Cow genome map
| Conread name: | Blo2-AR038F03PBC30AF03S |
| Conread position: | 1-158 |
| Cow position: | chr18:18369408-18369566 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 54 |
| Conread position: | 1-174 |
| Cow position: | chr18:29188968-29188790 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 1-177 |
| Cow position: | chr18:53962643-53962461 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 14, 54 |
| Conread position: | 1-189 |
| Cow position: | chr18:15340493-15340674 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 97, 89 |
| Conread position: | 1-205 |
| Cow position: | chr18:21205315-21205116 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-219 |
| Cow position: | chr18:43283805-43284022 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 88, 46 |
| Conread position: | 1-239 |
| Cow position: | chr18:25282602-25282839 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 11 |
| Conread position: | 1-245 |
| Cow position: | chr18:54658263-54658011 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 81, 52 |
| Conread position: | 1-246 |
| Cow position: | chr18:31724925-31725175 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 15, 8 |
| Conread position: | 1-247 |
| Cow position: | chr18:51405953-51406195 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 110 |
| Conread position: | 1-264 |
| Cow position: | chr18:4182240-4182499 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 17 |
| Conread position: | 1-271 |
| Cow position: | chr18:2270552-2270819 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 52 |
| Conread position: | 1-271 |
| Cow position: | chr18:42966817-42966522 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 79, 52 |
| Conread position: | 1-280 |
| Cow position: | chr18:26286863-26286588 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 45 |
| Conread position: | 2-254 |
| Cow position: | chr18:47868415-47868156 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 197 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 47, 98 |
| Conread position: | 2-268 |
| Cow position: | chr18:17005210-17004937 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 51 |
| Conread position: | 2-281 |
| Cow position: | chr18:11867287-11867025 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 96, 18 |
| Conread position: | 3-240 |
| Cow position: | chr18:36098154-36097916 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 180 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 71, 43 |
| Conread position: | 4-225 |
| Cow position: | chr18:42432146-42432362 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 94, 21 |
| Conread position: | 4-234 |
| Cow position: | chr18:46436813-46437032 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 17, 50 |
| Conread position: | 4-251 |
| Cow position: | chr18:1144237-1144489 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 22 |
| Conread position: | 4-269 |
| Cow position: | chr18:35636396-35636664 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 17, 51 |
| Conread position: | 4-269 |
| Cow position: | chr18:37023604-37023870 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 94, 28 |
| Conread position: | 6-256 |
| Cow position: | chr18:25206241-25206493 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 16, 33 |
| Conread position: | 8-242 |
| Cow position: | chr18:48453634-48453407 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 90, 43 |
| Conread position: | 9-151 |
| Cow position: | chr18:3708973-3708825 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 11-267 |
| Cow position: | chr18:43564172-43563916 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 92, 42 |
| Conread position: | 12-251 |
| Cow position: | chr18:10517074-10516852 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 28, 41 |
| Conread position: | 12-271 |
| Cow position: | chr18:52635137-52635397 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 34 |
| Conread position: | 13-249 |
| Cow position: | chr18:50082312-50082540 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 85, 14 |
| Conread position: | 13-254 |
| Cow position: | chr18:1594000-1594228 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 205, 12 |
| Conread position: | 13-254 |
| Cow position: | chr18:11680665-11680421 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 13 |
| Conread position: | 13-267 |
| Cow position: | chr18:37002573-37002318 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 135, 20 |
| Conread position: | 14-250 |
| Cow position: | chr18:55789053-55789287 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 80, 27 |
| Conread position: | 20-217 |
| Cow position: | chr18:35582167-35582364 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 78, 33 |
| Conread position: | 20-252 |
| Cow position: | chr18:13359998-13359765 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 33 |
| Conread position: | 21-222 |
| Cow position: | chr18:3211805-3211598 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 79, 31 |
| Conread position: | 21-246 |
| Cow position: | chr18:23766481-23766707 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 125, 9 |
| Conread position: | 21-246 |
| Cow position: | chr18:56145614-56145385 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 111, 81 |
| Conread position: | 21-253 |
| Cow position: | chr18:52637587-52637827 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 57, 86 |
| Conread position: | 22-222 |
| Cow position: | chr18:29796493-29796692 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 162, 34 |
| Conread position: | 22-240 |
| Cow position: | chr18:5578238-5578019 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 126, 31 |
| Conread position: | 22-254 |
| Cow position: | chr18:29356695-29356928 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 34 |
| Conread position: | 22-254 |
| Cow position: | chr18:36478131-36477899 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 71, 33 |
| Conread position: | 22-255 |
| Cow position: | chr18:39875327-39875560 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 76, 31 |
| Conread position: | 22-257 |
| Cow position: | chr18:35076317-35076085 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 23-215 |
| Cow position: | chr18:12023704-12023893 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 26-281 |
| Cow position: | chr18:13507811-13508054 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 72, 27 |
| Conread position: | 28-264 |
| Cow position: | chr18:25647326-25647559 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 70, 25 |
| Conread position: | 29-278 |
| Cow position: | chr18:22120956-22121203 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 27 |
| Conread position: | 33-251 |
| Cow position: | chr18:42455106-42455316 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 171 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 53, 20 |
| Conread position: | 34-248 |
| Cow position: | chr18:23447161-23447375 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 19 |
| Conread position: | 38-275 |
| Cow position: | chr18:3180336-3180099 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 200, 14 |
| Conread position: | 40-229 |
| Cow position: | chr18:15613942-15614122 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 93 |
| Conread position: | 55-236 |
| Cow position: | chr18:11691508-11691691 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 38, 26 |
| Conread position: | 55-275 |
| Cow position: | chr18:15880958-15881175 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 25 |
| Conread position: | 55-284 |
| Cow position: | chr18:55782518-55782754 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 56-271 |
| Cow position: | chr18:45903995-45904208 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 57-271 |
| Cow position: | chr18:7487155-7486936 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 42, 5 |
| Conread position: | 60-273 |
| Cow position: | chr18:50637564-50637780 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 88, 210 |
| Conread position: | 67-271 |
| Cow position: | chr18:11811864-11811661 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 68-240 |
| Cow position: | chr18:56163474-56163302 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 68-254 |
| Cow position: | chr18:3422607-3422421 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 30, 22 |
Show alignments to all cow chromosomes.