Cow genome map

Conread name: Bra1-olf_071_B12

Conread position: 1-177
Cow position: chr20:15530019-15529846 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 116, 38

Conread position: 1-200
Cow position: chr20:4786859-4787058 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 118, 38

Conread position: 1-217
Cow position: chr20:38514937-38514720 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 159
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 98, 35

Conread position: 1-226
Cow position: chr20:38090072-38089841 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 162
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 26, 36

Conread position: 1-252
Cow position: chr20:7738072-7738323 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 116, 38

Conread position: 1-274
Cow position: chr20:19459509-19459775 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 200
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 118, 23

Conread position: 1-314
Cow position: chr20:13829422-13829109 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 216
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 14, 41

Conread position: 1-319
Cow position: chr20:3255196-3254888 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 39

Conread position: 1-322
Cow position: chr20:381973-382290 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 234
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 245, 38

Conread position: 1-322
Cow position: chr20:7426038-7426352 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 38

Conread position: 1-322
Cow position: chr20:9412647-9412329 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 38

Conread position: 1-322
Cow position: chr20:10208967-10208639 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 38

Conread position: 1-322
Cow position: chr20:14879948-14879624 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 232
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 118, 38

Conread position: 1-322
Cow position: chr20:25009473-25009806 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 38

Conread position: 1-322
Cow position: chr20:32847504-32847190 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 41

Conread position: 1-322
Cow position: chr20:33532462-33532148 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 220
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 118, 41

Conread position: 1-322
Cow position: chr20:39398640-39398325 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 38

Conread position: 1-323
Cow position: chr20:36779569-36779895 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 217
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 14, 42

Conread position: 2-308
Cow position: chr20:20099442-20099748 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 213
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 91, 40

Conread position: 2-322
Cow position: chr20:12581796-12582110 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 37

Conread position: 3-303
Cow position: chr20:2298633-2298926 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 221
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 90, 35

Conread position: 3-307
Cow position: chr20:30710478-30710798 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 226
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 104, 39

Conread position: 3-319
Cow position: chr20:28982857-28982537 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 36

Conread position: 3-322
Cow position: chr20:23870660-23870979 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 218
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 35, 21

Conread position: 3-322
Cow position: chr20:31746479-31746788 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 216
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 36, 0

Conread position: 4-154
Cow position: chr20:24097159-24097006 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 10, 37

Conread position: 4-173
Cow position: chr20:5702880-5702704 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 115, 38

Conread position: 4-218
Cow position: chr20:22030477-22030258 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 153
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 36

Conread position: 4-318
Cow position: chr20:36207970-36207643 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 35

Conread position: 4-322
Cow position: chr20:580764-581084 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 226
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 115, 38

Conread position: 4-322
Cow position: chr20:10818084-10818388 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 212
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 115, 35

Conread position: 4-322
Cow position: chr20:28605365-28605042 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 32

Conread position: 5-182
Cow position: chr20:21815716-21815534 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 114, 34

Conread position: 5-274
Cow position: chr20:2819701-2819424 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 199
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 11, 37

Conread position: 5-307
Cow position: chr20:6096340-6096639 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 216
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 113, 37

Conread position: 5-312
Cow position: chr20:12420464-12420774 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 34

Conread position: 5-314
Cow position: chr20:33363672-33363365 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 13

Conread position: 5-322
Cow position: chr20:22065221-22064907 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 34

Conread position: 6-319
Cow position: chr20:13752381-13752080 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 233
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 15, 35

Conread position: 7-322
Cow position: chr20:8556113-8556437 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 38

Conread position: 7-322
Cow position: chr20:14807043-14806723 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 35

Conread position: 7-322
Cow position: chr20:23064680-23064992 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 221
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 7, 37

Conread position: 7-322
Cow position: chr20:40177401-40177087 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 227
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 11, 35

Conread position: 10-307
Cow position: chr20:23792754-23792459 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 29

Conread position: 10-314
Cow position: chr20:42309818-42310115 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 210
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 85, 15

Conread position: 11-230
Cow position: chr20:38670899-38670684 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 155
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 108, 28

Conread position: 11-252
Cow position: chr20:35710325-35710075 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 174
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 39, 178

Conread position: 11-274
Cow position: chr20:32463375-32463640 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 28

