Cow genome map

Conread name: Blo2-AR038F03PBC30AF03S

Conread position: 1-173
Cow position: chr13:39367964-39368124 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 85, 9

Conread position: 1-185
Cow position: chr13:11643940-11644116 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 145
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 13, 46

Conread position: 1-189
Cow position: chr13:26847817-26847637 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 150
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 86, 39

Conread position: 1-193
Cow position: chr13:15991230-15991031 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 156
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 93, 19

Conread position: 1-193
Cow position: chr13:21283703-21283515 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 20, 46

Conread position: 1-206
Cow position: chr13:37592945-37592734 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 1-234
Cow position: chr13:30026110-30026345 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 179
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 11, 54

Conread position: 1-234
Cow position: chr13:54093746-54093972 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 11

Conread position: 1-245
Cow position: chr13:41155033-41154803 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 183
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 15, 53

Conread position: 1-247
Cow position: chr13:8524617-8524376 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 56

Conread position: 1-250
Cow position: chr13:21155493-21155241 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 188
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 97, 26

Conread position: 1-255
Cow position: chr13:41253621-41253866 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 22, 56

Conread position: 1-259
Cow position: chr13:43194176-43194434 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 192
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 22, 53

Conread position: 1-271
Cow position: chr13:311428-311701 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 8

Conread position: 1-271
Cow position: chr13:563142-562868 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 192
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 147, 31

Conread position: 1-271
Cow position: chr13:1042964-1042687 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 8

Conread position: 1-271
Cow position: chr13:7663421-7663160 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 197
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 97, 31

Conread position: 1-271
Cow position: chr13:17158875-17158595 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 196
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 149, 52

Conread position: 1-271
Cow position: chr13:46181793-46182049 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 203
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 95, 11

Conread position: 1-272
Cow position: chr13:38278148-38277867 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 19

Conread position: 1-281
Cow position: chr13:60430075-60429798 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 52

Conread position: 1-301
Cow position: chr13:18166733-18167026 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 52

Conread position: 2-238
Cow position: chr13:2463232-2462995 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 44

Conread position: 2-271
Cow position: chr13:20879823-20879568 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 48

Conread position: 2-278
Cow position: chr13:19178274-19178551 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 52

Conread position: 3-243
Cow position: chr13:10924911-10924665 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 185
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 82, 43

Conread position: 3-256
Cow position: chr13:13261009-13261262 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 187
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 145, 17

Conread position: 3-256
Cow position: chr13:20649983-20649733 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 44

Conread position: 4-183
Cow position: chr13:5758336-5758164 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 141
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 94, 16

Conread position: 4-221
Cow position: chr13:18172342-18172559 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 157
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 94, 29

Conread position: 4-245
Cow position: chr13:20706203-20705960 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 179
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 94, 49

Conread position: 4-256
Cow position: chr13:46458625-46458876 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 183
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 241, 51

Conread position: 4-271
Cow position: chr13:13265812-13266070 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 4-271
Cow position: chr13:36771418-36771153 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 207
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 17, 50

Conread position: 6-148
Cow position: chr13:8374767-8374626 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 6-255
Cow position: chr13:1839389-1839633 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 180
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 69, 13

Conread position: 6-319
Cow position: chr13:45023206-45022894 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 224
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 142, 35

Conread position: 7-178
Cow position: chr13:36345977-36346147 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 64, 12

Conread position: 7-218
Cow position: chr13:8245327-8245116 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 16, 45

Conread position: 7-281
Cow position: chr13:47312926-47313184 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 203
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 5, 49

Conread position: 9-240
Cow position: chr13:15869130-15869357 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 10-193
Cow position: chr13:5079214-5079034 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 88, 42

Conread position: 10-245
Cow position: chr13:24776290-24776534 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 190
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 5, 44

Conread position: 11-229
Cow position: chr13:43480067-43480288 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 161
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 87, 44

Conread position: 11-265
Cow position: chr13:17821260-17820997 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 183
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 14, 49

Conread position: 11-281
Cow position: chr13:17622294-17622565 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 29

Conread position: 12-233
Cow position: chr13:11768031-11767810 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 199, 44

Conread position: 13-278
Cow position: chr13:15446053-15446322 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 204
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 27, 40

Conread position: 14-268
Cow position: chr13:21275870-21276121 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 39

Conread position: 14-274
Cow position: chr13:12282848-12283108 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 188
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 84, 12

Conread position: 19-247
Cow position: chr13:22115723-22115948 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 182
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 59, 114

Conread position: 20-252
Cow position: chr13:26480194-26479964 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 176
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 78, 33

Conread position: 21-248
Cow position: chr13:44322924-44323149 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 174
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 118, 18

Conread position: 21-251
Cow position: chr13:890149-889930 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 166
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 57, 12

Conread position: 21-278
Cow position: chr13:2774147-2774396 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 188
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 73, 32

Conread position: 21-281
Cow position: chr13:32017506-32017242 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 32

Conread position: 21-282
Cow position: chr13:7076278-7076532 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 199
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 41, 32

Conread position: 22-241
Cow position: chr13:6060986-6060769 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 138, 24

Conread position: 22-247
Cow position: chr13:24155562-24155785 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 179
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 25, 112

Conread position: 23-271
Cow position: chr13:38329649-38329902 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 194
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 75, 10

Conread position: 27-265
Cow position: chr13:20839589-20839831 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 67, 26

Conread position: 28-211
Cow position: chr13:16834049-16833869 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 67, 130

Conread position: 28-271
Cow position: chr13:6079392-6079150 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 28

Conread position: 28-271
Cow position: chr13:18835219-18835455 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 182
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 65, 25

Conread position: 28-281
Cow position: chr13:18852107-18852353 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 185
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 79, 27

Conread position: 29-194
Cow position: chr13:47186252-47186416 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 27, 0

Conread position: 29-206
Cow position: chr13:19223673-19223853 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 69, 27

Conread position: 33-167
Cow position: chr13:20264882-20264746 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 54, 20

Conread position: 33-222
Cow position: chr13:12202398-12202585 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 146
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 60, 22

Conread position: 33-246
Cow position: chr13:54418261-54418476 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 164
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 61, 20

Conread position: 33-249
Cow position: chr13:37521348-37521133 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 60, 20

Conread position: 33-255
Cow position: chr13:54381905-54381682 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 174
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 61, 20

Conread position: 33-271
Cow position: chr13:12682511-12682274 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 178
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 115, 22

Conread position: 33-271
Cow position: chr13:21708217-21708450 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 20

Conread position: 35-218
Cow position: chr13:37803915-37804095 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 63, 20

Conread position: 35-248
Cow position: chr13:22025675-22025457 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 169
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 63, 21

Conread position: 41-281
Cow position: chr13:51821850-51821607 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 181
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 172, 12

Conread position: 46-271
Cow position: chr13:14927280-14927506 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 176
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 102, 9

Conread position: 53-252
Cow position: chr13:58719468-58719273 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 33, 50

Conread position: 55-248
Cow position: chr13:25062461-25062656 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 39, 26

Conread position: 55-256
Cow position: chr13:52922145-52922342 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 39, 23

Conread position: 56-255
Cow position: chr13:20784642-20784841 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 151
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 42, 34

Conread position: 56-271
Cow position: chr13:152008-152211 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 42, 34

Conread position: 56-279
Cow position: chr13:31813925-31814144 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 174
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 160, 97

Conread position: 58-254
Cow position: chr13:21107193-21107376 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 10, 90

Conread position: 63-240
Cow position: chr13:54331076-54331257 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 35, 18

Show alignments to all cow chromosomes.