Cow genome map
| Conread name: | Blo2-AR038F03PBC30AF03S |
| Conread position: | 1-144 |
| Cow position: | chr9:31638598-31638455 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 94, 45 |
| Conread position: | 1-185 |
| Cow position: | chr9:30477731-30477557 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 73, 18 |
| Conread position: | 1-187 |
| Cow position: | chr9:50667466-50667653 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 99, 89 |
| Conread position: | 1-202 |
| Cow position: | chr9:29091837-29092048 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 11, 47 |
| Conread position: | 1-216 |
| Cow position: | chr9:58979442-58979659 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 97, 22 |
| Conread position: | 1-235 |
| Cow position: | chr9:8288660-8288895 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 53 |
| Conread position: | 1-239 |
| Cow position: | chr9:5531990-5532233 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 46 |
| Conread position: | 1-239 |
| Cow position: | chr9:6225410-6225166 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 52 |
| Conread position: | 1-254 |
| Cow position: | chr9:18002909-18002653 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 53 |
| Conread position: | 1-255 |
| Cow position: | chr9:22114592-22114336 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 53 |
| Conread position: | 1-255 |
| Cow position: | chr9:63745855-63746101 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 86, 29 |
| Conread position: | 1-256 |
| Cow position: | chr9:37000016-36999763 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 52 |
| Conread position: | 1-264 |
| Cow position: | chr9:29185088-29184828 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 8 |
| Conread position: | 1-267 |
| Cow position: | chr9:64559838-64559577 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 97, 16 |
| Conread position: | 1-271 |
| Cow position: | chr9:5509769-5510037 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 19 |
| Conread position: | 1-271 |
| Cow position: | chr9:44467305-44467036 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 21 |
| Conread position: | 1-289 |
| Cow position: | chr9:15215642-15215350 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 45 |
| Conread position: | 1-295 |
| Cow position: | chr9:31626193-31626487 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 20, 46 |
| Conread position: | 2-239 |
| Cow position: | chr9:16182441-16182210 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 96, 17 |
| Conread position: | 2-256 |
| Cow position: | chr9:42445937-42445687 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 53 |
| Conread position: | 2-271 |
| Cow position: | chr9:9723835-9723570 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 146, 7 |
| Conread position: | 2-271 |
| Cow position: | chr9:32676723-32676995 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 201 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 48, 10 |
| Conread position: | 3-178 |
| Cow position: | chr9:17799676-17799850 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 95, 5 |
| Conread position: | 3-269 |
| Cow position: | chr9:11319587-11319336 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 3-311 |
| Cow position: | chr9:4928674-4928980 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 27 |
| Conread position: | 4-171 |
| Cow position: | chr9:19493416-19493246 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 144, 16 |
| Conread position: | 4-269 |
| Cow position: | chr9:28726674-28726412 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 49 |
| Conread position: | 4-271 |
| Cow position: | chr9:18163109-18162839 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 81, 49 |
| Conread position: | 5-234 |
| Cow position: | chr9:4128736-4128507 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 89, 51 |
| Conread position: | 5-261 |
| Cow position: | chr9:4861435-4861693 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 93, 51 |
| Conread position: | 5-268 |
| Cow position: | chr9:7409825-7410092 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 41 |
| Conread position: | 5-281 |
| Cow position: | chr9:37016944-37017209 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 41 |
| Conread position: | 5-283 |
| Cow position: | chr9:30402373-30402095 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 93, 46 |
| Conread position: | 6-251 |
| Cow position: | chr9:18380911-18381153 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 47 |
| Conread position: | 7-173 |
| Cow position: | chr9:11198290-11198127 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 132, 13 |
| Conread position: | 7-246 |
| Cow position: | chr9:41781949-41782183 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 94, 13 |
| Conread position: | 7-268 |
| Cow position: | chr9:22152033-22151778 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 7-271 |
| Cow position: | chr9:38343940-38344208 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 46 |
| Conread position: | 8-240 |
| Cow position: | chr9:24997469-24997234 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 45 |
| Conread position: | 9-225 |
| Cow position: | chr9:11068419-11068202 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 128, 47 |
| Conread position: | 9-238 |
| Cow position: | chr9:55287840-55287611 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 142, 44 |
| Conread position: | 9-271 |
| Cow position: | chr9:11299638-11299384 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 84, 17 |
| Conread position: | 10-267 |
| Cow position: | chr9:5319686-5319938 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 11-256 |
| Cow position: | chr9:58133965-58133726 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 42 |
| Conread position: | 11-271 |
| Cow position: | chr9:9490846-9491101 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 43 |
| Conread position: | 11-271 |
| Cow position: | chr9:42497879-42498142 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 43 |
| Conread position: | 12-264 |
| Cow position: | chr9:58439725-58439476 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 40 |
| Conread position: | 12-271 |
| Cow position: | chr9:33218895-33218639 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 13-238 |
| Cow position: | chr9:17928814-17929053 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 13-271 |
| Cow position: | chr9:1952213-1951957 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 40 |
| Conread position: | 13-271 |
| Cow position: | chr9:57951268-57951017 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 14-271 |
| Cow position: | chr9:8998413-8998668 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 39 |
| Conread position: | 14-271 |
| Cow position: | chr9:15805863-15805608 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 80, 18 |
| Conread position: | 20-264 |
| Cow position: | chr9:48343664-48343907 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 78, 36 |
| Conread position: | 20-311 |
| Cow position: | chr9:1949982-1950277 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 33 |
| Conread position: | 21-209 |
| Cow position: | chr9:50139350-50139532 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 73, 32 |
| Conread position: | 23-268 |
| Cow position: | chr9:38793079-38793329 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 81, 30 |
| Conread position: | 24-227 |
| Cow position: | chr9:41652852-41653058 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 70, 32 |
| Conread position: | 24-271 |
| Cow position: | chr9:64155792-64155543 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 26-250 |
| Cow position: | chr9:20091116-20091330 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 72, 27 |
| Conread position: | 26-271 |
| Cow position: | chr9:5500926-5501162 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 29-225 |
| Cow position: | chr9:9595883-9595686 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 108, 24 |
| Conread position: | 32-225 |
| Cow position: | chr9:43207305-43207112 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 46, 21 |
| Conread position: | 33-280 |
| Cow position: | chr9:52505235-52504982 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 38-229 |
| Cow position: | chr9:55118160-55118349 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 47, 15 |
| Conread position: | 38-279 |
| Cow position: | chr9:15983004-15982757 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 49, 15 |
| Conread position: | 51-268 |
| Cow position: | chr9:1350355-1350136 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 5, 79 |
| Conread position: | 54-239 |
| Cow position: | chr9:51204816-51205002 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 55-248 |
| Cow position: | chr9:24887296-24887485 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 55-264 |
| Cow position: | chr9:23388581-23388370 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 61-281 |
| Cow position: | chr9:33823201-33823416 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 37, 20 |
| Conread position: | 62-244 |
| Cow position: | chr9:9624927-9624742 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 76, 115 |
Show alignments to all cow chromosomes.