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Cow genome map

           
Conread name:
           
Bra1-olf_071_B12
        

               
Conread position:
               
1-155
               

               
Cow position:
               
chr1:79004093-79003944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
117, 38
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr1:80584551-80584365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
116, 24
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:81481260-81481471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
118, 41
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr1:4581208-4581417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
118, 38
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr1:90904634-90904847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
147, 38
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr1:37886690-37886916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
118, 38
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr1:77232456-77232674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
118, 38
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr1:81580299-81580066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
117, 38
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr1:56618533-56618763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
117, 38
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr1:98512048-98511813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
118, 31
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr1:89449022-89448759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
118, 38
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr1:78838917-78838656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
118, 38
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:50930857-50931125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
100, 41
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr1:87197942-87197674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
118, 38
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr1:22192893-22192608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
22, 43
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr1:97090448-97090167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
118, 38
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr1:3882337-3882626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
118, 38
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr1:45553121-45553392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
118, 38
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr1:89381397-89381101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 38
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr1:101280616-101280885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr1:89388466-89388155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
92, 38
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr1:101837164-101836857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
21, 32
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr1:8737-8433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
116, 41
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr1:39509936-39510240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 38
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr1:24132941-24133247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 38
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr1:48105314-48105629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 38
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr1:47233356-47233671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 38
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr1:81568906-81569231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 38
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr1:93499742-93499426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 31
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:1980993-1981309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 15
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:34771384-34771703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
116, 24
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:42873828-42874146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
98, 38
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:43388930-43389247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 38
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:52995148-52994824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
49, 222
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:55230098-55229785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
116, 38
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:62964388-62964080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 38
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:64678817-64678498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 38
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:69264930-69264622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
116, 41
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:78857207-78857522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 41
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:79844587-79844269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 38
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:81613511-81613186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 38
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:84255889-84255555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 38
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:88618720-88618394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
31, 40
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:89076508-89076835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
17, 41
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr1:98031044-98030715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 31
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:16961888-16962217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 38
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr1:74822573-74822246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 36
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr1:63434689-63435020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 16
               

               
Conread position:
               
2-295
               

               
Cow position:
               
chr1:81290627-81290338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 37
               

               
Conread position:
               
2-314
               

               
Cow position:
               
chr1:84811818-84812128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
117, 37
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chr1:25383789-25383468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 37
               

               
Conread position:
               
2-319
               

               
Cow position:
               
chr1:90975968-90976279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
79, 30
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr1:13637542-13637870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
97, 37
               

               
Conread position:
               
2-322
               

               
Cow position:
               
chr1:75744983-75744661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 46
               

               
Conread position:
               
3-247
               

               
Cow position:
               
chr1:79640166-79640418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
20, 38
               

               
Conread position:
               
3-268
               

               
Cow position:
               
chr1:24777874-24778134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
116, 39
               

               
Conread position:
               
3-274
               

               
Cow position:
               
chr1:51968583-51968306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
116, 109
               

               
Conread position:
               
3-284
               

               
Cow position:
               
chr1:91811898-91811621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 40
               

               
Conread position:
               
3-302
               

               
Cow position:
               
chr1:20667621-20667921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
20, 40
               

               
Conread position:
               
3-311
               

               
Cow position:
               
chr1:70538731-70538414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 36
               

               
Conread position:
               
3-312
               

               
Cow position:
               
chr1:12464544-12464853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
116, 36
               

               
Conread position:
               
3-314
               

               
Cow position:
               
chr1:78811158-78810844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 36
               

               
Conread position:
               
3-317
               

               
Cow position:
               
chr1:61885033-61884721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 36
               

               
Conread position:
               
3-319
               

               
Cow position:
               
chr1:100706246-100705936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
95, 39
               

               
Conread position:
               
3-322
               

               
Cow position:
               
chr1:15334011-15333678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
86, 41
               

               
Conread position:
               
3-322
               

               
Cow position:
               
chr1:72304269-72304570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
116, 29
               

               
Conread position:
               
3-322
               

               
Cow position:
               
chr1:89509801-89510132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 36
               

               
Conread position:
               
