Cow genome map
| Conread name: | Blo2-AR038F03PBC30AF03S |
| Conread position: | 1-144 |
| Cow position: | chr29:12025485-12025629 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 53 |
| Conread position: | 1-153 |
| Cow position: | chr29:25432381-25432236 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 83, 19 |
| Conread position: | 1-158 |
| Cow position: | chr29:24252221-24252066 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 8 |
| Conread position: | 1-163 |
| Cow position: | chr29:40615539-40615699 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 39, 56 |
| Conread position: | 1-199 |
| Cow position: | chr29:22778193-22778395 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 99, 52 |
| Conread position: | 1-211 |
| Cow position: | chr29:3711375-3711161 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 20, 53 |
| Conread position: | 1-226 |
| Cow position: | chr29:17668473-17668255 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 149, 49 |
| Conread position: | 1-228 |
| Cow position: | chr29:16309725-16309508 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 1-250 |
| Cow position: | chr29:8669348-8669091 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 99, 8 |
| Conread position: | 1-255 |
| Cow position: | chr29:2071590-2071837 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 11 |
| Conread position: | 1-278 |
| Cow position: | chr29:17125-17398 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 2-222 |
| Cow position: | chr29:13639388-13639603 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 96, 39 |
| Conread position: | 3-157 |
| Cow position: | chr29:23243899-23244051 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 95, 30 |
| Conread position: | 3-240 |
| Cow position: | chr29:22162271-22162507 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 183 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 4-168 |
| Cow position: | chr29:3538929-3539103 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 56, 42 |
| Conread position: | 4-206 |
| Cow position: | chr29:463677-463874 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 81, 49 |
| Conread position: | 4-255 |
| Cow position: | chr29:2644322-2644574 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 92, 49 |
| Conread position: | 4-272 |
| Cow position: | chr29:24345470-24345750 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 94, 51 |
| Conread position: | 5-222 |
| Cow position: | chr29:1395574-1395369 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 93, 49 |
| Conread position: | 5-240 |
| Cow position: | chr29:31594151-31594369 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 93, 7 |
| Conread position: | 5-255 |
| Cow position: | chr29:19338967-19338710 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 49 |
| Conread position: | 6-173 |
| Cow position: | chr29:20910714-20910888 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 72, 103 |
| Conread position: | 6-250 |
| Cow position: | chr29:732598-732358 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 10, 50 |
| Conread position: | 6-277 |
| Cow position: | chr29:26615743-26616021 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 138, 47 |
| Conread position: | 8-240 |
| Cow position: | chr29:32963533-32963300 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 140, 45 |
| Conread position: | 8-268 |
| Cow position: | chr29:24952665-24952404 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 48 |
| Conread position: | 10-206 |
| Cow position: | chr29:5109230-5109431 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 88, 23 |
| Conread position: | 11-259 |
| Cow position: | chr29:22175661-22175420 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 184 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 99, 42 |
| Conread position: | 11-271 |
| Cow position: | chr29:36586553-36586295 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 43 |
| Conread position: | 12-271 |
| Cow position: | chr29:2744299-2744557 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 45 |
| Conread position: | 13-254 |
| Cow position: | chr29:12783984-12784224 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 189 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 63, 40 |
| Conread position: | 14-196 |
| Cow position: | chr29:28166244-28166428 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 131, 41 |
| Conread position: | 14-222 |
| Cow position: | chr29:34773761-34773964 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 11, 41 |
| Conread position: | 14-229 |
| Cow position: | chr29:11915791-11915573 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 173 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 64, 40 |
| Conread position: | 20-185 |
| Cow position: | chr29:10818471-10818636 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 124, 13 |
| Conread position: | 23-250 |
| Cow position: | chr29:29769389-29769610 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 176 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 75, 30 |
| Conread position: | 23-271 |
| Cow position: | chr29:28868597-28868346 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 23 |
| Conread position: | 24-237 |
| Cow position: | chr29:11562574-11562363 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 124, 30 |
| Conread position: | 25-282 |
| Cow position: | chr29:10456599-10456850 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 247, 30 |
| Conread position: | 29-240 |
| Cow position: | chr29:44135504-44135715 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 119, 27 |
| Conread position: | 30-223 |
| Cow position: | chr29:22714769-22714965 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 64, 23 |
| Conread position: | 33-220 |
| Cow position: | chr29:31488814-31488633 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 47, 24 |
| Conread position: | 33-271 |
| Cow position: | chr29:17109919-17109683 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 8 |
| Conread position: | 34-233 |
| Cow position: | chr29:27618831-27618629 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 12 |
| Conread position: | 42-271 |
| Cow position: | chr29:26519517-26519746 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 39, 115 |
| Conread position: | 47-239 |
| Cow position: | chr29:2188409-2188590 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 47-279 |
| Cow position: | chr29:26285096-26285325 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 59, 43 |
| Conread position: | 55-177 |
| Cow position: | chr29:32211125-32211251 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 55-255 |
| Cow position: | chr29:39111384-39111577 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 160 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 43, 23 |
| Conread position: | 55-266 |
| Cow position: | chr29:42364083-42364294 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 123 |
| Conread position: | 55-271 |
| Cow position: | chr29:19756378-19756163 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 56-256 |
| Cow position: | chr29:40166176-40165972 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 42, 34 |
| Conread position: | 57-240 |
| Cow position: | chr29:22613355-22613181 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 57-254 |
| Cow position: | chr29:5098831-5099030 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 91, 76 |
| Conread position: | 60-226 |
| Cow position: | chr29:26985154-26984986 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 128 |
| Conread position: | 60-253 |
| Cow position: | chr29:36632915-36633101 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 12, 83 |
| Conread position: | 67-281 |
| Cow position: | chr29:4874974-4875200 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 95-252 |
| Cow position: | chr29:30844650-30844494 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 62, 0 |
Show alignments to all cow chromosomes.