Cow genome map
| Conread name: | Blo2-AR038F03PBC30AF03S |
| Conread position: | 1-162 |
| Cow position: | chr21:34722740-34722901 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 143, 11 |
| Conread position: | 1-171 |
| Cow position: | chr21:36789843-36789673 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 15, 55 |
| Conread position: | 1-189 |
| Cow position: | chr21:12461919-12462109 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 15, 54 |
| Conread position: | 1-190 |
| Cow position: | chr21:957721-957528 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 80, 52 |
| Conread position: | 1-216 |
| Cow position: | chr21:18064865-18065089 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 24, 11 |
| Conread position: | 1-217 |
| Cow position: | chr21:28244519-28244310 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 15, 52 |
| Conread position: | 1-225 |
| Cow position: | chr21:27344354-27344577 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 52 |
| Conread position: | 1-226 |
| Cow position: | chr21:28989658-28989440 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 13, 51 |
| Conread position: | 1-229 |
| Cow position: | chr21:17183970-17183743 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 77, 11 |
| Conread position: | 1-233 |
| Cow position: | chr21:15911451-15911218 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 55 |
| Conread position: | 1-234 |
| Cow position: | chr21:30607039-30607271 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 53 |
| Conread position: | 1-240 |
| Cow position: | chr21:47764069-47764301 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 102, 11 |
| Conread position: | 1-241 |
| Cow position: | chr21:14452282-14452040 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 93, 31 |
| Conread position: | 1-248 |
| Cow position: | chr21:10004837-10005083 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 11, 46 |
| Conread position: | 1-250 |
| Cow position: | chr21:395916-395677 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 189 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 97, 18 |
| Conread position: | 1-256 |
| Cow position: | chr21:30848898-30849144 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 15, 8 |
| Conread position: | 1-268 |
| Cow position: | chr21:15445023-15445296 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 46 |
| Conread position: | 1-271 |
| Cow position: | chr21:39401641-39401380 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 8 |
| Conread position: | 1-271 |
| Cow position: | chr21:42913695-42913966 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 53 |
| Conread position: | 1-276 |
| Cow position: | chr21:15584371-15584628 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 203 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-281 |
| Cow position: | chr21:27863465-27863751 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 46 |
| Conread position: | 1-300 |
| Cow position: | chr21:2785728-2786028 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 143, 45 |
| Conread position: | 2-246 |
| Cow position: | chr21:42135572-42135819 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 96, 51 |
| Conread position: | 2-250 |
| Cow position: | chr21:28882184-28881943 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 195 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 10, 52 |
| Conread position: | 2-254 |
| Cow position: | chr21:29002111-29002365 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 92, 5 |
| Conread position: | 2-269 |
| Cow position: | chr21:5597200-5596928 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 202 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 21, 56 |
| Conread position: | 3-183 |
| Cow position: | chr21:42131547-42131738 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 13, 54 |
| Conread position: | 3-268 |
| Cow position: | chr21:24222491-24222756 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 82, 55 |
| Conread position: | 4-198 |
| Cow position: | chr21:45439193-45439397 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 74, 42 |
| Conread position: | 4-206 |
| Cow position: | chr21:10633594-10633796 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 94, 49 |
| Conread position: | 4-233 |
| Cow position: | chr21:13488569-13488337 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 19, 53 |
| Conread position: | 4-256 |
| Cow position: | chr21:29485025-29484779 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 49 |
| Conread position: | 4-267 |
| Cow position: | chr21:34390932-34391186 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 14 |
| Conread position: | 4-268 |
| Cow position: | chr21:26647965-26648221 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 116, 49 |
| Conread position: | 6-197 |
| Cow position: | chr21:18041804-18041989 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 6-256 |
| Cow position: | chr21:12960855-12961104 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 191 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 16, 42 |
| Conread position: | 6-281 |
| Cow position: | chr21:16187768-16188028 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 92, 14 |
| Conread position: | 7-240 |
| Cow position: | chr21:13365383-13365152 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 49, 75 |
| Conread position: | 7-242 |
| Cow position: | chr21:18844972-18845206 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 52, 46 |
| Conread position: | 7-246 |
| Cow position: | chr21:46242195-46242434 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 151, 34 |
| Conread position: | 7-271 |
| Cow position: | chr21:82121-81850 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 81, 26 |
| Conread position: | 7-283 |
| Cow position: | chr21:11644926-11645202 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 197 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 9, 47 |
| Conread position: | 8-248 |
| Cow position: | chr21:4281830-4282065 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 7, 33 |
| Conread position: | 8-271 |
| Cow position: | chr21:20925464-20925726 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 44 |
| Conread position: | 9-154 |
| Cow position: | chr21:10561543-10561687 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 9-212 |
| Cow position: | chr21:28617630-28617429 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 89, 43 |
| Conread position: | 10-256 |
| Cow position: | chr21:33791326-33791574 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 43 |
| Conread position: | 11-187 |
| Cow position: | chr21:29978721-29978899 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 75, 43 |
| Conread position: | 11-251 |
| Cow position: | chr21:26244957-26244734 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 11-256 |
| Cow position: | chr21:6051545-6051301 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 126, 35 |
| Conread position: | 11-284 |
| Cow position: | chr21:10727316-10727049 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 45 |
| Conread position: | 12-148 |
| Cow position: | chr21:5985277-5985415 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 10, 35 |
| Conread position: | 12-224 |
| Cow position: | chr21:9872996-9872794 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 14-281 |
| Cow position: | chr21:42501075-42500799 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 207 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 61, 39 |
| Conread position: | 15-229 |
| Cow position: | chr21:26829224-26829423 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 20-240 |
| Cow position: | chr21:18494999-18494777 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 33 |
| Conread position: | 20-247 |
| Cow position: | chr21:38449417-38449648 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 33 |
| Conread position: | 20-272 |
| Cow position: | chr21:20160708-20160463 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 22-212 |
| Cow position: | chr21:27624736-27624551 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 76, 11 |
| Conread position: | 22-271 |
| Cow position: | chr21:28626268-28626021 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 126, 36 |
| Conread position: | 22-271 |
| Cow position: | chr21:32297480-32297722 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 72, 31 |
| Conread position: | 22-271 |
| Cow position: | chr21:41974347-41974599 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 33 |
| Conread position: | 26-255 |
| Cow position: | chr21:5636694-5636925 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 72, 27 |
| Conread position: | 33-250 |
| Cow position: | chr21:28443359-28443580 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 115, 13 |
| Conread position: | 33-271 |
| Cow position: | chr21:40786695-40786450 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 35-183 |
| Cow position: | chr21:7785243-7785093 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 113, 51 |
| Conread position: | 38-243 |
| Cow position: | chr21:45151607-45151815 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 40, 15 |
| Conread position: | 38-256 |
| Cow position: | chr21:46829258-46829473 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 181, 15 |
| Conread position: | 50-244 |
| Cow position: | chr21:13163892-13163700 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 45, 88 |
| Conread position: | 55-232 |
| Cow position: | chr21:42024118-42023943 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 56-271 |
| Cow position: | chr21:7132466-7132682 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 92, 60 |
| Conread position: | 56-284 |
| Cow position: | chr21:30990275-30990503 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 59-271 |
| Cow position: | chr21:24797679-24797475 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 39, 31 |
| Conread position: | 60-278 |
| Cow position: | chr21:1483484-1483263 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 26, 44 |
| Conread position: | 68-236 |
| Cow position: | chr21:35897649-35897810 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 30, 22 |
| Conread position: | 68-296 |
| Cow position: | chr21:30592321-30592544 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 25, 13 |
Show alignments to all cow chromosomes.