Cow genome map
| Conread name: | Emb1-C0005179_B14 |
| Conread position: | 1-182 |
| Cow position: | chr10:20268182-20267997 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 1-342 |
| Cow position: | chr10:14948774-14949127 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 247 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 1-342 |
| Cow position: | chr10:21450688-21450336 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 254 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 49, 8 |
| Conread position: | 1-342 |
| Cow position: | chr10:48657603-48657280 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 2-288 |
| Cow position: | chr10:16552757-16552474 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 6 |
| Conread position: | 2-294 |
| Cow position: | chr10:53318276-53317980 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 48, 30 |
| Conread position: | 4-342 |
| Cow position: | chr10:12669167-12669509 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 31 |
| Conread position: | 5-334 |
| Cow position: | chr10:19542911-19542586 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 11, 22 |
| Conread position: | 5-336 |
| Cow position: | chr10:44670144-44669803 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 27 |
| Conread position: | 6-342 |
| Cow position: | chr10:25004428-25004779 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 7-235 |
| Cow position: | chr10:6287265-6287494 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-266 |
| Cow position: | chr10:54988377-54988642 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 43, 176 |
| Conread position: | 7-295 |
| Cow position: | chr10:8681139-8681433 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 43, 176 |
| Conread position: | 7-295 |
| Cow position: | chr10:23848481-23848775 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 7-295 |
| Cow position: | chr10:41879455-41879749 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-319 |
| Cow position: | chr10:57554820-57554502 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-328 |
| Cow position: | chr10:37772408-37772737 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-340 |
| Cow position: | chr10:20538823-20539179 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 52, 45 |
| Conread position: | 7-342 |
| Cow position: | chr10:19513747-19514097 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 7-342 |
| Cow position: | chr10:21489461-21489804 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 14, 26 |
| Conread position: | 7-342 |
| Cow position: | chr10:21897134-21896781 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 7-342 |
| Cow position: | chr10:22343993-22344332 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-342 |
| Cow position: | chr10:25255283-25255623 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 43, 25 |
| Conread position: | 7-342 |
| Cow position: | chr10:30688515-30688864 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-342 |
| Cow position: | chr10:32830158-32830506 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 46, 69 |
| Conread position: | 7-342 |
| Cow position: | chr10:39849708-39849358 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 43, 110 |
| Conread position: | 7-342 |
| Cow position: | chr10:44706192-44705841 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 43, 138 |
| Conread position: | 7-342 |
| Cow position: | chr10:47909138-47909483 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 8-283 |
| Cow position: | chr10:34667511-34667245 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 8-343 |
| Cow position: | chr10:40348137-40347789 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 9-342 |
| Cow position: | chr10:51780926-51780573 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 10-287 |
| Cow position: | chr10:41772926-41772652 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 11, 20 |
| Conread position: | 15-342 |
| Cow position: | chr10:26670193-26670534 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 182 |
| Conread position: | 16-342 |
| Cow position: | chr10:29629744-29629404 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 16-342 |
| Cow position: | chr10:42744126-42744461 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 20-248 |
| Cow position: | chr10:53319731-53319516 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-294 |
| Cow position: | chr10:2118494-2118216 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-295 |
| Cow position: | chr10:28031396-28031129 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-295 |
| Cow position: | chr10:41149210-41148931 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr10:1380031-1380365 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr10:14333312-14332976 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr10:16928688-16929023 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 236 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 88, 9 |
| Conread position: | 20-342 |
| Cow position: | chr10:21426770-21426438 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr10:30682959-30682624 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr10:50017832-50017498 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr10:55026391-55026707 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr10:57987170-57986829 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr10:62406241-62405905 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 22-289 |
| Cow position: | chr10:22635482-22635229 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 30, 11 |
| Conread position: | 23-291 |
| Cow position: | chr10:26931506-26931776 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 27-342 |
| Cow position: | chr10:63812845-63812515 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 23, 249 |
| Conread position: | 28-235 |
| Cow position: | chr10:14350949-14351157 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 22, 89 |
| Conread position: | 28-295 |
| Cow position: | chr10:25650881-25650609 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 22, 89 |
| Conread position: | 28-295 |
| Cow position: | chr10:32086226-32086497 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 118 |
| Conread position: | 28-332 |
| Cow position: | chr10:39210300-39210606 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 22, 114 |
| Conread position: | 28-340 |
| Cow position: | chr10:63625598-63625926 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 22, 316 |
| Conread position: | 28-342 |
| Cow position: | chr10:15620843-15620522 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 164 |
| Conread position: | 28-342 |
| Cow position: | chr10:41159953-41160282 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 28-342 |
| Cow position: | chr10:46762738-46763067 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 29-265 |
| Cow position: | chr10:38342824-38342582 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 29-330 |
| Cow position: | chr10:24783340-24783045 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 24, 98 |
| Conread position: | 29-341 |
| Cow position: | chr10:38842704-38843031 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 29-342 |
| Cow position: | chr10:7279561-7279237 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 21, 101 |
| Conread position: | 29-342 |
| Cow position: | chr10:10685855-10686184 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 5, 72 |
| Conread position: | 29-342 |
| Cow position: | chr10:19142067-19141744 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 89 |
| Conread position: | 29-342 |
| Cow position: | chr10:32703303-32703628 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 21, 145 |
| Conread position: | 29-342 |
| Cow position: | chr10:51557937-51558265 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 30-341 |
| Cow position: | chr10:22104028-22104344 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 95, 22 |
| Conread position: | 31-338 |
| Cow position: | chr10:42635290-42635594 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 19, 86 |
| Conread position: | 31-342 |
| Cow position: | chr10:23411587-23411911 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 77, 112 |
| Conread position: | 34-342 |
| Cow position: | chr10:42115795-42116105 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 10, 37 |
| Conread position: | 40-333 |
| Cow position: | chr10:41635977-41636268 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 43-295 |
| Cow position: | chr10:44723953-44723696 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 82, 139 |
| Conread position: | 48-342 |
| Cow position: | chr10:22907574-22907261 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 49-295 |
| Cow position: | chr10:2847462-2847710 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 58, 93 |
| Conread position: | 52-342 |
| Cow position: | chr10:17435855-17436131 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 198, 45 |
| Conread position: | 56-342 |
| Cow position: | chr10:22645601-22645895 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 52, 148 |
| Conread position: | 58-342 |
| Cow position: | chr10:39440750-39441035 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 152 |
| Conread position: | 69-342 |
| Cow position: | chr10:4183999-4183708 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 82-342 |
| Cow position: | chr10:17921737-17921996 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 109, 56 |
| Conread position: | 148-342 |
| Cow position: | chr10:37531141-37530936 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 151-342 |
| Cow position: | chr10:4344490-4344294 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 146, 82 |
Show alignments to all cow chromosomes.