Cow genome map
| Conread name: | Emb1-C0005179_B14 |
| Conread position: | 1-163 |
| Cow position: | chr21:31973359-31973194 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 1-274 |
| Cow position: | chr21:17224230-17223955 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 10 |
| Conread position: | 1-296 |
| Cow position: | chr21:21132164-21131864 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 7 |
| Conread position: | 1-340 |
| Cow position: | chr21:25126716-25127062 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 29 |
| Conread position: | 1-341 |
| Cow position: | chr21:44531812-44532158 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 4-334 |
| Cow position: | chr21:15445958-15445603 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 26, 5 |
| Conread position: | 6-334 |
| Cow position: | chr21:32397433-32397090 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 242 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 7-271 |
| Cow position: | chr21:5544031-5543761 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 43, 176 |
| Conread position: | 7-289 |
| Cow position: | chr21:28879096-28878810 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 44, 22 |
| Conread position: | 7-301 |
| Cow position: | chr21:21918102-21918409 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 7-332 |
| Cow position: | chr21:5631356-5631039 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 15, 23 |
| Conread position: | 7-332 |
| Cow position: | chr21:44075900-44076240 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 7-338 |
| Cow position: | chr21:34255974-34255627 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 43, 138 |
| Conread position: | 7-342 |
| Cow position: | chr21:469721-470064 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 43, 133 |
| Conread position: | 7-342 |
| Cow position: | chr21:2418824-2419165 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-342 |
| Cow position: | chr21:4078666-4079011 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 245 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 43, 204 |
| Conread position: | 7-342 |
| Cow position: | chr21:4717560-4717900 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 7-342 |
| Cow position: | chr21:24948725-24949083 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 248 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 7-342 |
| Cow position: | chr21:27148937-27148585 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-342 |
| Cow position: | chr21:30352573-30352894 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-342 |
| Cow position: | chr21:34656580-34656923 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-342 |
| Cow position: | chr21:39225437-39225092 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 240 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-342 |
| Cow position: | chr21:47943570-47943918 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 236 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 43, 166 |
| Conread position: | 7-343 |
| Cow position: | chr21:4481915-4482266 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 244 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 19, 26 |
| Conread position: | 8-342 |
| Cow position: | chr21:4880815-4880468 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 9, 23 |
| Conread position: | 9-181 |
| Cow position: | chr21:22943238-22943414 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 41, 20 |
| Conread position: | 9-247 |
| Cow position: | chr21:29000550-29000791 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 11, 20 |
| Conread position: | 18-334 |
| Cow position: | chr21:39093405-39093717 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 31, 60 |
| Conread position: | 19-337 |
| Cow position: | chr21:47375767-47376088 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 31, 10 |
| Conread position: | 20-242 |
| Cow position: | chr21:10569326-10569551 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 14 |
| Conread position: | 20-289 |
| Cow position: | chr21:24083717-24083447 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 50 |
| Conread position: | 20-337 |
| Cow position: | chr21:40268751-40268429 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 31, 9 |
| Conread position: | 20-341 |
| Cow position: | chr21:26401134-26400799 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-341 |
| Cow position: | chr21:38019863-38020198 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 12 |
| Conread position: | 20-341 |
| Cow position: | chr21:44763329-44762994 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 31, 9 |
| Conread position: | 20-342 |
| Cow position: | chr21:148780-149116 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 29, 9 |
| Conread position: | 20-342 |
| Cow position: | chr21:3781419-3781743 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr21:4566629-4566956 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 38, 9 |
| Conread position: | 20-342 |
| Cow position: | chr21:17143309-17143646 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 240 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr21:25189274-25189610 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 228 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr21:33256187-33256523 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 23-271 |
| Cow position: | chr21:37039981-37039733 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 27, 6 |
| Conread position: | 28-295 |
| Cow position: | chr21:36375628-36375900 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 22, 118 |
| Conread position: | 29-342 |
| Cow position: | chr21:2879187-2878859 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 29-342 |
| Cow position: | chr21:30596448-30596121 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 30-342 |
| Cow position: | chr21:27126086-27125757 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 43-334 |
| Cow position: | chr21:28258326-28258631 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 65, 126 |
| Conread position: | 49-296 |
| Cow position: | chr21:24886321-24886567 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 64, 20 |
| Conread position: | 56-291 |
| Cow position: | chr21:32831573-32831348 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 52, 20 |
| Conread position: | 56-342 |
| Cow position: | chr21:3116208-3116497 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 33, 74 |
| Conread position: | 57-342 |
| Cow position: | chr21:49648305-49648003 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 52, 12 |
| Conread position: | 70-340 |
| Cow position: | chr21:4738349-4738608 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 204 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 47, 60 |
| Conread position: | 70-342 |
| Cow position: | chr21:20912253-20911975 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 28, 133 |
| Conread position: | 79-340 |
| Cow position: | chr21:44406-44667 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 33, 101 |
| Conread position: | 155-342 |
| Cow position: | chr21:10235212-10235015 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 97, 0 |
Show alignments to all cow chromosomes.