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Cow genome map

           
Conread name:
           
Emb1-C0005178_N04
        

               
Conread position:
               
1-129
               

               
Cow position:
               
chr28:7156826-7156954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-139
               

               
Cow position:
               
chr28:4765663-4765803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1-142
               

               
Cow position:
               
chr28:23410336-23410192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-143
               

               
Cow position:
               
chr28:3160964-3160819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
1-143
               

               
Cow position:
               
chr28:5867716-5867852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
1-143
               

               
Cow position:
               
chr28:29434439-29434296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
1-144
               

               
Cow position:
               
chr28:32174618-32174762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 10
               

               
Conread position:
               
1-151
               

               
Cow position:
               
chr28:34248040-34247891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
130, 118
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr28:8147874-8147725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr28:19026016-19025864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr28:25677353-25677201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 148
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr28:8149643-8149484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
1-162
               

               
Cow position:
               
chr28:2898978-2899138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr28:7437473-7437298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
130, 46
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr28:19295140-19294961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
126, 44
               

               
Conread position:
               
1-193
               

               
Cow position:
               
chr28:4138682-4138486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
128, 148
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr28:9384298-9384109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
92, 111
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr28:11559643-11559453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr28:5650748-5650559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr28:20397381-20397176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
177, 198
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr28:26743615-26743822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
126, 199
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr28:21363736-21363932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
126, 45
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr28:12672476-12672263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
94, 197
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr28:4282501-4282290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
129, 47
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr28:19222161-19221938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
126, 13
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr28:3011280-3011067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
83, 61
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr28:3023924-3023716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
174, 106
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr28:5254863-5255071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
174, 133
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr28:6975230-6975434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
190, 133
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr28:7619161-7618960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr28:11426552-11426348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
191, 118
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr28:11987163-11987363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
31, 65
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr28:12055401-12055601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
31, 65
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr28:15601266-15601474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
150, 47
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr28:21868446-21868657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
173, 144
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr28:23007741-23007542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
187, 126
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr28:31223568-31223357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
95, 26
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr28:4016520-4016727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
195, 122
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr28:8291418-8291618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
182, 28
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr28:26719332-26719535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
194, 126
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr28:27161337-27161111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
125, 79
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr28:3410998-3410783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
83, 126
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr28:4013073-4013289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
126, 146
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr28:4834855-4834636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
133, 88
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr28:7008989-7008775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
182, 133
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr28:8259617-8259838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr28:11346498-11346283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
182, 124
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr28:11422824-11422613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr28:11815089-11814873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
77, 126
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr28:12951412-12951623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
182, 13
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr28:21046587-21046383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
194, 108
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr28:23793322-23793113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
55, 99
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr28:5224696-5224914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
125, 73
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr28:20759712-20759481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
126, 82
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr28:3143886-3143672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
192, 50
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr28:4070956-4071172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
21, 87
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr28:4643781-4643556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
129, 147
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr28:9099925-9100141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
150, 54
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr28:10480818-10480588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
62, 11
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr28:16204345-16204116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
109, 198
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr28:19216811-19217028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
181, 54
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr28:4823593-4823815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
128, 167
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr28:4881251-4881032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
225, 133
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr28:8140471-8140702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
133, 175
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr28:16085314-16085535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
199, 124
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr28:5931345-5931560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr28:7697989-7697762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
126, 46
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr28:11743830-11743612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
130, 36
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr28:1632663-1632427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
130, 19
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr28:5144532-5144296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
126, 201
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr28:6283499-6283273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
130, 51
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr28:8347720-8347952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
124, 147
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr28:11307529-11307300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
115, 191
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr28:11828967-11828742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
132, 21
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr28:13048294-13048060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
126, 28
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr28:20124773-20125000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
57, 113
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr28:17739814-17740047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
126, 41
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr28:19564239-19564016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
182, 118
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr28:3449292-3449529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
106, 142
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr28:11866676-11866449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
195, 125
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr28:21008676-21008451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
174, 66
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr28:25700874-25700649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr28:5630087-5630320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
126, 87
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr28:27313744-27313504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
5, 148
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr28:23296311-23296543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
189, 124
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr28:7132098-7131863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
72, 45
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr28:6059481-6059241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
124, 190
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr28:5204184-5204418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
211, 130
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr28:751216-751457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
129, 83
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr28:4101509-4101746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
48, 132
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr28:4809768-4810003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr28:10495309-10495068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
14, 48
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr28:5231927-5232177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
182, 144
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr28:17012305-17012058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
126, 83
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr28:17949124-17948867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
173, 133
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr28:29850826-29850559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
174, 126
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr28:15362568-15362854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
194, 135
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr28:20313266-20313577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
125, 168
               

