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Cow genome map

           
Conread name:
           
Bra1-PBL_19_B02
        

               
Conread position:
               
89-375
               

               
Cow position:
               
chr9:20465832-20466101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 83
               

               
Conread position:
               
89-394
               

               
Cow position:
               
chr9:52407294-52406994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
172, 199
               

               
Conread position:
               
89-406
               

               
Cow position:
               
chr9:18380990-18380680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 69
               

               
Conread position:
               
89-433
               

               
Cow position:
               
chr9:46981105-46981436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
124, 23
               

               
Conread position:
               
91-375
               

               
Cow position:
               
chr9:32307111-32307391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
206, 74
               

               
Conread position:
               
92-343
               

               
Cow position:
               
chr9:6596110-6596350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
92-375
               

               
Cow position:
               
chr9:64106028-64105746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
92-426
               

               
Cow position:
               
chr9:38793138-38792808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
164, 61
               

               
Conread position:
               
92-442
               

               
Cow position:
               
chr9:48730552-48730204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
126, 13
               

               
Conread position:
               
94-294
               

               
Cow position:
               
chr9:43871101-43870900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
94-316
               

               
Cow position:
               
chr9:55084175-55084398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
53, 119
               

               
Conread position:
               
94-321
               

               
Cow position:
               
chr9:1520615-1520841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
148, 60
               

               
Conread position:
               
94-368
               

               
Cow position:
               
chr9:34284070-34283803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
15, 11
               

               
Conread position:
               
94-378
               

               
Cow position:
               
chr9:9815537-9815253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
71, 38
               

               
Conread position:
               
94-394
               

               
Cow position:
               
chr9:5433760-5433469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
73, 91
               

               
Conread position:
               
94-394
               

               
Cow position:
               
chr9:60081028-60080716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
123, 72
               

               
Conread position:
               
94-400
               

               
Cow position:
               
chr9:32676802-32676494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 66
               

               
Conread position:
               
94-403
               

               
Cow position:
               
chr9:8901101-8901416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
94-403
               

               
Cow position:
               
chr9:26477338-26477025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
44, 11
               

               
Conread position:
               
94-406
               

               
Cow position:
               
chr9:34410273-34410581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
94-424
               

               
Cow position:
               
chr9:30402298-30402636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
52, 74
               

               
Conread position:
               
94-438
               

               
Cow position:
               
chr9:40005598-40005254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
69, 64
               

               
Conread position:
               
96-375
               

               
Cow position:
               
chr9:5836275-5835993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
130, 61
               

               
Conread position:
               
96-400
               

               
Cow position:
               
chr9:41785341-41785038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
57, 188
               

               
Conread position:
               
98-406
               

               
Cow position:
               
chr9:54681625-54681332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
279, 56
               

               
Conread position:
               
100-372
               

               
Cow position:
               
chr9:29006679-29006405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 204
               

               
Conread position:
               
100-388
               

               
Cow position:
               
chr9:58614601-58614327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
256, 47
               

               
Conread position:
               
100-390
               

               
Cow position:
               
chr9:19903196-19902919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
277, 24
               

               
Conread position:
               
106-394
               

               
Cow position:
               
chr9:15805810-15806102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
54, 61
               

               
Conread position:
               
107-375
               

               
Cow position:
               
chr9:31347065-31346792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
51, 112
               

               
Conread position:
               
107-387
               

               
Cow position:
               
chr9:53139023-53139304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
84, 47
               

               
Conread position:
               
107-392
               

               
Cow position:
               
chr9:20942500-20942793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
99, 49
               

               
Conread position:
               
107-394
               

               
Cow position:
               
chr9:3573578-3573288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
202, 146
               

               
Conread position:
               
107-394
               

               
Cow position:
               
chr9:40215351-40215071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
189, 45
               

               
Conread position:
               
107-396
               

               
Cow position:
               
chr9:1877898-1878176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
107-399
               

               
Cow position:
               
chr9:42497935-42497647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
105, 53
               

               
Conread position:
               
107-436
               

               
Cow position:
               
chr9:4630212-4629894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
197, 16
               

               
Conread position:
               
107-442
               

               
Cow position:
               
chr9:4262983-4263316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
191, 57
               

               
Conread position:
               
109-390
               

               
Cow position:
               
chr9:20091155-20090888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
97, 42
               

               
Conread position:
               
