Cow genome map
| Conread name: | Blo2-AR038F03PBC30AF03S |
| Conread position: | 1-178 |
| Cow position: | chr3:25060040-25059859 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 99, 51 |
| Conread position: | 1-179 |
| Cow position: | chr3:76713362-76713537 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 93, 52 |
| Conread position: | 1-229 |
| Cow position: | chr3:13577227-13577449 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-244 |
| Cow position: | chr3:53046699-53046937 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 15, 52 |
| Conread position: | 1-244 |
| Cow position: | chr3:75158322-75158085 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 15, 8 |
| Conread position: | 1-245 |
| Cow position: | chr3:81277738-81277985 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 97, 32 |
| Conread position: | 1-248 |
| Cow position: | chr3:49140079-49140331 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 26, 8 |
| Conread position: | 1-249 |
| Cow position: | chr3:75057170-75057400 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 29 |
| Conread position: | 1-251 |
| Cow position: | chr3:4050156-4049926 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 84, 52 |
| Conread position: | 1-254 |
| Cow position: | chr3:13329813-13330062 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 1-256 |
| Cow position: | chr3:65413318-65413567 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 52 |
| Conread position: | 1-258 |
| Cow position: | chr3:73764234-73764487 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 25 |
| Conread position: | 1-268 |
| Cow position: | chr3:42178119-42177856 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 8 |
| Conread position: | 1-271 |
| Cow position: | chr3:31046991-31047249 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 199 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 93, 21 |
| Conread position: | 1-271 |
| Cow position: | chr3:48241579-48241314 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 1-272 |
| Cow position: | chr3:7566463-7566727 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 52 |
| Conread position: | 1-274 |
| Cow position: | chr3:53739225-53739503 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 94, 19 |
| Conread position: | 1-278 |
| Cow position: | chr3:15051988-15052250 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 20, 54 |
| Conread position: | 1-279 |
| Cow position: | chr3:50069724-50069463 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 92, 53 |
| Conread position: | 1-281 |
| Cow position: | chr3:26904070-26903798 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 11 |
| Conread position: | 1-281 |
| Cow position: | chr3:49731679-49731957 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 76, 52 |
| Conread position: | 1-281 |
| Cow position: | chr3:50614601-50614326 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 27, 54 |
| Conread position: | 1-311 |
| Cow position: | chr3:59630542-59630849 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 11 |
| Conread position: | 2-254 |
| Cow position: | chr3:17895801-17895564 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 96, 5 |
| Conread position: | 2-256 |
| Cow position: | chr3:45648094-45647845 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 23, 55 |
| Conread position: | 2-268 |
| Cow position: | chr3:59271502-59271255 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 26, 52 |
| Conread position: | 4-169 |
| Cow position: | chr3:7940597-7940761 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 94, 49 |
| Conread position: | 4-202 |
| Cow position: | chr3:34937802-34937602 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 94, 49 |
| Conread position: | 4-221 |
| Cow position: | chr3:22820527-22820312 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 4-228 |
| Cow position: | chr3:73590039-73590262 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 17, 50 |
| Conread position: | 4-246 |
| Cow position: | chr3:80564922-80564681 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 89, 49 |
| Conread position: | 4-268 |
| Cow position: | chr3:2903338-2903602 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 86 |
| Conread position: | 5-222 |
| Cow position: | chr3:8061081-8060874 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 6-210 |
| Cow position: | chr3:55835866-55836075 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 17, 51 |
| Conread position: | 6-252 |
| Cow position: | chr3:35852518-35852755 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 78, 47 |
| Conread position: | 6-289 |
| Cow position: | chr3:72377-72089 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 97, 156 |
| Conread position: | 7-256 |
| Cow position: | chr3:75711266-75711027 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 91, 25 |
| Conread position: | 8-279 |
| Cow position: | chr3:11640388-11640119 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 44 |
| Conread position: | 8-283 |
| Cow position: | chr3:44622931-44623216 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 70, 18 |
| Conread position: | 9-281 |
| Cow position: | chr3:31903160-31903427 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 44 |
| Conread position: | 11-252 |
| Cow position: | chr3:64280980-64281224 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 42 |