3-326
               

               
Cow position:
               
chr1:56225589-56225272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 36
               

               
Conread position:
               
4-182
               

               
Cow position:
               
chr1:31855128-31855299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
115, 35
               

               
Conread position:
               
4-189
               

               
Cow position:
               
chr1:89158006-89158200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
113, 35
               

               
Conread position:
               
4-194
               

               
Cow position:
               
chr1:35671658-35671466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
115, 35
               

               
Conread position:
               
4-231
               

               
Cow position:
               
chr1:68845050-68845269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
113, 35
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr1:26934153-26934391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
138, 35
               

               
Conread position:
               
4-252
               

               
Cow position:
               
chr1:89350084-89349829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 35
               

               
Conread position:
               
4-317
               

               
Cow position:
               
chr1:71078839-71079151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
4-318
               

               
Cow position:
               
chr1:71643541-71643859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
19, 29
               

               
Conread position:
               
4-319
               

               
Cow position:
               
chr1:39068837-39069147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
113, 38
               

               
Conread position:
               
4-322
               

               
Cow position:
               
chr1:7971531-7971231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
103, 40
               

               
Conread position:
               
4-322
               

               
Cow position:
               
chr1:54206696-54207018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
17, 36
               

               
Conread position:
               
4-322
               

               
Cow position:
               
chr1:70380024-70380345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 33
               

               
Conread position:
               
4-322
               

               
Cow position:
               
chr1:100800473-100800156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 36
               

               
Conread position:
               
5-200
               

               
Cow position:
               
chr1:80841764-80841571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
114, 34
               

               
Conread position:
               
5-209
               

               
Cow position:
               
chr1:50992051-50991844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
114, 37
               

               
Conread position:
               
5-215
               

               
Cow position:
               
chr1:82513234-82513452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
18, 35
               

               
Conread position:
               
5-219
               

               
Cow position:
               
chr1:78066419-78066642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
114, 34
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr1:91023349-91023615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
114, 34
               

               
Conread position:
               
5-273
               

               
Cow position:
               
chr1:17196509-17196783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
114, 34
               

               
Conread position:
               
5-283
               

               
Cow position:
               
chr1:42175845-42175560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 34
               

               
Conread position:
               
5-314
               

               
Cow position:
               
chr1:45555483-45555172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 27
               

               
Conread position:
               
5-319
               

               
Cow position:
               
chr1:5135591-5135888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
5-319
               

               
Cow position:
               
chr1:68618815-68619134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 13
               

               
Conread position:
               
5-319
               

               
Cow position:
               
chr1:70422423-70422104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
33, 11
               

               
Conread position:
               
5-320
               

               
Cow position:
               
chr1:98551837-98551516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 20
               

               
Conread position:
               
5-322
               

               
Cow position:
               
chr1:42887159-42887462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 34
               

               
Conread position:
               
5-322
               

               
Cow position:
               
chr1:43505647-43505324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 34
               

               
Conread position:
               
5-323
               

               
Cow position:
               
chr1:10633164-10632853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
112, 34
               

               
Conread position:
               
6-247
               

               
Cow position:
               
chr1:89786028-89785781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 35
               

               
Conread position:
               
6-269
               

               
Cow position:
               
chr1:31272325-31272591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
113, 36
               

               
Conread position:
               
6-287
               

               
Cow position:
               
chr1:59519033-59518751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
8, 34
               

               
Conread position:
               
6-312
               

               
Cow position:
               
chr1:11226129-11226435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
25, 35
               

               
Conread position:
               
7-279
               

               
Cow position:
               
chr1:80311558-80311310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
7-322
               

               
Cow position:
               
chr1:29935270-29935581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 33
               

               
Conread position:
               
7-322
               

               
Cow position:
               
chr1:66430407-66430097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
110, 35
               

               
Conread position:
               
7-322
               

               
Cow position:
               
chr1:82884279-82884589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 32
               

               
Conread position:
               
8-255
               

               
Cow position:
               
chr1:18780211-18780470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
15, 37
               

               
Conread position:
               
11-241
               

               
Cow position:
               
chr1:20104378-20104146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
107, 25
               

               
Conread position:
               
