306303-51306018 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 214
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 41, 114

Conread position: 1-271
Cow position: chr10:51944320-51944055 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 19

Conread position: 1-281
Cow position: chr10:19402899-19402618 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 53

Conread position: 1-281
Cow position: chr10:62286517-62286235 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 56

Conread position: 1-284
Cow position: chr10:41626556-41626289 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 209
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 19, 46

Conread position: 2-208
Cow position: chr10:64042044-64041838 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 159
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 96, 18

Conread position: 2-224
Cow position: chr10:38370498-38370723 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 165
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 19, 31

Conread position: 2-256
Cow position: chr10:15318844-15318593 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 51

Conread position: 3-240
Cow position: chr10:2462526-2462753 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 43, 0

Conread position: 3-252
Cow position: chr10:17983143-17982894 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 16

Conread position: 3-271
Cow position: chr10:15462448-15462190 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 198
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 216, 17

Conread position: 4-223
Cow position: chr10:16414627-16414844 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 163
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 11, 23

Conread position: 4-246
Cow position: chr10:48257321-48257567 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 17, 50

Conread position: 4-250
Cow position: chr10:9798240-9798480 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 23

Conread position: 4-252
Cow position: chr10:13311688-13311443 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 15

Conread position: 4-265
Cow position: chr10:45728980-45729224 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 191
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 22, 0

Conread position: 4-271
Cow position: chr10:20095716-20095448 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 51

Conread position: 4-271
Cow position: chr10:26209295-26209569 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 19

Conread position: 5-256
Cow position: chr10:49038537-49038265 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 206
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 77, 48

Conread position: 6-171
Cow position: chr10:24781144-24780981 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 92, 47

Conread position: 6-227
Cow position: chr10:8170205-8169994 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 162
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 50, 0

Conread position: 6-255
Cow position: chr10:39228103-39227865 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 17, 48

Conread position: 6-273
Cow position: chr10:37529308-37529580 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 48

Conread position: 6-278
Cow position: chr10:43450956-43451231 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 210
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 9, 21

Conread position: 7-234
Cow position: chr10:52113716-52113936 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 7-284
Cow position: chr10:39875193-39875455 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 198
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 9, 47

Conread position: 8-187
Cow position: chr10:33732912-33733093 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 147
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 17, 46

Conread position: 8-267
Cow position: chr10:20447049-20446796 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 45

Conread position: 8-271
Cow position: chr10:61588307-61588567 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 45

Conread position: 8-273
Cow position: chr10:14975842-14976102 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 12

Conread position: 10-256
Cow position: chr10:58259566-58259808 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 23

Conread position: 11-220
Cow position: chr10:22341519-22341308 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 162
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 58, 42

Conread position: 11-246
Cow position: chr10:42745869-42745630 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 41

Conread position: 12-250
Cow position: chr10:50200665-50200419 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 182
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 66, 41

Conread position: 12-256
Cow position: chr10:60032621-60032870 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 34

Conread position: 12-271
Cow position: chr10:50332538-50332285 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 132

Conread position: 12-278
Cow position: chr10:30455899-30456167 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 200
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 84, 34

Conread position: 14-199
Cow position: chr10:25882366-25882190 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 69, 12

Conread position: 14-238
Cow position: chr10:48377693-48377921 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 12

Conread position: 14-254
Cow position: chr10:38014311-38014082 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 177
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 84, 19

Conread position: 15-250
Cow position: chr10:37287227-37287464 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 38

Conread position: 20-220
Cow position: chr10:50183106-50183304 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 160
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 78, 36

Conread position: 20-271
Cow position: chr10:54848719-54848470 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 33

Conread position: 21-225
Cow position: chr10:318754-318956 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 161
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 65, 12

Conread position: 21-264
Cow position: chr10:59675666-59675908 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 177
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 73, 20

Conread position: 21-271
Cow position: chr10:24732251-24732006 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 32

Conread position: 21-271
Cow position: chr10:34661372-34661627 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 188
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 73, 12

Conread position: 21-276
Cow position: chr10:15817851-15818109 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 35

Conread position: 21-280
Cow position: chr10:39387402-39387141 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 189
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 51, 32

Conread position: 21-281
Cow position: chr10:65423957-65424231 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 206
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 86, 32

Conread position: 22-235
Cow position: chr10:9445073-9445285 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 33

Conread position: 22-244
Cow position: chr10:48255283-48255504 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 34, 0

Conread position: 22-251
Cow position: chr10:10148595-10148358 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 76, 31

Conread position: 22-251
Cow position: chr10:21447965-21448181 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 172
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 34, 0

Conread position: 22-254
Cow position: chr10:25936184-25935952 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 180
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 5, 32

Conread position: 22-271
Cow position: chr10:34655172-34655419 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 76, 33

Conread position: 23-267
Cow position: chr10:53973787-53973545 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 182
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 75, 33

Conread position: 23-271
Cow position: chr10:31400955-31401206 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 32

Conread position: 23-271
Cow position: chr10:37818618-37818867 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 125, 10

Conread position: 23-281
Cow position: chr10:24307975-24308214 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 190
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 202, 30

Conread position: 28-258
Cow position: chr10:35731588-35731820 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 25

Conread position: 29-182
Cow position: chr10:66379782-66379933 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 57, 24

Conread position: 29-202
Cow position: chr10:60722215-60722383 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 24, 0

Conread position: 33-227
Cow position: chr10:59571830-59571633 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 154
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 65, 8

Conread position: 33-245
Cow position: chr10:45370984-45370776 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 161
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 65, 22

Conread position: 33-264
Cow position: chr10:32174661-32174437 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 176
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 65, 22

Conread position: 35-271
Cow position: chr10:29188430-29188668 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 18

Conread position: 35-280
Cow position: chr10:29628022-29628270 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 18

Conread position: 36-261
Cow position: chr10:66211365-66211595 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 168
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 59, 17

Conread position: 37-234
Cow position: chr10:23376537-23376734 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 148
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 61, 16

Conread position: 53-252
Cow position: chr10:55580353-55580551 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 89, 126

Conread position: 55-212
Cow position: chr10:9586609-9586767 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 43, 26

Conread position: 56-254
Cow position: chr10:31362300-31362500 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 165
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 42, 34

Conread position: 56-268
Cow position: chr10:17073451-17073657 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 157
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 26, 37

Conread position: 57-284
Cow position: chr10:57142305-57142539 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 168
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 41, 24

Conread position: 60-271
Cow position: chr10:55733696-55733907 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 166
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 38, 21

Conread position: 61-223
Cow position: chr10:50609444-50609279 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 37, 20

Conread position: 63-264
Cow position: chr10:28836123-28835930 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 154
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 35, 18

Conread position: 67-271
Cow position: chr10:29816489-29816280 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 160
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 26, 16

Show alignments to all cow chromosomes.