110-375
               

               
Cow position:
               
chr9:17872001-17872264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 5
               

               
Conread position:
               
111-371
               

               
Cow position:
               
chr9:21387528-21387277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
58, 71
               

               
Conread position:
               
112-296
               

               
Cow position:
               
chr9:32981967-32982152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
102, 52
               

               
Conread position:
               
112-305
               

               
Cow position:
               
chr9:28754924-28754732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
112-307
               

               
Cow position:
               
chr9:5763527-5763718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
112-311
               

               
Cow position:
               
chr9:49293041-49293237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
161, 45
               

               
Conread position:
               
112-312
               

               
Cow position:
               
chr9:19493358-19493561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
112-314
               

               
Cow position:
               
chr9:7634378-7634176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
112-319
               

               
Cow position:
               
chr9:46316679-46316881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
112-321
               

               
Cow position:
               
chr9:4267879-4268084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
112-321
               

               
Cow position:
               
chr9:9654207-9654409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
112-328
               

               
Cow position:
               
chr9:31078978-31079186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
112-329
               

               
Cow position:
               
chr9:42445875-42446090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 180
               

               
Conread position:
               
112-329
               

               
Cow position:
               
chr9:54528616-54528403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
205, 49
               

               
Conread position:
               
112-360
               

               
Cow position:
               
chr9:64091789-64091544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
56, 46
               

               
Conread position:
               
112-371
               

               
Cow position:
               
chr9:54493243-54492985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
47, 186
               

               
Conread position:
               
112-372
               

               
Cow position:
               
chr9:29185028-29185294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 156
               

               
Conread position:
               
112-375
               

               
Cow position:
               
chr9:3186232-3185972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
112-375
               

               
Cow position:
               
chr9:11123378-11123637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
173, 131
               

               
Conread position:
               
112-375
               

               
Cow position:
               
chr9:28726616-28726886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
112-375
               

               
Cow position:
               
chr9:30124025-30123773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
112-378
               

               
Cow position:
               
chr9:22443523-22443783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
112-388
               

               
Cow position:
               
chr9:51566390-51566668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
186, 26
               

               
Conread position:
               
112-389
               

               
Cow position:
               
chr9:21460048-21460324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
51, 8
               

               
Conread position:
               
112-389
               

               
Cow position:
               
chr9:45285422-45285710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
112-392
               

               
Cow position:
               
chr9:13169557-13169839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 46
               

               
Conread position:
               
112-393
               

               
Cow position:
               
chr9:33114451-33114164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
201, 46
               

               
Conread position:
               
112-394
               

               
Cow position:
               
chr9:5263606-5263327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
43, 54
               

               
Conread position:
               
112-394
               

               
Cow position:
               
chr9:6338900-6338617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
148, 192
               

               
Conread position:
               
112-394
               

               
Cow position:
               
chr9:8998461-8998177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
43, 170
               

               
Conread position:
               
112-394
               

               
Cow position:
               
chr9:11168834-11168569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
112-394
               

               
Cow position:
               
chr9:17799734-17799459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
59, 155
               

               
Conread position:
               
112-394
               

               
Cow position:
               
chr9:51620542-51620268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
195, 57
               

               
Conread position:
               
112-396
               

               
Cow position:
               
chr9:5227066-5227336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
46, 64
               

               
Conread position:
               
112-396
               

               
Cow position:
               
chr9:57897014-57897276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
276, 46
               

               
Conread position:
               
112-396
               

               
Cow position:
               
chr9:61303108-61302827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
51, 187
               

               
Conread position:
               
112-397
               

               
Cow position:
               
chr9:49863446-49863735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
46, 35
               

               
Conread position:
               
112-400
               

               
Cow position:
               
chr9:34286907-34286618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 277
               

               
Conread position:
               
112-400
               

               
Cow position:
               
chr9:60394946-60395231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
186, 43
               

               
Conread position:
               
112-402
               

               
Cow position:
               
chr9:10144372-10144666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
194, 93
               

               
Conread position:
               
112-403
               

               
Cow position:
               
chr9:26279067-26279359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
98, 34
               

               
Conread position:
               
112-404
               

               
Cow position:
               
chr9:19067889-19067583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
159, 113
               

               
Conread position:
               
112-404
               

               
Cow position:
               
chr9:28747418-28747702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
112-405
               

               
Cow position:
               
chr9:9403071-9403357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
134, 48
               

               
Conread position:
               
