Cow genome map
| Conread name: | Bra1-olf_071_B12 |
| Conread position: | 1-177 |
| Cow position: | chr29:38978644-38978463 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 117, 38 |
| Conread position: | 1-185 |
| Cow position: | chr29:38979961-38980145 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 1-196 |
| Cow position: | chr29:20770458-20770258 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 118, 38 |
| Conread position: | 1-200 |
| Cow position: | chr29:21666201-21665998 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 117, 38 |
| Conread position: | 1-285 |
| Cow position: | chr29:5409027-5409321 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 1-292 |
| Cow position: | chr29:27589037-27588743 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 38 |
| Conread position: | 1-299 |
| Cow position: | chr29:41112767-41113045 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 118, 38 |
| Conread position: | 1-312 |
| Cow position: | chr29:32963651-32963357 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 118, 38 |
| Conread position: | 1-314 |
| Cow position: | chr29:22613541-22613228 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 231 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 118, 30 |
| Conread position: | 1-317 |
| Cow position: | chr29:8926347-8926661 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 236 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 118, 41 |
| Conread position: | 1-319 |
| Cow position: | chr29:40117685-40117364 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 38 |
| Conread position: | 1-322 |
| Cow position: | chr29:1557045-1556725 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 226 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 118, 38 |
| Conread position: | 1-322 |
| Cow position: | chr29:4480059-4480383 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 38 |
| Conread position: | 1-322 |
| Cow position: | chr29:4874766-4875110 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 38 |
| Conread position: | 1-322 |
| Cow position: | chr29:6844518-6844837 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 87, 41 |
| Conread position: | 1-322 |
| Cow position: | chr29:17110071-17109764 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 41 |
| Conread position: | 1-322 |
| Cow position: | chr29:40583901-40583590 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 20, 42 |
| Conread position: | 2-130 |
| Cow position: | chr29:39038156-39038285 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 117, 37 |
| Conread position: | 2-200 |
| Cow position: | chr29:32197810-32197618 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 116, 37 |
| Conread position: | 2-230 |
| Cow position: | chr29:13028554-13028319 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 2-284 |
| Cow position: | chr29:9912288-9911999 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 115, 30 |
| Conread position: | 2-323 |
| Cow position: | chr29:11053744-11054062 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 16, 40 |
| Conread position: | 3-275 |
| Cow position: | chr29:40959737-40960012 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 115, 39 |
| Conread position: | 3-318 |
| Cow position: | chr29:28195409-28195720 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 41 |
| Conread position: | 3-322 |
| Cow position: | chr29:25737299-25737623 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 39 |
| Conread position: | 3-322 |
| Cow position: | chr29:36530982-36530656 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 39 |
| Conread position: | 4-182 |
| Cow position: | chr29:742538-742713 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 114, 32 |
| Conread position: | 4-295 |
| Cow position: | chr29:10235025-10235310 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 217 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 85, 14 |
| Conread position: | 4-307 |
| Cow position: | chr29:38582079-38581775 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 161, 35 |
| Conread position: | 4-319 |
| Cow position: | chr29:5892956-5892642 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 35 |
| Conread position: | 4-319 |
| Cow position: | chr29:36210252-36209960 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 4-322 |
| Cow position: | chr29:109796-109502 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 113, 27 |
| Conread position: | 4-322 |
| Cow position: | chr29:20903179-20903495 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 35 |
| Conread position: | 5-240 |
| Cow position: | chr29:34358868-34359109 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 114, 37 |
| Conread position: | 5-248 |
| Cow position: | chr29:4003002-4002759 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 73, 34 |
| Conread position: | 5-318 |
| Cow position: | chr29:39567792-39567484 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 112, 37 |
| Conread position: | 5-319 |
| Cow position: | chr29:28196899-28197212 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 27 |
| Conread position: | 5-322 |
| Cow position: | chr29:7955879-7956191 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 26, 36 |
| Conread position: | 5-322 |
| Cow position: | chr29:15940524-15940845 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 74, 10 |
| Conread position: | 6-314 |
| Cow position: | chr29:17607527-17607217 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 15 |
| Conread position: | 6-322 |
| Cow position: | chr29:35501544-35501856 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 7-249 |
| Cow position: | chr29:27330000-27329754 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 112, 25 |
| Conread position: | 7-268 |
| Cow position: | chr29:39111204-39111472 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 112, 32 |
| Conread position: | 7-318 |
