Cow genome map

Conread name: Bra1-olf_071_B12

Conread position: 1-141
Cow position: chr25:9107407-9107550 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 15, 41

Conread position: 1-150
Cow position: chr25:18810457-18810309 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 116, 38

Conread position: 1-177
Cow position: chr25:11276666-11276485 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 129
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 34, 27

Conread position: 1-180
Cow position: chr25:26306090-26306276 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 118, 38

Conread position: 1-196
Cow position: chr25:13621245-13621445 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 116, 38

Conread position: 1-235
Cow position: chr25:9843290-9843052 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 177
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 118, 38

Conread position: 1-257
Cow position: chr25:7673415-7673133 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 197
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 92, 38

Conread position: 1-272
Cow position: chr25:18564602-18564327 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 190
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 29, 20

Conread position: 1-274
Cow position: chr25:41150851-41151124 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 198
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 29, 39

Conread position: 1-288
Cow position: chr25:32277493-32277778 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 212
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 112, 41

Conread position: 1-305
Cow position: chr25:7750566-7750259 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 38

Conread position: 1-311
Cow position: chr25:37637554-37637852 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 206
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 123, 38

Conread position: 1-314
Cow position: chr25:2624909-2624605 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 1-314
Cow position: chr25:22531395-22531087 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 38

Conread position: 1-318
Cow position: chr25:36762219-36761902 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 227
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 116, 38

Conread position: 1-322
Cow position: chr25:6961039-6961358 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 38

Conread position: 1-322
Cow position: chr25:7216938-7216620 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 38

Conread position: 1-322
Cow position: chr25:10504227-10504543 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 214
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 88, 38

Conread position: 1-322
Cow position: chr25:11585632-11585310 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 35

Conread position: 1-322
Cow position: chr25:15273787-15273481 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 238
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 118, 38

Conread position: 1-322
Cow position: chr25:27531157-27531475 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 239
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 13, 22

Conread position: 1-322
Cow position: chr25:28187831-28188157 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 230
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 92, 41

Conread position: 1-322
Cow position: chr25:33457846-33457498 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 243
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 118, 38

Conread position: 1-325
Cow position: chr25:22315319-22314990 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 235
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 118, 38

Conread position: 2-151
Cow position: chr25:13223013-13222864 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 117, 37

Conread position: 2-220
Cow position: chr25:13567081-13566852 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 158
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 116, 37

Conread position: 2-229
Cow position: chr25:11432830-11433072 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 179
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 21, 43

Conread position: 2-305
Cow position: chr25:12116886-12117182 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 115, 37

Conread position: 2-318
Cow position: chr25:7581312-7581632 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 225
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 19, 42

Conread position: 2-322
Cow position: chr25:30279095-30279415 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 37

Conread position: 3-243
Cow position: chr25:14157737-14157489 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 188
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 116, 39

Conread position: 3-267
Cow position: chr25:5474116-5474383 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 180
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 28, 38

Conread position: 3-314
Cow position: chr25:7306405-7306098 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 220
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 18, 34

Conread position: 3-314
Cow position: chr25:11661705-11662020 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 37

Conread position: 3-314
Cow position: chr25:26238974-26238671 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 36

Conread position: 3-319
Cow position: chr25:21245492-21245812 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 227
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 116, 39

Conread position: 3-323
Cow position: chr25:30319341-30319658 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 221
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 44, 36

Conread position: 4-195
Cow position: chr25:13768080-13767884 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 140
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 115, 14

Conread position: 4-204
Cow position: chr25:4948073-4947869 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 153
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 114, 35

Conread position: 4-273
Cow position: chr25:26679337-26679065 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 35

Conread position: 4-283
Cow position: chr25:23244891-23245182 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 209
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 113, 35

Conread position: 4-314
Cow position: chr25:9989999-9990290 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 35

Conread position: 4-317
Cow position: chr25:13272680-13272366 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 35

Conread position: 4-318
Cow position: chr25:15714984-15714677 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 35

Conread position: 4-322
Cow position: chr25:7008024-7007708 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 229
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 17, 36

Conread position: 4-322
Cow position: chr25:15254237-15254539 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 35

Conread position: 5-245
Cow position: chr25:12509901-12510144 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 175
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 114, 30

Conread position: 5-245
Cow position: chr25:19363949-19364193 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 184
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 114, 34