| Conread position: | 11-254 |
| Cow position: | chr3:5097158-5096913 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 42 |
| Conread position: | 11-281 |
| Cow position: | chr3:66609891-66610154 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 44 |
| Conread position: | 12-220 |
| Cow position: | chr3:18686858-18686660 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 12-222 |
| Cow position: | chr3:71238106-71237899 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 14 |
| Conread position: | 12-254 |
| Cow position: | chr3:29360195-29360425 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 74, 41 |
| Conread position: | 12-268 |
| Cow position: | chr3:69849555-69849806 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 12-271 |
| Cow position: | chr3:72131342-72131608 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 13-168 |
| Cow position: | chr3:55712381-55712221 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 86, 40 |
| Conread position: | 13-281 |
| Cow position: | chr3:14552825-14552559 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 13 |
| Conread position: | 14-258 |
| Cow position: | chr3:19006608-19006373 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 185 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 84, 39 |
| Conread position: | 14-267 |
| Cow position: | chr3:77227271-77227015 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 84, 42 |
| Conread position: | 14-271 |
| Cow position: | chr3:18067084-18066827 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 39 |
| Conread position: | 19-271 |
| Cow position: | chr3:69961772-69962016 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 20-246 |
| Cow position: | chr3:52863241-52863465 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 80, 33 |
| Conread position: | 20-252 |
| Cow position: | chr3:39969924-39970160 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 29, 12 |
| Conread position: | 21-271 |
| Cow position: | chr3:5100825-5101067 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 22-187 |
| Cow position: | chr3:60265300-60265459 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 50, 33 |
| Conread position: | 22-246 |
| Cow position: | chr3:11326414-11326633 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 55, 19 |
| Conread position: | 22-248 |
| Cow position: | chr3:59208755-59208530 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 72, 31 |
| Conread position: | 23-236 |
| Cow position: | chr3:8604074-8604287 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 78, 32 |
| Conread position: | 23-269 |
| Cow position: | chr3:35283152-35283404 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 28, 10 |
| Conread position: | 27-304 |
| Cow position: | chr3:62826683-62826966 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 26 |
| Conread position: | 29-268 |
| Cow position: | chr3:11254225-11254456 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 199, 24 |
| Conread position: | 32-220 |
| Cow position: | chr3:23270029-23269846 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 32-271 |
| Cow position: | chr3:42423401-42423638 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 58 |
| Conread position: | 33-239 |
| Cow position: | chr3:7331183-7331394 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 61, 22 |
| Conread position: | 33-255 |
| Cow position: | chr3:58383896-58383677 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 33-281 |
| Cow position: | chr3:12324004-12323749 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 45, 20 |
| Conread position: | 33-281 |
| Cow position: | chr3:54782088-54782330 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 65, 6 |
| Conread position: | 35-271 |
| Cow position: | chr3:53384353-53384590 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 50 |
| Conread position: | 35-271 |
| Cow position: | chr3:79902434-79902196 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 39-271 |
| Cow position: | chr3:16004066-16004293 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 54, 16 |
| Conread position: | 42-271 |
| Cow position: | chr3:18393467-18393691 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 56, 11 |
| Conread position: | 47-284 |
| Cow position: | chr3:31056082-31056321 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 56 |
| Conread position: | 55-256 |
| Cow position: | chr3:9641474-9641272 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 157 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 55-271 |
| Cow position: | chr3:21341053-21341270 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 39, 35 |
| Conread position: | 55-272 |
| Cow position: | chr3:8556876-8557089 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 55-285 |
| Cow position: | chr3:70895959-70895726 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 35 |
| Conread position: | 56-254 |
| Cow position: | chr3:68708096-68708291 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 37, 25 |
| Conread position: | 60-179 |
| Cow position: | chr3:5082734-5082857 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 38, 21 |
| Conread position: | 67-244 |
| Cow position: | chr3:37485881-37486063 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 31, 14 |
Show alignments to all cow chromosomes.