Cow genome map

Conread name: Blo2-AR038F03PBC30AF03S

Conread position: 1-141
Cow position: chr2:66563246-66563386 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 96, 25

Conread position: 1-181
Cow position: chr2:26851150-26850969 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 143
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 20, 56

Conread position: 1-185
Cow position: chr2:37424111-37424304 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 146
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 27, 0

Conread position: 1-222
Cow position: chr2:80963661-80963879 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 8

Conread position: 1-225
Cow position: chr2:15250167-15249946 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 174
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 15, 54

Conread position: 1-225
Cow position: chr2:23847840-23848057 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 166
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 19, 54

Conread position: 1-226
Cow position: chr2:38272179-38272392 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 171
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 77, 52

Conread position: 1-237
Cow position: chr2:49467614-49467370 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 183
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 75, 46

Conread position: 1-252
Cow position: chr2:51594750-51594501 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 55

Conread position: 1-254
Cow position: chr2:32416876-32417125 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 19

Conread position: 1-259
Cow position: chr2:30642678-30642940 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 11

Conread position: 1-267
Cow position: chr2:39384889-39385142 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 201
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 81, 18

Conread position: 1-268
Cow position: chr2:42255420-42255151 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 11

Conread position: 1-272
Cow position: chr2:19212070-19212327 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 25

Conread position: 1-274
Cow position: chr2:80116084-80115820 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 52

Conread position: 2-184
Cow position: chr2:5130470-5130645 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 14, 25

Conread position: 2-223
Cow position: chr2:13604453-13604230 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 165
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 146, 54

Conread position: 2-256
Cow position: chr2:1303933-1303685 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 18

Conread position: 2-269
Cow position: chr2:78116362-78116636 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 203
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 70, 18

Conread position: 2-274
Cow position: chr2:39815300-39815574 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 10

Conread position: 3-233
Cow position: chr2:46331044-46330811 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 171
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 95, 50

Conread position: 3-243
Cow position: chr2:36436187-36435946 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 178
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 147, 30

Conread position: 3-253
Cow position: chr2:48617965-48617713 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 182
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 145, 7

Conread position: 3-254
Cow position: chr2:62685621-62685368 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 184
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 20, 51

Conread position: 4-142
Cow position: chr2:76764721-76764858 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 103
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 4-227
Cow position: chr2:36105249-36105031 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 163
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 22, 0

Conread position: 4-273
Cow position: chr2:13467679-13467415 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 63

Conread position: 5-189
Cow position: chr2:4655115-4655301 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 93, 28

Conread position: 5-222
Cow position: chr2:36017433-36017648 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 159
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 90, 60

Conread position: 6-186
Cow position: chr2:1638584-1638400 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 17, 48

Conread position: 6-220
Cow position: chr2:68716688-68716901 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 88, 47

Conread position: 6-246
Cow position: chr2:6356400-6356645 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 172
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 46, 27

Conread position: 6-248
Cow position: chr2:43790080-43789858 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 92, 49

Conread position: 6-256
Cow position: chr2:14349765-14349527 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 183
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 92, 19

Conread position: 6-284
Cow position: chr2:49608572-49608296 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 48

Conread position: 7-252
Cow position: chr2:67596042-67596281 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 188
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 79, 39

Conread position: 8-258
Cow position: chr2:85339482-85339730 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 192
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 90, 46

Conread position: 9-208
Cow position: chr2:47119606-47119405 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 141
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 124, 47

Conread position: 9-222
Cow position: chr2:26042262-26042473 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 14, 48

Conread position: 9-281
Cow position: chr2:81927832-81927558 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 204
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 89, 44

Conread position: 9-283
Cow position: chr2:47066600-47066875 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 197
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 19, 43

Conread position: 10-229
Cow position: chr2:62644567-62644358 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 164
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 5, 44

Conread position: 11-189
Cow position: chr2:41019239-41019418 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 140
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 82, 16

Conread position: 11-244
Cow position: chr2:80797645-80797419 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 176
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 42, 0

Conread position: 11-264
Cow position: chr2:36007610-36007852 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 185
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 21, 0

Conread position: 12-178
Cow position: chr2:70495248-70495081 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 119, 43