               
Conread position:
               
2-152
               

               
Cow position:
               
chr28:2752504-2752353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
2-218
               

               
Cow position:
               
chr28:4937252-4937034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
123, 196
               

               
Conread position:
               
2-220
               

               
Cow position:
               
chr28:5235871-5236081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
193, 105
               

               
Conread position:
               
2-225
               

               
Cow position:
               
chr28:3726221-3725996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
29, 131
               

               
Conread position:
               
2-229
               

               
Cow position:
               
chr28:5437095-5436870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
134, 88
               

               
Conread position:
               
2-232
               

               
Cow position:
               
chr28:19039029-19038800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
123, 152
               

               
Conread position:
               
3-127
               

               
Cow position:
               
chr28:32365835-32365958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr28:17071328-17071532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
123, 145
               

               
Conread position:
               
3-206
               

               
Cow position:
               
chr28:4045840-4046037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
154, 11
               

               
Conread position:
               
3-212
               

               
Cow position:
               
chr28:18797311-18797509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
180, 84
               

               
Conread position:
               
3-232
               

               
Cow position:
               
chr28:2819766-2819992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
173, 131
               

               
Conread position:
               
3-232
               

               
Cow position:
               
chr28:4307906-4307675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
128, 196
               

               
Conread position:
               
3-232
               

               
Cow position:
               
chr28:10053338-10053114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
35, 135
               

               
Conread position:
               
3-232
               

               
Cow position:
               
chr28:10297847-10298058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
3-233
               

               
Cow position:
               
chr28:10615955-10615731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr28:6563907-6563665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
60, 146
               

               
Conread position:
               
3-246
               

               
Cow position:
               
chr28:17680613-17680859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
123, 145
               

               
Conread position:
               
4-138
               

               
Cow position:
               
chr28:3078689-3078555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
122, 71
               

               
Conread position:
               
4-143
               

               
Cow position:
               
chr28:21355223-21355363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
4-182
               

               
Cow position:
               
chr28:2131932-2131755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
122, 142
               

               
Conread position:
               
4-210
               

               
Cow position:
               
chr28:7350646-7350847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
192, 130
               

               
Conread position:
               
4-214
               

               
Cow position:
               
chr28:5188437-5188228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
70, 129
               

               
Conread position:
               
4-214
               

               
Cow position:
               
chr28:24082262-24082471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
171, 127
               

               
Conread position:
               
4-218
               

               
Cow position:
               
chr28:32358100-32358309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
170, 26
               

               
Conread position:
               
4-219
               

               
Cow position:
               
chr28:4181993-4182207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
179, 127
               

               
Conread position:
               
4-219
               

               
Cow position:
               
chr28:13474292-13474505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
167, 128
               

               
Conread position:
               
4-219
               

               
Cow position:
               
chr28:24064903-24064686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
130, 48
               

               
Conread position:
               
4-219
               

               
Cow position:
               
chr28:25056958-25057162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
4-219
               

               
Cow position:
               
chr28:26982746-26982530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
123, 152
               

               
Conread position:
               
4-223
               

               
Cow position:
               
chr28:11884529-11884321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
4-225
               

               
Cow position:
               
chr28:9426358-9426140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
178, 130
               

               
Conread position:
               
4-225
               

               
Cow position:
               
chr28:22132903-22133120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
134, 58
               

               
Conread position:
               
4-226
               

               
Cow position:
               
chr28:777667-777889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
92, 128
               

               
Conread position:
               
4-226
               

               
Cow position:
               
chr28:8827157-8827376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
119, 30
               

               
Conread position:
               
4-228
               

               
Cow position:
               
chr28:9740458-9740673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
4-229
               

               
Cow position:
               
chr28:11585210-11584991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
175, 127
               

               
Conread position:
               
4-230
               

               
Cow position:
               
chr28:21844950-21845168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
192, 10
               

               
Conread position:
               
4-231
               

               
Cow position:
               
chr28:8396327-8396543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
4-232
               

               
Cow position:
               
chr28:4158947-4159180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
127, 200
               

               
Conread position:
               
4-232
               

               
Cow position:
               
chr28:4440288-4440518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
126, 194
               

               
Conread position:
               
4-232
               

               
Cow position:
               
chr28:9705645-9705873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
123, 42
               

