Cow genome map

Conread name: Bra1-olf_071_B12

Conread position: 1-141
Cow position: chr23:5785963-5785823 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 104
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 118, 38

Conread position: 1-142
Cow position: chr23:22238703-22238844 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 118, 38

Conread position: 1-182
Cow position: chr23:348829-349018 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 118, 38

Conread position: 1-189
Cow position: chr23:5881399-5881593 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 136
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 118, 38

Conread position: 1-200
Cow position: chr23:2358999-2358806 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 140
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 116, 38

Conread position: 1-201
Cow position: chr23:17486705-17486913 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 118, 38

Conread position: 1-224
Cow position: chr23:1222118-1222349 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 118, 38

Conread position: 1-228
Cow position: chr23:1876830-1876597 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 99, 38

Conread position: 1-228
Cow position: chr23:11212626-11212392 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 160
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 118, 38

Conread position: 1-266
Cow position: chr23:21502512-21502789 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 208
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 92, 38

Conread position: 1-270
Cow position: chr23:6592588-6592859 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 193
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 16, 42

Conread position: 1-272
Cow position: chr23:18286311-18286039 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 202
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 118, 38

Conread position: 1-272
Cow position: chr23:39778520-39778248 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 197
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 118, 38

Conread position: 1-298
Cow position: chr23:39049320-39049609 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 201
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 269, 45

Conread position: 1-309
Cow position: chr23:2487873-2488176 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 38

Conread position: 1-314
Cow position: chr23:2282064-2282374 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 21

Conread position: 1-317
Cow position: chr23:8698539-8698244 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 38

Conread position: 1-319
Cow position: chr23:6244478-6244788 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 38

Conread position: 1-319
Cow position: chr23:26986153-26986475 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 38

Conread position: 1-322
Cow position: chr23:534346-534025 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 38

Conread position: 1-322
Cow position: chr23:9268698-9268385 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 38

Conread position: 1-322
Cow position: chr23:11314915-11315221 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 220
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 118, 130

Conread position: 1-322
Cow position: chr23:13599459-13599137 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 38

Conread position: 1-322
Cow position: chr23:16699923-16700243 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 223
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 116, 41

Conread position: 1-322
Cow position: chr23:18901936-18902255 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 38

Conread position: 1-322
Cow position: chr23:21452611-21452937 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 38

Conread position: 1-322
Cow position: chr23:29458980-29459293 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 38

Conread position: 1-336
Cow position: chr23:4646629-4646293 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 236
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 116, 41

Conread position: 2-227
Cow position: chr23:39276015-39275777 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 165
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 182

Conread position: 2-302
Cow position: chr23:3282004-3282299 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 224
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 117, 37

Conread position: 2-314
Cow position: chr23:5451436-5451125 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 37

Conread position: 2-314
Cow position: chr23:6172560-6172858 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 215
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 37, 0

Conread position: 2-322
Cow position: chr23:27544945-27544628 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 229
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 116, 40

Conread position: 2-322
Cow position: chr23:29626540-29626210 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 235
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 27, 280

Conread position: 3-182
Cow position: chr23:22586997-22586821 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 137
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 15, 37

Conread position: 3-215
Cow position: chr23:24966346-24966559 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 160
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 115, 36

Conread position: 3-242
Cow position: chr23:16076047-16076287 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 180
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 11, 37

Conread position: 3-249
Cow position: chr23:30951073-30950825 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 176
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 14, 192

Conread position: 3-250
Cow position: chr23:24685360-24685113 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 116, 19

Conread position: 3-322
Cow position: chr23:187297-186967 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 223
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 29, 38

Conread position: 3-322
Cow position: chr23:1923719-1924040 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 40

Conread position: 3-322
Cow position: chr23:2501737-2502053 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 30

Conread position: 3-322
Cow position: chr23:2799698-2799362 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 243
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 18, 37

Conread position: 3-322
Cow position: chr23:11045603-11045280 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 36

Conread position: 3-334
Cow position: chr23:1585282-1585603 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 236
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 95, 36

Conread position: 4-182
Cow position: chr23:16961413-16961228 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 115, 35

Conread position: 4-182
Cow position: chr23:35368931-35369113 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 113, 24