| Cow position: | chr29:40763586-40763888 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 44, 31 |
| Conread position: | 8-189 |
| Cow position: | chr29:18012665-18012476 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 111, 31 |
| Conread position: | 8-258 |
| Cow position: | chr29:35084113-35084370 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 23, 33 |
| Conread position: | 8-318 |
| Cow position: | chr29:5098659-5098965 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 220 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 19, 25 |
| Conread position: | 9-322 |
| Cow position: | chr29:12680262-12679947 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 33 |
| Conread position: | 11-316 |
| Cow position: | chr29:10818346-10818638 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 11-322 |
| Cow position: | chr29:26615613-26615932 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 68 |
| Conread position: | 14-322 |
| Cow position: | chr29:26778983-26778677 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 69, 25 |
| Conread position: | 18-287 |
| Cow position: | chr29:45005532-45005799 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 207 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 101, 21 |
| Conread position: | 18-309 |
| Cow position: | chr29:23243781-23244077 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 21 |
| Conread position: | 18-322 |
| Cow position: | chr29:28446159-28446467 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 227 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 113, 21 |
| Conread position: | 22-322 |
| Cow position: | chr29:17222506-17222201 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 95, 17 |
| Conread position: | 22-322 |
| Cow position: | chr29:22162156-22162458 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 17 |
| Conread position: | 31-306 |
| Cow position: | chr29:24292952-24292679 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 84, 8 |
| Conread position: | 32-235 |
| Cow position: | chr29:24578946-24578731 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 87, 7 |
| Conread position: | 32-317 |
| Cow position: | chr29:43009001-43009287 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 7 |
| Conread position: | 32-322 |
| Cow position: | chr29:11562696-11562407 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 7 |
| Conread position: | 33-287 |
| Cow position: | chr29:44682022-44682273 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 86, 6 |
| Conread position: | 38-314 |
| Cow position: | chr29:21443260-21443543 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 79, 254 |
| Conread position: | 38-322 |
| Cow position: | chr29:30441015-30440718 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 55, 86 |
| Conread position: | 39-322 |
| Cow position: | chr29:43328721-43328431 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 78, 239 |
| Conread position: | 41-276 |
| Cow position: | chr29:31674708-31674465 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 185 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 78, 147 |
| Conread position: | 41-319 |
| Cow position: | chr29:41530925-41530645 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 76, 192 |
| Conread position: | 41-322 |
| Cow position: | chr29:29975113-29974834 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 57 |
| Conread position: | 43-274 |
| Cow position: | chr29:17297209-17296968 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 43-308 |
| Cow position: | chr29:30188279-30188534 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 196 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 183, 46 |
| Conread position: | 43-318 |
| Cow position: | chr29:40166317-40166039 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 145 |
| Conread position: | 43-322 |
| Cow position: | chr29:13615576-13615851 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 66, 94 |
| Conread position: | 43-322 |
| Cow position: | chr29:14501666-14501383 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 69, 162 |
| Conread position: | 43-322 |
| Cow position: | chr29:21933048-21933320 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 69, 97 |
| Conread position: | 43-322 |
| Cow position: | chr29:24103468-24103756 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 47 |
| Conread position: | 44-266 |
| Cow position: | chr29:29314580-29314810 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 55, 49 |
| Conread position: | 44-322 |
| Cow position: | chr29:868847-868565 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 203 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 73, 220 |
| Conread position: | 44-322 |
| Cow position: | chr29:21196577-21196858 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 74, 166 |
| Conread position: | 44-322 |
| Cow position: | chr29:37599144-37599412 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 44-322 |
| Cow position: | chr29:40298948-40299220 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 73, 109 |
| Conread position: | 45-314 |
| Cow position: | chr29:39329532-39329796 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 74, 99 |
| Conread position: | 49-305 |
| Cow position: | chr29:44988723-44988972 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 66, 77 |
| Conread position: | 50-319 |
| Cow position: | chr29:2071505-2071773 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 43, 199 |
| Conread position: | 52-303 |
| Cow position: | chr29:27652564-27652818 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 69 |
| Conread position: | 52-314 |
| Cow position: | chr29:3100203-3100461 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 57 |
| Conread position: | 72-274 |
| Cow position: | chr29:1124699-1124492 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 47, 0 |
Show alignments to all cow chromosomes.