Cow genome map
| Conread name: | Emb1-C0005179_B14 |
| Conread position: | 1-342 |
| Cow position: | chr16:19672612-19672265 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 256 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 20, 8 |
| Conread position: | 2-287 |
| Cow position: | chr16:4847148-4846862 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 6 |
| Conread position: | 2-344 |
| Cow position: | chr16:47475771-47476121 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 249 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 18, 7 |
| Conread position: | 4-342 |
| Cow position: | chr16:20969047-20968695 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 17, 26 |
| Conread position: | 6-295 |
| Cow position: | chr16:24811717-24812007 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 16, 24 |
| Conread position: | 6-342 |
| Cow position: | chr16:25955810-25955473 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 253 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 7-235 |
| Cow position: | chr16:47787713-47787946 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 43, 176 |
| Conread position: | 7-242 |
| Cow position: | chr16:53446016-53445776 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 43, 176 |
| Conread position: | 7-265 |
| Cow position: | chr16:26652374-26652638 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 43, 139 |
| Conread position: | 7-287 |
| Cow position: | chr16:5528944-5529228 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 43, 176 |
| Conread position: | 7-289 |
| Cow position: | chr16:25167847-25168133 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 14, 26 |
| Conread position: | 7-290 |
| Cow position: | chr16:51402095-51401807 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 43, 188 |
| Conread position: | 7-295 |
| Cow position: | chr16:20277608-20277902 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 7-295 |
| Cow position: | chr16:26092139-26091845 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 7-298 |
| Cow position: | chr16:36164520-36164811 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 16, 25 |
| Conread position: | 7-327 |
| Cow position: | chr16:11284976-11285303 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 43, 135 |
| Conread position: | 7-327 |
| Cow position: | chr16:15980631-15980306 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-334 |
| Cow position: | chr16:9416931-9416596 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-334 |
| Cow position: | chr16:52627130-52627459 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 18, 29 |
| Conread position: | 7-342 |
| Cow position: | chr16:5762538-5762896 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 7-342 |
| Cow position: | chr16:47403138-47403488 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 243 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 8-342 |
| Cow position: | chr16:3031746-3031396 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 9-297 |
| Cow position: | chr16:18495988-18495698 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 41, 194 |
| Conread position: | 9-342 |
| Cow position: | chr16:10966453-10966129 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 10-295 |
| Cow position: | chr16:7200013-7199724 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 205 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 40, 26 |
| Conread position: | 14-262 |
| Cow position: | chr16:23800872-23800618 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 97, 18 |
| Conread position: | 16-342 |
| Cow position: | chr16:5633544-5633211 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 17-212 |
| Cow position: | chr16:30999992-31000193 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 20-295 |
| Cow position: | chr16:15494229-15494508 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-296 |
| Cow position: | chr16:23672381-23672654 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 20-342 |
| Cow position: | chr16:3144626-3144294 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr16:3149258-3148926 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr16:3770242-3769906 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 38, 9 |
| Conread position: | 20-342 |
| Cow position: | chr16:5487539-5487876 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr16:8814335-8813996 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr16:12161510-12161175 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr16:16268125-16267792 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr16:25343745-25344082 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 241 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr16:25455693-25455358 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 237 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 30, 16 |
| Conread position: | 20-342 |
| Cow position: | chr16:26665485-26665820 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr16:27711405-27711073 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 20-342 |
| Cow position: | chr16:37479092-37478756 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr16:45705022-45704687 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 240 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 20-343 |
| Cow position: | chr16:32325624-32325959 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 21-297 |
| Cow position: | chr16:51040319-51040604 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 32, 8 |
| Conread position: | 28-310 |
| Cow position: | chr16:5526326-5526042 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 28-340 |
| Cow position: | chr16:2303904-2304230 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 142 |
| Conread position: | 28-342 |
| Cow position: | chr16:28168542-28168213 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 28-342 |
| Cow position: | chr16:28194524-28194196 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 22, 261 |
| Conread position: | 28-342 |
| Cow position: | chr16:34505473-34505803 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 231 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 28-343 |
| Cow position: | chr16:1862221-1862547 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 82, 195 |
| Conread position: | 29-342 |
| Cow position: | chr16:23985087-23985415 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 29-342 |
| Cow position: | chr16:25443653-25443981 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 29-342 |
| Cow position: | chr16:43895486-43895158 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 31-342 |
| Cow position: | chr16:27007225-27007543 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 237 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 29, 10 |
| Conread position: | 34-327 |
| Cow position: | chr16:15411266-15410972 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 16, 150 |
| Conread position: | 34-334 |
| Cow position: | chr16:29035679-29035990 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 16, 205 |
| Conread position: | 36-342 |
| Cow position: | chr16:1565889-1565572 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 39-295 |
| Cow position: | chr16:56861096-56861358 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 11, 144 |
| Conread position: | 42-342 |
| Cow position: | chr16:25453714-25453406 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 67, 22 |
| Conread position: | 49-295 |
| Cow position: | chr16:51998573-51998329 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 86, 121 |
| Conread position: | 69-342 |
| Cow position: | chr16:23250170-23249885 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 49, 120 |
| Conread position: | 77-282 |
| Cow position: | chr16:6267116-6266910 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 29, 108 |
| Conread position: | 97-341 |
| Cow position: | chr16:16031744-16031998 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 101-342 |
| Cow position: | chr16:24924640-24924889 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 42, 126 |
Show alignments to all cow chromosomes.