Cow genome map

Conread name: Blo2-AR038F03PBC30AF03S

Conread position: 1-187
Cow position: chr4:1354646-1354821 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 148
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 48, 18

Conread position: 1-188
Cow position: chr4:28839604-28839418 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 97, 54

Conread position: 1-194
Cow position: chr4:11332071-11331874 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 22, 56

Conread position: 1-202
Cow position: chr4:34924713-34924915 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 157
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 77, 52

Conread position: 1-229
Cow position: chr4:1495425-1495649 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 170
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 32, 53

Conread position: 1-244
Cow position: chr4:1237137-1237380 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 185
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 39, 53

Conread position: 1-254
Cow position: chr4:22345044-22345289 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 53

Conread position: 1-254
Cow position: chr4:51739732-51739977 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 184
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 93, 25

Conread position: 1-256
Cow position: chr4:25888854-25889111 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 196
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 77, 11

Conread position: 1-256
Cow position: chr4:66547791-66548032 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 192
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 244, 53

Conread position: 1-264
Cow position: chr4:11901584-11901847 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 40

Conread position: 1-264
Cow position: chr4:36893336-36893069 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 36

Conread position: 1-267
Cow position: chr4:45775361-45775628 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 52

Conread position: 1-268
Cow position: chr4:24118930-24119199 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 37

Conread position: 1-271
Cow position: chr4:10905487-10905748 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 1-271
Cow position: chr4:37935308-37935572 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 1-271
Cow position: chr4:60897298-60897564 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 1-271
Cow position: chr4:62771943-62772226 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 204
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 49, 0

Conread position: 1-281
Cow position: chr4:44838917-44839188 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 45

Conread position: 1-281
Cow position: chr4:48137889-48137611 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 45

Conread position: 1-284
Cow position: chr4:19584693-19584401 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 11

Conread position: 2-237
Cow position: chr4:45367713-45367479 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 51

Conread position: 2-252
Cow position: chr4:44496346-44496112 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 182
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 5, 0

Conread position: 2-268
Cow position: chr4:19313988-19313717 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 51

Conread position: 2-279
Cow position: chr4:61999471-61999753 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 204
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 61, 219

Conread position: 3-246
Cow position: chr4:12049220-12048979 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 179
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 95, 29

Conread position: 3-271
Cow position: chr4:20894-20635 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 192
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 91, 50

Conread position: 3-272
Cow position: chr4:54191065-54190807 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 202
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 25, 53

Conread position: 3-281
Cow position: chr4:14470593-14470871 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 202
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 23, 52

Conread position: 4-197
Cow position: chr4:38935331-38935141 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 94, 49

Conread position: 4-227
Cow position: chr4:13256062-13255849 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 168
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 94, 16

Conread position: 4-271
Cow position: chr4:27276570-27276834 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 49

Conread position: 4-281
Cow position: chr4:11201792-11201517 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 204
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 90, 21

Conread position: 4-281
Cow position: chr4:66172826-66173097 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 193
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 94, 37

Conread position: 6-215
Cow position: chr4:19463468-19463255 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 88, 49

Conread position: 6-251
Cow position: chr4:21531671-21531910 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 186
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 17, 50

Conread position: 6-271
Cow position: chr4:57584271-57584519 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 189
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 213, 46

Conread position: 6-293
Cow position: chr4:31506057-31506336 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 195
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 9, 52

Conread position: 7-250
Cow position: chr4:23445077-23445321 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 40

Conread position: 8-252
Cow position: chr4:47348797-47348560 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 9-158
Cow position: chr4:45483414-45483259 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 13, 39

Conread position: 9-225
Cow position: chr4:61897566-61897784 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 63, 28

Conread position: 9-237
Cow position: chr4:58880991-58881223 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 171
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 20, 49

Conread position: 9-255
Cow position: chr4:4084480-4084721 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 35

Conread position: 9-271
Cow position: chr4:61215025-61215289 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 198
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 13, 46

Conread position: 9-280
Cow position: chr4:43369882-43370150 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 44

Conread position: 9-281
Cow position: chr4:33097006-33097262 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 187
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 95, 46

Conread position: 10-271
Cow position: chr4:45644342-45644604 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 196
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 83, 23

Conread position: 11-248
Cow position: chr4:46591633-46591394 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 42

Conread position: 11-255
Cow position: chr4:17474407-17474162 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 41