112-406
               

               
Cow position:
               
chr9:6840106-6839802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
112-406
               

               
Cow position:
               
chr9:23955879-23956164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
112-407
               

               
Cow position:
               
chr9:53762803-53762510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
46, 60
               

               
Conread position:
               
112-409
               

               
Cow position:
               
chr9:9595850-9596142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
117, 45
               

               
Conread position:
               
112-413
               

               
Cow position:
               
chr9:50606844-50607125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
112-415
               

               
Cow position:
               
chr9:33598085-33597775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
185, 41
               

               
Conread position:
               
112-426
               

               
Cow position:
               
chr9:20579495-20579796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
32, 43
               

               
Conread position:
               
112-434
               

               
Cow position:
               
chr9:33584578-33584901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 65
               

               
Conread position:
               
112-437
               

               
Cow position:
               
chr9:47500105-47500416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
112-439
               

               
Cow position:
               
chr9:25964726-25965058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
54, 45
               

               
Conread position:
               
113-299
               

               
Cow position:
               
chr9:60027305-60027117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
113-305
               

               
Cow position:
               
chr9:5219065-5219259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
105, 51
               

               
Conread position:
               
113-316
               

               
Cow position:
               
chr9:21888270-21888071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
183, 42
               

               
Conread position:
               
113-317
               

               
Cow position:
               
chr9:19758812-19758621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
185, 45
               

               
Conread position:
               
113-322
               

               
Cow position:
               
chr9:18342834-18342630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
113-352
               

               
Cow position:
               
chr9:33119782-33120025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
113-355
               

               
Cow position:
               
chr9:13205462-13205709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
24, 119
               

               
Conread position:
               
113-355
               

               
Cow position:
               
chr9:20848035-20847804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
185, 124
               

               
Conread position:
               
113-368
               

               
Cow position:
               
chr9:23388574-23388830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
183, 23
               

               
Conread position:
               
113-372
               

               
Cow position:
               
chr9:5456074-5456326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
148, 34
               

               
Conread position:
               
113-375
               

               
Cow position:
               
chr9:33218846-33219114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
65, 43
               

               
Conread position:
               
113-375
               

               
Cow position:
               
chr9:34689492-34689762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
38, 115
               

               
Conread position:
               
113-375
               

               
Cow position:
               
chr9:34957949-34958209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 185
               

               
Conread position:
               
113-391
               

               
Cow position:
               
chr9:35028063-35028340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
114, 41
               

               
Conread position:
               
113-393
               

               
Cow position:
               
chr9:26344864-26345137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
180, 39
               

               
Conread position:
               
113-394
               

               
Cow position:
               
chr9:3378856-3378585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
264, 45
               

               
Conread position:
               
113-394
               

               
Cow position:
               
chr9:9552196-9551912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
182, 223
               

               
Conread position:
               
113-394
               

               
Cow position:
               
chr9:27279412-27279130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
54, 34
               

               
Conread position:
               
113-394
               

               
Cow position:
               
chr9:36490788-36491080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
49, 73
               

               
Conread position:
               
113-394
               

               
Cow position:
               
chr9:55795864-55795582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
37, 119
               

               
Conread position:
               
113-396
               

               
Cow position:
               
chr9:53109356-53109073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
190, 112
               

               
Conread position:
               
113-400
               

               
Cow position:
               
chr9:34697202-34697484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
154, 34
               

               
Conread position:
               
113-404
               

               
Cow position:
               
chr9:8723900-8723609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
35, 103
               

               
Conread position:
               
113-404
               

               
Cow position:
               
chr9:32669844-32670131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
196, 51
               

               
Conread position:
               
113-406
               

               
Cow position:
               
chr9:13670740-13670447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
39, 24
               

               
Conread position:
               
113-406
               

               
Cow position:
               
chr9:41728362-41728072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 26
               

               
Conread position:
               
113-413
               

               
Cow position:
               
chr9:45141498-45141792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 37
               

               
Conread position:
               
113-414
               

               
Cow position:
               
chr9:12910298-12910596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
113-426
               

               
Cow position:
               
chr9:19555477-19555184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
113-433
               

               
Cow position:
               
chr9:44396762-44396444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
18, 11
               

               
Conread position:
               
113-438
               

               
Cow position:
               
chr9:6189268-6189582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
114-341
               

               
Cow position:
               
chr9:3738119-3738343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
40, 27
               

               
Conread position:
               
