Cow genome map
| Conread name: | Blo2-AR038F03PBC30AF03S |
| Conread position: | 1-146 |
| Cow position: | chr16:12274055-12273909 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 1-157 |
| Cow position: | chr16:50521462-50521308 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 97, 19 |
| Conread position: | 1-214 |
| Cow position: | chr16:49336213-49336000 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 96, 19 |
| Conread position: | 1-246 |
| Cow position: | chr16:54664815-54665070 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 74, 52 |
| Conread position: | 1-247 |
| Cow position: | chr16:7429364-7429118 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 13, 53 |
| Conread position: | 1-252 |
| Cow position: | chr16:15808961-15808709 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 14, 8 |
| Conread position: | 1-254 |
| Cow position: | chr16:18205945-18205704 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 97, 25 |
| Conread position: | 1-255 |
| Cow position: | chr16:9933142-9932888 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 18 |
| Conread position: | 1-264 |
| Cow position: | chr16:18353971-18354228 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 52 |
| Conread position: | 1-265 |
| Cow position: | chr16:45047644-45047900 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 97, 45 |
| Conread position: | 1-271 |
| Cow position: | chr16:42242132-42242402 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 11 |
| Conread position: | 1-271 |
| Cow position: | chr16:43276007-43275738 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 55 |
| Conread position: | 1-278 |
| Cow position: | chr16:25965489-25965216 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 208 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 15, 56 |
| Conread position: | 1-281 |
| Cow position: | chr16:4503267-4502984 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 8 |
| Conread position: | 2-161 |
| Cow position: | chr16:10650906-10651065 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 96, 51 |
| Conread position: | 2-245 |
| Cow position: | chr16:37452630-37452874 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 14, 45 |
| Conread position: | 2-248 |
| Cow position: | chr16:35623260-35623511 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 96, 10 |
| Conread position: | 2-264 |
| Cow position: | chr16:26501142-26500884 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 52 |
| Conread position: | 3-255 |
| Cow position: | chr16:13611470-13611713 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 190 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 95, 51 |
| Conread position: | 4-163 |
| Cow position: | chr16:31348784-31348942 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 20, 50 |
| Conread position: | 4-197 |
| Cow position: | chr16:42629483-42629686 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 90 |
| Conread position: | 4-243 |
| Cow position: | chr16:26649649-26649889 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 134, 19 |
| Conread position: | 4-255 |
| Cow position: | chr16:53891797-53892048 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 50, 31 |
| Conread position: | 4-256 |
| Cow position: | chr16:18757857-18758103 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 65, 49 |
| Conread position: | 4-279 |
| Cow position: | chr16:49169401-49169675 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 50 |
| Conread position: | 6-227 |
| Cow position: | chr16:23810894-23810682 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 10, 48 |
| Conread position: | 6-227 |
| Cow position: | chr16:53048536-53048311 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 10, 49 |
| Conread position: | 6-245 |
| Cow position: | chr16:47245569-47245330 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 6-254 |
| Cow position: | chr16:37117055-37116807 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 41 |
| Conread position: | 6-271 |
| Cow position: | chr16:7077763-7078022 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 7-174 |
| Cow position: | chr16:17288926-17288754 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 60, 46 |
| Conread position: | 7-212 |
| Cow position: | chr16:20633899-20634103 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 91, 48 |
| Conread position: | 7-222 |
| Cow position: | chr16:30037012-30037229 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 141, 46 |
| Conread position: | 7-274 |
| Cow position: | chr16:7542266-7542004 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 47 |
| Conread position: | 7-279 |
| Cow position: | chr16:11105531-11105255 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 141, 26 |
| Conread position: | 8-271 |
| Cow position: | chr16:24826050-24825783 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 47 |
| Conread position: | 8-271 |
| Cow position: | chr16:35188233-35187970 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 45 |
| Conread position: | 8-281 |
| Cow position: | chr16:14028649-14028917 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 90, 45 |
| Conread position: | 9-254 |
| Cow position: | chr16:48145425-48145666 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 66, 43 |
| Conread position: | 9-256 |
| Cow position: | chr16:15189159-15188929 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 44, 67 |
| Conread position: | 9-267 |
| Cow position: | chr16:5415780-5416032 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 9-281 |
| Cow position: | chr16:53627450-53627716 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 10-186 |