11-271
               

               
Cow position:
               
chr1:64572627-64572361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
108, 28
               

               
Conread position:
               
11-272
               

               
Cow position:
               
chr1:97954356-97954611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
108, 28
               

               
Conread position:
               
11-311
               

               
Cow position:
               
chr1:41056790-41056495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 28
               

               
Conread position:
               
11-318
               

               
Cow position:
               
chr1:82936485-82936777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
108, 28
               

               
Conread position:
               
12-322
               

               
Cow position:
               
chr1:53398086-53397788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 27
               

               
Conread position:
               
13-318
               

               
Cow position:
               
chr1:3720334-3720622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
107, 20
               

               
Conread position:
               
16-272
               

               
Cow position:
               
chr1:86682449-86682716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
16-322
               

               
Cow position:
               
chr1:19481973-19482272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 27
               

               
Conread position:
               
17-322
               

               
Cow position:
               
chr1:45288765-45289073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 22
               

               
Conread position:
               
18-221
               

               
Cow position:
               
chr1:19226952-19227157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
101, 24
               

               
Conread position:
               
18-231
               

               
Cow position:
               
chr1:23998831-23999033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
100, 21
               

               
Conread position:
               
18-293
               

               
Cow position:
               
chr1:12978787-12978506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 21
               

               
Conread position:
               
18-322
               

               
Cow position:
               
chr1:196900-197207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 21
               

               
Conread position:
               
18-322
               

               
Cow position:
               
chr1:6077996-6077695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 24
               

               
Conread position:
               
18-322
               

               
Cow position:
               
chr1:39426900-39427181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
100, 21
               

               
Conread position:
               
18-322
               

               
Cow position:
               
chr1:62291596-62291885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 21
               

               
Conread position:
               
18-322
               

               
Cow position:
               
chr1:81355598-81355903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
86, 21
               

               
Conread position:
               
19-317
               

               
Cow position:
               
chr1:81563849-81563538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 20
               

               
Conread position:
               
19-322
               

               
Cow position:
               
chr1:20205131-20204827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 25
               

               
Conread position:
               
22-292
               

               
Cow position:
               
chr1:78097028-78096762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
97, 17
               

               
Conread position:
               
22-322
               

               
Cow position:
               
chr1:62036903-62036601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 20
               

               
Conread position:
               
26-322
               

               
Cow position:
               
chr1:34686277-34685995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
28-322
               

               
Cow position:
               
chr1:44507068-44506768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
89, 14
               

               
Conread position:
               
31-319
               

               
Cow position:
               
chr1:31934599-31934317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
87, 8
               

               
Conread position:
               
31-319
               

               
Cow position:
               
chr1:64804010-64804304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
86, 8
               

               
Conread position:
               
31-322
               

               
Cow position:
               
chr1:95215098-95215385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 11
               

               
Conread position:
               
32-253
               

               
Cow position:
               
chr1:5023671-5023890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
87, 10
               

               
Conread position:
               
32-257
               

               
Cow position:
               
chr1:85549987-85550216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
87, 10
               

               
Conread position:
               
32-272
               

               
Cow position:
               
chr1:43703500-43703254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
85, 10
               

               
Conread position:
               
32-292
               

               
Cow position:
               
chr1:101632246-101632508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
85, 10
               

               
Conread position:
               
32-307
               

               
Cow position:
               
chr1:61012404-61012125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
87, 7
               

               
Conread position:
               
32-319
               

               
Cow position:
               
chr1:90868350-90868632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
85, 10
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr1:37309428-37309710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
85, 10
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr1:81868638-81868925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
87, 12
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr1:85774548-85774260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
85, 7
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr1:97611569-97611852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
48, 10
               

               
Conread position:
               
35-318
               

               
Cow position:
               
chr1:6788194-6788485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
38-268
               

               
Cow position:
               
chr1:65318661-65318426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
81, 162
               

               
Conread position:
               
38-280
               

               
Cow position:
               
chr1:85647694-85647943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
38-292
               

               
Cow position:
               
chr1:87212019-87211772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
81, 90
               

               
Conread position:
               
38-303
               

               
Cow position:
               
chr1:31607803-31608079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
79, 38
               

