Cow genome map

Conread name: Emb1-C0005179_B14

Conread position: 1-289
Cow position: chr6:40159095-40158805 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 208
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 21, 7

Conread position: 1-339
Cow position: chr6:65936235-65935889 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 246
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 19, 29

Conread position: 7-181
Cow position: chr6:662524-662345 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 14, 164

Conread position: 7-202
Cow position: chr6:3685303-3685504 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 143
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 43, 191

Conread position: 7-235
Cow position: chr6:2557063-2557296 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 161
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 14, 23

Conread position: 7-243
Cow position: chr6:14502242-14502483 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 163
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 14, 23

Conread position: 7-295
Cow position: chr6:1508089-1507804 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 202
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 14, 23

Conread position: 7-295
Cow position: chr6:1796251-1795961 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 206
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 14, 23

Conread position: 7-295
Cow position: chr6:14143076-14142781 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 191
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 101, 0

Conread position: 7-295
Cow position: chr6:28186421-28186127 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 205
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 43, 176

Conread position: 7-295
Cow position: chr6:31813585-31813291 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 207
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 18, 23

Conread position: 7-295
Cow position: chr6:39349805-39350099 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 207
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 18, 23

Conread position: 7-295
Cow position: chr6:68029589-68029883 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 209
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 14, 23

Conread position: 7-310
Cow position: chr6:13849490-13849794 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 205
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 43, 22

Conread position: 7-310
Cow position: chr6:28550661-28550356 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 213
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 43, 22

Conread position: 7-335
Cow position: chr6:9264913-9264579 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 225
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 16, 23

Conread position: 7-335
Cow position: chr6:17888516-17888184 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 221
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 14, 23

Conread position: 7-342
Cow position: chr6:49160-48810 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 242
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 14, 23

Conread position: 7-342
Cow position: chr6:2377116-2377466 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 235
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 14, 23

Conread position: 7-342
Cow position: chr6:6720407-6720744 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 238
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 43, 143

Conread position: 7-342
Cow position: chr6:7138919-7138578 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 231
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 14, 23

Conread position: 7-342
Cow position: chr6:8204591-8204942 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 240
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 14, 28

Conread position: 7-342
Cow position: chr6:10043631-10043977 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 231
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 43, 172

Conread position: 7-342
Cow position: chr6:18986432-18986778 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 236
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 43, 138

Conread position: 7-342
Cow position: chr6:19104497-19104147 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 239
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 14, 23

Conread position: 7-342
Cow position: chr6:27341026-27341364 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 236
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 77, 138

Conread position: 7-342
Cow position: chr6:40277487-40277821 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 214
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 13, 23

Conread position: 7-342
Cow position: chr6:45590961-45591310 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 242
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 14, 23

Conread position: 7-342
Cow position: chr6:50636706-50637052 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 242
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 101, 44

Conread position: 7-342
Cow position: chr6:51149353-51149704 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 244
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 15, 23

Conread position: 7-342
Cow position: chr6:62577770-62577420 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 241
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 14, 23

Conread position: 7-342
Cow position: chr6:65820170-65819820 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 243
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 13, 23

Conread position: 7-343
Cow position: chr6:33465378-33465725 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 239
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 43, 138

Conread position: 7-344
Cow position: chr6:26326014-26325662 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 237
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 43, 176

Conread position: 10-330
Cow position: chr6:34237602-34237268 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 236
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 13, 20

Conread position: 12-342
Cow position: chr6:6165091-6165409 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 231
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 19, 31

Conread position: 15-334
Cow position: chr6:31951108-31951427 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 213
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 87, 14

Conread position: 16-289
Cow position: chr6:39956489-39956765 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 204
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 34, 13

Conread position: 16-337
Cow position: chr6:38612116-38611797 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 226
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 40, 13

Conread position: 16-342
Cow position: chr6:16595434-16595765 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 245
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 34, 16

Conread position: 16-342
Cow position: chr6:41676362-41676700 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 12

Conread position: 20-235
Cow position: chr6:51091790-51092016 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 160
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 29, 9

