Cow genome map
| Conread name: | Blo2-AR038F03PBC30AF03S |
| Conread position: | 1-140 |
| Cow position: | chr19:21816940-21816798 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 15, 54 |
| Conread position: | 1-185 |
| Cow position: | chr19:4329076-4329256 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 147, 8 |
| Conread position: | 1-229 |
| Cow position: | chr19:19919488-19919714 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 179 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 97, 11 |
| Conread position: | 1-232 |
| Cow position: | chr19:32451054-32450822 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 11 |
| Conread position: | 1-250 |
| Cow position: | chr19:29070746-29070981 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 188 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 180, 50 |
| Conread position: | 1-252 |
| Cow position: | chr19:33932175-33932417 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-254 |
| Cow position: | chr19:41024197-41023951 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 15, 8 |
| Conread position: | 1-271 |
| Cow position: | chr19:3246076-3246329 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 61, 18 |
| Conread position: | 1-271 |
| Cow position: | chr19:6417570-6417305 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 53 |
| Conread position: | 1-271 |
| Cow position: | chr19:31595274-31595004 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 52 |
| Conread position: | 1-274 |
| Cow position: | chr19:40051420-40051684 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 18 |
| Conread position: | 1-279 |
| Cow position: | chr19:2734423-2734148 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 11 |
| Conread position: | 1-281 |
| Cow position: | chr19:47727600-47727875 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 54 |
| Conread position: | 1-293 |
| Cow position: | chr19:20622627-20622345 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 2-256 |
| Cow position: | chr19:36478871-36478614 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 28, 57 |
| Conread position: | 3-155 |
| Cow position: | chr19:7884551-7884404 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 83, 50 |
| Conread position: | 3-245 |
| Cow position: | chr19:3812045-3812284 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 147, 23 |
| Conread position: | 3-254 |
| Cow position: | chr19:4503191-4502942 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 62, 38 |
| Conread position: | 3-267 |
| Cow position: | chr19:12036537-12036795 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 50 |
| Conread position: | 4-235 |
| Cow position: | chr19:37562035-37562251 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 174, 42 |
| Conread position: | 4-256 |
| Cow position: | chr19:40449987-40449752 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 73, 49 |
| Conread position: | 4-266 |
| Cow position: | chr19:729774-730020 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 4-266 |
| Cow position: | chr19:43441137-43440873 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 142, 51 |
| Conread position: | 4-271 |
| Cow position: | chr19:38392773-38392502 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 89, 52 |
| Conread position: | 5-165 |
| Cow position: | chr19:4722066-4722224 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 77, 50 |
| Conread position: | 5-232 |
| Cow position: | chr19:13390882-13390664 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 81, 48 |
| Conread position: | 5-269 |
| Cow position: | chr19:13129841-13129598 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 93, 18 |
| Conread position: | 5-271 |
| Cow position: | chr19:7543379-7543127 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 10, 49 |
| Conread position: | 5-288 |
| Cow position: | chr19:16694072-16694359 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 48 |
| Conread position: | 6-213 |
| Cow position: | chr19:35762283-35762496 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 23, 41 |
| Conread position: | 6-236 |
| Cow position: | chr19:3621398-3621168 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 92, 16 |
| Conread position: | 6-246 |
| Cow position: | chr19:10213636-10213401 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 6-271 |
| Cow position: | chr19:39576600-39576864 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 17, 48 |
| Conread position: | 8-266 |
| Cow position: | chr19:7637271-7637526 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 155, 38 |
| Conread position: | 10-250 |
| Cow position: | chr19:17273764-17273994 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 90, 43 |
| Conread position: | 11-223 |
| Cow position: | chr19:34001171-34000963 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 87, 45 |
| Conread position: | 12-188 |
| Cow position: | chr19:43292014-43291836 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 66, 14 |
| Conread position: | 12-251 |
| Cow position: | chr19:29627417-29627649 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 67, 14 |
| Conread position: | 12-272 |
| Cow position: | chr19:22765585-22765321 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 44 |
| Conread position: | 13-293 |
| Cow position: | chr19:2735007-2735295 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 85, 41 |
| Conread position: | 14-209 |
| Cow position: | chr19:22134183-22134377 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 77, 42 |
| Conread position: | 15-281 |
| Cow position: | chr19:48409471-48409209 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 235, 38 |
| Conread position: | 20-245 |
| Cow position: | chr19:56063477-56063698 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 78, 70 |
| Conread position: | 21-185 |
| Cow position: | chr19:25769618-25769452 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 77, 21 |
| Conread position: | 21-240 |
| Cow position: | chr19:17795852-17795632 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 8, 33 |
| Conread position: | 21-254 |
| Cow position: | chr19:11376451-11376683 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 77, 12 |
| Conread position: | 22-252 |
| Cow position: | chr19:3084255-3084483 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 53, 34 |
| Conread position: | 22-254 |
| Cow position: | chr19:19661999-19661764 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 128, 34 |
| Conread position: | 22-268 |
| Cow position: | chr19:42240338-42240583 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 31 |
| Conread position: | 22-280 |
| Cow position: | chr19:24144974-24144715 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 124, 33 |
| Conread position: | 23-212 |
| Cow position: | chr19:11758650-11758837 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 7, 34 |
| Conread position: | 26-229 |
| Cow position: | chr19:26976112-26976300 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 72, 29 |
| Conread position: | 28-243 |
| Cow position: | chr19:21378524-21378733 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 195, 26 |
| Conread position: | 28-246 |
| Cow position: | chr19:33033494-33033716 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 70, 27 |
| Conread position: | 28-271 |
| Cow position: | chr19:34955746-34955992 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 122, 25 |
| Conread position: | 29-196 |
| Cow position: | chr19:24137208-24137038 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 69, 24 |
| Conread position: | 29-271 |
| Cow position: | chr19:18788157-18788396 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 51, 29 |
| Conread position: | 33-224 |
| Cow position: | chr19:10706229-10706034 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 60, 26 |
| Conread position: | 33-229 |
| Cow position: | chr19:9209456-9209249 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 36-254 |
| Cow position: | chr19:54666712-54666935 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 36-281 |
| Cow position: | chr19:23005421-23005672 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 17 |
| Conread position: | 42-245 |
| Cow position: | chr19:38637872-38638070 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 56, 11 |
| Conread position: | 47-249 |
| Cow position: | chr19:50562604-50562413 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 51, 37 |
| Conread position: | 56-253 |
| Cow position: | chr19:24358309-24358500 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 56-254 |
| Cow position: | chr19:7492355-7492161 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 183, 97 |
| Conread position: | 56-254 |
| Cow position: | chr19:30232649-30232455 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 56-283 |
| Cow position: | chr19:5648733-5648960 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 45, 9 |
| Conread position: | 58-244 |
| Cow position: | chr19:33882242-33882425 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 40, 32 |
| Conread position: | 60-256 |
| Cow position: | chr19:52381446-52381249 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 102 |
| Conread position: | 60-281 |
| Cow position: | chr19:25999546-25999328 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 38, 30 |
Show alignments to all cow chromosomes.