Cow genome map
| Conread name: | Emb1-C0005179_B14 |
| Conread position: | 1-289 |
| Cow position: | chr13:47368391-47368685 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 43, 27 |
| Conread position: | 1-342 |
| Cow position: | chr13:39042135-39041785 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 7 |
| Conread position: | 2-342 |
| Cow position: | chr13:11169895-11169561 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 48, 27 |
| Conread position: | 4-343 |
| Cow position: | chr13:19290981-19290639 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 243 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 7-245 |
| Cow position: | chr13:3692718-3692475 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 43, 176 |
| Conread position: | 7-295 |
| Cow position: | chr13:11737985-11738279 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 43, 176 |
| Conread position: | 7-295 |
| Cow position: | chr13:47729263-47729557 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 43, 176 |
| Conread position: | 7-295 |
| Cow position: | chr13:51006795-51006501 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 43, 176 |
| Conread position: | 7-334 |
| Cow position: | chr13:51465970-51465628 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 43, 176 |
| Conread position: | 7-342 |
| Cow position: | chr13:5499758-5499408 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 245 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-342 |
| Cow position: | chr13:19115169-19114841 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 7-342 |
| Cow position: | chr13:30653057-30652710 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 43, 171 |
| Conread position: | 7-342 |
| Cow position: | chr13:34509581-34509237 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 120 |
| Conread position: | 7-342 |
| Cow position: | chr13:51769538-51769881 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 242 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 14, 26 |
| Conread position: | 7-342 |
| Cow position: | chr13:54312290-54312631 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 8-289 |
| Cow position: | chr13:34050930-34051222 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 16, 22 |
| Conread position: | 8-340 |
| Cow position: | chr13:34322728-34322387 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 8-342 |
| Cow position: | chr13:114269-114617 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 42, 28 |
| Conread position: | 9-334 |
| Cow position: | chr13:17480506-17480179 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 13, 28 |
| Conread position: | 15-297 |
| Cow position: | chr13:33632885-33632623 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 16-247 |
| Cow position: | chr13:32536680-32536441 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 16-297 |
| Cow position: | chr13:669485-669765 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 20-295 |
| Cow position: | chr13:35759802-35760080 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 88, 9 |
| Conread position: | 20-302 |
| Cow position: | chr13:60921528-60921248 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr13:4486097-4486431 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr13:13902104-13902438 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr13:32734944-32734608 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 239 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr13:33334105-33333774 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr13:34040098-34039762 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 229 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-343 |
| Cow position: | chr13:54239181-54238850 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 230 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 105, 9 |
| Conread position: | 28-288 |
| Cow position: | chr13:8649476-8649734 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 22, 106 |
| Conread position: | 28-289 |
| Cow position: | chr13:25881500-25881755 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 23, 77 |
| Conread position: | 28-294 |
| Cow position: | chr13:22275061-22275323 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 22, 149 |
| Conread position: | 28-295 |
| Cow position: | chr13:33523706-33523434 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 22, 118 |
| Conread position: | 28-295 |
| Cow position: | chr13:43891483-43891756 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 22, 155 |
| Conread position: | 28-342 |
| Cow position: | chr13:19565969-19566297 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 61, 117 |
| Conread position: | 28-342 |
| Cow position: | chr13:50111719-50112044 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 22, 210 |
| Conread position: | 28-342 |
| Cow position: | chr13:60698549-60698223 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 22, 43 |
| Conread position: | 29-295 |
| Cow position: | chr13:4943636-4943907 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 21, 260 |
| Conread position: | 29-342 |
| Cow position: | chr13:9300422-9300749 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 21, 150 |
| Conread position: | 29-342 |
| Cow position: | chr13:15279539-15279231 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 21, 89 |
| Conread position: | 29-342 |
| Cow position: | chr13:15922207-15921879 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 232 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 29-342 |
| Cow position: | chr13:48548404-48548724 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 30-341 |
| Cow position: | chr13:32549011-32549337 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 20, 116 |
| Conread position: | 31-319 |
| Cow position: | chr13:3313880-3314173 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 19, 57 |
| Conread position: | 34-334 |
| Cow position: | chr13:19423891-19424194 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 31, 56 |
| Conread position: | 43-295 |
| Cow position: | chr13:47024062-47024319 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 82, 140 |
| Conread position: | 47-342 |
| Cow position: | chr13:57026141-57026442 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 57 |
| Conread position: | 58-290 |
| Cow position: | chr13:32724249-32724482 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 110, 120 |
| Conread position: | 58-290 |
| Cow position: | chr13:50080899-50080662 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 58-342 |
| Cow position: | chr13:18330845-18330547 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 65-302 |
| Cow position: | chr13:55962648-55962882 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 41, 155 |
| Conread position: | 74-342 |
| Cow position: | chr13:18976379-18976106 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 178, 56 |
| Conread position: | 78-342 |
| Cow position: | chr13:38611526-38611802 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 47, 62 |
| Conread position: | 147-342 |
| Cow position: | chr13:33169375-33169175 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 137, 107 |
| Conread position: | 178-342 |
| Cow position: | chr13:26080222-26080397 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 8, 0 |
Show alignments to all cow chromosomes.