114-372
               

               
Cow position:
               
chr9:41283116-41282858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
183, 40
               

               
Conread position:
               
114-375
               

               
Cow position:
               
chr9:43159844-43159598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
93, 46
               

               
Conread position:
               
114-389
               

               
Cow position:
               
chr9:5327358-5327091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
114-389
               

               
Cow position:
               
chr9:61022713-61022448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
182, 54
               

               
Conread position:
               
114-393
               

               
Cow position:
               
chr9:48628133-48627848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 0
               

               
Conread position:
               
114-393
               

               
Cow position:
               
chr9:58979500-58979229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
61, 52
               

               
Conread position:
               
114-394
               

               
Cow position:
               
chr9:35547374-35547089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
114-401
               

               
Cow position:
               
chr9:11299588-11299855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
114-404
               

               
Cow position:
               
chr9:4341067-4341342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
114-404
               

               
Cow position:
               
chr9:9573434-9573133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
114-404
               

               
Cow position:
               
chr9:11309965-11309672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
77, 36
               

               
Conread position:
               
114-407
               

               
Cow position:
               
chr9:40303027-40303324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 48
               

               
Conread position:
               
114-407
               

               
Cow position:
               
chr9:52267654-52267950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
147, 33
               

               
Conread position:
               
114-410
               

               
Cow position:
               
chr9:6397679-6397978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
51, 36
               

               
Conread position:
               
114-419
               

               
Cow position:
               
chr9:45728881-45728572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
91, 39
               

               
Conread position:
               
114-420
               

               
Cow position:
               
chr9:37934134-37934439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
147, 37
               

               
Conread position:
               
114-424
               

               
Cow position:
               
chr9:6192359-6192663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
123, 60
               

               
Conread position:
               
115-372
               

               
Cow position:
               
chr9:58451978-58452224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
115-394
               

               
Cow position:
               
chr9:9311962-9311683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
262, 268
               

               
Conread position:
               
115-404
               

               
Cow position:
               
chr9:39011367-39011651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
10, 32
               

               
Conread position:
               
115-406
               

               
Cow position:
               
chr9:13743831-13744123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
152, 30
               

               
Conread position:
               
115-436
               

               
Cow position:
               
chr9:28263619-28263298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
92, 32
               

               
Conread position:
               
116-269
               

               
Cow position:
               
chr9:23431043-23431198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
52, 110
               

               
Conread position:
               
116-274
               

               
Cow position:
               
chr9:43875613-43875774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
116-321
               

               
Cow position:
               
chr9:50139387-50139183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
91, 40
               

               
Conread position:
               
116-356
               

               
Cow position:
               
chr9:44831952-44832186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
179, 113
               

               
Conread position:
               
116-389
               

               
Cow position:
               
chr9:29339222-29339483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
182, 81
               

               
Conread position:
               
116-399
               

               
Cow position:
               
chr9:9460076-9459808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
116-400
               

               
Cow position:
               
chr9:6933973-6934264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
181, 48
               

               
Conread position:
               
116-435
               

               
Cow position:
               
chr9:56032218-56032533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
190, 49
               

               
Conread position:
               
117-350
               

               
Cow position:
               
chr9:56011598-56011371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
117-372
               

               
Cow position:
               
chr9:29194923-29195186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
38, 19
               

               
Conread position:
               
118-424
               

               
Cow position:
               
chr9:59013234-59013543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
46, 116
               

               
Conread position:
               
119-394
               

               
Cow position:
               
chr9:8636766-8636502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
120-321
               

               
Cow position:
               
chr9:44770101-44770293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
49, 95
               

               
Conread position:
               
120-355
               

               
Cow position:
               
chr9:7952998-7952760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
178, 37
               

               
Conread position:
               
120-358
               

               
Cow position:
               
chr9:21080659-21080430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
120-389
               

               
Cow position:
               
chr9:43757638-43757373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
92, 44
               

               
Conread position:
               
120-391
               

               
Cow position:
               
chr9:36410261-36410523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
141, 40
               

               
Conread position:
               
120-391
               

               
Cow position:
               
chr9:55256454-55256722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
57, 45
               

               
Conread position:
               
120-396
               

               
Cow position:
               
chr9:34374833-34375105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
178, 16
               

               
Conread position:
               
120-400
               

               
Cow position:
               
chr9:6952204-6951932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
41, 110
               

               
Conread position:
               