Conread position: 20-283
Cow position: chr6:10646111-10646366 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 185
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 30, 9

Conread position: 20-290
Cow position: chr6:15138740-15138465 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 196
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 30, 9

Conread position: 20-295
Cow position: chr6:25791272-25790990 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 198
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 30, 9

Conread position: 20-295
Cow position: chr6:55901672-55901952 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 195
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 30, 9

Conread position: 20-299
Cow position: chr6:35417490-35417210 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 193
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 92, 9

Conread position: 20-327
Cow position: chr6:20557523-20557209 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 222
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 33, 9

Conread position: 20-330
Cow position: chr6:33950737-33950428 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 216
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 30, 5

Conread position: 20-342
Cow position: chr6:27527560-27527224 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 233
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 30, 9

Conread position: 20-342
Cow position: chr6:35874283-35873950 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 231
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 30, 9

Conread position: 20-342
Cow position: chr6:51716972-51717308 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 234
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 29, 9

Conread position: 20-342
Cow position: chr6:51732508-51732844 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 235
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 30, 9

Conread position: 20-342
Cow position: chr6:55539843-55539507 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 236
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 30, 9

Conread position: 21-298
Cow position: chr6:8636537-8636269 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 183
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 29, 8

Conread position: 28-290
Cow position: chr6:28702276-28702008 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 182
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 22, 118

Conread position: 28-295
Cow position: chr6:3151662-3151925 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 186
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 21, 89

Conread position: 28-295
Cow position: chr6:28001948-28001674 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 190
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 22, 0

Conread position: 28-342
Cow position: chr6:3573218-3573532 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 219
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 32, 24

Conread position: 28-342
Cow position: chr6:11019094-11019419 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 223
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 22, 151

Conread position: 28-342
Cow position: chr6:29479428-29479759 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 224
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 22, 235

Conread position: 28-343
Cow position: chr6:12971484-12971154 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 228
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 22, 155

Conread position: 29-337
Cow position: chr6:29281737-29282042 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 223
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 20, 62

Conread position: 29-342
Cow position: chr6:21975386-21975715 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 228
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 13, 0

Conread position: 29-342
Cow position: chr6:60875732-60876061 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 226
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 21, 0

Conread position: 30-343
Cow position: chr6:62852041-62852356 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 224
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 21, 103

Conread position: 31-227
Cow position: chr6:65844344-65844545 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 139
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 31-295
Cow position: chr6:39435485-39435215 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 192
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 19, 0

Conread position: 34-295
Cow position: chr6:28135374-28135640 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 188
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 19, 104

Conread position: 34-342
Cow position: chr6:11722755-11722433 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 229
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 16, 0

Conread position: 35-296
Cow position: chr6:19329494-19329235 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 196
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 70, 21

Conread position: 36-343
Cow position: chr6:15179654-15179965 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 217
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 24, 16

Conread position: 37-290
Cow position: chr6:51867442-51867696 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 179
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 13, 69

Conread position: 38-342
Cow position: chr6:16592416-16592730 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 219
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 11, 104

Conread position: 40-261
Cow position: chr6:22931408-22931183 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 163
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 62, 0

Conread position: 43-343
Cow position: chr6:58390885-58390575 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 209
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 82, 98

Conread position: 49-295
Cow position: chr6:18496781-18497025 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 165
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 202, 50

Conread position: 50-342
Cow position: chr6:15480058-15480358 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 212
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 150, 119

Conread position: 56-337
Cow position: chr6:47040736-47040452 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 198
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 46, 261

Conread position: 57-283
Cow position: chr6:66838575-66838806 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 58-342
Cow position: chr6:43791108-43790816 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 198
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 126

Conread position: 58-342
Cow position: chr6:48875867-48875569 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 206
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 47, 0

Conread position: 58-342
Cow position: chr6:59618530-59618828 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 215
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 50, 0

Conread position: 58-343
Cow position: chr6:13367547-13367842 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 199
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 110, 120

Conread position: 69-295
Cow position: chr6:8536818-8536587 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 164
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 39, 0

Show alignments to all cow chromosomes.