Cow genome map
| Conread name: | Emb1-C0005179_B14 |
| Conread position: | 1-170 |
| Cow position: | chr11:7481931-7482104 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 1-249 |
| Cow position: | chr11:22725828-22726067 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 1-289 |
| Cow position: | chr11:3370631-3370336 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 22, 7 |
| Conread position: | 1-342 |
| Cow position: | chr11:3262859-3263208 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 1-342 |
| Cow position: | chr11:27834598-27834259 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 24, 8 |
| Conread position: | 1-342 |
| Cow position: | chr11:49038241-49037884 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 5-293 |
| Cow position: | chr11:21888272-21887982 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 16, 25 |
| Conread position: | 6-295 |
| Cow position: | chr11:10129588-10129302 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 44, 125 |
| Conread position: | 6-304 |
| Cow position: | chr11:85731863-85731559 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 15, 30 |
| Conread position: | 6-342 |
| Cow position: | chr11:8562283-8562624 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 103 |
| Conread position: | 6-342 |
| Cow position: | chr11:47973699-47973348 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 7-160 |
| Cow position: | chr11:1487956-1487799 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 7-173 |
| Cow position: | chr11:72017937-72018107 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 14, 27 |
| Conread position: | 7-249 |
| Cow position: | chr11:41422752-41422505 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 43, 176 |
| Conread position: | 7-289 |
| Cow position: | chr11:57626020-57625733 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 7-295 |
| Cow position: | chr11:2350106-2350400 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-295 |
| Cow position: | chr11:15987410-15987700 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-295 |
| Cow position: | chr11:20732069-20731775 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-295 |
| Cow position: | chr11:25099016-25098722 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 43, 176 |
| Conread position: | 7-295 |
| Cow position: | chr11:32454215-32454508 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 7-295 |
| Cow position: | chr11:38575329-38575035 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-295 |
| Cow position: | chr11:39585568-39585274 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 43, 176 |
| Conread position: | 7-295 |
| Cow position: | chr11:41234828-41235122 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 7-295 |
| Cow position: | chr11:41744714-41745008 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 7-295 |
| Cow position: | chr11:47737388-47737098 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-295 |
| Cow position: | chr11:73799546-73799252 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-295 |
| Cow position: | chr11:75392406-75392700 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 43, 176 |
| Conread position: | 7-295 |
| Cow position: | chr11:84966271-84966561 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 204 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-319 |
| Cow position: | chr11:27725747-27725429 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 221 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 43, 251 |
| Conread position: | 7-342 |
| Cow position: | chr11:418565-418226 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 101, 48 |
| Conread position: | 7-342 |
| Cow position: | chr11:14260894-14260544 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 7-342 |
| Cow position: | chr11:17105528-17105186 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-342 |
| Cow position: | chr11:22934436-22934094 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 45 |
| Conread position: | 7-342 |
| Cow position: | chr11:58138865-58139213 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 245 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 7-342 |
| Cow position: | chr11:74346559-74346909 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 7-342 |
| Cow position: | chr11:76371901-76371562 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 43, 91 |
| Conread position: | 7-343 |
| Cow position: | chr11:30105039-30104688 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 8-342 |
| Cow position: | chr11:35143164-35142828 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 232 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 10-346 |
| Cow position: | chr11:55484408-55484753 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 40, 19 |
| Conread position: | 13-297 |
| Cow position: | chr11:67864113-67863826 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 14-289 |
| Cow position: | chr11:35571415-35571135 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 36, 15 |
| Conread position: | 14-342 |
| Cow position: | chr11:10884460-10884789 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 15-297 |
| Cow position: | chr11:7109246-7108972 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 94, 14 |
| Conread position: | 15-334 |
| Cow position: | chr11:33864127-33863802 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 35, 25 |
| Conread position: | 16-287 |
| Cow position: | chr11:39483465-39483727 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 20-290 |
| Cow position: | chr11:44154920-44154639 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-295 |
| Cow position: | chr11:10850288-10850567 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-297 |
| Cow position: | chr11:53429854-53429572 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 29, 9 |
| Conread position: | 20-342 |
| Cow position: | chr11:7926918-7926576 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 20-342 |
| Cow position: | chr11:9155020-9154684 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr11:11990156-11990492 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 235 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 33, 9 |
| Conread position: | 20-342 |
| Cow position: | chr11:15126985-15127318 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr11:26122750-26122418 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr11:27659416-27659754 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 244 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr11:27937575-27937907 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 9 |
| Conread position: | 20-342 |
| Cow position: | chr11:32078612-32078276 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr11:38833305-38832975 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr11:41168527-41168191 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 234 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr11:43511804-43511468 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr11:44581063-44580726 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr11:71331670-71332005 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 238 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr11:85391656-85391342 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 28-297 |
| Cow position: | chr11:17548334-17548607 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 22, 228 |
| Conread position: | 28-341 |
| Cow position: | chr11:39805890-39806199 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 22, 105 |
| Conread position: | 28-342 |
| Cow position: | chr11:49172326-49171997 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 30, 25 |
| Conread position: | 28-342 |
| Cow position: | chr11:61398435-61398110 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 29-342 |
| Cow position: | chr11:7228429-7228757 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 233 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 31-279 |
| Cow position: | chr11:26654795-26655045 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 19, 133 |
| Conread position: | 31-295 |
| Cow position: | chr11:39807103-39807373 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 19, 115 |
| Conread position: | 36-294 |
| Cow position: | chr11:2834462-2834723 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 17, 132 |
| Conread position: | 36-342 |
| Cow position: | chr11:8265711-8266033 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 14, 110 |
| Conread position: | 40-283 |
| Cow position: | chr11:15250633-15250388 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 13, 109 |
| Conread position: | 46-342 |
| Cow position: | chr11:16120237-16119933 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 180 |
| Conread position: | 49-196 |
| Cow position: | chr11:45871493-45871345 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 49-342 |
| Cow position: | chr11:23124731-23124442 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 54, 21 |
| Conread position: | 52-237 |
| Cow position: | chr11:54174265-54174455 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 87 |
| Conread position: | 53-324 |
| Cow position: | chr11:33104677-33104945 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 56, 110 |
| Conread position: | 66-302 |
| Cow position: | chr11:17834353-17834121 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 10, 138 |
| Conread position: | 69-342 |
| Cow position: | chr11:45652690-45652403 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 30, 76 |
| Conread position: | 113-294 |
| Cow position: | chr11:59457095-59457272 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 141, 61 |
| Conread position: | 143-342 |
| Cow position: | chr11:82146343-82146139 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 112, 90 |
Show alignments to all cow chromosomes.