120-407
               

               
Cow position:
               
chr9:27356022-27355728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
120-407
               

               
Cow position:
               
chr9:27358808-27358514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
120-407
               

               
Cow position:
               
chr9:56453429-56453157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
178, 16
               

               
Conread position:
               
120-411
               

               
Cow position:
               
chr9:47590882-47591177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
87, 70
               

               
Conread position:
               
121-321
               

               
Cow position:
               
chr9:9405953-9406155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
121-322
               

               
Cow position:
               
chr9:1938228-1938021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
121-392
               

               
Cow position:
               
chr9:17840579-17840853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
121-394
               

               
Cow position:
               
chr9:6954151-6954429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
46, 37
               

               
Conread position:
               
122-299
               

               
Cow position:
               
chr9:58670833-58670663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
122-310
               

               
Cow position:
               
chr9:54615205-54615391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
7, 108
               

               
Conread position:
               
122-393
               

               
Cow position:
               
chr9:37199218-37198952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 28
               

               
Conread position:
               
122-395
               

               
Cow position:
               
chr9:9686318-9686595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
7, 38
               

               
Conread position:
               
122-403
               

               
Cow position:
               
chr9:36453446-36453723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
123-389
               

               
Cow position:
               
chr9:52754763-52755023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
165, 24
               

               
Conread position:
               
123-394
               

               
Cow position:
               
chr9:5342158-5342422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
123-394
               

               
Cow position:
               
chr9:9723790-9724056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
144, 32
               

               
Conread position:
               
123-407
               

               
Cow position:
               
chr9:13460325-13460596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
61, 92
               

               
Conread position:
               
123-428
               

               
Cow position:
               
chr9:8628822-8629125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
268, 103
               

               
Conread position:
               
124-372
               

               
Cow position:
               
chr9:55287799-55288043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
188, 42
               

               
Conread position:
               
124-375
               

               
Cow position:
               
chr9:52578443-52578695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
60, 45
               

               
Conread position:
               
124-394
               

               
Cow position:
               
chr9:26403877-26403617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
51, 23
               

               
Conread position:
               
124-403
               

               
Cow position:
               
chr9:8834037-8834316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
86, 31
               

               
Conread position:
               
125-322
               

               
Cow position:
               
chr9:53750863-53751063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
51, 39
               

               
Conread position:
               
125-393
               

               
Cow position:
               
chr9:29819807-29819551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
125-400
               

               
Cow position:
               
chr9:25557067-25556801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
37, 145
               

               
Conread position:
               
127-371
               

               
Cow position:
               
chr9:33823209-33822964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
37, 7
               

               
Conread position:
               
127-396
               

               
Cow position:
               
chr9:15215596-15215868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
40, 28
               

               
Conread position:
               
128-346
               

               
Cow position:
               
chr9:51204822-51204594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
20, 224
               

               
Conread position:
               
129-435
               

               
Cow position:
               
chr9:34024789-34024479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
175, 291
               

               
Conread position:
               
130-388
               

               
Cow position:
               
chr9:59997946-59998200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
30, 100
               

               
Conread position:
               
132-365
               

               
Cow position:
               
chr9:33542141-33541905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
100, 34
               

               
Conread position:
               
132-394
               

               
Cow position:
               
chr9:9516678-9516926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
195, 72
               

               
Conread position:
               
133-394
               

               
Cow position:
               
chr9:7805879-7806130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
136-434
               

               
Cow position:
               
chr9:63361635-63361929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
14, 162
               

               
Conread position:
               
137-397
               

               
Cow position:
               
chr9:5110940-5110677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
25, 16
               

               
Conread position:
               
137-399
               

               
Cow position:
               
chr9:61351259-61351527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
176, 23
               

               
Conread position:
               
147-394
               

               
Cow position:
               
chr9:57131565-57131322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
148-394
               

               
Cow position:
               
chr9:32387913-32388161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
149-321
               

               
Cow position:
               
chr9:8562889-8562720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
149-336
               

               
Cow position:
               
chr9:49545298-49545483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
29, 42
               

               
Conread position:
               
152-368
               

               
Cow position:
               
chr9:47214479-47214700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
152, 7
               

               
Conread position:
               
154-314
               

               
Cow position:
               
chr9:39758583-39758427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
149, 123
               

               
Conread position:
               
156-389
               

               
Cow position:
               
chr9:24887270-24887034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
156-395
               

