Cow genome map
| Conread name: | Bra1-olf_071_B12 |
| Conread position: | 1-198 |
| Cow position: | chr12:19261273-19261074 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 102, 38 |
| Conread position: | 1-220 |
| Cow position: | chr12:9766799-9767020 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 92, 38 |
| Conread position: | 1-220 |
| Cow position: | chr12:24116285-24116510 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 131, 38 |
| Conread position: | 1-227 |
| Cow position: | chr12:17269880-17269646 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 118, 38 |
| Conread position: | 1-252 |
| Cow position: | chr12:15122404-15122142 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 97, 38 |
| Conread position: | 1-265 |
| Cow position: | chr12:11587852-11587576 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 108, 41 |
| Conread position: | 1-283 |
| Cow position: | chr12:30194779-30194500 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 121, 41 |
| Conread position: | 1-287 |
| Cow position: | chr12:36544564-36544863 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 32 |
| Conread position: | 1-307 |
| Cow position: | chr12:9143465-9143164 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 38 |
| Conread position: | 1-312 |
| Cow position: | chr12:27037372-27037683 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 38 |
| Conread position: | 1-313 |
| Cow position: | chr12:42181051-42181376 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 116, 38 |
| Conread position: | 1-317 |
| Cow position: | chr12:29779836-29780141 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 114, 41 |
| Conread position: | 1-318 |
| Cow position: | chr12:15089593-15089254 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 38 |
| Conread position: | 1-319 |
| Cow position: | chr12:18123747-18123445 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 38 |
| Conread position: | 1-322 |
| Cow position: | chr12:5635375-5635692 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 41 |
| Conread position: | 1-323 |
| Cow position: | chr12:9229422-9229727 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 121, 41 |
| Conread position: | 1-323 |
| Cow position: | chr12:30605088-30605401 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 38 |
| Conread position: | 2-141 |
| Cow position: | chr12:15260839-15260701 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 117, 30 |
| Conread position: | 2-264 |
| Cow position: | chr12:28582432-28582692 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 15, 30 |
| Conread position: | 2-294 |
| Cow position: | chr12:25917200-25917483 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 117, 32 |
| Conread position: | 2-310 |
| Cow position: | chr12:24663191-24662883 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 37 |
| Conread position: | 3-212 |
| Cow position: | chr12:19274323-19274525 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 114, 36 |
| Conread position: | 3-232 |
| Cow position: | chr12:24032572-24032343 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 116, 36 |
| Conread position: | 3-235 |
| Cow position: | chr12:37169870-37170104 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 36 |
| Conread position: | 3-260 |
| Cow position: | chr12:12637110-12637374 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 114, 25 |
| Conread position: | 3-265 |
| Cow position: | chr12:38774167-38774431 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 112, 39 |
| Conread position: | 3-277 |
| Cow position: | chr12:17879226-17879505 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 116, 36 |
| Conread position: | 3-319 |
| Cow position: | chr12:30661874-30662190 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 3-322 |
| Cow position: | chr12:6720405-6720075 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 37 |
| Conread position: | 3-322 |
| Cow position: | chr12:42967072-42966756 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 4-168 |
| Cow position: | chr12:33948979-33948818 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 95, 35 |
| Conread position: | 4-255 |
| Cow position: | chr12:19507712-19507451 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 199 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 95, 35 |
| Conread position: | 4-293 |
| Cow position: | chr12:33851432-33851140 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 102, 35 |
| Conread position: | 4-298 |
| Cow position: | chr12:30210558-30210258 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 38 |
| Conread position: | 4-300 |
| Cow position: | chr12:25444991-25444701 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 4-307 |
| Cow position: | chr12:41084131-41083836 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 35 |
| Conread position: | 4-314 |
| Cow position: | chr12:11056952-11056640 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 4-314 |
| Cow position: | chr12:17001336-17001022 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 4-319 |
| Cow position: | chr12:39465654-39465337 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 4-322 |
| Cow position: | chr12:15429521-15429844 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 35 |
| Conread position: | 4-322 |
| Cow position: | chr12:30590842-30590532 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 94, 38 |
