Cow genome map

Conread name: Blo2-AR038F03PBC30AF03S

Conread position: 1-162
Cow position: chrX:9365665-9365822 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 97, 11

Conread position: 1-168
Cow position: chrX:35969075-35969237 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 57, 22

Conread position: 1-190
Cow position: chrX:29680250-29680437 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 146
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 94, 9

Conread position: 1-215
Cow position: chrX:1499676-1499468 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 168
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 86, 8

Conread position: 1-216
Cow position: chrX:36356123-36355921 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 93, 11

Conread position: 1-223
Cow position: chrX:28835891-28836110 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 14, 54

Conread position: 1-234
Cow position: chrX:29601817-29602053 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 53

Conread position: 1-245
Cow position: chrX:37910452-37910222 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 174
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 19, 0

Conread position: 1-246
Cow position: chrX:6278487-6278738 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 53

Conread position: 1-252
Cow position: chrX:8925710-8925465 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 8

Conread position: 1-254
Cow position: chrX:23514004-23514258 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 31

Conread position: 1-264
Cow position: chrX:42171283-42171549 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 195
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 28, 53

Conread position: 1-265
Cow position: chrX:13647772-13648035 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 10, 53

Conread position: 1-266
Cow position: chrX:23497656-23497915 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 1-271
Cow position: chrX:28845844-28845587 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 199
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 33, 53

Conread position: 1-271
Cow position: chrX:42461733-42462005 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 19

Conread position: 1-271
Cow position: chrX:42994624-42994357 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 25

Conread position: 1-278
Cow position: chrX:7718867-7718590 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 53

Conread position: 1-278
Cow position: chrX:15139536-15139808 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 199
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 102, 8

Conread position: 1-278
Cow position: chrX:28865992-28866255 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 206
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 84, 71

Conread position: 1-281
Cow position: chrX:12116058-12115772 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 208
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 77, 46

Conread position: 1-281
Cow position: chrX:17498096-17497827 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 40

Conread position: 1-281
Cow position: chrX:38964119-38963843 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 54

Conread position: 1-294
Cow position: chrX:9855309-9855020 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 213
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 85, 53

Conread position: 2-247
Cow position: chrX:12405371-12405602 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 192
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 14, 51

Conread position: 2-271
Cow position: chrX:10831482-10831769 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 213
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 96, 54

Conread position: 2-271
Cow position: chrX:41878921-41879188 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 7

Conread position: 2-278
Cow position: chrX:878372-878634 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 201
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 84, 51

Conread position: 3-250
Cow position: chrX:46532492-46532745 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 17

Conread position: 3-281
Cow position: chrX:5017402-5017675 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 199
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 18, 52

Conread position: 3-294
Cow position: chrX:9954148-9953861 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 211
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 83, 51

Conread position: 4-234
Cow position: chrX:1503345-1503119 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 78, 49

Conread position: 4-240
Cow position: chrX:11856436-11856203 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 16

Conread position: 4-255
Cow position: chrX:34441442-34441691 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 49

Conread position: 4-255
Cow position: chrX:38936706-38936460 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 184
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 49, 0

Conread position: 4-267
Cow position: chrX:14973735-14973985 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 191
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 81, 13

Conread position: 4-267
Cow position: chrX:35288664-35288407 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 186
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 94, 62

Conread position: 4-268
Cow position: chrX:1616035-1616304 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 51

Conread position: 4-271
Cow position: chrX:14883950-14884221 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 197
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 94, 22

Conread position: 5-268
Cow position: chrX:15815093-15814845 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 193
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 93, 48

Conread position: 8-211
Cow position: chrX:37781107-37781315 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 86, 25

Conread position: 8-239
Cow position: chrX:20791813-20792043 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 164
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 48, 0

Conread position: 8-252
Cow position: chrX:34502926-34502682 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 12

Conread position: 10-159
Cow position: chrX:29723746-29723596 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 26, 47

Conread position: 10-245
Cow position: chrX:5900472-5900226 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 183
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 71, 43

Conread position: 10-254
Cow position: chrX:33855231-33855473 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 176
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 88, 27

Conread position: 10-256
Cow position: chrX:30832846-30833080 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 182
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 88, 43

Conread position: 10-283
Cow position: chrX:26440777-26441049 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 10

