Cow genome map

Conread name: Blo2-AR038F03PBC30AF03S

Conread position: 1-142
Cow position: chr11:41175982-41176122 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 97, 54

Conread position: 1-163
Cow position: chr11:48042068-48042233 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 77, 52

Conread position: 1-176
Cow position: chr11:72375716-72375896 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 141
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 15, 54

Conread position: 1-180
Cow position: chr11:65607725-65607905 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 144
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 145, 8

Conread position: 1-188
Cow position: chr11:15772745-15772942 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 152
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 14, 47

Conread position: 1-193
Cow position: chr11:17574366-17574544 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 146
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 46, 0

Conread position: 1-228
Cow position: chr11:63516794-63516563 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 7

Conread position: 1-250
Cow position: chr11:45631793-45632046 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 53

Conread position: 1-252
Cow position: chr11:18572768-18572520 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 182
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 19, 0

Conread position: 1-252
Cow position: chr11:48474670-48474425 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 26

Conread position: 1-254
Cow position: chr11:30110929-30110686 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 192
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 151, 19

Conread position: 1-257
Cow position: chr11:18341073-18341325 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 190
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 151, 51

Conread position: 1-267
Cow position: chr11:53778583-53778314 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 52

Conread position: 1-271
Cow position: chr11:44636792-44637063 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 22

Conread position: 1-271
Cow position: chr11:83196465-83196199 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 11

Conread position: 1-281
Cow position: chr11:53130780-53130501 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 53

Conread position: 1-281
Cow position: chr11:62979457-62979163 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 53

Conread position: 1-281
Cow position: chr11:64638558-64638837 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 214
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 27, 55

Conread position: 1-284
Cow position: chr11:60301994-60302272 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 0

Conread position: 1-296
Cow position: chr11:35881887-35881585 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 97

Conread position: 2-203
Cow position: chr11:4663081-4663273 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 143
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 2-217
Cow position: chr11:2084109-2083899 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 10, 52

Conread position: 2-254
Cow position: chr11:21844168-21844418 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 185
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 96, 44

Conread position: 2-256
Cow position: chr11:11125629-11125375 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 53

Conread position: 3-219
Cow position: chr11:21819479-21819695 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 163
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 66, 50

Conread position: 3-246
Cow position: chr11:45646634-45646868 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 179
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 9, 0

Conread position: 3-266
Cow position: chr11:77766636-77766896 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 198
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 83, 69

Conread position: 4-221
Cow position: chr11:63520736-63520520 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 144, 29

Conread position: 4-251
Cow position: chr11:60470212-60470462 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 163

Conread position: 4-254
Cow position: chr11:38194119-38193866 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 49

Conread position: 4-256
Cow position: chr11:74316677-74316419 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 192
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 94, 49

Conread position: 4-271
Cow position: chr11:34963029-34962760 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 49

Conread position: 5-223
Cow position: chr11:42793009-42793230 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 163
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 141, 50

Conread position: 6-236
Cow position: chr11:36940634-36940868 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 164
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 88, 29

Conread position: 6-281
Cow position: chr11:439700-439973 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 206
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 16, 48

Conread position: 6-281
Cow position: chr11:41239307-41239586 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 29

Conread position: 7-246
Cow position: chr11:34829820-34830057 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 46

Conread position: 8-223
Cow position: chr11:66188362-66188576 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 168
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 149, 45

Conread position: 8-271
Cow position: chr11:77705715-77705462 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 195
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 124, 18

Conread position: 8-273
Cow position: chr11:2788341-2788076 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 11

Conread position: 9-237
Cow position: chr11:34032242-34032464 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 175
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 89, 44

Conread position: 9-278
Cow position: chr11:43360823-43361110 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 205
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 73, 44

Conread position: 10-212
Cow position: chr11:62808690-62808892 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 43

Conread position: 11-271
Cow position: chr11:4207269-4206996 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 190
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 151, 42

Conread position: 11-271
Cow position: chr11:58588304-58588041 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 42

Conread position: 12-243
Cow position: chr11:17227695-17227914 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 166
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 42, 0