               
Conread position:
               
4-232
               

               
Cow position:
               
chr28:16919176-16918955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
171, 63
               

               
Conread position:
               
4-233
               

               
Cow position:
               
chr28:30293596-30293366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
28, 10
               

               
Conread position:
               
4-239
               

               
Cow position:
               
chr28:5199812-5200053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
28, 203
               

               
Conread position:
               
4-245
               

               
Cow position:
               
chr28:13245553-13245794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
123, 194
               

               
Conread position:
               
4-248
               

               
Cow position:
               
chr28:2801218-2801462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
179, 84
               

               
Conread position:
               
4-248
               

               
Cow position:
               
chr28:19128177-19127937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
124, 71
               

               
Conread position:
               
4-265
               

               
Cow position:
               
chr28:15272281-15272020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
122, 144
               

               
Conread position:
               
4-267
               

               
Cow position:
               
chr28:3445489-3445228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
110, 64
               

               
Conread position:
               
4-278
               

               
Cow position:
               
chr28:8304239-8304511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
30, 38
               

               
Conread position:
               
5-129
               

               
Cow position:
               
chr28:17601882-17601758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-207
               

               
Cow position:
               
chr28:12933741-12933542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
27, 130
               

               
Conread position:
               
5-212
               

               
Cow position:
               
chr28:7267950-7267750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
171, 51
               

               
Conread position:
               
5-213
               

               
Cow position:
               
chr28:3492790-3492587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
170, 32
               

               
Conread position:
               
5-213
               

               
Cow position:
               
chr28:9636464-9636257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
170, 129
               

               
Conread position:
               
5-213
               

               
Cow position:
               
chr28:19262594-19262384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
122, 193
               

               
Conread position:
               
5-219
               

               
Cow position:
               
chr28:32179690-32179905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
122, 42
               

               
Conread position:
               
5-225
               

               
Cow position:
               
chr28:8787533-8787751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
170, 70
               

               
Conread position:
               
5-228
               

               
Cow position:
               
chr28:5577519-5577747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
39, 9
               

               
Conread position:
               
5-228
               

               
Cow position:
               
chr28:11527265-11527044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
170, 62
               

               
Conread position:
               
5-235
               

               
Cow position:
               
chr28:28765910-28765683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
118, 143
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chr28:5817833-5818059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
29, 124
               

               
Conread position:
               
5-246
               

               
Cow position:
               
chr28:21207374-21207143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
92, 9
               

               
Conread position:
               
5-248
               

               
Cow position:
               
chr28:10589028-10588798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
186, 103
               

               
Conread position:
               
6-205
               

               
Cow position:
               
chr28:16879567-16879760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
169, 121
               

               
Conread position:
               
6-212
               

               
Cow position:
               
chr28:11016402-11016603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
6-213
               

               
Cow position:
               
chr28:4185901-4186103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
177, 11
               

               
Conread position:
               
6-223
               

               
Cow position:
               
chr28:16370089-16369879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
6-227
               

               
Cow position:
               
chr28:6358420-6358197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
121, 193
               

               
Conread position:
               
6-231
               

               
Cow position:
               
chr28:5805665-5805880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
121, 40
               

               
Conread position:
               
6-232
               

               
Cow position:
               
chr28:3484576-3484805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
91, 18
               

               
Conread position:
               
6-246
               

               
Cow position:
               
chr28:26826217-26826454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
125, 17
               

               
Conread position:
               
8-218
               

               
Cow position:
               
chr28:30902122-30902326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
119, 135
               

               
Conread position:
               
8-223
               

               
Cow position:
               
chr28:5441901-5441688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
118, 59
               

               
Conread position:
               
9-209
               

               
Cow position:
               
chr28:13527193-13527394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
91, 11
               

               
Conread position:
               
9-211
               

               
Cow position:
               
chr28:5684700-5684898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
173, 101
               

               
Conread position:
               
9-233
               

               
Cow position:
               
chr28:5673872-5674092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
105, 116
               

               
Conread position:
               
10-219
               

               
Cow position:
               
chr28:34230226-34230436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
120, 138
               

               
Conread position:
               
10-236
               

               
Cow position:
               
chr28:11411538-11411316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
22, 138
               

               
Conread position:
               
10-265
               

               
Cow position:
               
chr28:4163581-4163329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
119, 37
               

               
Conread position:
               
11-207
               

               
Cow position:
               
chr28:12973880-12974078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
116, 187
               