Conread position: 11-287
Cow position: chr20:19363214-19363496 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 24

Conread position: 11-314
Cow position: chr20:26996678-26996375 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 28

Conread position: 11-322
Cow position: chr20:22235461-22235152 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 28

Conread position: 13-322
Cow position: chr20:17846106-17845796 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 210
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 104, 29

Conread position: 16-286
Cow position: chr20:28955557-28955830 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 187
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 99, 26

Conread position: 16-322
Cow position: chr20:20203361-20203053 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 6

Conread position: 18-248
Cow position: chr20:22265110-22265338 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 172
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 81, 30

Conread position: 18-255
Cow position: chr20:23286193-23286423 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 166
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 76, 31

Conread position: 18-267
Cow position: chr20:39266816-39267071 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 194
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 99, 21

Conread position: 18-285
Cow position: chr20:25161983-25162258 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 24

Conread position: 18-305
Cow position: chr20:7438709-7438997 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 21

Conread position: 18-307
Cow position: chr20:28441469-28441178 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 21

Conread position: 18-322
Cow position: chr20:31740080-31740381 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 20

Conread position: 22-322
Cow position: chr20:8578387-8578081 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 17

Conread position: 27-322
Cow position: chr20:11542155-11542446 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 12

Conread position: 31-286
Cow position: chr20:18622703-18622449 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 169
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 90, 8

Conread position: 31-314
Cow position: chr20:4621225-4621494 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 198
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 117, 11

Conread position: 31-322
Cow position: chr20:6424096-6423801 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 211
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 88, 11

Conread position: 31-322
Cow position: chr20:22313030-22313320 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 215
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 88, 142

Conread position: 32-222
Cow position: chr20:7624120-7624313 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 87, 7

Conread position: 32-287
Cow position: chr20:20984120-20983870 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 179
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 86, 10

Conread position: 32-295
Cow position: chr20:22484987-22484724 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 194
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 111, 10

Conread position: 32-322
Cow position: chr20:21929033-21928741 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 212
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 86, 10

Conread position: 32-322
Cow position: chr20:38551496-38551211 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 205
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 87, 10

Conread position: 35-322
Cow position: chr20:34777305-34777023 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 202
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 82, 7

Conread position: 36-171
Cow position: chr20:33623428-33623562 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 83, 13

Conread position: 37-283
Cow position: chr20:17470847-17470606 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 167
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 194, 64

Conread position: 38-232
Cow position: chr20:21204476-21204283 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 81, 23

Conread position: 38-299
Cow position: chr20:39518130-39517863 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 55

Conread position: 38-318
Cow position: chr20:11482011-11482298 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 204
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 42, 36

Conread position: 38-334
Cow position: chr20:15568826-15569127 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 77, 120

Conread position: 38-345
Cow position: chr20:10200469-10200161 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 222
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 79, 164

Conread position: 40-322
Cow position: chr20:41028610-41028320 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 193
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 108, 53

Conread position: 43-180
Cow position: chr20:26723560-26723699 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 76, 0

Conread position: 43-274
Cow position: chr20:9433705-9433469 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 171
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 74, 174

Conread position: 43-314
Cow position: chr20:39325509-39325230 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 198
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 61, 154

Conread position: 43-322
Cow position: chr20:4206090-4205800 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 0

Conread position: 43-323
Cow position: chr20:35797727-35797441 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 206
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 75, 36

Conread position: 45-306
Cow position: chr20:4334414-4334667 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 187
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 72, 118

Conread position: 45-319
Cow position: chr20:15548780-15549057 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 174

Conread position: 46-322
Cow position: chr20:27407771-27408041 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 77

Conread position: 48-319
Cow position: chr20:29845164-29844895 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 197
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 69, 149

Conread position: 49-314
Cow position: chr20:17251829-17251553 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 198
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 52, 106

Conread position: 49-318
Cow position: chr20:7806457-7806721 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 195
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 68, 94

Conread position: 50-299
Cow position: chr20:8702806-8703048 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 194
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 69, 51

Conread position: 52-254
Cow position: chr20:15118385-15118177 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 143
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 65, 0

Conread position: 52-321
Cow position: chr20:14012078-14011808 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 175
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 83, 0

Conread position: 58-319
Cow position: chr20:23505931-23505668 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 200
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 61, 148

Show alignments to all cow chromosomes.