Conread position: 4-186
Cow position: chr23:40637375-40637184 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 19, 37

Conread position: 4-193
Cow position: chr23:20539502-20539304 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 25, 36

Conread position: 4-259
Cow position: chr23:17404954-17404694 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 35

Conread position: 4-322
Cow position: chr23:5707109-5706796 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 35

Conread position: 5-181
Cow position: chr23:1981547-1981721 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 114, 34

Conread position: 5-200
Cow position: chr23:3293809-3293606 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 145
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 114, 20

Conread position: 5-257
Cow position: chr23:12363503-12363761 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 34

Conread position: 5-314
Cow position: chr23:24509808-24509505 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 11

Conread position: 6-182
Cow position: chr23:35965263-35965075 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 138
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 10, 41

Conread position: 6-314
Cow position: chr23:3967444-3967746 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 227
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 8, 32

Conread position: 6-318
Cow position: chr23:16582794-16583109 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 218
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 25, 35

Conread position: 7-312
Cow position: chr23:1290413-1290099 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 189

Conread position: 7-319
Cow position: chr23:8293617-8293300 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 216
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 33, 239

Conread position: 7-322
Cow position: chr23:20744480-20744793 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 32

Conread position: 9-148
Cow position: chr23:17231261-17231121 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 9, 32

Conread position: 11-197
Cow position: chr23:3830092-3830282 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 108, 14

Conread position: 11-238
Cow position: chr23:1438401-1438173 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 173
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 108, 28

Conread position: 11-322
Cow position: chr23:16881054-16881361 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 28

Conread position: 11-322
Cow position: chr23:31493973-31493674 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 223
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 108, 28

Conread position: 18-182
Cow position: chr23:4470398-4470569 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 101, 21

Conread position: 18-315
Cow position: chr23:5426535-5426230 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 21

Conread position: 25-322
Cow position: chr23:1883490-1883189 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 14

Conread position: 32-198
Cow position: chr23:19872595-19872758 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 87, 7

Conread position: 32-279
Cow position: chr23:7361195-7360953 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 7

Conread position: 32-312
Cow position: chr23:19370987-19371265 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 200
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 85, 10

Conread position: 32-319
Cow position: chr23:18402202-18402487 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 200
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 85, 10

Conread position: 39-251
Cow position: chr23:1634763-1634548 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 158
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 78, 49

Conread position: 40-322
Cow position: chr23:7845374-7845085 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 43-248
Cow position: chr23:35938423-35938208 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 166
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 76, 170

Conread position: 43-310
Cow position: chr23:11845354-11845095 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 192
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 76, 174

Conread position: 43-319
Cow position: chr23:29786268-29786554 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 197
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 66, 253

Conread position: 43-322
Cow position: chr23:6994905-6995178 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 204
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 48, 66

Conread position: 43-322
Cow position: chr23:20434986-20435255 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 194
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 39, 32

Conread position: 43-322
Cow position: chr23:38455101-38455389 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 207
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 74, 272

Conread position: 43-329
Cow position: chr23:16563916-16563632 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 247

Conread position: 44-299
Cow position: chr23:5516046-5515786 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 188
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 73, 51

Conread position: 44-322
Cow position: chr23:30662562-30662832 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 195
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 95, 77

Conread position: 45-283
Cow position: chr23:1767904-1767661 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 175
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 72, 201

Conread position: 46-318
Cow position: chr23:6367685-6367405 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 185

Conread position: 48-272
Cow position: chr23:4329602-4329839 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 168
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 69, 0

Conread position: 49-319
Cow position: chr23:39775798-39775529 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 201
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 66, 141

Conread position: 49-322
Cow position: chr23:10553937-10554216 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 198
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 70, 0

Conread position: 50-257
Cow position: chr23:3408840-3409047 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 67, 134

Conread position: 52-318
Cow position: chr23:36018219-36017942 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 192
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 63, 0

Conread position: 52-319
Cow position: chr23:29521541-29521268 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 196
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 55, 67

Conread position: 85-322
Cow position: chr23:4504866-4504623 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 185
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 34, 125

Show alignments to all cow chromosomes.