Cow genome map
| Conread name: | Blo2-AR038F03PBC30AF03S |
| Conread position: | 1-145 |
| Cow position: | chr5:54767898-54768042 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 8 |
| Conread position: | 1-147 |
| Cow position: | chr5:18289141-18288995 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 99, 52 |
| Conread position: | 1-183 |
| Cow position: | chr5:55955918-55955735 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 149, 52 |
| Conread position: | 1-199 |
| Cow position: | chr5:17644644-17644842 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 96, 52 |
| Conread position: | 1-223 |
| Cow position: | chr5:40039758-40039981 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 20, 55 |
| Conread position: | 1-228 |
| Cow position: | chr5:8024183-8024407 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 20, 53 |
| Conread position: | 1-240 |
| Cow position: | chr5:32696812-32697040 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-240 |
| Cow position: | chr5:56820250-56820487 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 53 |
| Conread position: | 1-249 |
| Cow position: | chr5:65776375-65776622 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 97, 18 |
| Conread position: | 1-252 |
| Cow position: | chr5:56433817-56433562 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 15, 59 |
| Conread position: | 1-254 |
| Cow position: | chr5:42744796-42744556 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 19, 46 |
| Conread position: | 1-256 |
| Cow position: | chr5:52000233-51999976 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 52 |
| Conread position: | 1-264 |
| Cow position: | chr5:16185098-16184838 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-266 |
| Cow position: | chr5:32956084-32956344 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 15, 55 |
| Conread position: | 1-267 |
| Cow position: | chr5:32140698-32140959 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 52 |
| Conread position: | 1-271 |
| Cow position: | chr5:16206143-16206400 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 15, 33 |
| Conread position: | 1-271 |
| Cow position: | chr5:55176901-55176634 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 52 |
| Conread position: | 1-280 |
| Cow position: | chr5:47871030-47871317 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 8 |
| Conread position: | 1-281 |
| Cow position: | chr5:41951083-41951351 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-284 |
| Cow position: | chr5:6130364-6130086 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 102, 52 |
| Conread position: | 1-299 |
| Cow position: | chr5:44994030-44994324 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 53 |
| Conread position: | 1-315 |
| Cow position: | chr5:53855710-53855401 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 52 |
| Conread position: | 2-251 |
| Cow position: | chr5:35208273-35208023 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 24 |
| Conread position: | 3-211 |
| Cow position: | chr5:57575777-57575567 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 95, 32 |
| Conread position: | 3-222 |
| Cow position: | chr5:29212952-29212739 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 105, 49 |
| Conread position: | 3-264 |
| Cow position: | chr5:34288462-34288721 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 137, 50 |
| Conread position: | 4-252 |
| Cow position: | chr5:45225816-45226063 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 42 |
| Conread position: | 4-254 |
| Cow position: | chr5:34300924-34300684 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 100, 52 |
| Conread position: | 4-256 |
| Cow position: | chr5:34115658-34115419 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 186 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 4-274 |
| Cow position: | chr5:61576552-61576278 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 30 |
| Conread position: | 5-236 |
| Cow position: | chr5:5848180-5848410 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 22, 148 |
| Conread position: | 5-247 |
| Cow position: | chr5:28324361-28324111 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 21 |
| Conread position: | 6-220 |
| Cow position: | chr5:7044700-7044918 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 17, 50 |
| Conread position: | 6-255 |
| Cow position: | chr5:57935103-57935356 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 92, 47 |
| Conread position: | 6-271 |
| Cow position: | chr5:6045299-6045028 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 49 |
| Conread position: | 6-271 |
| Cow position: | chr5:65941245-65941511 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 49 |
| Conread position: | 7-255 |
| Cow position: | chr5:72150252-72150008 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 216, 48 |
| Conread position: | 7-265 |
| Cow position: | chr5:59443248-59443503 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 25 |
| Conread position: | 7-271 |
| Cow position: | chr5:45845689-45845951 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 141, 46 |
| Conread position: | 8-193 |
| Cow position: | chr5:47323468-47323270 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 8-256 |
| Cow position: | chr5:28927585-28927836 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 48 |
| Conread position: | 9-155 |
| Cow position: | chr5:7921397-7921542 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 89, 44 |
| Conread position: | 9-266 |
| Cow position: | chr5:46122349-46122599 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 89, 11 |
| Conread position: | 10-278 |
| Cow position: | chr5:42748159-42747894 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 205 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 72, 36 |
| Conread position: | 12-182 |
| Cow position: | chr5:12866818-12866998 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 50, 44 |
| Conread position: | 12-271 |
| Cow position: | chr5:5111075-5111335 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 41 |
| Conread position: | 13-265 |
| Cow position: | chr5:34441794-34442045 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 69, 18 |
| Conread position: | 13-281 |
| Cow position: | chr5:39937105-39936833 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 39 |
| Conread position: | 14-155 |
| Cow position: | chr5:19294491-19294628 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 20-180 |
| Cow position: | chr5:30949925-30950087 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 78, 32 |
| Conread position: | 20-227 |
| Cow position: | chr5:35235717-35235923 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 169 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 61, 33 |
| Conread position: | 20-246 |
| Cow position: | chr5:45037013-45036787 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 35 |
| Conread position: | 20-284 |
| Cow position: | chr5:65932936-65933198 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 33 |
| Conread position: | 20-335 |
| Cow position: | chr5:57127004-57126693 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 128, 6 |
| Conread position: | 21-235 |
| Cow position: | chr5:56028538-56028752 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 125, 9 |
| Conread position: | 21-268 |
| Cow position: | chr5:29828040-29827798 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 32 |
| Conread position: | 22-202 |
| Cow position: | chr5:48009858-48010036 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 22-266 |
| Cow position: | chr5:50821772-50821535 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 22-271 |
| Cow position: | chr5:55942407-55942656 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 76, 13 |
| Conread position: | 22-277 |
| Cow position: | chr5:21828856-21828598 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 31 |
| Conread position: | 23-251 |
| Cow position: | chr5:60520151-60519928 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 23-280 |
| Cow position: | chr5:27015670-27015423 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 125, 18 |
| Conread position: | 23-281 |
| Cow position: | chr5:9894137-9894397 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 60 |
| Conread position: | 27-271 |
| Cow position: | chr5:26990377-26990135 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 189 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 71, 28 |
| Conread position: | 28-271 |
| Cow position: | chr5:51357516-51357760 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 70, 25 |
| Conread position: | 29-193 |
| Cow position: | chr5:71723052-71722880 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 78 |
| Conread position: | 29-269 |
| Cow position: | chr5:68604842-68604600 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 53, 75 |
| Conread position: | 29-271 |
| Cow position: | chr5:44583145-44583376 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 66, 27 |
| Conread position: | 30-193 |
| Cow position: | chr5:46512781-46512947 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 23 |
| Conread position: | 32-246 |
| Cow position: | chr5:6683375-6683581 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 33-203 |
| Cow position: | chr5:4322388-4322220 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 110, 23 |
| Conread position: | 39-252 |
| Cow position: | chr5:46103967-46104175 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 59, 14 |
| Conread position: | 46-218 |
| Cow position: | chr5:75828769-75828940 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 111, 95 |
| Conread position: | 46-264 |
| Cow position: | chr5:63917443-63917661 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 53, 44 |
| Conread position: | 55-271 |
| Cow position: | chr5:15598275-15598492 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 64-248 |
| Cow position: | chr5:12672081-12672261 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 64-254 |
| Cow position: | chr5:24836997-24837181 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 34, 26 |
Show alignments to all cow chromosomes.