Cow genome map
| Conread name: | Emb1-C0005179_B14 |
| Conread position: | 1-173 |
| Cow position: | chr4:58662145-58661968 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 20, 10 |
| Conread position: | 1-294 |
| Cow position: | chr4:22026255-22025957 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 7 |
| Conread position: | 1-342 |
| Cow position: | chr4:44736284-44736623 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 253 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 162, 28 |
| Conread position: | 1-342 |
| Cow position: | chr4:55272309-55272665 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 24 |
| Conread position: | 6-235 |
| Cow position: | chr4:20605825-20606056 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 102, 21 |
| Conread position: | 6-242 |
| Cow position: | chr4:25736884-25737121 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 9, 134 |
| Conread position: | 6-342 |
| Cow position: | chr4:17539831-17539486 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 7-181 |
| Cow position: | chr4:52961795-52961620 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 7-218 |
| Cow position: | chr4:30541280-30541068 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-243 |
| Cow position: | chr4:32214349-32214590 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-295 |
| Cow position: | chr4:6864054-6863764 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 14, 28 |
| Conread position: | 7-295 |
| Cow position: | chr4:21973481-21973197 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 218 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 15, 23 |
| Conread position: | 7-295 |
| Cow position: | chr4:30577900-30578194 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 43, 176 |
| Conread position: | 7-295 |
| Cow position: | chr4:41956940-41957230 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-295 |
| Cow position: | chr4:58622352-58622058 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 7-295 |
| Cow position: | chr4:65889762-65890046 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 7-297 |
| Cow position: | chr4:18336773-18336477 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-300 |
| Cow position: | chr4:58812660-58812959 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 43, 176 |
| Conread position: | 7-319 |
| Cow position: | chr4:40217015-40217333 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-342 |
| Cow position: | chr4:1048078-1047728 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-342 |
| Cow position: | chr4:11108896-11108552 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 53, 45 |
| Conread position: | 7-342 |
| Cow position: | chr4:14794624-14794973 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 243 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 13, 26 |
| Conread position: | 7-342 |
| Cow position: | chr4:21573940-21574285 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 7-342 |
| Cow position: | chr4:28834740-28835085 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 42, 237 |
| Conread position: | 7-342 |
| Cow position: | chr4:42589445-42589103 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-342 |
| Cow position: | chr4:56961115-56961455 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 7-342 |
| Cow position: | chr4:62558391-62558045 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 43, 169 |
| Conread position: | 7-342 |
| Cow position: | chr4:63000318-63000664 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-342 |
| Cow position: | chr4:67796474-67796114 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-343 |
| Cow position: | chr4:9040120-9040469 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 244 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 43, 176 |
| Conread position: | 8-273 |
| Cow position: | chr4:62170978-62171246 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 8-319 |
| Cow position: | chr4:5611818-5611507 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 42, 180 |
| Conread position: | 8-342 |
| Cow position: | chr4:10542262-10541922 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 21 |
| Conread position: | 9-334 |
| Cow position: | chr4:38931548-38931876 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 41, 13 |
| Conread position: | 11-334 |
| Cow position: | chr4:55362814-55362493 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 13-342 |
| Cow position: | chr4:61711216-61710890 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 239 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 15-256 |
| Cow position: | chr4:10095085-10095322 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 94, 17 |
| Conread position: | 15-342 |
| Cow position: | chr4:25225003-25224664 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 234 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 33, 14 |
| Conread position: | 16-297 |
| Cow position: | chr4:24022762-24022487 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 90, 13 |
| Conread position: | 17-342 |
| Cow position: | chr4:1936331-1936001 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 33, 12 |
| Conread position: | 19-342 |
| Cow position: | chr4:452977-453297 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 31, 8 |
| Conread position: | 19-342 |
| Cow position: | chr4:5913559-5913875 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 10 |
| Conread position: | 19-342 |
| Cow position: | chr4:60044857-60044530 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 10 |
| Conread position: | 20-295 |
| Cow position: | chr4:3069120-3069389 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-329 |
| Cow position: | chr4:68109374-68109057 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-340 |
| Cow position: | chr4:2350529-2350195 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 38, 9 |
| Conread position: | 20-342 |
| Cow position: | chr4:358071-358407 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr4:3448984-3449319 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 88, 9 |
| Conread position: | 20-342 |
| Cow position: | chr4:4378581-4378915 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 237 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr4:16640799-16641135 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 237 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr4:43317460-43317125 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 239 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr4:43883303-43883637 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr4:60650786-60651114 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 54, 12 |
| Conread position: | 28-189 |
| Cow position: | chr4:42321224-42321071 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 28-295 |
| Cow position: | chr4:28174885-28174623 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 28-342 |
| Cow position: | chr4:3128016-3128338 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 22, 118 |
| Conread position: | 28-342 |
| Cow position: | chr4:21361726-21362046 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 43 |
| Conread position: | 28-342 |
| Cow position: | chr4:48798714-48799041 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 22, 185 |
| Conread position: | 29-295 |
| Cow position: | chr4:34711708-34711980 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 29-319 |
| Cow position: | chr4:44778997-44778702 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 21, 33 |
| Conread position: | 29-342 |
| Cow position: | chr4:12239019-12238704 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 21, 141 |
| Conread position: | 29-342 |
| Cow position: | chr4:13498391-13498718 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 21, 117 |
| Conread position: | 58-295 |
| Cow position: | chr4:17834629-17834387 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 50, 150 |
| Conread position: | 68-296 |
| Cow position: | chr4:16735372-16735142 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 34, 126 |
Show alignments to all cow chromosomes.