Cow genome map

Conread name: Emb1-C0005179_B14

Conread position: 1-289
Cow position: chrX:16231593-16231313 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 205
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 20, 7

Conread position: 1-331
Cow position: chrX:20512314-20511983 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 234
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 57, 7

Conread position: 1-341
Cow position: chrX:731310-730963 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 8

Conread position: 1-342
Cow position: chrX:35384578-35384242 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 246
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 49, 7

Conread position: 2-295
Cow position: chrX:34008031-34008329 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 7

Conread position: 2-340
Cow position: chrX:12640021-12639681 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 6

Conread position: 2-342
Cow position: chrX:20133904-20133554 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 6

Conread position: 7-184
Cow position: chrX:35938770-35938588 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 14, 23

Conread position: 7-266
Cow position: chrX:20732498-20732767 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 188
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 16, 23

Conread position: 7-294
Cow position: chrX:41528555-41528270 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 211
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 13, 23

Conread position: 7-295
Cow position: chrX:2560695-2560404 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 196
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 43, 0

Conread position: 7-295
Cow position: chrX:6580194-6580478 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 198
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 14, 26

Conread position: 7-295
Cow position: chrX:7119742-7120038 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 203
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 43, 176

Conread position: 7-295
Cow position: chrX:10529537-10529241 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 206
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 14, 23

Conread position: 7-295
Cow position: chrX:23073397-23073691 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 200
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 13, 23

Conread position: 7-295
Cow position: chrX:29171531-29171237 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 205
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 14, 23

Conread position: 7-295
Cow position: chrX:30164979-30164685 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 206
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 14, 23

Conread position: 7-295
Cow position: chrX:30437157-30437451 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 207
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 18, 23

Conread position: 7-295
Cow position: chrX:31494986-31495283 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 204
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 43, 0

Conread position: 7-295
Cow position: chrX:34093577-34093283 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 206
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 18, 23

Conread position: 7-295
Cow position: chrX:36536480-36536186 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 202
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 14, 23

Conread position: 7-297
Cow position: chrX:12667079-12666783 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 205
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 43, 139

Conread position: 7-302
Cow position: chrX:5392928-5392630 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 210
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 14, 26

Conread position: 7-319
Cow position: chrX:18657551-18657237 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 211
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 14, 23

Conread position: 7-334
Cow position: chrX:37851395-37851729 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 230
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 14, 23

Conread position: 7-342
Cow position: chrX:2578676-2579020 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 232
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 43, 134

Conread position: 7-342
Cow position: chrX:3418968-3418617 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 240
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 14, 23

Conread position: 7-342
Cow position: chrX:3466108-3465762 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 235
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 14, 23

Conread position: 7-342
Cow position: chrX:5281529-5281183 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 227
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 14, 23

Conread position: 7-342
Cow position: chrX:5865391-5865744 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 237
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 14, 23

Conread position: 7-342
Cow position: chrX:16045221-16045571 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 242
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 14, 26

Conread position: 7-342
Cow position: chrX:22565435-22565085 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 238
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 14, 23

Conread position: 8-283
Cow position: chrX:15569660-15569379 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 202
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 15, 22

Conread position: 8-290
Cow position: chrX:16736819-16736536 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 204
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 12, 26

Conread position: 8-302
Cow position: chrX:29765269-29765564 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 22

Conread position: 8-343
Cow position: chrX:22331522-22331170 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 22

Conread position: 9-340
Cow position: chrX:42008884-42009228 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 21

Conread position: 9-342
Cow position: chrX:15992567-15992910 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 247
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 12, 28

Conread position: 10-337
Cow position: chrX:37820411-37820734 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 236
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 40, 19

Conread position: 13-342
Cow position: chrX:30137598-30137256 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 237
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 37, 16

Conread position: 15-283
Cow position: chrX:19877078-19877343 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 197
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 101, 14

Conread position: 15-295
Cow position: chrX:40642476-40642760 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 10

Conread position: 16-288
Cow position: chrX:27497137-27497407 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 190
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 34, 13

Conread position: 16-340
Cow position: chrX:27000260-27000563 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 235
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 34, 13

Conread position: 16-341
Cow position: chrX:25406483-25406152 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 13

Conread position: 17-296
Cow position: chrX:13416164-13415882 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 201
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 33, 126

Conread position: 20-295
Cow position: chrX:16710230-16710512 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 195
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 30, 9

Conread position: 20-295
Cow position: chrX:21591553-21591837 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 203
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 29, 9