               
Conread position:
               
12-221
               

               
Cow position:
               
chr28:29042054-29041841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
114, 171
               

               
Conread position:
               
13-228
               

               
Cow position:
               
chr28:11398796-11398581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
118, 135
               

               
Conread position:
               
14-145
               

               
Cow position:
               
chr28:26784239-26784109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
14-212
               

               
Cow position:
               
chr28:7557732-7557528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
14-218
               

               
Cow position:
               
chr28:24996611-24996413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
172, 99
               

               
Conread position:
               
15-143
               

               
Cow position:
               
chr28:18533903-18533775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
15-205
               

               
Cow position:
               
chr28:18608365-18608173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
112, 183
               

               
Conread position:
               
15-230
               

               
Cow position:
               
chr28:9418963-9418732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
112, 198
               

               
Conread position:
               
15-231
               

               
Cow position:
               
chr28:2523946-2524159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
119, 67
               

               
Conread position:
               
16-152
               

               
Cow position:
               
chr28:12385289-12385151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
16-227
               

               
Cow position:
               
chr28:2821257-2821477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
49, 123
               

               
Conread position:
               
17-129
               

               
Cow position:
               
chr28:16691928-16692040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
17-150
               

               
Cow position:
               
chr28:20013440-20013573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
78, 119
               

               
Conread position:
               
17-186
               

               
Cow position:
               
chr28:2743086-2743253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
162, 128
               

               
Conread position:
               
17-214
               

               
Cow position:
               
chr28:3137548-3137754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
93, 188
               

               
Conread position:
               
17-214
               

               
Cow position:
               
chr28:20968575-20968375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
134, 182
               

               
Conread position:
               
17-225
               

               
Cow position:
               
chr28:4022678-4022883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
116, 159
               

               
Conread position:
               
17-227
               

               
Cow position:
               
chr28:5552709-5552492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
115, 11
               

               
Conread position:
               
18-212
               

               
Cow position:
               
chr28:4073975-4074176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
122, 185
               

               
Conread position:
               
18-228
               

               
Cow position:
               
chr28:117757-117544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
60, 68
               

               
Conread position:
               
19-147
               

               
Cow position:
               
chr28:5366116-5365987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
97, 49
               

               
Conread position:
               
19-246
               

               
Cow position:
               
chr28:20046560-20046773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
168, 49
               

               
Conread position:
               
20-174
               

               
Cow position:
               
chr28:8167344-8167193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
20-216
               

               
Cow position:
               
chr28:8716379-8716177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
120, 14
               

               
Conread position:
               
22-182
               

               
Cow position:
               
chr28:13448133-13448292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
23-229
               

               
Cow position:
               
chr28:26820265-26820060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
105, 11
               

               
Conread position:
               
23-230
               

               
Cow position:
               
chr28:19024444-19024668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
110, 189
               

               
Conread position:
               
23-233
               

               
Cow position:
               
chr28:32014795-32015005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
108, 123
               

               
Conread position:
               
24-214
               

               
Cow position:
               
chr28:34081849-34081670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
123, 10
               

               
Conread position:
               
24-232
               

               
Cow position:
               
chr28:13356359-13356149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
25-230
               

               
Cow position:
               
chr28:659282-659069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
105, 139
               

               
Conread position:
               
25-232
               

               
Cow position:
               
chr28:4876456-4876657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
150, 42
               

               
Conread position:
               
25-232
               

               
Cow position:
               
chr28:4884243-4884036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 123
               

               
Conread position:
               
25-234
               

               
Cow position:
               
chr28:4877418-4877212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
113, 151
               

               
Conread position:
               
26-212
               

               
Cow position:
               
chr28:10252903-10252716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
157, 171
               

               
Conread position:
               
27-232
               

               
Cow position:
               
chr28:11827703-11827907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
100, 29
               

               
Conread position:
               
28-151
               

               
Cow position:
               
chr28:11365511-11365389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
28-224
               

               
Cow position:
               
chr28:2777546-2777741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
147, 103
               

               
Conread position:
               
28-230
               

               
Cow position:
               
chr28:7644756-7644963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
47, 65
               

               
Conread position:
               
29-244
               

               
Cow position:
               
chr28:22332545-22332758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
105, 124
               

               
Conread position:
               
32-236
               

               
Cow position:
               
chr28:19394893-19395084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
33-225
               

               
Cow position:
               
chr28:11562226-11562032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
11, 122
               

               
Conread position:
               