Conread position: 11-260
Cow position: chr4:29291488-29291243 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 46

Conread position: 11-268
Cow position: chr4:39128502-39128243 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 42

Conread position: 11-271
Cow position: chr4:44782339-44782083 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 12-176
Cow position: chr4:33869625-33869465 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 88, 38

Conread position: 12-178
Cow position: chr4:43515693-43515524 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 86, 41

Conread position: 12-271
Cow position: chr4:39009932-39009678 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 183
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 123, 29

Conread position: 13-189
Cow position: chr4:36929283-36929104 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 85, 40

Conread position: 13-289
Cow position: chr4:56570773-56570494 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 208
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 72, 40

Conread position: 14-226
Cow position: chr4:11897333-11897545 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 170
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 73, 39

Conread position: 20-190
Cow position: chr4:29384264-29384429 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 20, 0

Conread position: 20-227
Cow position: chr4:21232913-21233118 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 158
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 32, 13

Conread position: 20-244
Cow position: chr4:32726185-32725960 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 78, 33

Conread position: 20-247
Cow position: chr4:54667730-54667958 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 6

Conread position: 20-248
Cow position: chr4:43495861-43495634 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 173
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 39, 33

Conread position: 20-256
Cow position: chr4:67392918-67392694 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 178
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 80, 31

Conread position: 20-268
Cow position: chr4:37343074-37342829 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 32

Conread position: 22-254
Cow position: chr4:46058795-46059013 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 169
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 73, 31

Conread position: 22-275
Cow position: chr4:21391856-21392100 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 193
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 76, 34

Conread position: 22-276
Cow position: chr4:16602096-16602350 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 191
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 76, 23

Conread position: 23-256
Cow position: chr4:41867396-41867168 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 23-278
Cow position: chr4:13142598-13142824 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 185
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 26-228
Cow position: chr4:67599786-67599981 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 68, 14

Conread position: 26-254
Cow position: chr4:55523317-55523100 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 158
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 28-176
Cow position: chr4:10379059-10378914 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 28-254
Cow position: chr4:44072815-44073044 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 175
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 65, 28

Conread position: 28-268
Cow position: chr4:17124343-17124579 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 176
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 31, 25

Conread position: 28-271
Cow position: chr4:27292005-27292251 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 180
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 70, 25

Conread position: 28-279
Cow position: chr4:33433313-33433559 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 187
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 70, 27

Conread position: 31-243
Cow position: chr4:961713-961926 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 159

Conread position: 32-212
Cow position: chr4:43749861-43750044 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 66, 24

Conread position: 33-179
Cow position: chr4:29238090-29238242 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 20

Conread position: 33-190
Cow position: chr4:66118577-66118737 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 45, 20

Conread position: 33-217
Cow position: chr4:23911637-23911826 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 151
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 45, 20

Conread position: 33-246
Cow position: chr4:23847102-23847317 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 171
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 65, 22

Conread position: 33-250
Cow position: chr4:42266806-42267012 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 168
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 65, 22

Conread position: 33-271
Cow position: chr4:5610125-5610360 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 183
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 61, 23

Conread position: 33-271
Cow position: chr4:21058437-21058676 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 20

Conread position: 49-252
Cow position: chr4:22744256-22744052 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 161
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 49, 41

Conread position: 53-281
Cow position: chr4:7249642-7249872 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 172
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 25, 54

Conread position: 55-253
Cow position: chr4:68387716-68387519 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 164, 0

Conread position: 55-254
Cow position: chr4:27530042-27529839 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 163
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 55-266
Cow position: chr4:64072424-64072638 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 149
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 87, 169

Conread position: 55-271
Cow position: chr4:19582692-19582907 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 166
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 43, 26

Conread position: 55-289
Cow position: chr4:620225-620461 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 179
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 43, 23

Conread position: 56-226
Cow position: chr4:13406634-13406459 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 92, 0

Conread position: 58-225
Cow position: chr4:26659226-26659060 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 40, 25

Conread position: 60-271
Cow position: chr4:56233607-56233400 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 30

Conread position: 62-254
Cow position: chr4:3251614-3251810 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 151
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 26, 19

Conread position: 63-243
Cow position: chr4:10472140-10471960 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 35, 27

Conread position: 63-278
Cow position: chr4:19497335-19497547 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 161
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 30, 18

Conread position: 95-283
Cow position: chr4:38945930-38945741 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 157
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 0

Show alignments to all cow chromosomes.