Cow genome map
| Conread name: | Blo2-AR038F03PBC30AF03S |
| Conread position: | 1-178 |
| Cow position: | chr12:3906420-3906239 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 93, 52 |
| Conread position: | 1-193 |
| Cow position: | chr12:24211359-24211172 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 155, 52 |
| Conread position: | 1-240 |
| Cow position: | chr12:6164076-6164320 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 28, 56 |
| Conread position: | 1-247 |
| Cow position: | chr12:22882002-22881754 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 32, 90 |
| Conread position: | 1-252 |
| Cow position: | chr12:32391794-32391542 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 26 |
| Conread position: | 1-255 |
| Cow position: | chr12:33458095-33457844 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 20, 58 |
| Conread position: | 1-256 |
| Cow position: | chr12:35368588-35368336 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-267 |
| Cow position: | chr12:33323550-33323816 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 97, 11 |
| Conread position: | 1-268 |
| Cow position: | chr12:40910343-40910609 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 1-272 |
| Cow position: | chr12:2805103-2805367 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 97, 18 |
| Conread position: | 1-278 |
| Cow position: | chr12:12304333-12304073 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 12, 53 |
| Conread position: | 1-281 |
| Cow position: | chr12:31429622-31429890 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 13, 55 |
| Conread position: | 2-211 |
| Cow position: | chr12:29161870-29162073 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 98, 8 |
| Conread position: | 2-252 |
| Cow position: | chr12:9229537-9229785 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 21, 54 |
| Conread position: | 2-256 |
| Cow position: | chr12:730990-731232 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 2-286 |
| Cow position: | chr12:7000658-7000923 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 102, 51 |
| Conread position: | 3-294 |
| Cow position: | chr12:22260878-22261161 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 35, 53 |
| Conread position: | 4-176 |
| Cow position: | chr12:30210424-30210252 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 138, 36 |
| Conread position: | 4-246 |
| Cow position: | chr12:5714571-5714332 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 4-252 |
| Cow position: | chr12:5800978-5800735 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 12, 50 |
| Conread position: | 5-190 |
| Cow position: | chr12:40028814-40028996 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 77, 48 |
| Conread position: | 6-268 |
| Cow position: | chr12:30753665-30753408 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 103, 47 |
| Conread position: | 7-255 |
| Cow position: | chr12:15938325-15938573 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 39 |
| Conread position: | 8-254 |
| Cow position: | chr12:40110323-40110083 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 42, 66 |
| Conread position: | 8-255 |
| Cow position: | chr12:30805794-30805549 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 203, 47 |
| Conread position: | 9-256 |
| Cow position: | chr12:29411551-29411795 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 9-271 |
| Cow position: | chr12:28010959-28011221 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 47 |
| Conread position: | 10-234 |
| Cow position: | chr12:12178865-12178636 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 38, 92 |
| Conread position: | 11-278 |
| Cow position: | chr12:3568881-3568619 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 128, 21 |
| Conread position: | 11-281 |
| Cow position: | chr12:19869406-19869138 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 44 |
| Conread position: | 11-281 |
| Cow position: | chr12:21486522-21486262 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 92, 70 |
| Conread position: | 12-254 |
| Cow position: | chr12:17031551-17031316 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 86, 41 |
| Conread position: | 13-254 |
| Cow position: | chr12:24032941-24032699 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 40 |
| Conread position: | 20-247 |
| Cow position: | chr12:17982547-17982332 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 64, 52 |
| Conread position: | 20-256 |
| Cow position: | chr12:8868949-8869189 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 33 |
| Conread position: | 20-278 |
| Cow position: | chr12:20326702-20326443 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 33 |
| Conread position: | 26-265 |
| Cow position: | chr12:45814336-45814580 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 57 |
| Conread position: | 28-271 |
| Cow position: | chr12:18421005-18421248 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 26 |
| Conread position: | 29-264 |
| Cow position: | chr12:19872346-19872123 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 58, 27 |
| Conread position: | 33-252 |
| Cow position: | chr12:42160631-42160856 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 54, 20 |
| Conread position: | 33-255 |
| Cow position: | chr12:30728320-30728546 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 177 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 53, 20 |
| Conread position: | 35-220 |
| Cow position: | chr12:8710739-8710560 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 35-275 |
| Cow position: | chr12:3880339-3880586 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 47-283 |
| Cow position: | chr12:16359781-16359540 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 31, 55 |
| Conread position: | 55-266 |
| Cow position: | chr12:34148455-34148668 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 55-271 |
| Cow position: | chr12:37770770-37770549 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 56-222 |
| Cow position: | chr12:39465475-39465305 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 56-256 |
| Cow position: | chr12:18577739-18577543 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 63-250 |
| Cow position: | chr12:4593990-4593794 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 64-247 |
| Cow position: | chr12:16605767-16605944 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 42, 17 |
Show alignments to all cow chromosomes.