33-227
               

               
Cow position:
               
chr28:10958823-10959013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
149, 101
               

               
Conread position:
               
33-228
               

               
Cow position:
               
chr28:118630-118828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
45, 53
               

               
Conread position:
               
33-228
               

               
Cow position:
               
chr28:9109237-9109426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
158, 77
               

               
Conread position:
               
33-232
               

               
Cow position:
               
chr28:7964657-7964459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
150, 112
               

               
Conread position:
               
33-236
               

               
Cow position:
               
chr28:5609896-5609696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
150, 91
               

               
Conread position:
               
33-283
               

               
Cow position:
               
chr28:17620339-17620094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
98, 23
               

               
Conread position:
               
34-233
               

               
Cow position:
               
chr28:13371125-13370921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
63, 119
               

               
Conread position:
               
34-234
               

               
Cow position:
               
chr28:3678384-3678580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
141, 102
               

               
Conread position:
               
34-236
               

               
Cow position:
               
chr28:4027440-4027246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
161, 19
               

               
Conread position:
               
35-225
               

               
Cow position:
               
chr28:8681405-8681225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
160, 12
               

               
Conread position:
               
40-161
               

               
Cow position:
               
chr28:8258852-8258970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
40-213
               

               
Cow position:
               
chr28:20281786-20281948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
40-226
               

               
Cow position:
               
chr28:2077528-2077713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
90, 106
               

               
Conread position:
               
41-204
               

               
Cow position:
               
chr28:3729990-3729829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
95, 143
               

               
Conread position:
               
41-228
               

               
Cow position:
               
chr28:28903531-28903344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
89, 105
               

               
Conread position:
               
42-160
               

               
Cow position:
               
chr28:26269416-26269535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
108, 92
               

               
Conread position:
               
43-201
               

               
Cow position:
               
chr28:19118000-19118160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
80, 155
               

               
Conread position:
               
43-232
               

               
Cow position:
               
chr28:4077315-4077119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
81, 161
               

               
Conread position:
               
48-213
               

               
Cow position:
               
chr28:4227512-4227676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
96, 14
               

               
Conread position:
               
48-215
               

               
Cow position:
               
chr28:2151404-2151238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
103, 78
               

               
Conread position:
               
48-232
               

               
Cow position:
               
chr28:8936186-8936366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
127, 65
               

               
Conread position:
               
48-232
               

               
Cow position:
               
chr28:9677705-9677880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
48-254
               

               
Cow position:
               
chr28:26868115-26867916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
147, 79
               

               
Conread position:
               
48-257
               

               
Cow position:
               
chr28:11305597-11305389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
131, 86
               

               
Conread position:
               
49-213
               

               
Cow position:
               
chr28:10762931-10763088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
130, 91
               

               
Conread position:
               
49-228
               

               
Cow position:
               
chr28:26960872-26960698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
147, 71
               

               
Conread position:
               
50-236
               

               
Cow position:
               
chr28:25518727-25518531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
77, 143
               

               
Conread position:
               
52-232
               

               
Cow position:
               
chr28:16200703-16200521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
79, 146
               

               
Conread position:
               
52-249
               

               
Cow position:
               
chr28:6301121-6301318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
74, 164
               

               
Conread position:
               
53-174
               

               
Cow position:
               
chr28:24726396-24726280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
53-225
               

               
Cow position:
               
chr28:26574451-26574611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
53-233
               

               
Cow position:
               
chr28:3759031-3759214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
74, 168
               

               
Conread position:
               
53-249
               

               
Cow position:
               
chr28:29500441-29500639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
78, 149
               

               
Conread position:
               
57-232
               

               
Cow position:
               
chr28:21118722-21118898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
70, 141
               

               
Conread position:
               
61-219
               

               
Cow position:
               
chr28:3494404-3494567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
77, 140
               

               
Conread position:
               
65-262
               

               
Cow position:
               
chr28:24767457-24767658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
66-213
               

               
Cow position:
               
chr28:21263211-21263354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
117, 68
               

               
Conread position:
               
68-231
               

               
Cow position:
               
chr28:3311168-3311002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
59, 80
               

               
Conread position:
               
69-224
               

               
Cow position:
               
chr28:22278575-22278412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
58, 133
               

               
Conread position:
               
70-212
               

               
Cow position:
               
chr28:22183083-22182934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
57, 133
               

               
Conread position:
               
76-233
               

               
Cow position:
               
chr28:5294937-5294780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
51, 7
               
Show alignments to all cow chromosomes.