               
Conread position:
               
38-307
               

               
Cow position:
               
chr1:76037430-76037690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
79, 107
               

               
Conread position:
               
38-313
               

               
Cow position:
               
chr1:91039088-91039367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
78, 53
               

               
Conread position:
               
38-314
               

               
Cow position:
               
chr1:73545825-73546098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
108, 141
               

               
Conread position:
               
38-314
               

               
Cow position:
               
chr1:83072527-83072252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
81, 155
               

               
Conread position:
               
38-318
               

               
Cow position:
               
chr1:21955287-21955569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
95, 233
               

               
Conread position:
               
38-322
               

               
Cow position:
               
chr1:4374251-4374538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
67, 118
               

               
Conread position:
               
38-322
               

               
Cow position:
               
chr1:16767002-16767284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
102, 62
               

               
Conread position:
               
38-322
               

               
Cow position:
               
chr1:33720187-33719914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
191, 52
               

               
Conread position:
               
38-322
               

               
Cow position:
               
chr1:48581215-48580932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
79, 213
               

               
Conread position:
               
38-322
               

               
Cow position:
               
chr1:83582847-83583137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
61, 55
               

               
Conread position:
               
39-312
               

               
Cow position:
               
chr1:92369823-92369539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
40-263
               

               
Cow position:
               
chr1:8128883-8129111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
13, 171
               

               
Conread position:
               
40-317
               

               
Cow position:
               
chr1:6941552-6941271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
53, 195
               

               
Conread position:
               
40-317
               

               
Cow position:
               
chr1:6958965-6958684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
53, 195
               

               
Conread position:
               
40-318
               

               
Cow position:
               
chr1:92963479-92963203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
79, 103
               

               
Conread position:
               
43-287
               

               
Cow position:
               
chr1:75142078-75141834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
74, 131
               

               
Conread position:
               
43-289
               

               
Cow position:
               
chr1:22525959-22525709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
36, 31
               

               
Conread position:
               
43-295
               

               
Cow position:
               
chr1:77880653-77880903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 77
               

               
Conread position:
               
43-318
               

               
Cow position:
               
chr1:7186869-7186592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
74, 100
               

               
Conread position:
               
43-322
               

               
Cow position:
               
chr1:56477673-56477395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
74, 189
               

               
Conread position:
               
43-322
               

               
Cow position:
               
chr1:61176259-61175984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
69, 96
               

               
Conread position:
               
43-322
               

               
Cow position:
               
chr1:68845409-68845685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
56, 107
               

               
Conread position:
               
43-322
               

               
Cow position:
               
chr1:74955940-74956223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
57, 104
               

               
Conread position:
               
45-199
               

               
Cow position:
               
chr1:61560644-61560807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
45-236
               

               
Cow position:
               
chr1:92434079-92433883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
63, 56
               

               
Conread position:
               
45-311
               

               
Cow position:
               
chr1:58754718-58754973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
73, 31
               

               
Conread position:
               
46-318
               

               
Cow position:
               
chr1:89498031-89497770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
95, 26
               

               
Conread position:
               
48-262
               

               
Cow position:
               
chr1:87440543-87440325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
71, 11
               

               
Conread position:
               
48-322
               

               
Cow position:
               
chr1:80900196-80899908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
49-279
               

               
Cow position:
               
chr1:77683427-77683197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
68, 106
               

               
Conread position:
               
49-311
               

               
Cow position:
               
chr1:42398116-42398385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
68, 235
               

               
Conread position:
               
49-322
               

               
Cow position:
               
chr1:36998260-36997993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
96, 105
               

               
Conread position:
               
50-260
               

               
Cow position:
               
chr1:91369935-91370148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
69, 61
               

               
Conread position:
               
52-274
               

               
Cow position:
               
chr1:33409553-33409783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
52-319
               

               
Cow position:
               
chr1:91816699-91816970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
65, 161
               

               
Conread position:
               
52-322
               

               
Cow position:
               
chr1:26178739-26179014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
65, 152
               

               
Conread position:
               
53-319
               

               
Cow position:
               
chr1:63390696-63390970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
59, 68
               
Show alignments to all cow chromosomes.