Conread position: 5-258
Cow position: chr25:21668359-21668098 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 192
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 112, 34

Conread position: 5-264
Cow position: chr25:8961880-8961620 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 179
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 117, 37

Conread position: 6-229
Cow position: chr25:17119853-17119626 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 154
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 26, 35

Conread position: 6-274
Cow position: chr25:788370-788101 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 194
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 32, 17

Conread position: 6-299
Cow position: chr25:18721011-18721295 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 217
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 109, 33

Conread position: 6-314
Cow position: chr25:21191598-21191287 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 33

Conread position: 6-318
Cow position: chr25:36036670-36036984 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 33

Conread position: 6-322
Cow position: chr25:23829019-23829326 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 233
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 9, 32

Conread position: 7-243
Cow position: chr25:11051637-11051397 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 181
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 111, 32

Conread position: 7-319
Cow position: chr25:20023275-20023598 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 35

Conread position: 11-317
Cow position: chr25:26089709-26090017 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 28

Conread position: 11-322
Cow position: chr25:6682958-6683269 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 28

Conread position: 11-322
Cow position: chr25:11436703-11437010 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 232
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 108, 28

Conread position: 13-322
Cow position: chr25:33550613-33550297 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 26

Conread position: 18-177
Cow position: chr25:14809370-14809213 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 101, 21

Conread position: 18-313
Cow position: chr25:14720841-14720553 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 21

Conread position: 18-322
Cow position: chr25:4547621-4547928 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 215
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 101, 21

Conread position: 22-275
Cow position: chr25:21893431-21893173 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 187
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 92, 20

Conread position: 22-322
Cow position: chr25:17975285-17975575 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 216
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 97, 17

Conread position: 31-245
Cow position: chr25:22756693-22756474 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 149
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 86, 8

Conread position: 32-274
Cow position: chr25:20008216-20007973 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 181
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 61, 10

Conread position: 32-318
Cow position: chr25:16319057-16319336 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 7

Conread position: 32-319
Cow position: chr25:16714186-16714479 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 212
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 85, 16

Conread position: 37-246
Cow position: chr25:33686606-33686815 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 141
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 117, 188

Conread position: 38-280
Cow position: chr25:26136745-26136994 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 172
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 79, 0

Conread position: 38-281
Cow position: chr25:20523156-20523399 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 173
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 81, 150

Conread position: 38-299
Cow position: chr25:4681308-4681048 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 46

Conread position: 38-314
Cow position: chr25:3145922-3145640 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 205
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 66, 81

Conread position: 38-319
Cow position: chr25:6227113-6226836 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 206
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 81, 92

Conread position: 41-322
Cow position: chr25:12817440-12817164 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 199
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 80, 44

Conread position: 43-304
Cow position: chr25:5921017-5920744 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 188
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 69, 76

Conread position: 43-306
Cow position: chr25:22750934-22751205 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 183
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 75, 226

Conread position: 43-308
Cow position: chr25:32453346-32453592 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 200
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 36, 0

Conread position: 43-312
Cow position: chr25:33959179-33959462 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 198
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 66, 0

Conread position: 43-314
Cow position: chr25:16064965-16064696 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 191
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 74, 224

Conread position: 43-314
Cow position: chr25:27801351-27801090 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 187
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 248, 52

Conread position: 43-322
Cow position: chr25:14196936-14196648 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 203
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 55, 119

Conread position: 43-322
Cow position: chr25:19129928-19129645 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 244

Conread position: 43-322
Cow position: chr25:20348942-20348650 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 205
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 63, 135

Conread position: 43-322
Cow position: chr25:26701100-26700830 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 201
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 73, 36

Conread position: 46-250
Cow position: chr25:4245747-4245550 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 148
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 71, 103

Conread position: 48-249
Cow position: chr25:24052034-24051824 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 164
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 71, 136

Conread position: 49-314
Cow position: chr25:35612246-35612497 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 188
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 70, 139

Conread position: 49-322
Cow position: chr25:38425428-38425157 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 188
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 69, 201

Conread position: 52-314
Cow position: chr25:10217985-10218250 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 191
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 65, 236

Conread position: 53-299
Cow position: chr25:37562761-37562522 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 176
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 61, 85

Conread position: 57-243
Cow position: chr25:7449859-7449675 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 146
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 60, 96

Show alignments to all cow chromosomes.