Conread position: 20-334
Cow position: chrX:24463161-24462845 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 221
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 29, 16

Conread position: 20-342
Cow position: chrX:7552542-7552202 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 233
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 30, 9

Conread position: 20-342
Cow position: chrX:9094910-9095242 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 234
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 30, 9

Conread position: 20-342
Cow position: chrX:12464272-12464606 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 233
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 30, 9

Conread position: 20-342
Cow position: chrX:16701948-16702283 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 231
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 30, 9

Conread position: 20-342
Cow position: chrX:18192681-18192998 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 225
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 85, 9

Conread position: 20-342
Cow position: chrX:20725237-20725570 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 229
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 30, 9

Conread position: 20-342
Cow position: chrX:21581706-21582041 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 235
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 30, 9

Conread position: 20-342
Cow position: chrX:23453788-23453453 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 233
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 30, 9

Conread position: 20-342
Cow position: chrX:24444804-24444470 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 232
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 30, 9

Conread position: 23-342
Cow position: chrX:30090750-30090434 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 233
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 26, 6

Conread position: 27-342
Cow position: chrX:14783075-14782746 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 218
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 17, 28

Conread position: 28-205
Cow position: chrX:31051942-31051766 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 148
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 22, 131

Conread position: 28-290
Cow position: chrX:7754177-7754445 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 182
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 22, 0

Conread position: 28-290
Cow position: chrX:16085900-16086164 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 188
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 22, 114

Conread position: 28-290
Cow position: chrX:28587252-28587520 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 187
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 22, 155

Conread position: 28-295
Cow position: chrX:672717-672448 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 188
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 22, 113

Conread position: 28-295
Cow position: chrX:13929459-13929190 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 182
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 22, 0

Conread position: 28-295
Cow position: chrX:14597127-14597400 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 193
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 22, 230

Conread position: 28-295
Cow position: chrX:45417328-45417064 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 180
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 22, 179

Conread position: 28-327
Cow position: chrX:31340393-31340080 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 227
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 22, 168

Conread position: 28-334
Cow position: chrX:29909154-29908825 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 224
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 22, 0

Conread position: 28-342
Cow position: chrX:20741356-20741029 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 117

Conread position: 28-342
Cow position: chrX:22126502-22126182 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 227
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 22, 6

Conread position: 28-342
Cow position: chrX:27984081-27983754 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 226
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 22, 117

Conread position: 28-342
Cow position: chrX:28754066-28753737 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 226
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 22, 0

Conread position: 28-342
Cow position: chrX:30054197-30053869 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 226
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 22, 156

Conread position: 28-342
Cow position: chrX:31727747-31728076 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 234
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 22, 0

Conread position: 28-342
Cow position: chrX:34835720-34835418 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 221
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 97, 40

Conread position: 29-289
Cow position: chrX:41686886-41687151 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 176
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 116

Conread position: 29-342
Cow position: chrX:5321440-5321112 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 225
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 21, 117

Conread position: 30-341
Cow position: chrX:36838993-36839314 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 221
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 20, 202

Conread position: 34-342
Cow position: chrX:41595510-41595220 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 218
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 26, 187

Conread position: 35-342
Cow position: chrX:27591742-27591421 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 227
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 23, 17

Conread position: 36-342
Cow position: chrX:17611164-17610849 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 216
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 14, 99

Conread position: 36-342
Cow position: chrX:23573523-23573208 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 222
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 14, 173

Conread position: 48-295
Cow position: chrX:15622249-15621988 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 176
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 77, 0

Conread position: 49-342
Cow position: chrX:31979540-31979240 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 212
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 57, 95

Conread position: 57-342
Cow position: chrX:20363841-20363537 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 214
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 44, 0

Conread position: 64-295
Cow position: chrX:21661753-21661517 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 171
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 44, 0

Conread position: 69-255
Cow position: chrX:16464491-16464678 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 182, 0

Conread position: 69-294
Cow position: chrX:35285960-35286194 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 59, 0

Conread position: 69-296
Cow position: chrX:26530269-26530502 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 163
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 42, 0

Conread position: 77-342
Cow position: chrX:19212976-19212694 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 190
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 32, 0

Conread position: 97-342
Cow position: chrX:12178651-12178396 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 168
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 157, 0

Conread position: 98-289
Cow position: chrX:4413235-4413426 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 18, 43

Conread position: 177-342
Cow position: chrX:15341476-15341645 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 76, 0

Show alignments to all cow chromosomes.