| Cow position: | chr16:14685414-14685588 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 143 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 11-225 |
| Cow position: | chr16:13232973-13233182 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 87, 42 |
| Conread position: | 11-251 |
| Cow position: | chr16:14754347-14754586 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 42 |
| Conread position: | 11-274 |
| Cow position: | chr16:13689640-13689376 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 82, 42 |
| Conread position: | 11-280 |
| Cow position: | chr16:29766313-29766051 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 12-163 |
| Cow position: | chr16:34153593-34153750 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 63, 31 |
| Conread position: | 12-252 |
| Cow position: | chr16:13791490-13791247 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 41 |
| Conread position: | 12-269 |
| Cow position: | chr16:4699010-4699252 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 194 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 86, 28 |
| Conread position: | 12-278 |
| Cow position: | chr16:38663735-38664001 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 33 |
| Conread position: | 13-206 |
| Cow position: | chr16:42444131-42443935 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 43, 71 |
| Conread position: | 14-247 |
| Cow position: | chr16:20025419-20025184 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 39 |
| Conread position: | 14-274 |
| Cow position: | chr16:39646517-39646273 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 72, 32 |
| Conread position: | 14-281 |
| Cow position: | chr16:4399709-4399428 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 68, 32 |
| Conread position: | 15-271 |
| Cow position: | chr16:33645983-33645730 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 18 |
| Conread position: | 20-251 |
| Cow position: | chr16:50282459-50282695 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 78, 33 |
| Conread position: | 20-271 |
| Cow position: | chr16:7499027-7498785 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 20-311 |
| Cow position: | chr16:49125562-49125846 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 33 |
| Conread position: | 21-218 |
| Cow position: | chr16:32302039-32302218 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 24 |
| Conread position: | 21-251 |
| Cow position: | chr16:39417152-39417373 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 77, 35 |
| Conread position: | 21-264 |
| Cow position: | chr16:6379142-6379389 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 134, 35 |
| Conread position: | 21-271 |
| Cow position: | chr16:12633853-12633620 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 79, 69 |
| Conread position: | 21-290 |
| Cow position: | chr16:43505837-43506104 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 77, 32 |
| Conread position: | 22-267 |
| Cow position: | chr16:51710168-51710408 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 76, 11 |
| Conread position: | 23-226 |
| Cow position: | chr16:45046587-45046389 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 7, 59 |
| Conread position: | 23-240 |
| Cow position: | chr16:13752161-13752376 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 177, 32 |
| Conread position: | 23-256 |
| Cow position: | chr16:39514114-39514349 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 75, 31 |
| Conread position: | 23-271 |
| Cow position: | chr16:40562193-40561942 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 123, 10 |
| Conread position: | 28-166 |
| Cow position: | chr16:53037665-53037802 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 65, 27 |
| Conread position: | 28-276 |
| Cow position: | chr16:51598647-51598892 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 25 |
| Conread position: | 31-179 |
| Cow position: | chr16:22808597-22808743 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 22 |
| Conread position: | 32-255 |
| Cow position: | chr16:24403695-24403462 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 33-203 |
| Cow position: | chr16:31117661-31117836 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 44, 20 |
| Conread position: | 33-280 |
| Cow position: | chr16:46752318-46752572 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 53, 20 |
| Conread position: | 34-269 |
| Cow position: | chr16:589964-590192 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 19 |
| Conread position: | 41-255 |
| Cow position: | chr16:20476483-20476264 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 59, 12 |
| Conread position: | 42-254 |
| Cow position: | chr16:25484309-25484099 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 56, 13 |
| Conread position: | 49-271 |
| Cow position: | chr16:39616681-39616460 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 53-305 |
| Cow position: | chr16:11790951-11790696 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 40, 28 |
| Conread position: | 55-254 |
| Cow position: | chr16:41752640-41752840 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 156 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 56-253 |
| Cow position: | chr16:54579101-54578901 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 56-271 |
| Cow position: | chr16:30715427-30715208 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 42, 22 |
| Conread position: | 60-228 |
| Cow position: | chr16:33235204-33235376 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 18, 45 |
| Conread position: | 68-264 |
| Cow position: | chr16:33507986-33507786 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 80, 0 |
Show alignments to all cow chromosomes.