Conread position: 12-271
Cow position: chr11:30120709-30120965 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 194
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 86, 44

Conread position: 13-233
Cow position: chr11:27746881-27746653 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 172
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 85, 70

Conread position: 13-247
Cow position: chr11:48901125-48901356 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 41

Conread position: 13-255
Cow position: chr11:29946973-29947213 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 78

Conread position: 13-255
Cow position: chr11:32609958-32609705 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 187
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 85, 40

Conread position: 13-256
Cow position: chr11:45898097-45898344 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 184
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 85, 40

Conread position: 13-271
Cow position: chr11:65495370-65495630 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 201
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 61, 40

Conread position: 14-271
Cow position: chr11:41577059-41577307 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 20-148
Cow position: chr11:15525907-15525775 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 55, 26

Conread position: 20-226
Cow position: chr11:77128601-77128411 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 165
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 33, 0

Conread position: 20-256
Cow position: chr11:41549383-41549617 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 176
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 25, 92

Conread position: 20-256
Cow position: chr11:83066443-83066208 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 78, 33

Conread position: 20-289
Cow position: chr11:27722311-27722042 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 183
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 113, 26

Conread position: 21-280
Cow position: chr11:76114599-76114341 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 25

Conread position: 22-214
Cow position: chr11:47899226-47899031 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 157
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 76, 31

Conread position: 22-229
Cow position: chr11:2917639-2917837 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 33, 0

Conread position: 22-249
Cow position: chr11:62155574-62155350 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 145

Conread position: 22-256
Cow position: chr11:16251300-16251537 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 33

Conread position: 22-271
Cow position: chr11:25387011-25386768 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 176
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 42, 33

Conread position: 23-244
Cow position: chr11:59155934-59156146 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 75, 18

Conread position: 28-256
Cow position: chr11:25165383-25165158 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 72, 25

Conread position: 28-271
Cow position: chr11:39115434-39115195 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 187
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 65, 25

Conread position: 31-251
Cow position: chr11:81138161-81137939 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 160, 22

Conread position: 32-254
Cow position: chr11:18371493-18371725 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 180
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 21, 89

Conread position: 33-197
Cow position: chr11:18591496-18591662 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 61, 23

Conread position: 33-221
Cow position: chr11:81281883-81281692 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 74, 20

Conread position: 33-237
Cow position: chr11:25337012-25336807 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 161
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 53, 20

Conread position: 33-251
Cow position: chr11:67931555-67931777 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 175
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 52, 20

Conread position: 33-255
Cow position: chr11:13191161-13190933 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 180
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 61, 19

Conread position: 33-255
Cow position: chr11:43524555-43524336 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 20

Conread position: 33-256
Cow position: chr11:10302254-10302476 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 171
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 57, 20

Conread position: 33-272
Cow position: chr11:50112125-50111888 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 21

Conread position: 33-278
Cow position: chr11:55348203-55347954 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 183
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 65, 238

Conread position: 33-284
Cow position: chr11:8525175-8525420 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 181
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 115, 25

Conread position: 35-252
Cow position: chr11:81300676-81300896 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 173
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 64, 18

Conread position: 40-259
Cow position: chr11:56796813-56797031 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 179, 16

Conread position: 46-250
Cow position: chr11:4412091-4412301 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 52, 35

Conread position: 47-265
Cow position: chr11:62016353-62016567 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 155
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 47, 43

Conread position: 47-281
Cow position: chr11:287412-287648 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 39, 56

Conread position: 51-233
Cow position: chr11:34121119-34120929 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 42, 30

Conread position: 55-246
Cow position: chr11:83043449-83043638 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 148
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 52, 26

Conread position: 55-251
Cow position: chr11:13061315-13061506 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 151
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 38, 26

Conread position: 56-227
Cow position: chr11:36647277-36647102 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 142
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 38, 34

Conread position: 56-237
Cow position: chr11:38009897-38010080 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 44, 22

Conread position: 56-256
Cow position: chr11:13040244-13040447 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 47, 78

Conread position: 62-256
Cow position: chr11:68206931-68207123 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 155, 0

Show alignments to all cow chromosomes.