Conread position: 12-254
Cow position: chr2:66480213-66480439 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 182
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 86, 41

Conread position: 12-281
Cow position: chr2:45259108-45259371 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 196
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 261, 41

Conread position: 13-268
Cow position: chr2:46170900-46171154 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 40

Conread position: 13-271
Cow position: chr2:14854289-14854040 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 40

Conread position: 13-271
Cow position: chr2:39662675-39662415 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 40

Conread position: 14-206
Cow position: chr2:82647847-82648037 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 145
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 67, 42

Conread position: 14-244
Cow position: chr2:80839162-80839386 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 173
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 80, 41

Conread position: 14-256
Cow position: chr2:77378220-77377968 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 181
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 13, 42

Conread position: 20-144
Cow position: chr2:41622448-41622327 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 68, 33

Conread position: 20-183
Cow position: chr2:17493349-17493518 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 20, 36

Conread position: 20-189
Cow position: chr2:16505508-16505678 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 78, 33

Conread position: 20-221
Cow position: chr2:16428434-16428634 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 168
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 66, 33

Conread position: 20-251
Cow position: chr2:333126-333340 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 173
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 78, 31

Conread position: 20-256
Cow position: chr2:4273302-4273538 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 178
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 78, 33

Conread position: 20-271
Cow position: chr2:23270962-23271212 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 184
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 42, 33

Conread position: 20-278
Cow position: chr2:36963491-36963243 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 32

Conread position: 20-285
Cow position: chr2:47008373-47008642 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 36

Conread position: 21-273
Cow position: chr2:51638523-51638259 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 33

Conread position: 22-192
Cow position: chr2:46353529-46353698 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 31, 0

Conread position: 22-224
Cow position: chr2:38362403-38362608 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 152
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 76, 31

Conread position: 22-268
Cow position: chr2:44170523-44170276 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 33

Conread position: 23-198
Cow position: chr2:44051274-44051093 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 100, 30

Conread position: 23-236
Cow position: chr2:17967065-17967282 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 170
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 75, 33

Conread position: 25-256
Cow position: chr2:42599894-42599661 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 180
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 76, 30

Conread position: 26-256
Cow position: chr2:47138802-47138569 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 170
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 72, 27

Conread position: 27-291
Cow position: chr2:61974759-61974490 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 196
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 66, 26

Conread position: 28-254
Cow position: chr2:46189139-46189356 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 172
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 70, 27

Conread position: 28-281
Cow position: chr2:45499243-45499492 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 25

Conread position: 31-281
Cow position: chr2:14884240-14883988 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 22

Conread position: 32-223
Cow position: chr2:15329346-15329167 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 146
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 61, 21

Conread position: 33-216
Cow position: chr2:47808683-47808501 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 148
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 64, 18

Conread position: 33-252
Cow position: chr2:71163760-71163976 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 151
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 65, 13

Conread position: 33-256
Cow position: chr2:42927493-42927719 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 23

Conread position: 33-268
Cow position: chr2:68084468-68084234 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 20

Conread position: 39-228
Cow position: chr2:25597547-25597733 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 143
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 182, 14

Conread position: 44-238
Cow position: chr2:1203629-1203430 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 151
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 50, 40

Conread position: 48-267
Cow position: chr2:53575044-53574829 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 172
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 52, 36

Conread position: 53-240
Cow position: chr2:60956308-60956123 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 146
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 163, 0

Conread position: 53-240
Cow position: chr2:66403992-66404180 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 152
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 41, 37

Conread position: 55-271
Cow position: chr2:76969240-76969461 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 172
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 45, 26

Conread position: 56-201
Cow position: chr2:31529444-31529299 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 42, 22

Conread position: 56-281
Cow position: chr2:1095831-1095611 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 168
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 44, 25

Conread position: 59-236
Cow position: chr2:53851365-53851185 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 143
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 41, 22

Conread position: 61-271
Cow position: chr2:75561767-75561554 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 163
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 87, 159

Conread position: 62-271
Cow position: chr2:6539309-6539520 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 162
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 36, 19

Conread position: 67-240
Cow position: chr2:19287156-19287329 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 33, 14

Conread position: 67-271
Cow position: chr2:41710797-41710598 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 157
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 65, 0

Show alignments to all cow chromosomes.