Cow genome map
| Conread name: | Blo2-AR038F03PBC30AF03S |
| Conread position: | 1-186 |
| Cow position: | chr17:14762097-14762277 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 92, 11 |
| Conread position: | 1-205 |
| Cow position: | chr17:38362960-38363148 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-225 |
| Cow position: | chr17:10458911-10459133 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 97, 52 |
| Conread position: | 1-229 |
| Cow position: | chr17:21312784-21313006 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 171 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-240 |
| Cow position: | chr17:18884309-18884559 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 229 |
| Conread position: | 1-246 |
| Cow position: | chr17:2662449-2662191 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 84, 21 |
| Conread position: | 1-246 |
| Cow position: | chr17:21738849-21739102 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 52 |
| Conread position: | 1-251 |
| Cow position: | chr17:41289997-41290240 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 97, 8 |
| Conread position: | 1-265 |
| Cow position: | chr17:1081018-1080764 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 258, 11 |
| Conread position: | 1-267 |
| Cow position: | chr17:1493124-1493395 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 45 |
| Conread position: | 1-271 |
| Cow position: | chr17:5224427-5224160 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 54 |
| Conread position: | 1-271 |
| Cow position: | chr17:18860696-18860961 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 45 |
| Conread position: | 1-271 |
| Cow position: | chr17:20993012-20993283 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 53 |
| Conread position: | 1-275 |
| Cow position: | chr17:20780534-20780263 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 19 |
| Conread position: | 1-281 |
| Cow position: | chr17:1295546-1295826 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 17 |
| Conread position: | 1-281 |
| Cow position: | chr17:14033615-14033902 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 203 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 149, 31 |
| Conread position: | 1-283 |
| Cow position: | chr17:2810653-2810360 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 1-284 |
| Cow position: | chr17:27795673-27795393 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 26 |
| Conread position: | 3-187 |
| Cow position: | chr17:17682879-17683057 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 84, 19 |
| Conread position: | 3-224 |
| Cow position: | chr17:35311450-35311225 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 24 |
| Conread position: | 3-245 |
| Cow position: | chr17:13143665-13143907 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 51 |
| Conread position: | 4-199 |
| Cow position: | chr17:20990172-20990365 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 4-232 |
| Cow position: | chr17:44232692-44232924 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 90, 16 |
| Conread position: | 4-245 |
| Cow position: | chr17:4472794-4473020 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 4-254 |
| Cow position: | chr17:24587644-24587392 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 8 |
| Conread position: | 4-268 |
| Cow position: | chr17:21003806-21004071 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 29 |
| Conread position: | 4-271 |
| Cow position: | chr17:14003843-14003586 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 27, 51 |
| Conread position: | 4-289 |
| Cow position: | chr17:11056348-11056634 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 16 |
| Conread position: | 5-246 |
| Cow position: | chr17:25128322-25128567 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 24, 55 |
| Conread position: | 5-271 |
| Cow position: | chr17:26183245-26182979 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 47 |
| Conread position: | 6-255 |
| Cow position: | chr17:4721514-4721260 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 49 |
| Conread position: | 7-205 |
| Cow position: | chr17:24149202-24149000 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 71, 22 |
| Conread position: | 7-223 |
| Cow position: | chr17:26000138-25999921 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 16, 47 |
| Conread position: | 8-237 |
| Cow position: | chr17:32278887-32279116 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 90, 24 |
| Conread position: | 8-265 |
| Cow position: | chr17:24580278-24580537 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 18 |
| Conread position: | 10-271 |
| Cow position: | chr17:9117664-9117400 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 36 |
| Conread position: | 11-271 |
| Cow position: | chr17:8079332-8079074 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 21 |
| Conread position: | 12-229 |
| Cow position: | chr17:12059079-12059291 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 41 |
| Conread position: | 13-281 |
| Cow position: | chr17:21335681-21335953 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 19 |
| Conread position: | 14-137 |
| Cow position: | chr17:9936027-9936146 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 12 |
| Conread position: | 14-253 |
| Cow position: | chr17:27048171-27047938 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 39 |
| Conread position: | 14-254 |
| Cow position: | chr17:9778262-9778025 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 39 |
| Conread position: | 20-254 |
| Cow position: | chr17:5745246-5745469 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 34, 43 |
| Conread position: | 20-255 |
| Cow position: | chr17:11215884-11216110 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 78, 35 |
| Conread position: | 20-271 |
| Cow position: | chr17:20126620-20126378 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 128, 33 |
| Conread position: | 21-189 |
| Cow position: | chr17:25916904-25916731 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 21, 33 |
| Conread position: | 22-180 |
| Cow position: | chr17:31037375-31037532 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 76, 31 |
| Conread position: | 22-261 |
| Cow position: | chr17:15333707-15333943 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 66, 31 |
| Conread position: | 22-271 |
| Cow position: | chr17:22032685-22032926 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 81, 31 |
| Conread position: | 22-275 |
| Cow position: | chr17:12216067-12216326 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 59 |
| Conread position: | 27-217 |
| Cow position: | chr17:34207818-34208009 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 71, 26 |
| Conread position: | 27-221 |
| Cow position: | chr17:24821864-24821677 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 71, 28 |
| Conread position: | 28-203 |
| Cow position: | chr17:12591166-12590988 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 70, 25 |
| Conread position: | 28-256 |
| Cow position: | chr17:6423760-6423533 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 70, 27 |
| Conread position: | 33-163 |
| Cow position: | chr17:31581477-31581350 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 33-281 |
| Cow position: | chr17:23063710-23063459 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 63, 237 |
| Conread position: | 34-271 |
| Cow position: | chr17:1061066-1061305 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 21 |
| Conread position: | 35-248 |
| Cow position: | chr17:20835589-20835373 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 171 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 59, 18 |
| Conread position: | 35-271 |
| Cow position: | chr17:13244048-13244269 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 42-245 |
| Cow position: | chr17:3182599-3182801 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 13 |
| Conread position: | 42-254 |
| Cow position: | chr17:32554039-32554249 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 106, 11 |
| Conread position: | 46-272 |
| Cow position: | chr17:43717333-43717552 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 47-190 |
| Cow position: | chr17:1562790-1562936 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 56-254 |
| Cow position: | chr17:1358828-1359023 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 60-278 |
| Cow position: | chr17:21114982-21115197 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 38, 21 |
| Conread position: | 62-271 |
| Cow position: | chr17:26818483-26818695 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 86, 161 |
Show alignments to all cow chromosomes.