               
Cow position:
               
chr9:25804896-25804649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
7, 122
               

               
Conread position:
               
156-404
               

               
Cow position:
               
chr9:5104340-5104597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
145, 84
               

               
Conread position:
               
158-390
               

               
Cow position:
               
chr9:12337962-12337728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
139, 6
               

               
Conread position:
               
158-407
               

               
Cow position:
               
chr9:52763701-52763941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
103, 8
               

               
Conread position:
               
158-436
               

               
Cow position:
               
chr9:55494925-55495207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
109, 114
               

               
Conread position:
               
161-406
               

               
Cow position:
               
chr9:22466830-22466594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
161-412
               

               
Cow position:
               
chr9:52518765-52519016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
51, 112
               

               
Conread position:
               
161-438
               

               
Cow position:
               
chr9:8992121-8992400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
166-387
               

               
Cow position:
               
chr9:14974866-14975098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
61, 56
               

               
Conread position:
               
166-390
               

               
Cow position:
               
chr9:31359656-31359432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
53, 25
               

               
Conread position:
               
166-393
               

               
Cow position:
               
chr9:33151795-33151574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
166-396
               

               
Cow position:
               
chr9:4241459-4241231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
105, 137
               

               
Conread position:
               
166-401
               

               
Cow position:
               
chr9:14738302-14738069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
91, 105
               

               
Conread position:
               
166-433
               

               
Cow position:
               
chr9:59897641-59897379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
211, 15
               

               
Conread position:
               
167-317
               

               
Cow position:
               
chr9:16137290-16137440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
168-321
               

               
Cow position:
               
chr9:6293646-6293492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
168-387
               

               
Cow position:
               
chr9:44758881-44759096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
99, 28
               

               
Conread position:
               
169-390
               

               
Cow position:
               
chr9:62631620-62631839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
20, 110
               

               
Conread position:
               
169-408
               

               
Cow position:
               
chr9:59699497-59699741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
111, 193
               

               
Conread position:
               
170-406
               

               
Cow position:
               
chr9:58131905-58132136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
171-321
               

               
Cow position:
               
chr9:55354659-55354509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
174-375
               

               
Cow position:
               
chr9:22165669-22165874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
117, 7
               

               
Conread position:
               
175-372
               

               
Cow position:
               
chr9:11098412-11098605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
131, 39
               

               
Conread position:
               
176-388
               

               
Cow position:
               
chr9:27345541-27345759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
178-423
               

               
Cow position:
               
chr9:26394312-26394553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
179-367
               

               
Cow position:
               
chr9:58368957-58369142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
179-394
               

               
Cow position:
               
chr9:36628158-36627946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
179-431
               

               
Cow position:
               
chr9:33101075-33101312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
181-394
               

               
Cow position:
               
chr9:44822286-44822498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
181-394
               

               
Cow position:
               
chr9:63784876-63785085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
181-395
               

               
Cow position:
               
chr9:3924481-3924279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
84, 49
               

               
Conread position:
               
181-404
               

               
Cow position:
               
chr9:42586518-42586734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
181-404
               

               
Cow position:
               
chr9:44584631-44584413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
211, 117
               

               
Conread position:
               
181-427
               

               
Cow position:
               
chr9:39149117-39148871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
206, 120
               

               
Conread position:
               
182-375
               

               
Cow position:
               
chr9:21292370-21292564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
182-391
               

               
Cow position:
               
chr9:35832582-35832787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
186-360
               

               
Cow position:
               
chr9:43202367-43202193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
186-429
               

               
Cow position:
               
chr9:11380616-11380854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
189-375
               

               
Cow position:
               
chr9:34707282-34707467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
190-388
               

               
Cow position:
               
chr9:40603697-40603497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
190-393
               

               
Cow position:
               
chr9:42508861-42508653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
192-394
               

               
Cow position:
               
chr9:19771393-19771184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
11, 166
               

               
Conread position:
               
193-375
               

               
Cow position:
               
chr9:44944452-44944630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
93, 72
               

               
Conread position:
               
193-388
               

               
Cow position:
               
chr9:12773716-12773524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
194-394
               

               
Cow position:
               
chr9:13993792-13993587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
194-400
               

               
Cow position:
               
chr9:19718315-19718516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
195-375
               

               
Cow position:
               
chr9:24079326-24079148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
195-400
               

               
Cow position:
               
chr9:34917163-34917360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
194, 14
               

