Cow genome map
| Conread name: | Emb1-C0005179_B14 |
| Conread position: | 1-287 |
| Cow position: | chr5:58550262-58550539 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 43, 32 |
| Conread position: | 1-289 |
| Cow position: | chr5:31674926-31675218 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 49, 19 |
| Conread position: | 1-296 |
| Cow position: | chr5:58342379-58342675 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 214 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 20, 8 |
| Conread position: | 1-342 |
| Cow position: | chr5:24644588-24644246 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 49, 206 |
| Conread position: | 2-293 |
| Cow position: | chr5:35528165-35528442 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 20, 9 |
| Conread position: | 2-342 |
| Cow position: | chr5:9003842-9003487 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 19, 28 |
| Conread position: | 2-342 |
| Cow position: | chr5:47080548-47080897 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 260 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 19, 6 |
| Conread position: | 2-342 |
| Cow position: | chr5:55833574-55833224 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 4-276 |
| Cow position: | chr5:7810254-7809980 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 46, 5 |
| Conread position: | 7-242 |
| Cow position: | chr5:4879256-4879496 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 43, 176 |
| Conread position: | 7-289 |
| Cow position: | chr5:63389306-63389012 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 7-295 |
| Cow position: | chr5:6586187-6585893 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-295 |
| Cow position: | chr5:28948465-28948175 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 7-295 |
| Cow position: | chr5:30156632-30156926 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 43, 176 |
| Conread position: | 7-295 |
| Cow position: | chr5:34904996-34905284 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-295 |
| Cow position: | chr5:50390846-50390551 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-295 |
| Cow position: | chr5:51167033-51166739 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-295 |
| Cow position: | chr5:71622026-71621732 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 43, 176 |
| Conread position: | 7-297 |
| Cow position: | chr5:22554418-22554703 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 7-302 |
| Cow position: | chr5:12132869-12133177 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 7-334 |
| Cow position: | chr5:54928637-54928304 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-337 |
| Cow position: | chr5:45180819-45180474 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-342 |
| Cow position: | chr5:444798-445143 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-342 |
| Cow position: | chr5:3252866-3252513 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 7-342 |
| Cow position: | chr5:17025943-17026286 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-342 |
| Cow position: | chr5:23667877-23667526 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 250 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-342 |
| Cow position: | chr5:25929413-25929066 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-342 |
| Cow position: | chr5:37423427-37423777 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 252 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 11, 94 |
| Conread position: | 7-342 |
| Cow position: | chr5:40348009-40347657 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 7-342 |
| Cow position: | chr5:46778795-46779140 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-342 |
| Cow position: | chr5:54621903-54622247 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 7-342 |
| Cow position: | chr5:59145647-59145998 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 8-338 |
| Cow position: | chr5:38737079-38737417 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 42, 21 |
| Conread position: | 8-342 |
| Cow position: | chr5:26099994-26100335 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 17, 22 |
| Conread position: | 11-342 |
| Cow position: | chr5:13701383-13701711 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 11-342 |
| Cow position: | chr5:32365047-32365389 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 19 |
| Conread position: | 15-278 |
| Cow position: | chr5:76028434-76028171 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 16-281 |
| Cow position: | chr5:21221486-21221223 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 16-289 |
| Cow position: | chr5:5664943-5664676 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 36, 13 |
| Conread position: | 16-295 |
| Cow position: | chr5:50008665-50008932 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 210 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 34, 18 |
| Conread position: | 16-342 |
| Cow position: | chr5:41955100-41954778 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 93, 13 |
| Conread position: | 16-342 |
| Cow position: | chr5:42043191-42043519 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 16-342 |
| Cow position: | chr5:51860644-51860326 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 34, 18 |
| Conread position: | 20-289 |
| Cow position: | chr5:32141976-32141725 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-290 |
| Cow position: | chr5:4602801-4603076 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-290 |
| Cow position: | chr5:7141813-7141538 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 88, 9 |
| Conread position: | 20-342 |
| Cow position: | chr5:3788515-3788851 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr5:29743265-29742933 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 30, 14 |
| Conread position: | 20-342 |
| Cow position: | chr5:32756152-32755820 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr5:37734661-37734997 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr5:44710092-44709756 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 235 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 30, 14 |
| Conread position: | 20-342 |
| Cow position: | chr5:54786820-54786483 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 30, 14 |
| Conread position: | 20-342 |
| Cow position: | chr5:64779716-64779384 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 20-342 |
| Cow position: | chr5:73486633-73486299 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 21-328 |
| Cow position: | chr5:62376186-62376488 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 8 |
| Conread position: | 23-342 |
| Cow position: | chr5:27172952-27173279 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 27, 6 |
| Conread position: | 28-290 |
| Cow position: | chr5:28015360-28015629 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 49 |
| Conread position: | 28-295 |
| Cow position: | chr5:42507057-42507327 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 22, 152 |
| Conread position: | 28-295 |
| Cow position: | chr5:50688107-50688380 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 22, 155 |
| Conread position: | 28-319 |
| Cow position: | chr5:27196785-27196488 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 22, 118 |
| Conread position: | 28-342 |
| Cow position: | chr5:4349705-4349372 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 22, 185 |
| Conread position: | 28-342 |
| Cow position: | chr5:4435206-4434881 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 22, 118 |
| Conread position: | 28-342 |
| Cow position: | chr5:57337114-57336790 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 22, 42 |
| Conread position: | 29-250 |
| Cow position: | chr5:45840317-45840098 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 21, 134 |
| Conread position: | 29-342 |
| Cow position: | chr5:12920694-12921022 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 29-342 |
| Cow position: | chr5:47342019-47342337 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 21, 77 |
| Conread position: | 29-342 |
| Cow position: | chr5:48806154-48805827 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 30-295 |
| Cow position: | chr5:37379390-37379651 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 20, 116 |
| Conread position: | 34-342 |
| Cow position: | chr5:7583701-7583384 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 230 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 16, 64 |
| Conread position: | 34-342 |
| Cow position: | chr5:70401208-70401529 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 16, 62 |
| Conread position: | 37-347 |
| Cow position: | chr5:8231675-8231360 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 13, 63 |
| Conread position: | 41-342 |
| Cow position: | chr5:8177416-8177732 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 56-342 |
| Cow position: | chr5:58013481-58013183 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 137, 58 |
| Conread position: | 59-342 |
| Cow position: | chr5:34525025-34524732 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 111 |
| Conread position: | 61-342 |
| Cow position: | chr5:2706562-2706267 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 51, 29 |
| Conread position: | 64-295 |
| Cow position: | chr5:41979821-41980043 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 190, 48 |
| Conread position: | 78-295 |
| Cow position: | chr5:52830450-52830228 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 31, 165 |
| Conread position: | 98-343 |
| Cow position: | chr5:54858674-54858424 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 154, 65 |
| Conread position: | 113-342 |
| Cow position: | chr5:57969216-57969446 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 168, 7 |
| Conread position: | 141-342 |
| Cow position: | chr5:70127208-70127414 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 111, 69 |
Show alignments to all cow chromosomes.