Cow genome map
| Conread name: | Blo2-AR038F03PBC30AF03S |
| Conread position: | 1-153 |
| Cow position: | chr6:38233983-38233834 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 76, 51 |
| Conread position: | 1-175 |
| Cow position: | chr6:17313759-17313582 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 20, 41 |
| Conread position: | 1-187 |
| Cow position: | chr6:40834444-40834633 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 97, 52 |
| Conread position: | 1-196 |
| Cow position: | chr6:11246790-11246595 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 20, 54 |
| Conread position: | 1-203 |
| Cow position: | chr6:49604701-49604507 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-222 |
| Cow position: | chr6:46292322-46292533 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 85, 52 |
| Conread position: | 1-252 |
| Cow position: | chr6:29239965-29239718 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 97, 55 |
| Conread position: | 1-254 |
| Cow position: | chr6:37149213-37148970 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 190 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 99, 45 |
| Conread position: | 1-254 |
| Cow position: | chr6:66874376-66874135 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 20, 8 |
| Conread position: | 1-255 |
| Cow position: | chr6:607285-607034 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 41 |
| Conread position: | 1-255 |
| Cow position: | chr6:5673271-5673001 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 1-256 |
| Cow position: | chr6:5095521-5095779 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 53 |
| Conread position: | 1-270 |
| Cow position: | chr6:38207465-38207737 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 1-271 |
| Cow position: | chr6:4864523-4864782 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 197 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 97, 52 |
| Conread position: | 1-271 |
| Cow position: | chr6:11169724-11169464 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 1-271 |
| Cow position: | chr6:15242858-15242592 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 56 |
| Conread position: | 1-271 |
| Cow position: | chr6:58074074-58073799 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 1-271 |
| Cow position: | chr6:61515165-61515441 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 53 |
| Conread position: | 1-271 |
| Cow position: | chr6:62924974-62925237 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 11 |
| Conread position: | 1-278 |
| Cow position: | chr6:10176271-10176551 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 42 |
| Conread position: | 1-281 |
| Cow position: | chr6:9008588-9008863 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1-281 |
| Cow position: | chr6:34076053-34075771 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 46 |
| Conread position: | 1-282 |
| Cow position: | chr6:66303816-66304095 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 10, 56 |
| Conread position: | 1-310 |
| Cow position: | chr6:8804505-8804808 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 2-169 |
| Cow position: | chr6:582249-582414 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 154, 18 |
| Conread position: | 2-233 |
| Cow position: | chr6:58732282-58732520 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 76, 51 |
| Conread position: | 2-248 |
| Cow position: | chr6:7190095-7190340 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 2-254 |
| Cow position: | chr6:49685608-49685358 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 3-266 |
| Cow position: | chr6:4468791-4468508 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 4-206 |
| Cow position: | chr6:52901256-52901062 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 4-213 |
| Cow position: | chr6:30974069-30973854 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 131, 49 |
| Conread position: | 4-251 |
| Cow position: | chr6:38641516-38641273 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 49 |
| Conread position: | 4-258 |
| Cow position: | chr6:25773366-25773613 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 49 |
| Conread position: | 4-273 |
| Cow position: | chr6:63720219-63719953 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 4-276 |
| Cow position: | chr6:17090621-17090349 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 49 |
| Conread position: | 6-193 |
| Cow position: | chr6:58363989-58364178 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 49 |
| Conread position: | 6-248 |
| Cow position: | chr6:7539594-7539352 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 6-268 |
| Cow position: | chr6:18961496-18961763 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 92, 49 |
| Conread position: | 7-140 |
| Cow position: | chr6:56848897-56849030 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-281 |
| Cow position: | chr6:40032207-40031938 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 25 |
| Conread position: | 8-237 |
| Cow position: | chr6:1886646-1886872 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 90, 48 |
| Conread position: | 8-265 |
| Cow position: | chr6:16700283-16700021 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 38 |
| Conread position: | 9-233 |
| Cow position: | chr6:6098266-6098488 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 64, 44 |
| Conread position: | 9-256 |
| Cow position: | chr6:17345383-17345142 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 77, 24 |
| Conread position: | 9-271 |
| Cow position: | chr6:32121923-32121667 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 46 |
| Conread position: | 10-256 |
| Cow position: | chr6:16746358-16746111 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 75, 23 |
| Conread position: | 11-190 |
| Cow position: | chr6:35993599-35993414 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 67, 42 |
| Conread position: | 11-229 |
| Cow position: | chr6:66131322-66131106 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 85, 79 |
| Conread position: | 11-244 |
| Cow position: | chr6:6460557-6460325 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 84, 22 |
| Conread position: | 11-271 |
| Cow position: | chr6:8562737-8562472 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 11, 44 |
| Conread position: | 11-272 |
| Cow position: | chr6:42565706-42565441 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 44 |
| Conread position: | 11-281 |
| Cow position: | chr6:36928670-36928397 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 49, 21 |
| Conread position: | 12-158 |
| Cow position: | chr6:53841489-53841630 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 74, 41 |
| Conread position: | 12-220 |
| Cow position: | chr6:53519609-53519816 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 13-199 |
| Cow position: | chr6:65264526-65264707 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 96, 14 |
| Conread position: | 13-271 |
| Cow position: | chr6:35181247-35181497 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 40 |
| Conread position: | 20-254 |
| Cow position: | chr6:51581250-51581486 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 73, 13 |
| Conread position: | 20-264 |
| Cow position: | chr6:6264647-6264407 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 184 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 161, 36 |
| Conread position: | 20-271 |
| Cow position: | chr6:18988222-18987973 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 114 |
| Conread position: | 22-256 |
| Cow position: | chr6:60350290-60350528 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 23-246 |
| Cow position: | chr6:899287-899503 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 75, 30 |
| Conread position: | 23-256 |
| Cow position: | chr6:32210625-32210855 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 75, 30 |
| Conread position: | 23-269 |
| Cow position: | chr6:28477182-28476939 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 8, 31 |
| Conread position: | 26-268 |
| Cow position: | chr6:26915330-26915089 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 72, 27 |
| Conread position: | 27-236 |
| Cow position: | chr6:5114048-5114257 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 60, 27 |
| Conread position: | 28-256 |
| Cow position: | chr6:4383484-4383264 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 28-271 |
| Cow position: | chr6:2547243-2546999 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 25 |
| Conread position: | 32-253 |
| Cow position: | chr6:50422087-50422296 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 33-245 |
| Cow position: | chr6:16423692-16423481 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 65, 20 |
| Conread position: | 33-256 |
| Cow position: | chr6:10332097-10332325 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 61, 20 |
| Conread position: | 33-278 |
| Cow position: | chr6:10605681-10605431 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 190 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 115, 20 |
| Conread position: | 33-278 |
| Cow position: | chr6:35471526-35471779 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 20 |
| Conread position: | 34-223 |
| Cow position: | chr6:32268884-32269066 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 19 |
| Conread position: | 35-234 |
| Cow position: | chr6:7989417-7989620 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 43, 72 |
| Conread position: | 56-255 |
| Cow position: | chr6:15305552-15305358 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 56-256 |
| Cow position: | chr6:44194571-44194774 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 60-224 |
| Cow position: | chr6:9751078-9751237 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 38, 30 |
Show alignments to all cow chromosomes.