Conread position: 11-187
Cow position: chrX:22387240-22387421 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 89, 42

Conread position: 11-271
Cow position: chrX:38227091-38227347 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 197
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 60, 42

Conread position: 12-236
Cow position: chrX:36961644-36961414 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 174
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 82, 41

Conread position: 12-251
Cow position: chrX:17662592-17662834 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 41

Conread position: 12-251
Cow position: chrX:37232414-37232172 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 43

Conread position: 12-254
Cow position: chrX:21004682-21004444 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 122, 40

Conread position: 12-271
Cow position: chrX:20339890-20340148 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 28

Conread position: 12-272
Cow position: chrX:44397019-44396758 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 197
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 156, 34

Conread position: 12-273
Cow position: chrX:46315376-46315639 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 189
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 134, 44

Conread position: 13-182
Cow position: chrX:14003641-14003813 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 135, 40

Conread position: 13-248
Cow position: chrX:46072820-46073055 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 172
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 133, 40

Conread position: 13-271
Cow position: chrX:11717788-11718037 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 13-299
Cow position: chrX:19019105-19019396 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 216
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 23, 43

Conread position: 14-256
Cow position: chrX:43567919-43567697 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 171
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 12, 0

Conread position: 14-264
Cow position: chrX:14599531-14599283 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 23

Conread position: 14-268
Cow position: chrX:35387900-35388161 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 42

Conread position: 14-278
Cow position: chrX:5872318-5872050 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 32

Conread position: 15-255
Cow position: chrX:1810165-1810402 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 170
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 67, 57

Conread position: 20-185
Cow position: chrX:37955824-37955666 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 67, 36

Conread position: 20-255
Cow position: chrX:39558357-39558591 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 33

Conread position: 20-261
Cow position: chrX:35284613-35284371 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 190
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 71, 33

Conread position: 20-268
Cow position: chrX:28878175-28878416 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 195
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 14, 33

Conread position: 20-268
Cow position: chrX:34401991-34401743 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 33

Conread position: 20-271
Cow position: chrX:38439471-38439216 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 33

Conread position: 20-278
Cow position: chrX:27446689-27446425 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 253

Conread position: 21-267
Cow position: chrX:9997342-9997586 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 186
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 13, 33

Conread position: 22-225
Cow position: chrX:29542228-29542430 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 156
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 71, 31

Conread position: 22-254
Cow position: chrX:41884423-41884658 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 174
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 76, 31

Conread position: 22-272
Cow position: chrX:40557690-40557934 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 31

Conread position: 23-243
Cow position: chrX:10959406-10959631 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 163
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 17, 31

Conread position: 26-277
Cow position: chrX:11656079-11655822 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 27

Conread position: 28-149
Cow position: chrX:616277-616397 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 70, 25

Conread position: 28-240
Cow position: chrX:48684239-48684449 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 163
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 57, 120

Conread position: 28-253
Cow position: chrX:27431929-27432158 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 25

Conread position: 29-251
Cow position: chrX:2648369-2648587 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 27, 0

Conread position: 33-226
Cow position: chrX:27174977-27174782 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 156
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 67, 57

Conread position: 36-243
Cow position: chrX:16541694-16541905 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 165
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 60, 17

Conread position: 39-203
Cow position: chrX:24149615-24149450 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 59, 19

Conread position: 50-268
Cow position: chrX:11806049-11806271 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 165
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 48, 31

Conread position: 53-220
Cow position: chrX:16996463-16996300 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 132
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 33, 50

Conread position: 53-271
Cow position: chrX:22482725-22482946 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 169
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 40, 28

Conread position: 55-189
Cow position: chrX:27145582-27145447 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 43, 26

Conread position: 55-271
Cow position: chrX:19015397-19015185 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 168
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 43, 35

Conread position: 56-238
Cow position: chrX:16324006-16324187 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 42, 34

Conread position: 56-271
Cow position: chrX:6544214-6543999 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 164
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 42, 25

Conread position: 64-278
Cow position: chrX:37072358-37072142 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 158
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 34, 17

Conread position: 68-271
Cow position: chrX:18989850-18990057 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 146
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 10, 19

Conread position: 68-281
Cow position: chrX:35268828-35268621 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 164
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 30, 22

Show alignments to all cow chromosomes.