| Conread position: | 4-323 |
| Cow position: | chr12:37770946-37770630 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 5-318 |
| Cow position: | chr12:45814188-45814505 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 34 |
| Conread position: | 5-322 |
| Cow position: | chr12:5906130-5905813 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 34 |
| Conread position: | 6-272 |
| Cow position: | chr12:7299383-7299666 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 12, 37 |
| Conread position: | 7-229 |
| Cow position: | chr12:7902726-7902955 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 33 |
| Conread position: | 11-284 |
| Cow position: | chr12:44622416-44622144 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 108, 28 |
| Conread position: | 11-322 |
| Cow position: | chr12:30745784-30745469 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 28 |
| Conread position: | 18-220 |
| Cow position: | chr12:16670327-16670119 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 81, 14 |
| Conread position: | 18-284 |
| Cow position: | chr12:18518734-18518456 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 21 |
| Conread position: | 19-326 |
| Cow position: | chr12:1889518-1889829 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 74, 23 |
| Conread position: | 21-232 |
| Cow position: | chr12:22285065-22285277 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 81, 17 |
| Conread position: | 22-306 |
| Cow position: | chr12:12578978-12579253 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 95, 10 |
| Conread position: | 24-319 |
| Cow position: | chr12:30170724-30170426 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 15 |
| Conread position: | 32-285 |
| Cow position: | chr12:25452400-25452655 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 85, 10 |
| Conread position: | 32-307 |
| Cow position: | chr12:4008237-4008510 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 35-319 |
| Cow position: | chr12:17717109-17716842 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 120, 7 |
| Conread position: | 37-280 |
| Cow position: | chr12:34673297-34673546 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 132 |
| Conread position: | 37-308 |
| Cow position: | chr12:3906516-3906238 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 203 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 56, 124 |
| Conread position: | 38-213 |
| Cow position: | chr12:3092538-3092715 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 81, 116 |
| Conread position: | 38-290 |
| Cow position: | chr12:13643274-13643020 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 63, 151 |
| Conread position: | 38-291 |
| Cow position: | chr12:45680319-45680054 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 77, 121 |
| Conread position: | 38-307 |
| Cow position: | chr12:45820324-45820592 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 163 |
| Conread position: | 38-313 |
| Cow position: | chr12:17080302-17080023 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 61, 54 |
| Conread position: | 38-319 |
| Cow position: | chr12:32169582-32169295 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 55 |
| Conread position: | 38-322 |
| Cow position: | chr12:16605631-16605890 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 59, 51 |
| Conread position: | 39-314 |
| Cow position: | chr12:13156708-13156437 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 270, 9 |
| Conread position: | 43-270 |
| Cow position: | chr12:18550918-18550686 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 57, 49 |
| Conread position: | 43-305 |
| Cow position: | chr12:42160522-42160780 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 184, 58 |
| Conread position: | 43-307 |
| Cow position: | chr12:18963891-18964158 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 86, 242 |
| Conread position: | 43-307 |
| Cow position: | chr12:19691197-19691465 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 36 |
| Conread position: | 43-317 |
| Cow position: | chr12:17774831-17774566 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 76, 138 |
| Conread position: | 43-322 |
| Cow position: | chr12:19508522-19508816 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 43-322 |
| Cow position: | chr12:35368679-35368399 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 75, 118 |
| Conread position: | 43-322 |
| Cow position: | chr12:37993695-37993970 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 74, 100 |
| Conread position: | 45-242 |
| Cow position: | chr12:18420504-18420302 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 56, 5 |
| Conread position: | 48-336 |
| Cow position: | chr12:730904-731194 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 71, 226 |
| Conread position: | 52-318 |
| Cow position: | chr12:18040580-18040831 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 65, 90 |
| Conread position: | 53-230 |
| Cow position: | chr12:6102801-6102983 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 59-322 |
| Cow position: | chr12:18420901-18421171 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 128 |
| Conread position: | 65-322 |
| Cow position: | chr12:39486439-39486185 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 126 |
Show alignments to all cow chromosomes.