Cow genome map
| Conread name: | Blo2-AR038F03PBC30AF03S |
| Conread position: | 1-216 |
| Cow position: | chr20:37165741-37165540 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 85, 19 |
| Conread position: | 1-224 |
| Cow position: | chr20:27407849-27408069 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 147, 19 |
| Conread position: | 1-252 |
| Cow position: | chr20:22704322-22704066 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 54 |
| Conread position: | 1-255 |
| Cow position: | chr20:19238398-19238655 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 14, 57 |
| Conread position: | 1-260 |
| Cow position: | chr20:37200389-37200130 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 203 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 20, 54 |
| Conread position: | 1-268 |
| Cow position: | chr20:6240493-6240767 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 54 |
| Conread position: | 1-268 |
| Cow position: | chr20:7659190-7659447 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 52 |
| Conread position: | 1-271 |
| Cow position: | chr20:3599368-3599633 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 21 |
| Conread position: | 1-271 |
| Cow position: | chr20:9473585-9473855 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 46 |
| Conread position: | 1-271 |
| Cow position: | chr20:19410334-19410606 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 206 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 22, 54 |
| Conread position: | 1-272 |
| Cow position: | chr20:22313133-22313402 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 1-278 |
| Cow position: | chr20:10469093-10468824 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 31 |
| Conread position: | 1-281 |
| Cow position: | chr20:13876675-13876961 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 15, 56 |
| Conread position: | 2-199 |
| Cow position: | chr20:28831997-28831794 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 14, 52 |
| Conread position: | 2-255 |
| Cow position: | chr20:21345455-21345181 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 81, 51 |
| Conread position: | 2-256 |
| Cow position: | chr20:21372334-21372089 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 28, 18 |
| Conread position: | 4-214 |
| Cow position: | chr20:14980487-14980698 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 144, 86 |
| Conread position: | 4-249 |
| Cow position: | chr20:3781401-3781646 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 94, 49 |
| Conread position: | 4-252 |
| Cow position: | chr20:34597075-34597330 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 78, 49 |
| Conread position: | 4-281 |
| Cow position: | chr20:13967234-13967512 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 49 |
| Conread position: | 6-167 |
| Cow position: | chr20:41089770-41089931 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 16, 48 |
| Conread position: | 6-189 |
| Cow position: | chr20:18837133-18837320 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 142, 47 |
| Conread position: | 6-214 |
| Cow position: | chr20:11864107-11864320 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 6-269 |
| Cow position: | chr20:6054492-6054751 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 40 |
| Conread position: | 7-277 |
| Cow position: | chr20:30817558-30817290 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 47 |
| Conread position: | 9-299 |
| Cow position: | chr20:38578744-38579024 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 89, 11 |
| Conread position: | 10-256 |
| Cow position: | chr20:22959324-22959567 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 37 |
| Conread position: | 10-268 |
| Cow position: | chr20:41028508-41028250 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 76, 16 |
| Conread position: | 10-271 |
| Cow position: | chr20:6096473-6096726 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 44 |
| Conread position: | 13-145 |
| Cow position: | chr20:11188782-11188920 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 62, 40 |
| Conread position: | 13-272 |
| Cow position: | chr20:33532322-33532068 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 193 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 82, 40 |
| Conread position: | 14-271 |
| Cow position: | chr20:12334391-12334141 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 26, 40 |
| Conread position: | 14-274 |
| Cow position: | chr20:20312731-20312981 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 39 |
| Conread position: | 15-268 |
| Cow position: | chr20:19751322-19751073 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 15-281 |
| Cow position: | chr20:9537151-9536884 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 37 |
| Conread position: | 20-185 |
| Cow position: | chr20:34221491-34221319 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 80, 58 |
| Conread position: | 20-193 |
| Cow position: | chr20:13652357-13652520 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 66, 34 |
| Conread position: | 20-254 |
| Cow position: | chr20:14735685-14735453 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 33 |
| Conread position: | 20-254 |
| Cow position: | chr20:14831606-14831837 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 191, 6 |
| Conread position: | 20-268 |
| Cow position: | chr20:17733765-17734011 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 58, 36 |
| Conread position: | 22-238 |
| Cow position: | chr20:36331417-36331636 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 76, 33 |
| Conread position: | 22-272 |
| Cow position: | chr20:19363358-19363604 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 76, 32 |
| Conread position: | 32-241 |
| Cow position: | chr20:35760667-35760460 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 66, 23 |
| Conread position: | 33-203 |
| Cow position: | chr20:3569070-3569233 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 53, 20 |
| Conread position: | 33-271 |
| Cow position: | chr20:24398637-24398873 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 43, 74 |
| Conread position: | 41-281 |
| Cow position: | chr20:20352925-20353167 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 42, 66 |
| Conread position: | 42-281 |
| Cow position: | chr20:41977404-41977169 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 15, 95 |
| Conread position: | 46-264 |
| Cow position: | chr20:25009655-25009877 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 75, 35 |
| Conread position: | 49-247 |
| Cow position: | chr20:13752221-13752024 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 49, 34 |
| Conread position: | 55-203 |
| Cow position: | chr20:16935324-16935476 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 56-225 |
| Cow position: | chr20:23846695-23846867 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 92, 73 |
| Conread position: | 57-271 |
| Cow position: | chr20:10235829-10235611 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 60-176 |
| Cow position: | chr20:9730056-9729939 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 38, 30 |
Show alignments to all cow chromosomes.