               
Conread position:
               
197-371
               

               
Cow position:
               
chr9:64310757-64310932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
101, 32
               

               
Conread position:
               
198-402
               

               
Cow position:
               
chr9:5186846-5187043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
199-375
               

               
Cow position:
               
chr9:1712686-1712865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
201-400
               

               
Cow position:
               
chr9:55807649-55807453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
204-413
               

               
Cow position:
               
chr9:32052291-32052079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
205-396
               

               
Cow position:
               
chr9:40984519-40984326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
206-404
               

               
Cow position:
               
chr9:32662018-32662222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
214-352
               

               
Cow position:
               
chr9:54630315-54630179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
72, 64
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr9:61300972-61301158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
214-433
               

               
Cow position:
               
chr9:48900831-48901052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
84, 143
               

               
Conread position:
               
215-389
               

               
Cow position:
               
chr9:37950893-37951071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
215-390
               

               
Cow position:
               
chr9:54677268-54677085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
215-394
               

               
Cow position:
               
chr9:151872-151690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
46, 26
               

               
Conread position:
               
215-394
               

               
Cow position:
               
chr9:2397811-2397634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
46, 57
               

               
Conread position:
               
215-394
               

               
Cow position:
               
chr9:16115604-16115781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
46, 56
               

               
Conread position:
               
215-400
               

               
Cow position:
               
chr9:5068845-5068655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
83, 173
               

               
Conread position:
               
215-404
               

               
Cow position:
               
chr9:6929787-6929982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
46, 56
               

               
Conread position:
               
215-404
               

               
Cow position:
               
chr9:28315433-28315240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 57
               

               
Conread position:
               
215-404
               

               
Cow position:
               
chr9:49213404-49213212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
46, 78
               

               
Conread position:
               
215-404
               

               
Cow position:
               
chr9:58255497-58255311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
52, 61
               

               
Conread position:
               
215-406
               

               
Cow position:
               
chr9:22447290-22447481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
83, 150
               

               
Conread position:
               
215-407
               

               
Cow position:
               
chr9:9557690-9557494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
215-437
               

               
Cow position:
               
chr9:41470094-41470317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
52, 61
               

               
Conread position:
               
216-372
               

               
Cow position:
               
chr9:32773216-32773068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
216-392
               

               
Cow position:
               
chr9:34666444-34666277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
172, 13
               

               
Conread position:
               
217-375
               

               
Cow position:
               
chr9:45740140-45740301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
217-404
               

               
Cow position:
               
chr9:44918279-44918462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
135, 8
               

               
Conread position:
               
217-416
               

               
Cow position:
               
chr9:34265097-34264886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
81, 149
               

               
Conread position:
               
218-355
               

               
Cow position:
               
chr9:11873303-11873437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
219-375
               

               
Cow position:
               
chr9:52998380-52998535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
86, 34
               

               
Conread position:
               
219-400
               

               
Cow position:
               
chr9:36401665-36401842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
219-403
               

               
Cow position:
               
chr9:26388208-26388032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
219-404
               

               
Cow position:
               
chr9:61019362-61019551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
49, 68
               

               
Conread position:
               
219-405
               

               
Cow position:
               
chr9:34760364-34760553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
58, 82
               

               
Conread position:
               
219-440
               

               
Cow position:
               
chr9:3198187-3198401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
170, 18
               

               
Conread position:
               
220-400
               

               
Cow position:
               
chr9:11447809-11447990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
48, 42
               

               
Conread position:
               
220-426
               

               
Cow position:
               
chr9:36457998-36457795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
68, 64
               

               
Conread position:
               
222-416
               

               
Cow position:
               
chr9:19656979-19657170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
45, 50
               

               
Conread position:
               
226-413
               

               
Cow position:
               
chr9:9495149-9494965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
228-404
               

               
Cow position:
               
chr9:47510579-47510757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
82, 53
               

               
Conread position:
               
230-394
               

               
Cow position:
               
chr9:53323795-53323964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
230-405
               

               
Cow position:
               
chr9:28773128-28772954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
230-407
               

               
Cow position:
               
chr9:12269019-12268843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
143, 43
               

               
Conread position:
               
231-404
               

               
Cow position:
               
chr9:1917967-1917795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
158, 56
               

               
Conread position:
               
237-402
               

               
Cow position:
               
chr9:30194993-30194827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
57, 65
               
Show alignments to all cow chromosomes.